Publication Date:
2015-12-03
Description:
Introduction Gene expression profiling studies in the Philadelphia-negative chronic myeloproliferative neoplasms (MPNs) have unraveled significant deregulation of several immune and inflammation genes of potential importance for clonal evolution (Skov V et al., Eur J Haematol 2011; Leuk Res 2012; Exp Hematol 2012). Other mechanisms might be downregulation of major histocompatibility (MHC) class I and II genes, which are used by tumor cells to escape antitumor T-cell-mediated immune responses. In a previous study, several genes encoding human leukocyte antigen (HLA) class I and II molecules, beta2microglobulin and members of the antigen processing machinery of HLA class I molecules (LMP2, LMP7, TAP1, TAP2 and tapasin) have been shown to be significantly downregulated (Skov V, Leuk Lymphoma 2012). Upregulation of HLA-genes is considered one of the mechanisms of action of interferon-alpha2 (IFN-alpha2) but regulation of these genes during IFN-alpha2 treatment of patients with MPNs has never been studied. The purpose of this study was to assess the regulation of several HLA genes before and during treatment with IFN-alpha2, the hypothesis being that IFN-alpha2 - as in other cancers - may restore downregulation of HLA genes in MPNs as well. Patients and Methods Using Affymetrix HG-U133 2.0 Plus microarrays, gene expression profiling have been performed on whole blood from patients with ET (n =8), PV (n = 21), and PMF (n = 4) before and after 3 months of treatment with IFN-alpha2. Background correction, normalization, and gene expression index calculation were performed with the robust multi-array (rma) method. The regularized t-test limma for pairwise data was used to calculate differences in gene expression between patients before and after treatment with IFN-alpha2. A p-value 〈 0.05 was considered significant. Results Statistical analysis of all 54,675 probe sets on the microarray revealed 6261, 10,008, 2828, and 12,390 probe sets to be significantly differentially expressed in ET, PV, PMF, and MPNs as a whole, respectively, in response to treatment with IFN-alpha2 (P-value
Print ISSN:
0006-4971
Electronic ISSN:
1528-0020
Topics:
Biology
,
Medicine
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