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  • 1
    Electronic Resource
    Electronic Resource
    Springer
    Journal of molecular evolution 20 (1984), S. 341-350 
    ISSN: 1432-1432
    Keywords: Heterochromatin ; Highly repeated DNA ; Maize evolution ; Sequence conservation ; Knob cytology
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Summary We have characterised the major DNA sequence component of knob heterochromatin in maize, teosinte andTripsacum. Sequence analysis of this DNA gives strong support to the proposal that maize originated by selection of variants in teosinte. In situ hybridization has confirmed that this repeating DNA sequence, which is the major component of maize knob heterochromatin, is also the major component of knobs in teosinte,Zea diploperennis andTripsacum. In Southern blot hybridizations the repeat has a similar basic organization in all taxa;Tripsacum, however, is differentiated from maize and teosinte by a number of sequence features. Maize and teosinte knob heterochromatin are indistinguishable with regard to the distribution of mutations in the 180-bp repeat and the presence and organization of a 202-bp variant sequence. The knob DNA sequence was not detectable in three species ofCoix, an Old World genus of the Maydeae. Within the repeat unit is a 27-bp region that shows no sequence changes in maize, teosinte orTripsacum. The remainder of the repeat unit has randomly distributed nucleotide changes. The presence of the conserved sequence region suggests that knob DNA may have a functional role in the nucleus.
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  • 2
    Electronic Resource
    Electronic Resource
    Springer
    Journal of molecular evolution 26 (1987), S. 329-334 
    ISSN: 1432-1432
    Keywords: Maize ; Ac ; Ds ; Controlling elements
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Summary Hybridization experiments indicated that the maize genome contains a family of sequences closely related to the Ds1 element originally characterized from theAdh1-Fm335 allele of maize. Examples of these Ds1-related segments were cloned and sequenced. They also had the structural properties of mobile genetic elements, i.e., similar length and internal sequence homology with Ds1, 10- or 11-bp terminal inverted repeats, and characteristic duplications of flanking genomic DNA. All sequences with 11-bp terminal inverted repeats were flanked by 8-bp duplications, but the duplication flanking one sequence with 10-bp inverted repeats was only 6 bp. Similar Ds1-related sequences were cloned fromTripsacum dactyloides. They showed no more divergence from the maize sequences than the individual maize sequences showed when compared with each other. No consensus sequence was evident for the sites at which these sequences had inserted in genomic DNA.
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  • 3
    ISSN: 1432-0886
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Medicine
    Notes: Abstract The 1.708 g/cc satellite DNA of the red necked wallaby is shown to consist of a number of related families of sequences arranged in tandem arrays. Particular families are subpopulations of other families; their distribution supports a model of successive amplification events during the generation of the satellite. In each amplification episode one 2,500 bp unit is multiplied into a tandemly repeated array of that unit (segmental amplification). The 1.708 g/cc sequences can be detected in related kangaroo species in much reduced amount, and with changes to the long order periodicity of the repeat units.
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  • 4
    ISSN: 1432-0983
    Keywords: Key words Glucose oxidase ; Talaromyces ; Verticillium wilt ; Biocontrol
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract The glucose oxidase gene from the biocontrol fungus Talaromyces flavus has been isolated and shown to be only 64% identical at the amino-acid sequence level to the similar enzyme from Aspergillus niger. A transformation system has been developed for both T. flavus and the related T. macrosporus and has been used to create Talaromyces spp. which either over-express or are deficient in glucose oxidase. In vitro inhibition experiments on Verticillium dahliae using culture filtrates from these transformants indicates that secreted glucose oxidase is responsible for a large part of the growth inhibition of V. dahliae microsclerotia and hyphae by T. flavus, although other inhibitory compounds may also play a role. In pot trials with cotton plants, both Talaromyces species had some biocontrol activity, but there was no significant difference in the incidence of Verticillium wilt with either the presence or absence of glucose oxidase activity in the biocontrol fungus. Under the experimental conditions used, insufficient glucose is presumably present in the soil around cotton roots to generate sufficient hydrogen peroxide to inhibit V. dahliae and the observed biocontrol activity must be attributed to other factors.
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  • 5
    Electronic Resource
    Electronic Resource
    Palo Alto, Calif. : Annual Reviews
    Annual Review of Plant Physiology and Plant Molecular Biology 49 (1998), S. 223-247 
    ISSN: 1040-2519
    Source: Annual Reviews Electronic Back Volume Collection 1932-2001ff
    Topics: Biology
    Notes: Abstract Methylation of cytosine residues in DNA provides a mechanism of gene control. There are two classes of methyltransferase in Arabidopsis; one has a carboxy-terminal methyltransferase domain fused to an amino-terminal regulatory domain and is similar to mammalian methyltransferases. The second class apparently lacks an amino-terminal domain and is less well conserved. Methylcytosine can occur at any cytosine residue, but it is likely that clonal transmission of methylation patterns only occurs for cytosines in strand-symmetrical sequences CpG and CpNpG. In plants, as in mammals, DNA methylation has dual roles in defense against invading DNA and transposable elements and in gene regulation. Although originally reported as having no phenotypic consequence, reduced DNA methylation disrupts normal plant development.
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  • 6
    Electronic Resource
    Electronic Resource
    Oxford, UK : Blackwell Publishing Ltd
    Plant, cell & environment 22 (1999), S. 0 
    ISSN: 1365-3040
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Biology
    Notes: The characterization of a full length cytochrome P450 (cyt P450) cDNA clone from Arabidopsis thaliana (CYP83A1) which showed a 2–4-fold transcriptional induction in the shoot apex following a prolonged low temperature treatment is reported. CYP83A1 appears to be encoded by a single copy gene. The gene contains one intron in a position identical to that found in other class A P450 genes. Putative cis-acting elements implicated in the regulation of phenylpropanoid/flavonoid biosynthetic genes (SBF-1, MYB Ph3, and P-MYB) were identified in the promoter region. The coding region was functional in yeast in binding carbon monoxide and tetcyclacis, suggesting that CYP83A1 was produced in its native state enabling it to interact properly with these two cyt P450 inhibitors. However, no activity could be detected when assayed in P450-dependent reactions of gibberellin or phenylpropanoid biosynthesis. Transgenic Arabidopsis plants expressing sense and antisense transcripts did not show any abnormalities or altered flowering time with or without vernalization.
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  • 7
    Electronic Resource
    Electronic Resource
    Oxford, UK : Blackwell Publishing Ltd
    Plant, cell & environment 11 (1988), S. 0 
    ISSN: 1365-3040
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Biology
    Notes: Abstract. We have found haemoglobin in plant roots whereas previously it has been recorded only in nitrogen fixing nodules of plants. Haemoglobin occurs not only in the roots of those plants that are capable of nodulation but also in the roots of species that are not known to nodulate. We suggest that a haemoglobin gene may be a component of the genome of all plants. The gene structure and sequence in two unrelated families of plants suggests that the plant haemoglobins have had a single origin and that this origin relates to the haemoglobin gene of the animal kingdom. At present we cannot completely rule out the possibility of a horizontal transfer of the gene from the animal kingdom to a progenitor of the dicotyledonous angiosperms but we favour a single origin of the gene from a progenitor organism to both the plant and animal kingdoms. We speculate about the possible functions of haemoglobin in plant roots and put the case that it is unlikely to have a function in facilitating oxygen diffusion. We suggest that haemoglobin may act as a signal molecule indicating oxygen deficit and the consequent need to shift plant metabolism from an oxidative to a fermentative pathway of energy generation.
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  • 8
    ISSN: 1432-0886
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Medicine
    Notes: Abstract A study of the chromosomal location and genomic organization of the ribosomal RNA cistrons in the genus Warramaba, involving in situ hybridization and restriction enzyme analysis as well as C- and N-banding and silver staining, has confirmed that the parthenogenetic species W. virgo has two phylads. These phylads appear to have originated independently by hybridization between the precursors of the present day bisexual species “P169” and “P196”. The clones of the Standard phylad of W. virgo have their 18S+26S rDNA cistrons located in C-bands 4, 44 and 49, while those of the Boulder-Zanthus phylad have them in C-bands 50, 74 and 87.5. The relative numbers of the ribosomal genes at the different sites vary greatly from clone to clone and are closely correlated with the width of the corresponding C- and N-bands. Site 49 of the ribosomal cistrons is present as a separate band in the eastern race “A” of P196 but has been incorporated into band 50 in the western race “B” of this species. The former race is assumed to be ancestral to the Standard phylad of W. virgo, the latter to the Boulder-Zanthus phylad, but there has been loss of the 74 and 87.5 sites in the the Standard phylad and the 4 and 44 sites in the Boulder-Zanthus clones. The ribosomal cistrons in W. picta, a species with a primitive karyotype, occur in several sites, only some of which have counterparts in P169 and P196. The 5S rDNA cistrons are located in bands 59.5, 69 and 72.5 in the Standard phylad of W. virgo. — The genomic organization of the 18S+26S rDNA cistrons, as shown by restriction enzyme analysis, is different in the two W. virgo phylads and there are also differences in organization between P196A and P196B. The pattern in P196B and that in the Boulder-Zanthus phylad suggest that they are related. As in the in situ analyses, the genomic organizations of the ribosomal cistrons in both W. virgo phylads are not simply the additive products of those in any known populations of P169 and P196. New repeat lengths indicative of segmental amplification events occur in particular clones of W. virgo. — Throughout the genus Warramaba the N-banding technique stains all bands containing 18S+26S and 5S rDNA cistrons. The Olert silver technique stains band 72.5 in the Standard phylad, but does not correlate with the locations of 18S+26S ribosomal genes.
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  • 9
    ISSN: 1432-0886
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Medicine
    Notes: Abstract The chromosomal locations of ribosomal DNA in wheat, rye and barley have been determined by in situ hybridization using high specific activity 125I-rRNA. The 18S-5.8S-26S rRNA gene repeat units in hexaploid wheat (cv. Chinese Spring) are on chromosomes 1B, 6B and 5D. In rye (cv. Imperial) the repeat units occur at a single site on chromosome 1R(E), while in barley (cv. Clipper) they are on both the chromosomes (6 and 7) which show secondary constrictions. In wheat and rye the major 5S RNA gene sites are close to the cytological secondary constrictions where the 18S-5.8S-26S repeating units are found, but in barley the site is on a chromosome not carrying the other rDNA sequences. — Restriction enzyme and R-loop analyses showed the 18S-5.8S-26S repeating units to be approximately 9.5 kb long in wheat, 9.0 kb in rye and barley to have two repeat lengths of 9.5 kb and 10 kb. Electron microscopic and restriction enzyme data suggest that the two barley forms may not be interpersed. Digestion with EcoR1 gave similar patterns in the three species, with a single site in the 26S gene. Bam H1 digestion detected heterogeneity in the spacer regions of the two different repeats in barley, while in rye and wheat heterogeneity was shown within the 26S coding sequence by an absence of an effective Bam H1 site in some repeat units. EcoR1 and Bam H1 restriction sites have been mapped in each species. — The repeat unit of the 5S RNA genes was approximately 0.5 kb in wheat and rye and heterogeneity was evident. The analysis of the 5S RNA genes emphasizes the homoeology between chromosomes 1B of wheat and 1R of rye since both have these genes in the same position relative to the secondary constriction. In barley we did not find a dominant monomer repeat unit for the 5S genes.
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  • 10
    ISSN: 1432-0886
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Medicine
    Notes: Abstract Cloned highly repeated DNA sequences were used to investigate the origins of W. virgo. The chromosomal and genomic organization of these sequences in the parthenogenetic grasshopper W. virgo and its sexual relatives indicate that W. virgo has had two independent origins. Data from the cloned sequences together with that from rapidly renaturing DNA are consistent with a hybridization event between two sexual species for each origin of the parthenogenetic species. Previously published data on C-banding and other karyotypic features (White and Contreras 1981) strengthen the dual origin conclusion. — The cloned DNA sequences, pWv 1 and pWv 5, have differentiated northern and southern races in the sexual species P196. The southern race appears to have hybridized with another sexual species, P169, to give rise to the Boulder/Zanthus clones of W. virgo. The northern race of P196 may have crossed with a species similar to P169 to give rise to the remaining W. virgo clones which are now present in both eastern and western Australia. White (1980) proposed that the origin of W. virgo was in western Australia and that the eastern populations were established by migration. Consistent with this hypothesis is our finding that the cloned DNA sequences have identical genomic and chromosomal organisation in populations of W. virgo in the two disjunct areas.
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