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  • 1
    Keywords: microbial ecology ; biogeochemistry ; stoichiometry ; Climate Change ; soil microbiology ; elemental fluxes ; Respiration ; aquatic microbiology ; microbiology
    Description / Table of Contents: Advances in next generation sequencing technologies, omics, and bioinformatics are revealing a tremendous and unsuspected diversity of microbes, both at a compositional and functional level. Moreover, the expansion of ecological concepts into microbial ecology has greatly advanced our comprehension of the role microbes play in the functioning of ecosystems across a wide range of biomes. Super-imposed on this new information about microbes, their functions and how they are organized, environmental gradients are changing rapidly, largely driven by direct and indirect human activities. In the context of global change, understanding the mechanisms that shape microbial communities is pivotal to predict microbial responses to novel selective forces and their implications at the local as well as global scale. One of the main features of microbial communities is their ability to react to changes in the environment. Thus, many studies have reported changes in the performance and composition of communities along environmental gradients. However, the mechanisms underlying these responses remain unclear. It is assumed that the response of microbes to changes in the environment is mediated by a complex combination of shifts in the physiological properties, single-cell activities, or composition of communities: it may occur by means of physiological adjustments of the taxa present in a community or selecting towards more tolerant/better adapted phylotypes. Knowing whether certain factors trigger one, many, or all mechanisms would greatly increase confidence in predictions of future microbial composition and processes. This Research Topic brings together studies that applied the latest molecular techniques for studying microbial composition and functioning and integrated ecological, biogeochemical and/or modeling approaches to provide a comprehensive and mechanistic perspective of the responses of micro-organisms to environmental changes. This Research Topic presents new findings on environmental parameters influencing microbial communities, the type and magnitude of response and differences in the response among microbial groups, and which collectively deepen our current understanding and knowledge of the underlying mechanisms of microbial structural and functional responses to environmental changes and gradients in both aquatic and terrestrial ecosystems. The body of work has, furthermore, identified many challenges and questions that yet remain to be addressed and new perspectives to follow up on.
    Pages: Online-Ressource (263 Seiten)
    ISBN: 9782889197231
    Language: English
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  • 2
    Publication Date: 2024-04-27
    Description: Samples for bacterial abundance (1.5 mL) were preserved with glutaraldehyde (1% final concentration) and stored at -80°C. Samples were stained with SYBRTM Green I (Thermofisher Scientific) and analyzed on a flow cytometer (FACSCanto, BD Biosciences) as previously described (Gasol & Del Giorgio, 2000; doi:10.3989/scimar.2000.64n2197).
    Keywords: 1_STN01; 1_STN020; 1_STN040; 1_STN0a; 1_STN0b; 1_STN140alt; 1_STN150alt; 1_STN340alt; 1_STN350; 1_STN360; 1_STN370alt; 1_STN380alt; 1_STN540alt; 1_STN550; 1_STN740; 1_STN810; 1_STN830; 1_STN840; 1_STN850; 1_STN860; 1_STN870; 2_STN030; 2_STN040; 2_STN1030; 2_STN1040; 2_STN1050; 2_STN1060; 2_STN110; 2_STN120; 2_STN140alt; 2_STN150alt; 2_STN310; 2_STN320; 2_STN330; 2_STN340alt; 2_STN350; 2_STN360; 2_STN370; 2_STN380alt_2; 2_STN420; 2_STN430; 2_STN450; 2_STN530; 2_STN540alt; 2_STN550; 2_STN565; 2_STN620; 2_STN630; 2_STN740; 2_STN800; 2_STN810; 2_STN820; 2_STN830; 2_STN840; 2_STN850; 2_STN860; 2_STN870; 2_STN999; 2_STNxxx; 2_XX2; 2_XX3; 3_STN010; 3_STN020; 3_STN030; 3_STN040; 3_STN1030; 3_STN1040; 3_STN1050; 3_STN1060; 3_STN125; 3_STN130; 3_STN130_5m; 3_STN135; 3_STN140alt; 3_STN150alt; 3_STN330; 3_STN340alt; 3_STN350; 3_STN360; 3_STN370alt; 3_STN380; 3_STN740; 3_STN800; 3_STN810; 3_STN820; 3_STN830; 3_STN840; 3_STN850; 3_STN860; 3_STN870; 3_STNR01; 3_STNR02; 3_STNR02_5m; 3_STNR03; 3_STNR04; 3_STNR05; 3_STNR06; 3_STNR07; 3_STNR08; 3_STNR09; 3_STNR09_20m; 3_STNR10; 3_STNR11; 3_STNR12; 3_STNR13; 3_STNxxx; 4_STN010; 4_STN020; 4_STN030; 4_STN040; 4_STN1030; 4_STN1040; 4_STN1050; 4_STN120; 4_STN125; 4_STN130; 4_STN135; 4_STN140alt; 4_STN140alt_2; 4_STN150alt; 4_STN330; 4_STN340alt; 4_STN350; 4_STN360; 4_STN370; 4_STN380alt; 4_STN740; 4_STN800; 4_STN810; 4_STN820; 4_STN830; 4_STN840; 4_STN840_2; 4_STN850; 4_STN860; 4_STN870; 4_STNR01; 4_STNR03; 4_STNR04; 4_STNR05; 4_STNR08; 4_STNR09; 4_STNR12; 4_STNXX4; 4_STNXX4_2; Bacteria; biogeochemistry; Biooptics; Coastal waters; Cruise/expedition; DATE/TIME; DEPTH, water; Event label; Flow cytometry; hydrographic data; LATITUDE; LONGITUDE; Mackenzie; Mackenzie Delta, Canada; MULT; Multiple investigations; NUNATARYUK; NUNATARYUK, Permafrost thaw and the changing Arctic coast, science for socioeconomic adaptation; NunaWP4Mackenzie19_1_STN01; NunaWP4Mackenzie19_1_STN020; NunaWP4Mackenzie19_1_STN040; NunaWP4Mackenzie19_1_STN0a; NunaWP4Mackenzie19_1_STN0b; NunaWP4Mackenzie19_1_STN140alt; NunaWP4Mackenzie19_1_STN150alt; NunaWP4Mackenzie19_1_STN340alt; NunaWP4Mackenzie19_1_STN350; NunaWP4Mackenzie19_1_STN360; NunaWP4Mackenzie19_1_STN370alt; NunaWP4Mackenzie19_1_STN380alt; NunaWP4Mackenzie19_1_STN540alt; NunaWP4Mackenzie19_1_STN550; NunaWP4Mackenzie19_1_STN740; NunaWP4Mackenzie19_1_STN810; NunaWP4Mackenzie19_1_STN830; NunaWP4Mackenzie19_1_STN840; NunaWP4Mackenzie19_1_STN850; NunaWP4Mackenzie19_1_STN860; NunaWP4Mackenzie19_1_STN870; NunaWP4Mackenzie19_2_STN030; NunaWP4Mackenzie19_2_STN040; NunaWP4Mackenzie19_2_STN1030; NunaWP4Mackenzie19_2_STN1040; NunaWP4Mackenzie19_2_STN1050; NunaWP4Mackenzie19_2_STN1060; NunaWP4Mackenzie19_2_STN110; NunaWP4Mackenzie19_2_STN120; NunaWP4Mackenzie19_2_STN140alt; NunaWP4Mackenzie19_2_STN150alt; NunaWP4Mackenzie19_2_STN310; NunaWP4Mackenzie19_2_STN320; NunaWP4Mackenzie19_2_STN330; NunaWP4Mackenzie19_2_STN340alt; NunaWP4Mackenzie19_2_STN350; NunaWP4Mackenzie19_2_STN360; NunaWP4Mackenzie19_2_STN370; NunaWP4Mackenzie19_2_STN380alt_2; NunaWP4Mackenzie19_2_STN420; NunaWP4Mackenzie19_2_STN430; NunaWP4Mackenzie19_2_STN450; NunaWP4Mackenzie19_2_STN530; NunaWP4Mackenzie19_2_STN540alt; NunaWP4Mackenzie19_2_STN550; NunaWP4Mackenzie19_2_STN565; NunaWP4Mackenzie19_2_STN620; NunaWP4Mackenzie19_2_STN630; NunaWP4Mackenzie19_2_STN740; NunaWP4Mackenzie19_2_STN800; NunaWP4Mackenzie19_2_STN810; NunaWP4Mackenzie19_2_STN820; NunaWP4Mackenzie19_2_STN830; NunaWP4Mackenzie19_2_STN840; NunaWP4Mackenzie19_2_STN850; NunaWP4Mackenzie19_2_STN860; NunaWP4Mackenzie19_2_STN870; NunaWP4Mackenzie19_2_STN999; NunaWP4Mackenzie19_2_STNxxx; NunaWP4Mackenzie19_2_XX2; NunaWP4Mackenzie19_2_XX3; NunaWP4Mackenzie19_3_STN010; NunaWP4Mackenzie19_3_STN020; NunaWP4Mackenzie19_3_STN030; NunaWP4Mackenzie19_3_STN040; NunaWP4Mackenzie19_3_STN1030; NunaWP4Mackenzie19_3_STN1040; NunaWP4Mackenzie19_3_STN1050; NunaWP4Mackenzie19_3_STN1060; NunaWP4Mackenzie19_3_STN125; NunaWP4Mackenzie19_3_STN130; NunaWP4Mackenzie19_3_STN130_5m; NunaWP4Mackenzie19_3_STN135; NunaWP4Mackenzie19_3_STN140alt; NunaWP4Mackenzie19_3_STN150alt; NunaWP4Mackenzie19_3_STN330; NunaWP4Mackenzie19_3_STN340alt; NunaWP4Mackenzie19_3_STN350; NunaWP4Mackenzie19_3_STN360; NunaWP4Mackenzie19_3_STN370alt; NunaWP4Mackenzie19_3_STN380; NunaWP4Mackenzie19_3_STN740; NunaWP4Mackenzie19_3_STN800; NunaWP4Mackenzie19_3_STN810; NunaWP4Mackenzie19_3_STN820; NunaWP4Mackenzie19_3_STN830; NunaWP4Mackenzie19_3_STN840; NunaWP4Mackenzie19_3_STN850; NunaWP4Mackenzie19_3_STN860; NunaWP4Mackenzie19_3_STN870; NunaWP4Mackenzie19_3_STNR01; NunaWP4Mackenzie19_3_STNR02; NunaWP4Mackenzie19_3_STNR02_5m; NunaWP4Mackenzie19_3_STNR03; NunaWP4Mackenzie19_3_STNR04; NunaWP4Mackenzie19_3_STNR05; NunaWP4Mackenzie19_3_STNR06; NunaWP4Mackenzie19_3_STNR07; NunaWP4Mackenzie19_3_STNR08; NunaWP4Mackenzie19_3_STNR09; NunaWP4Mackenzie19_3_STNR09_20m; NunaWP4Mackenzie19_3_STNR10; NunaWP4Mackenzie19_3_STNR11; NunaWP4Mackenzie19_3_STNR12; NunaWP4Mackenzie19_3_STNR13; NunaWP4Mackenzie19_3_STNxxx; NunaWP4Mackenzie19_4_STN010; NunaWP4Mackenzie19_4_STN020; NunaWP4Mackenzie19_4_STN030; NunaWP4Mackenzie19_4_STN040; NunaWP4Mackenzie19_4_STN1030; NunaWP4Mackenzie19_4_STN1040; NunaWP4Mackenzie19_4_STN1050; NunaWP4Mackenzie19_4_STN120; NunaWP4Mackenzie19_4_STN125; NunaWP4Mackenzie19_4_STN130; NunaWP4Mackenzie19_4_STN135; NunaWP4Mackenzie19_4_STN140alt; NunaWP4Mackenzie19_4_STN140alt_2; NunaWP4Mackenzie19_4_STN150alt; NunaWP4Mackenzie19_4_STN330; NunaWP4Mackenzie19_4_STN340alt; NunaWP4Mackenzie19_4_STN350; NunaWP4Mackenzie19_4_STN360; NunaWP4Mackenzie19_4_STN370; NunaWP4Mackenzie19_4_STN380alt; NunaWP4Mackenzie19_4_STN740; NunaWP4Mackenzie19_4_STN800; NunaWP4Mackenzie19_4_STN810; NunaWP4Mackenzie19_4_STN820; NunaWP4Mackenzie19_4_STN830; NunaWP4Mackenzie19_4_STN840; NunaWP4Mackenzie19_4_STN840_2; NunaWP4Mackenzie19_4_STN850; NunaWP4Mackenzie19_4_STN860; NunaWP4Mackenzie19_4_STN870; NunaWP4Mackenzie19_4_STNR01; NunaWP4Mackenzie19_4_STNR03; NunaWP4Mackenzie19_4_STNR04; NunaWP4Mackenzie19_4_STNR05; NunaWP4Mackenzie19_4_STNR08; NunaWP4Mackenzie19_4_STNR09; NunaWP4Mackenzie19_4_STNR12; NunaWP4Mackenzie19_4_STNXX4; NunaWP4Mackenzie19_4_STNXX4_2; Station label
    Type: Dataset
    Format: text/tab-separated-values, 432 data points
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  • 3
    Publication Date: 2023-08-28
    Description: Climate warming and related drivers of soil thermal change in the Arctic are expected to modify the distribution and dynamics of carbon contained in perennially frozen grounds. Thawing of permafrost in the Mackenzie River watershed of northwestern Canada, coupled with increases in river discharge and coastal erosion, triggers the release of terrestrial organic matter (OMt) from the largest Arctic drainage basin in North America into the Arctic Ocean. While this process is ongoing and its rate is accelerating, the fate of the newly mobilized organic matter as it transits from the watershed through the delta and into the marine system remains poorly understood. In the framework of the European Horizon 2020 Nunataryuk programme, and as part of the Work Package 4 (WP4) Coastal Waters theme, four field expeditions were conducted in the Mackenzie Delta region and southern Beaufort Sea from April to September 2019. The temporal sampling design allowed the survey of ambient conditions in the coastal waters under full ice cover prior to the spring freshet, during ice breakup in summer, and anterior to the freeze-up period in fall. To capture the fluvial-marine transition zone, and with distinct challenges related to shallow waters and changing seasonal and meteorological conditions, the field sampling was conducted in close partnership with members of the communities of Aklavik, Inuvik and Tuktoyaktuk, using several platforms, namely helicopters, snowmobiles, and small boats. Water column profiles of physical and optical variables were measured in situ, while surface water, groundwater, and sediment samples were collected and preserved for the determination of the composition and sources of OMt, including particulate and dissolved organic carbon (POC and DOC), and colored dissolved organic matter (CDOM), as well as a suite of physical, chemical, and biological variables. Here we present an overview of the standardized datasets, including hydrographic profiles, remote sensing reflectance, temperature and salinity, particle absorption, nutrients, dissolved organic carbon, particulate organic carbon, particulate organic nitrogen, CDOM absorption, fluorescent dissolved organic matter intensity, suspended particulate matter, total particulate carbon, total particulate nitrogen, stable water isotopes, radon in water, bacterial abundance, and a string of phytoplankton pigments including total chlorophyll. Datasets and related metadata can be found in (10.1594/PANGAEA.937587).
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , isiRev
    Format: application/pdf
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  • 4
    Publication Date: 2014-05-08
    Print ISSN: 0013-936X
    Electronic ISSN: 1520-5851
    Topics: Chemistry and Pharmacology , Energy, Environment Protection, Nuclear Power Engineering
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  • 5
    Publication Date: 2014-09-26
    Description: Article Climate change is causing many species to shift their distributional ranges. Here, Comte et al. show that, among stream fish, shifts at the leading edge and the trailing edge of the range are influenced by different mechanisms related to individual species traits and their phylogenetic history. Nature Communications doi: 10.1038/ncomms6053 Authors: Lise Comte, Jérôme Murienne, Gaël Grenouillet
    Electronic ISSN: 2041-1723
    Topics: Biology , Chemistry and Pharmacology , Natural Sciences in General , Physics
    Published by Springer Nature
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  • 6
    Publication Date: 2018-04-11
    Description: Publisher Correction: Species traits and phylogenetic conservatism of climate-induced range shifts in stream fishes Publisher Correction: Species traits and phylogenetic conservatism of climate-induced range shifts in stream fishes, Published online: 10 April 2018; doi:10.1038/ncomms16201 Publisher Correction: Species traits and phylogenetic conservatism of climate-induced range shifts in stream fishes
    Electronic ISSN: 2041-1723
    Topics: Biology , Chemistry and Pharmacology , Natural Sciences in General , Physics
    Published by Springer Nature
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  • 7
    Publication Date: 2013-01-01
    Electronic ISSN: 1664-302X
    Topics: Biology
    Published by Frontiers Media
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  • 8
    Publication Date: 2015-12-02
    Electronic ISSN: 1664-302X
    Topics: Biology
    Published by Frontiers Media
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  • 9
    Publication Date: 2016-05-16
    Electronic ISSN: 1932-6203
    Topics: Medicine , Natural Sciences in General
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  • 10
    Publication Date: 2017-11-28
    Electronic ISSN: 1932-6203
    Topics: Medicine , Natural Sciences in General
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