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  • 1
    Electronic Resource
    Electronic Resource
    s.l. : American Chemical Society
    Inorganic chemistry 4 (1965), S. 563-566 
    ISSN: 1520-510X
    Source: ACS Legacy Archives
    Topics: Chemistry and Pharmacology
    Type of Medium: Electronic Resource
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  • 2
    ISSN: 1520-4995
    Source: ACS Legacy Archives
    Topics: Biology , Chemistry and Pharmacology
    Type of Medium: Electronic Resource
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  • 3
    Electronic Resource
    Electronic Resource
    s.l. : American Chemical Society
    Biochemistry 10 (1971), S. 2227-2230 
    ISSN: 1520-4995
    Source: ACS Legacy Archives
    Topics: Biology , Chemistry and Pharmacology
    Type of Medium: Electronic Resource
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  • 4
    Electronic Resource
    Electronic Resource
    Copenhagen : International Union of Crystallography (IUCr)
    Applied crystallography online 11 (1978), S. 487-487 
    ISSN: 1600-5767
    Source: Crystallography Journals Online : IUCR Backfile Archive 1948-2001
    Topics: Geosciences , Physics
    Notes: As part of a general X-ray scattering study on individual ribosomal components and their specific complexes, this study deals with the proteins S1, S8, S15, S16 and S20, the S4-binding region of 16-S RNA, S4-RNA, as well as the specific complexes 5-S RNA–L18, 5-S RNA–L18–L25 and S4–RNA–S4; the proteins were prepared under non-denaturing conditions. In agreement with the previous X-ray scattering studies (Österberg, Sjöberg, Liljas & Pettersson, 1976; Österberg, Sjöberg & Garrett, 1976a; Österberg, Sjöberg, Garrett & Littlechild 1977), involving the proteins L7/L12, L18, L25 and S4, the present data indicate that the proteins are elongated.
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  • 5
    ISSN: 1433-4909
    Keywords: Key wordsSulfolobus solfataricus ; Translation initiation ; Shine ; Dalgarno ; Transcription ; Crenarchaeota
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract The translational starts of 144 Sulfolobus solfataricus genes have been determined by database comparison. Half the genes lie inside operons and the other half are at the start of an operon or single genes. A Shine–Dalgarno sequence is found upstream of the genes inside operons, but not for the first gene in an operon or isolated genes; this indicates that two different mechanisms are used for translation initiation in S. solfataricus. A box A transcriptional signal is found for the genes starting an operon or isolated genes, but not for the genes inside an operon. The box A signal is located about 27 nt upstream of the start codon, which implies that little or no upstream sequence is available for translation initiation for this group of genes. This finding is discussed.
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  • 6
    ISSN: 1433-4909
    Keywords: Key wordsSulfolobus ; Thermophile ; pNOB8 ; Conjugation ; Archaeon
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract The complete nucleotide sequence of the archaeal conjugative plasmid, pNOB8, from the Sulfolobus isolate NOB8-H2, was determined. The plasmid is 41 229 bp in size and contains about 50 ORFs. Several direct sequence repeats are present, the largest of which is a perfect 85-bp repeat and a site of intraplasmid recombination in foreign Sulfolobus hosts. This recombination event produces a major deletion variant, pNOB8-33, which is not stably maintained. Less than 20% of the ORFs could be assigned putative functions after extensive database searches. Tandem ORFs 315 and 470, within the deleted 8-kb region, show significant sequence similarity to the protein superfamilies of ParA (whole protein) and ParB (N-terminal half), respectively, that are important for plasmid and chromosome partitioning in bacteria. A putative cis-acting element is also present that exhibits six 24-mer repeats containing palindromic sequences which are separated by 39 or 42 bp. By analogy with bacterial systems, this element may confer plasmid incompatibility and define a group of incompatible plasmids in Archaea. Although several ORFs can form putative trans-membrane or membrane-binding segments, only two ORFs show significant sequence similarity to bacterial conjugative proteins. ORF630b aligns with the TrbE protein superfamily, which contributes to mating pair formation in Bacteria, while ORF1025 aligns with the TraG protein superfamily. We infer that the conjugative mechanism for Sulfolobus differs considerably from known bacterial mechanisms. Finally, two transposases were detected; ORF413 is flanked by an imperfect 32-bp inverted repeat with a 5-bp direct repeat at the ends, and ORF406 is very similar in sequence to an insertion element identified in the Sulfolobus solfataricus P2 genome.
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  • 7
    Electronic Resource
    Electronic Resource
    Springer
    Extremophiles 1 (1997), S. 183-192 
    ISSN: 1433-4909
    Keywords: Key words Archaea ; Hyperthermophile ; Pyrococcus Sulfolobus ; Shuttle vector ; Alcohol dehydrogenase
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Progress in understanding the basic molecular, biochemical, and physiological characteristics of archaeal hyperthermophiles has been limited by the lack of suitable expression vectors. Here, we report the construction of versatile shuttle vectors that can be maintained, and selected for, in both archaea and bacteria. The primary construct, pAG1, was produced by ligating portions of the archaeal cryptic plasmid pGT5 and the bacterial plasmid pUC19, both of which exhibit high copy numbers. A second vector construct, pAG2, was generated, with a reduced copy number in Escherichia coli, by introducing the Rom/Rop gene from pBR322 into pAG1. After transformation, both pAG1 and pAG2 were stably maintained and propagated in the euryarchaeote Pyrococcus furiosus, the crenarchaeote Sulfolobus acidocaldarius, and in Escherichia coli. An archaeal selective marker, the alcohol dehydrogenase gene from Sulfolobus solfataricus, was isolated by polymerase chain reaction (PCR) amplification and cloned into the two constructs. They were stably maintained and expressed in the two archaea and conferred resistance to butanol and benzyl alcohol. However, the vector pAG21, deriving from pAG2, proved the more stable in E. coli probably due to its lower copy number in the bacterium. Conditions are presented for the use of the vectors which, potentially, can be used for other hyperthermophilic archaea.
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  • 8
    ISSN: 1617-4623
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Summary The binding properties of altered S4 proteins from E. coli revertants from streptomycin dependence to independence were investigated. Three of the proteins with the same length as the wild type protein, from mutants N424, N428 and N430, exhibited unchanged binding and conformational properties. However, three proteins with an altered length, from mutants N422, N425 and N433, bound more weakly to the 16S RNA, and their conformations were different from that of the wild type S4 protein. In the presence of the other 16S RNA binding proteins, no stimulation of the binding of the latter three proteins could be detected.
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  • 9
    Electronic Resource
    Electronic Resource
    Springer
    Molecular genetics and genomics 119 (1972), S. 345-355 
    ISSN: 1617-4623
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Summary Protein S8 occurred in two conformations. A minor component, constituting up to about 30% of the total protein, which bound to 16S RNA at 0°, and a major component which did not bind to the 16S RNA at 0°. The latter could be converted to a binding conformation by heating (E≊12 kcal/mole). The RNA binding site, for most of the RNA population, was stable at 0°, but a minimum Mg++ concentration of 5×10-3 M, and an optimum concentration of 3×10-2 M or higher, was necessary for this stability. Specific binding of protein S8 to 16S RNA occurred over a wide range of K+ concentrations, but below 0.25 M KCl there was some additional non-specific binding, and above 0.35 M KCl there was a gradual decrease in the binding affinity of S8 for 16S RNA. A maximum in the pH dependence binding curve was at pH 7.4 to 8.0.
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  • 10
    Electronic Resource
    Electronic Resource
    Springer
    Molecular genetics and genomics 127 (1973), S. 359-368 
    ISSN: 1617-4623
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Summary The identification of ribosomal proteins that occur at, or near, the subunit interface of the 30S and 50S subunits in the E. coli 70S ribosome was attempted by studying the effect of antibodies on the Mg++ dependent dissociation-association equilibrium of 70S ribosomes. Dissociated ribosomes were mixed with monovalent fragments of IgG antibodies (Fab's) specific for each ribosomal protein and then reassociated into intact 70S particles. Various degrees of inhibition of this reassociation were observed for proteins S9, S11, S12, S14, S20, L1, L6, L14, L15, L19, L20, L23, L26 and L27. A small amount of aggregation of 50S subunits was caused by IgG's specific for the proteins S9, S11, S12, S14 and S20 and purified 50S subunits. It was inferred that the presence of small amounts of these proteins on 50S subunits was compatible with their presence at the subunit interface. Finally, the capacity of proteins S11 and S12 to bind to 23S RNA was demonstrated.
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