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  • 1
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    In:  Physics Chem. Earth, Reykjavík, Icelandic Meteorological Office, Ministry for the Environment, University of Iceland, vol. 25, no. 2, pp. 141-147, pp. L05306, (ISSN: 1340-4202)
    Publication Date: 2000
    Keywords: Fluids ; Physical properties of rocks ; cracks and fractures (.NE. fracturing)
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  • 2
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    In:  Surveys in Geophysics, Reykjavík, Icelandic Meteorological Office, Ministry for the Environment, University of Iceland, vol. 17, no. 4, pp. 347-360, pp. L05306, (ISSN: 1340-4202)
    Publication Date: 1996
    Keywords: Applied geophysics ; Physical properties of rocks ; Attenuation ; Geothermics ; Fluids ; cracks and fractures (.NE. fracturing)
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  • 3
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    In:  Geophysics, Reykjavík, Icelandic Meteorological Office, Ministry for the Environment, University of Iceland, vol. 67, no. 1, pp. 221-229, pp. L05306, (ISSN: 1340-4202)
    Publication Date: 2002
    Keywords: cracks and fractures (.NE. fracturing) ; Fluids ; Seismology ; Location ; pressure ; changes
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  • 4
    Publication Date: 1998-04-16
    Description: Photoactive yellow protein (PYP) is a member of the xanthopsin family of eubacterial blue-light photoreceptors. On absorption of light, PYP enters a photocycle that ultimately transduces the energy contained in a light signal into an altered biological response. Nanosecond time-resolved x-ray crystallography was used to determine the structure of the short-lived, red-shifted, intermediate state denoted [pR], which develops within 1 nanosecond after photoelectronic excitation of the chromophore of PYP by absorption of light. The resulting structural model demonstrates that the [pR] state possesses the cis conformation of the 4-hydroxyl cinnamic thioester chromophore, and that the process of trans to cis isomerization is accompanied by the specific formation of new hydrogen bonds that replace those broken upon excitation of the chromophore. Regions of flexibility that compose the chromophore-binding pocket serve to lower the activation energy barrier between the dark state, denoted pG, and [pR], and help initiate entrance into the photocycle. Direct structural evidence is provided for the initial processes of transduction of light energy, which ultimately translate into a physiological signal.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Perman, B -- Srajer, V -- Ren, Z -- Teng, T -- Pradervand, C -- Ursby, T -- Bourgeois, D -- Schotte, F -- Wulff, M -- Kort, R -- Hellingwerf, K -- Moffat, K -- New York, N.Y. -- Science. 1998 Mar 20;279(5358):1946-50.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Biochemistry and Molecular Biology, University of Chicago, Chicago, IL 60637, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/9506946" target="_blank"〉PubMed〈/a〉
    Keywords: Bacterial Proteins/*chemistry/metabolism ; Chromatiaceae/chemistry ; Crystallography, X-Ray ; Energy Metabolism ; Fourier Analysis ; Hydrogen Bonding ; Isomerism ; Kinetics ; *Light ; Models, Molecular ; *Photoreceptors, Microbial ; *Protein Conformation ; Signal Transduction
    Print ISSN: 0036-8075
    Electronic ISSN: 1095-9203
    Topics: Biology , Chemistry and Pharmacology , Computer Science , Medicine , Natural Sciences in General , Physics
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  • 5
    Publication Date: 2003-06-21
    Description: We report picosecond time-resolved x-ray diffraction from the myoglobin (Mb) mutant in which Leu29 is replaced by Phe (L29Fmutant). The frame-by-frame structural evolution, resolved to 1.8 angstroms, allows one to literally "watch" the protein as it executes its function. Time-resolved mid-infrared spectroscopy of flash-photolyzed L29F MbCO revealed a short-lived CO intermediate whose 140-ps lifetime is shorter than that found in wild-type protein by a factor of 1000. The electron density maps of the protein unveil transient conformational changes far more dramatic than the structural differences between the carboxy and deoxy states and depict the correlated side-chain motion responsible for rapidly sweeping CO away from its primary docking site.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Schotte, Friedrich -- Lim, Manho -- Jackson, Timothy A -- Smirnov, Aleksandr V -- Soman, Jayashree -- Olson, John S -- Phillips, George N Jr -- Wulff, Michael -- Anfinrud, Philip A -- AR40252/AR/NIAMS NIH HHS/ -- GM35649/GM/NIGMS NIH HHS/ -- HL47020/HL/NHLBI NIH HHS/ -- New York, N.Y. -- Science. 2003 Jun 20;300(5627):1944-7.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Laboratory of Chemical Physics, National Institute of Diabetes and Digestive and Kidney Diseases, National Institutes of Health, Bethesda, MD 20892, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/12817148" target="_blank"〉PubMed〈/a〉
    Keywords: Amino Acid Substitution ; Animals ; Binding Sites ; Carbon Monoxide/chemistry/metabolism ; Crystallography, X-Ray/*methods ; Fourier Analysis ; Heme/chemistry ; Ligands ; Models, Molecular ; Mutagenesis, Site-Directed ; Myoglobin/*chemistry/genetics/*metabolism ; Photolysis ; Protein Conformation ; Spectrophotometry, Infrared ; Time Factors ; Whales
    Print ISSN: 0036-8075
    Electronic ISSN: 1095-9203
    Topics: Biology , Chemistry and Pharmacology , Computer Science , Medicine , Natural Sciences in General , Physics
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  • 6
    Publication Date: 2003-04-26
    Description: We report the direct observation by x-ray diffraction of a photoinduced paraelectric-to-ferroelectric structural phase transition using monochromatic 100-picosecond synchrotron pulses. It occurs in tetrathiafulvalene-p-chloranil, a charge-transfer molecular material in which electronic and structural changes are strongly coupled. An optical 300-femtosecond laser pulse switches the material from a neutral to an ionic state on a 500-picosecond time scale and, by virtue of intrinsic cooperativity, generates self-organized long-range structural order. The x-ray data indicate a macroscopic ferroelectric reorganization after the laser irradiation. Refinement of the structures before and after laser irradiation indicates structural changes at the molecular level.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Collet, Eric -- Lemee-Cailleau, Marie-Helene -- Buron-Le Cointe, Marylise -- Cailleau, Herve -- Wulff, Michael -- Luty, Tadeusz -- Koshihara, Shin-Ya -- Meyer, Mathias -- Toupet, Loic -- Rabiller, Philippe -- Techert, Simone -- New York, N.Y. -- Science. 2003 Apr 25;300(5619):612-5.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Groupe Matiere Condensee et Materiaux, UMR CNRS 6626, Universite Rennes 1, 35042 Rennes Cedex, France.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/12714737" target="_blank"〉PubMed〈/a〉
    Print ISSN: 0036-8075
    Electronic ISSN: 1095-9203
    Topics: Biology , Chemistry and Pharmacology , Computer Science , Medicine , Natural Sciences in General , Physics
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  • 7
    Publication Date: 2005-07-16
    Description: We report direct structural evidence of the bridged radical (CH2ICH2.) in a polar solution, obtained using time-resolved liquid-phase x-ray diffraction. This transient intermediate has long been hypothesized to explain stereo-chemical control in many association and/or dissociation reactions involving haloalkanes. Ultrashort optical pulses were used to dissociate an iodine atom from the haloethane molecule (C2H4I2) dissolved in methanol, and the diffraction of picosecond x-ray pulses from a synchrotron supports the following structural dynamics, with approximately 0.01 angstrom spatial resolution and approximately 100 picosecond time resolution: The loss of one iodine atom from C2H4I2 leads to the C-I-C triangular geometry of CH2ICH2.. This transient C2H4I then binds to an iodine atom to form a new species, the C2H4I-I isomer, which eventually decays into C2H4 + I2. Solvent dynamics were also extracted from the data, revealing a change in the solvent cage geometry, heating, and thermal expansion.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Ihee, H -- Lorenc, M -- Kim, T K -- Kong, Q Y -- Cammarata, M -- Lee, J H -- Bratos, S -- Wulff, M -- New York, N.Y. -- Science. 2005 Aug 19;309(5738):1223-7. Epub 2005 Jul 14.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Chemistry and School of Molecular Science (BK21), Korea Advanced Institute of Science and Technology (KAIST), Daejeon, 305-701, Republic of Korea. hyotcherl.ihee@kaist.ac.kr〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/16020695" target="_blank"〉PubMed〈/a〉
    Keywords: Computer Simulation ; Free Radicals ; Hydrocarbons, Iodinated/*chemistry ; Isomerism ; Methanol/chemistry ; Molecular Structure ; Scattering, Radiation ; Solutions ; Solvents/chemistry ; Synchrotrons ; Temperature ; Thermodynamics ; Time Factors ; X-Ray Diffraction/*methods ; X-Rays
    Print ISSN: 0036-8075
    Electronic ISSN: 1095-9203
    Topics: Biology , Chemistry and Pharmacology , Computer Science , Medicine , Natural Sciences in General , Physics
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  • 8
    Publication Date: 1996-12-06
    Description: The biological activity of macromolecules is accompanied by rapid structural changes. The photosensitivity of the carbon monoxide complex of myoglobin was used at the European Synchrotron Radiation Facility to obtain pulsed, Laue x-ray diffraction data with nanosecond time resolution during the process of heme and protein relaxation after carbon monoxide photodissociation and during rebinding. These time-resolved experiments reveal the structures of myoglobin photoproducts, provide a structural foundation to spectroscopic results and molecular dynamics calculations, and demonstrate that time-resolved macromolecular crystallography can elucidate the structural bases of biochemical mechanisms on the nanosecond time scale.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Srajer, V -- Teng, T -- Ursby, T -- Pradervand, C -- Ren, Z -- Adachi, S -- Schildkamp, W -- Bourgeois, D -- Wulff, M -- Moffat, K -- GM 36452/GM/NIGMS NIH HHS/ -- RR 07707/RR/NCRR NIH HHS/ -- New York, N.Y. -- Science. 1996 Dec 6;274(5293):1726-9.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Biochemistry and Molecular Biology and the Consortium for Advanced Radiation Sources, University of Chicago, Chicago, IL 60637, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/8939867" target="_blank"〉PubMed〈/a〉
    Keywords: Carbon Monoxide/chemistry/metabolism ; Computer Simulation ; Crystallography, X-Ray/*methods ; Fourier Analysis ; Globins/chemistry ; Heme/chemistry ; Histidine/chemistry ; Iron/chemistry ; Ligands ; Myoglobin/*chemistry/metabolism ; Photolysis ; Temperature ; Time Factors
    Print ISSN: 0036-8075
    Electronic ISSN: 1095-9203
    Topics: Biology , Chemistry and Pharmacology , Computer Science , Medicine , Natural Sciences in General , Physics
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  • 9
    Publication Date: 2010-05-01
    Description: Photosynthetic reaction centers convert the energy content of light into a transmembrane potential difference and so provide the major pathway for energy input into the biosphere. We applied time-resolved Laue diffraction to study light-induced conformational changes in the photosynthetic reaction center complex of Blastochloris viridis. The side chain of TyrL162, which lies adjacent to the special pair of bacteriochlorophyll molecules that are photooxidized in the primary light conversion event of photosynthesis, was observed to move 1.3 angstroms closer to the special pair after photoactivation. Free energy calculations suggest that this movement results from the deprotonation of this conserved tyrosine residue and provides a mechanism for stabilizing the primary charge separation reactions of photosynthesis.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Wohri, Annemarie B -- Katona, Gergely -- Johansson, Linda C -- Fritz, Emelie -- Malmerberg, Erik -- Andersson, Magnus -- Vincent, Jonathan -- Eklund, Mattias -- Cammarata, Marco -- Wulff, Michael -- Davidsson, Jan -- Groenhof, Gerrit -- Neutze, Richard -- New York, N.Y. -- Science. 2010 Apr 30;328(5978):630-3. doi: 10.1126/science.1186159.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Chemical and Biological Engineering, Chalmers University of Technology, Box 462, SE-40530 Goteborg, Sweden.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/20431017" target="_blank"〉PubMed〈/a〉
    Keywords: Bacterial Proteins/*chemistry/metabolism ; Bacteriochlorophylls/chemistry/metabolism ; Crystallography, X-Ray ; Cytochromes c/chemistry/metabolism ; Electron Transport ; Hydrogen Bonding ; Hydrogen-Ion Concentration ; Hyphomicrobiaceae/*chemistry/metabolism ; *Light ; Models, Molecular ; Molecular Dynamics Simulation ; Oxidation-Reduction ; Photosynthetic Reaction Center Complex Proteins/*chemistry/metabolism ; Protein Conformation ; Protons ; Quinones/chemistry/metabolism ; Thermodynamics
    Print ISSN: 0036-8075
    Electronic ISSN: 1095-9203
    Topics: Biology , Chemistry and Pharmacology , Computer Science , Medicine , Natural Sciences in General , Physics
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  • 10
    Publication Date: 2013-12-27
    Description: Author(s): T. Reusch, D. D. Mai, M. Osterhoff, D. Khakhulin, M. Wulff, and T. Salditt We study the nonequilibrium shape fluctuations in fluorescence labeled phospholipid multibilayers composed of the model lipid DOPC and the well-known lipid dye Texas red, driven out of equilibrium by short laser pulses. The temporal evolution of the lipid bilayer undulations after excitation was rec... [Phys. Rev. Lett. 111, 268101] Published Thu Dec 26, 2013
    Keywords: Soft Matter, Biological, and Interdisciplinary Physics
    Print ISSN: 0031-9007
    Electronic ISSN: 1079-7114
    Topics: Physics
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