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  • 1
    Publication Date: 2022-05-26
    Description: Dataset: Hurricane Harvey Coral Gene Expression
    Description: To capture the immediate effects of storm-driven freshwater runoff on coral and symbiont physiology, we leveraged the heavy rainfall associated with Hurricane Harvey in late August 2017 by sampling FGB coral gene expression at two time points: September 2017, when surface water salinity was reduced (∼34 ppt); and 1 month later when salinity had returned to typical levels (∼36 ppt in October 2017). This dataset includes Sequence Read Archive (SRA) and BioSample accessions under BioProject PRJNA552981 at The National Center for Biotechnology Information. It also contains sample information and species names for samples collected the east and west banks of the Flower Garden Banks National Marine Sanctuary (FGBNMS) at 80ft. These data were published in Wright et al. (2019). For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/817298
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1800904
    Repository Name: Woods Hole Open Access Server
    Type: Dataset
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  • 2
    Publication Date: 2024-03-15
    Description: We conducted a 93-day experiment investigating the independent and combined effects of acidification (280−3300 µatm pCO2) and warming (28°C and 31°C) on calcification and linear extension rates of four key Caribbean coral species (Siderastrea siderea, Pseudodiploria strigosa, Porites astreoides, Undaria tenuifolia) from inshore and offshore reefs on the Belize Mesoamerican Barrier Reef System. All species exhibited nonlinear declines in calcification rate with increasing pCO2. Warming only reduced calcification in Ps. strigosa. Of the species tested, only S. siderea maintained positive calcification in the aragonite-undersaturated treatment. Temperature and pCO2 had no effect on the linear extension of S. siderea and Po. astreoides, and natal reef environment did not impact any parameter examined. Results suggest that S. siderea is the most resilient of these corals to warming and acidification owing to its ability to maintain positive calcification in all treatments, Ps. strigosa and U. tenuifolia are the least resilient, and Po. astreoides falls in the middle. These results highlight the diversity of calcification responses of Caribbean corals to projected global change.
    Keywords: Alkalinity, total; Alkalinity, total, standard deviation; Animalia; Aragonite saturation state; Aragonite saturation state, standard deviation; Benthic animals; Benthos; Bicarbonate ion; Bicarbonate ion, standard deviation; Calcification/Dissolution; Calcification rate; Calcite saturation state; Calcite saturation state, standard deviation; Calculated using seacarb after Nisumaa et al. (2010); Calculated using seacarb after Orr et al. (2018); Carbon, inorganic, dissolved; Carbon, inorganic, dissolved, standard deviation; Carbonate ion; Carbonate ion, standard deviation; Carbonate system computation flag; Carbon dioxide; Carbon dioxide, standard deviation; Cnidaria; Coast and continental shelf; Colony number/ID; Containers and aquaria (20-1000 L or 〈 1 m**2); Event label; EXP; Experiment; Experiment duration; Fugacity of carbon dioxide (water) at sea surface temperature (wet air); Fugacity of carbon dioxide in seawater, standard deviation; Identification; Laboratory experiment; Linear extension; Mortality/Survival; North Atlantic; OA-ICC; Ocean Acidification International Coordination Centre; Partial pressure of carbon dioxide, standard deviation; Partial pressure of carbon dioxide (water) at sea surface temperature (wet air); pH; pH, standard deviation; Porites astreoides; Port_Honduras_Marine_Reserve; Pseudodiploria strigosa; Registration number of species; Salinity; Salinity, standard deviation; Sapodilla_Cayes_Marine_Reserve; Siderastrea siderea; Single species; Species; Status; Surface area; Temperature; Temperature, water; Temperature, water, standard deviation; Time in days; Time point, descriptive; Treatment; Tropical; Type; Undaria tenuifolia; Uniform resource locator/link to reference; Zone
    Type: Dataset
    Format: text/tab-separated-values, 110568 data points
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  • 3
    Publication Date: 2024-03-15
    Description: Global change driven by anthropogenic carbon emissions is altering ecosystems at unprecedented rates, especially coral reefs, whose symbiosis with algal symbionts is particularly vulnerable to increasing ocean temperatures and altered carbonate chemistry. Here, we assess the physiological responses of three Caribbean coral (animal host + algal symbiont) species from an inshore and offshore reef environment after exposure to simulated ocean warming (28, 31°C), acidification (300–3290 μatm), and the combination of stressors for 93 days. We used multidimensional analyses to assess how a variety of coral physiological parameters respond to ocean acidification and warming. Our results demonstrate reductions in coral health in Siderastrea siderea and Porites astreoides in response to projected ocean acidification, while future warming elicited severe declines in Pseudodiploria strigosa. Offshore S. siderea fragments exhibited higher physiological plasticity than inshore counterparts, suggesting that this offshore population was more susceptible to changing conditions. There were no plasticity differences in P. strigosa and P. astreoides between natal reef environments, however, temperature evoked stronger responses in both species. Interestingly, while each species exhibited unique physiological responses to ocean acidification and warming, when data from all three species are modelled together, convergent stress responses to these conditions are observed, highlighting the overall sensitivities of tropical corals to these stressors. Our results demonstrate that while ocean warming is a severe acute stressor that will have dire consequences for coral reefs globally, chronic exposure to acidification may also impact coral physiology to a greater extent in some species than previously assumed. Further, our study identifies S. siderea and P. astreoides as potential 'winners' on future Caribbean coral reefs due to their resilience under projected global change stressors, while P. strigosa will likely be a 'loser' due to their sensitivity to thermal stress events. Together, these species-specific responses to global change we observe will likely manifest in altered Caribbean reef assemblages in the future.
    Keywords: Alkalinity, total; Alkalinity, total, standard deviation; Animalia; Aragonite saturation state; Aragonite saturation state, standard deviation; Benthic animals; Benthos; Bicarbonate ion; Biomass/Abundance/Elemental composition; Calcification/Dissolution; Calcification rate of calcium carbonate; Calcite saturation state; Calculated using seacarb after Nisumaa et al. (2010); Carbohydrates per surface area; Carbon, inorganic, dissolved; Carbon, inorganic, dissolved, standard deviation; Carbonate ion; Carbonate system computation flag; Carbon dioxide; Cell density; Chlorophyll a; Cnidaria; Coast and continental shelf; Colony number/ID; Containers and aquaria (20-1000 L or 〈 1 m**2); Coral; Day of experiment; EXP; Experiment; Fugacity of carbon dioxide (water) at sea surface temperature (wet air); Identification; Laboratory experiment; Lipids per surface area; North Atlantic; OA-ICC; Ocean Acidification International Coordination Centre; Other studied parameter or process; Partial pressure of carbon dioxide, standard deviation; Partial pressure of carbon dioxide (water) at sea surface temperature (wet air); pH; pH, standard deviation; Porites astreoides; Port_Honduras_Marine_Reserve; Protein per surface area; Pseudodiploria strigosa; Salinity; Salinity, standard deviation; Sapodilla_Cayes_Marine_Reserve; Siderastrea siderea; Single species; Site; Species, unique identification; Species, unique identification (Semantic URI); Species, unique identification (URI); Surface area; Temperature; Temperature, water; Temperature, water, standard deviation; Treatment; Tropical; Type; Zone
    Type: Dataset
    Format: text/tab-separated-values, 13283 data points
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  • 4
    Publication Date: 2024-03-15
    Description: Rising atmospheric CO2 reduces seawater pH causing ocean acidification (OA). Understanding how resilient marine organisms respond to OA may help predict how community dynamics will shift as CO2 continues rising. The common slipper shell snail Crepidula fornicata is a marine gastropod native to eastern North America that has been a successful invader along the western European coastline and elsewhere. It has also been previously shown to be resilient to global change stressors. To examine the mechanisms underlying C. fornicata's resilience to OA, we conducted two controlled laboratory experiments. First, we examined several phenotypes and genome-wide gene expression of C. fornicata in response to pH treatments (7.5, 7.6, and 8.0) throughout the larval stage and then tested how conditions experienced as larvae influenced juvenile stages (i.e., carry-over effects). Second, we examined genome-wide gene expression patterns of C. fornicata larvae in response to acute (4, 10, 24, and 48 h) pH treatment (7.5 and 8.0). Both C. fornicata larvae and juveniles exhibited resilience to OA and their gene expression responses highlight the role of transcriptome plasticity in this resilience. Larvae did not exhibit reduced growth under OA until they were at least 8 days old. These phenotypic effects were preceded by broad transcriptomic changes, which likely served as an acclimation mechanism for combating reduced pH conditions frequently experienced in littoral zones. Larvae reared in reduced pH conditions also took longer to become competent to metamorphose. In addition, while juvenile sizes at metamorphosis reflected larval rearing pH conditions, no carry-over effects on juvenile growth rates were observed. Transcriptomic analyses suggest increased metabolism under OA, which may indicate compensation in reduced pH environments. Transcriptomic analyses through time suggest that these energetic burdens experienced under OA eventually dissipate, allowing C. fornicata to reduce metabolic demands and acclimate to reduced pH. Carry-over effects from larval OA conditions were observed in juveniles; however, these effects were larger for more severe OA conditions and larvae reared in those conditions also demonstrated less transcriptome elasticity. This study highlights the importance of assessing the effects of OA across life history stages and demonstrates how transcriptomic plasticity may allow highly resilient organisms, like C. fornicata, to acclimate to reduced pH environments.
    Keywords: Alkalinity, total; Alkalinity, total, standard deviation; Animalia; Aragonite saturation state; Aragonite saturation state, standard deviation; Benthic animals; Benthos; Bicarbonate ion; Bicarbonate ion, standard deviation; Bottles or small containers/Aquaria (〈20 L); Calcite saturation state; Calcite saturation state, standard deviation; Calculated using CO2SYS; Calculated using seacarb after Nisumaa et al. (2010); Calculated using seacarb after Orr et al. (2018); Carbon, inorganic, dissolved; Carbon, inorganic, dissolved, standard deviation; Carbonate ion; Carbonate ion, standard deviation; Carbonate system computation flag; Carbon dioxide; Carbon dioxide, standard deviation; Coast and continental shelf; Crepidula fornicata; Day of experiment; Development; Fugacity of carbon dioxide (water) at sea surface temperature (wet air); Fugacity of carbon dioxide in seawater, standard deviation; Gene expression (incl. proteomics); Growth/Morphology; Growth rate; Laboratory experiment; Mollusca; North Pacific; OA-ICC; Ocean Acidification International Coordination Centre; Partial pressure of carbon dioxide, standard deviation; Partial pressure of carbon dioxide (water) at sea surface temperature (wet air); Pelagos; pH; pH, standard deviation; Potentiometric; Potentiometric titration; Proportion; Registration number of species; Salinity; Salinity, standard deviation; Shell length; Single species; Species; Stage; Temperate; Temperature, water; Temperature, water, standard deviation; Treatment; Type; Uniform resource locator/link to reference; Zooplankton
    Type: Dataset
    Format: text/tab-separated-values, 5376 data points
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  • 5
    Publication Date: 2024-03-15
    Description: Global change, including rising temperatures and acidification, threatens corals globally. Although bleaching events reveal fine-scale patterns of resilience, traits enabling persistence under global change remain elusive. We conducted a 95-d controlled-laboratory experiment investigating how duration of exposure to warming (28, 31°C), acidification (pCO2  343 [present day], 663 [end of century], 3109 [extreme] μatm), and their combination influences physiology of reef-building corals (Siderastrea siderea, Pseudodiploria strigosa) from two reef zones on the Belize Mesoamerican Barrier Reef System. Every 30 d, net calcification rate, host protein and carbohydrate, chlorophyll a, and symbiont density were quantified for the same coral individual to characterize acclimation potential under global change. Coral physiologies of the two species were differentially affected by stressors and exposure duration was found to modulate these responses. Siderastrea siderea exhibited resistance to end of century pCO2 and temperature stress, but calcification was negatively affected by extreme pCO2. However, S. siderea calcification rates remained positive after 95 d of extreme pCO2 conditions, suggesting acclimation. In contrast, P. strigosa was more negatively influenced by elevated temperatures, which reduced most physiological parameters. An exception was nearshore P. strigosa, which maintained calcification rates under elevated temperature, suggesting local adaptation to the warmer environment of their natal reef zone. This work highlights how tracking coral physiology across various exposure durations can capture acclimatory responses to global change stressors.
    Keywords: Alkalinity, total; Animalia; Aragonite saturation state; Benthic animals; Benthos; Bicarbonate ion; Calcification/Dissolution; Calcification rate of calcium carbonate; Calcite saturation state; Calculated using seacarb after Nisumaa et al. (2010); Carbohydrates; Carbohydrates, total, standard deviation; Carbon, inorganic, dissolved; Carbonate ion; Carbonate system computation flag; Carbon dioxide; Chlorophyll a; Chlorophyll a per cell; Cnidaria; Coast and continental shelf; Containers and aquaria (20-1000 L or 〈 1 m**2); Day of experiment; Event label; EXP; Experiment; Fugacity of carbon dioxide (water) at sea surface temperature (wet air); Genotype; Growth/Morphology; Identification; Laboratory experiment; Location; Mass change; North Atlantic; Number; Number of cells; OA-ICC; Ocean Acidification International Coordination Centre; Other studied parameter or process; Partial pressure of carbon dioxide (water) at sea surface temperature (wet air); pH; Port_Honduras_Marine_Reserve; Primary production/Photosynthesis; Protein per surface area; Pseudodiploria strigosa; Registration number of species; Sapodilla_Cayes_Marine_Reserve; Siderastrea siderea; Single species; Species; Surface area; Symbiont cell density; Temperature; Temperature, water; Treatment; Tropical; Type; Uniform resource locator/link to reference; Volume
    Type: Dataset
    Format: text/tab-separated-values, 9372 data points
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  • 6
  • 7
    Publication Date: 2017-04-27
    Print ISSN: 0722-4028
    Electronic ISSN: 1432-0975
    Topics: Biology , Geosciences
    Published by Springer
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  • 8
    Publication Date: 2020-07-24
    Print ISSN: 0722-4028
    Electronic ISSN: 1432-0975
    Topics: Biology , Geosciences
    Published by Springer
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  • 9
    Publication Date: 2016-08-18
    Description: Information on connectivity is becoming increasingly in demand as marine protected areas are being designed as an integral part of a network to protect marine resources at the ecosystem level. Larval dispersal and population structure, however, remain very difficult to assess. Here, we tested the predictions of a detailed oceanographic connectivity model of larval dispersal and coral recruitment within Palau and between Palau and Yap, which was developed to support the review of the existing network of marine protected areas in Palau. We used high throughput microsatellite genotyping of the coralAcropora hyacinthusto characterize population genetic structure. PairwiseF′STvalues between Palau and Yap (0.10), Palau and Ngulu (0.09) and Yap and Ngulu (0.09) were all significant and similar to pairwiseF′STvalues of sites within Palau (0.02–0.12) and within Yap (0.02–0.09) highlighting structure at island scale and indicating that recruitment may be even more localized than previously anticipated. A bottleneck test did not reveal any signs of a founder effect between Yap and Palau. Overall, the data supports the idea that recovery ofA. hyacinthusin Palau did not come exclusively from a single source but most likely came from a combination of areas, including sites within Palau. In light of these results there seems to be very little connectivity around the barrier reef and management recommendation would be to increase the number or the size of MPAs within Palau.
    Electronic ISSN: 2167-8359
    Topics: Biology , Medicine
    Published by PeerJ
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  • 10
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