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  • 1
    Publication Date: 2023-09-29
    Description: This dataset comprises environmental parameters for biological soil crusts in coastal sand dunes in northern Germany. Biological soil crusts (biocrusts) are autonomous ecosystems consisting of prokaryotic and eukaryotic microorganisms growing on the topsoil. They colonize global climatic zones, including temperate dunes. This study examined changes in the community structure of biocrust phototrophic organisms along a dune chronosequence at the Baltic Sea compared to an inland dune in Northern Germany. The community composition and their shift between different successional stages of dune development were related to physico-chemical sediment properties. A vegetation survey followed by species determination and sediment analyses were conducted. The sampling took place on the 25th of April and on the 5th of May 2020. The samples were collected at a costal dune area, namely the Schaabe spit on the island Rügen, Mecklenburg Wester-Pomerania, Germany, and in an inland dune area at Verden (Aller), Lower Saxony, Germany. Biocrust samples were taken along one transect per study site. Each transect followed a natural succession gradient in the dune area. Along each transect, the different successional dune stages were visually identified and further named as dune subsites. At each subsite, a sampling plot of 1 m2 was established and used for further vegetation analyses, biocrust and sediment sampling. Along the Schaabe spit transect four subsites with one sampling plot each were established and three subsites were established in the inland dune in Verden. For the vegetation survey seven different functional groups were defined describing the overall surface coverage: Thin (1-3 mm) green algae-dominated biocrusts were defined as early successional stages. Later successional stages, in which the green algae biocrusts became slightly thicker (3-8 mm) and moss-covered, were defined as the intermediate successional biocrust stage. Moss-dominated biocrusts and those who additionally lichenized characterized the mature successional stages of biocrusts. Vascular plants, and litter (dead material, i.e., pine needles, leaves, and branches) were two of the non-cryptogamic but still biotic functional groups. Bare sediment was the only abiotic functional group. The predefined functional groups were recorded within each plot according to the point intercept method by Levy and Madden (1933). Each of the seven sampling plots was divided into 16 equal subplots (0.0625 m2). A 25 cm x 25 cm (0.0625 m2) grid of 25 intersections was placed randomly into 4 of these subplots. Within each sub-plot, the functional groups were recorded by 25 point measurements according to the approach of Williams et al. (2017). That allowed 100 point measurements per sampling plot (1 m2).
    Keywords: 16S rRNA; algae; Calculated; Carbon, per dry mass; Carbon/Nitrogen ratio; Chlorophyll total, areal concentration; Crusts; Darßer Ort, Mecklenburg Western Pomerania, Germany; DOBD; DOeGD; DOlGD; DOWD; dune; Event label; Field experiment; Green algae-dominated biocrust, cover; ICP-OES, Perkin-Elmer, Optima 8300; LATITUDE; lichens; Litter, cover; Location; LONGITUDE; Moss-dominated biocrust, cover; Nitrogen, per dry mass; Nutrient analyzer, Elementar Analysensysteme GmbH, vario EL cube; Organic matter; pH; pH meter, Mettler Toledo, S47-SevenMulti; Phosphorus, total; POBD; POGD; Point Intercept Method (Levy and Madden, 1933); POWD; POWW; Pramort, Mecklenburg Western Pomerania, Germany; PreDCI; PreIS; Prerow, Mecklenburg Western Pomerania, Germany; ProGD; ProH; Replicate; Rügen, Mecklenburg Western Pomerania, Germany; Sampling date; SchBD; SchGD; SchPD; SchWD; sediment analysis; Sediment cover; Site; soil ecology; Spectrophotometer, Shimadzu Corporation, UV 2401PC; Vegetation cover, vascular plants; VerctF; Verden (Aller), Lower Saxony, Germany; VerTsZ; Water content, sediment
    Type: Dataset
    Format: text/tab-separated-values, 865 data points
    Location Call Number Expected Availability
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  • 2
    Publication Date: 2023-09-28
    Description: This data collection comprises environmental data and taxonomic parameters of the investigated biocrusts of sampling sites in coastal and inland sand dunes in northern Germany. Sampling took place in spring 2020 and winter 2021. Biocrusts and uppermost sediment samples were collected along dune successional gradients and sequenced by LGC Genomics Ltd. Corresponding sequence data of biocrust organisms are archived at the European Nucleotide Archive.
    Keywords: 16S rRNA; algae; Crusts; dune; Leibniz Science Campus Phosphorus Research Rostock; Phosphorus_Research; sediment analysis; soil ecology
    Type: Dataset
    Format: application/zip, 2 datasets
    Location Call Number Expected Availability
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  • 3
    Publication Date: 2024-01-24
    Description: This dataset comprises the microbial community composition of biological soil crusts in north-German sand dunes. For this we obtained enrichment cultures of phototrophic microorganisms, by placing fragments of biocrusts of the same Petri dishes as used for sequencing, in Petri dishes with Bold Basal (1N BBM) agarized medium (Bischoff and Bold 1963). Cultures were grown under standard laboratory conditions: with a 12-hour alteration of light and dark phases and irradiation of 25 μmol photons m-2 s-1 at a temperature 20 ± 5 ºС. Microscopic study of these raw cultures began in the third week of cultivation. Morphological examinations were performed using Olympus BX53 light microscope with Nomarski DIC optics (Olympus Ltd, Hamburg, Germany). Micrographs were taken with a digital camera (Olympus LC30) attached to the microscope, and processed by the Olympus software cellSens Entry. Direct microscopy of rewetted samples was performed in parallel with cultivation for evaluation of dominating species of algae and cyanobacteria in the original samples. Morphological identification of the biocrust organisms was based mainly on Ettl and Gärtner (2014) for green microalgae, and on Komárek (2013) for cyanobacteria, as well as on some monographs and papers devoted to taxonomic revisions of the taxa of interest (Darienko and Pröschold 2019). Moss and lichens samples were air-dried after collection. For determination, a microscope with a maximum magnification of 400x was used. Morphological identification of mosses followed Frahm and Frey (2004) with taxonomical reference to (Hodgetts et al. 2020). Lichens were determined according to Wirth et al. (2013). Morphologically critical species of the genus Cladonia where additionally analyzed by thin-layer chromatography according to (Culberson and Ammann 1979) in solvent system A.
    Keywords: 16S rRNA; Actinochloris terrestris; algae; Amandinea punctata; Asterococcus sp.; Bacidina etayana; Brachythecium albicans; Bracteacoccus sp.; Bryum capillare; Caloplaca cerinella; Campylopus introflexus; Cephaloziella divaricata; Ceratodon purpureus; Chlorella vulgaris; Chlorococcum sp.; Chloroidium cf. ellipsoideum; Chlorokybus atmophyticus; Chlorolobion sp.; Cladonia arbuscula; Cladonia chlorophaea; Cladonia ciliata; Cladonia coccifera; Cladonia conista; Cladonia fimbriata; Cladonia floerkeana; Cladonia foliacea; Cladonia furcata; Cladonia glauca; Cladonia gracilis; Cladonia humilis; Cladonia macilenta; Cladonia novochlorophaea; Cladonia phyllophora; Cladonia portentosa; Cladonia ramulosa; Cladonia rangiformis; Cladonia rei; Cladonia scabriuscula; Cladonia subulata; Cladonia uncialis ssp. biuncialis; Coccomyxa sp.; Coelastrella sp.; Crusts; Cylindrocystis cf. crassa; Cylindrocystis sp.; Darßer Ort, Mecklenburg Western Pomerania, Germany; DATE/TIME; Dicranum scoparium; Diplosphaera chodatii; DOBD; DOeGD; DOlGD; DOWD; dune; Elevation of event; Elliptochloris subsphaerica; Eremochloris sp.; Event label; Evernia prunastri; Field experiment; Hennediella heimii; Hypnum cupressiforme; Hypnum cupressiforme var. lacunosum; Hypnum jutlandicum; Hypogymnia physodes; Interfilum cf. massjukiae; Interfilum terricola; Klebsormidium cf. flaccidum; Klebsormidium cf. subtile; Klebsormidium crenulatum; Latitude of event; Lecania cyrtella; Lecanora hagenii; Lecanora persimilis; Leptolyngbya sp.; Light microscope; Light microscope, Olympus Ltd, BX53, with Nomarski DIC optics; Lobochlamys sp.; Location; Longitude of event; Lophozia bicuspidata; Macrochloris sp.; Micarea misella; Microcoleus vaginatus; Myrmecia cf. irregularis; Nannochloris sp.; Nodosilinea cf. epilithica; Nostoc cf. commune; Nostoc cf. edaphicum; Nostoc cf. linckia; Nostoc sp.; Oxyrrhynchium praelongum; Parietochloris cf. alveolaris; Parmelia sulcata; Peltigera extenuata; Peltigera hymenia; Physcia tenella; Placynthiella uliginosa; Planophila sp.; Pleurozium schreberi; POBD; POGD; Pohlia nutans; Polytrichum juniperinum; Polytrichum piliferum; POWD; POWW; Pramort, Mecklenburg Western Pomerania, Germany; PreDCI; PreIS; Prerow, Mecklenburg Western Pomerania, Germany; ProGD; ProH; Pseudochlorella sp.; Pseudomuriella cf. aurantiaca; Pseudoscleropodium purum; Ptilidium ciliatum; Ptychostomum capillare; Ptychostomum compactum; Ptychostomum imbricatulum; Ptychostomum moravicum; Racomitrium canescens; Racomitrium elongatum; Rügen, Mecklenburg Western Pomerania, Germany; SchBD; SchGD; SchPD; SchWD; Scoliciosporum gallurae; sediment analysis; Site; soil ecology; Spongiochloris sp.; Stenomitos sp.; Stichococcus allas; Stichococcus cf. bacillaris; Syntrichia ruraliformis; Tetracystis cf. sarcinalis; Tetradesmus arenicola; Thin layer chromatography; Timaviella sp.; Tolypothrix cf. byssoidea; VerctF; Verden (Aller), Lower Saxony, Germany; VerTsZ; Watanabea cf. acidophila; Xanthoria parietina
    Type: Dataset
    Format: text/tab-separated-values, 1962 data points
    Location Call Number Expected Availability
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