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  • 1
    Electronic Resource
    Electronic Resource
    Springer
    Archives of microbiology 155 (1991), S. 170-176 
    ISSN: 1432-072X
    Keywords: Chromatiaceae ; Thiocapsa ; Okenone ; Hypersaline environment ; Halophilic bacteria ; Microbial mats
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract A new phototrophic sulfur bacterium has been isolated from a red layer in a laminated mat occurring underneath a gypsum crust in the mediterranean salterns of Salin-de-Giraud (Camargue, France). Single cells were coccus-shaped, non motile, without gas vacuoles and contained sulfur globules. Bacteriochlorophyll a and okenone were present as major photosynthetic pigments. These properties and the G+C content of DNA (65.9–66.6 mol% G+C) are typical characteristics of the genus Thiocapsa. However, the new isolate differs from known species in the genus, particularly in NaCl requirement (optimum, 7% NaCl; range, 3–20% NaCl) and some physiological characteristics. Therefore, a new species is proposed, Thiocapsa halophila, sp. nov.
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  • 2
    Electronic Resource
    Electronic Resource
    Oxford, UK : Blackwell Publishing Ltd
    FEMS microbiology letters 38 (1986), S. 0 
    ISSN: 1574-6968
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Biology
    Notes: Abstract In the shallow lagoon of Prévost (43°30′N, 3°54′E; French Mediterranean coast), red waters occurring periodically during warm summers are a consequence of a succession of ecological events beginning in the early spring with a bloom of algae (Ulva lactuca). In summer 1977, a red water was analyzed; in the early summer, the water turned anoxic and became rich in sulfide which originated from sulfate reduction in the first 10 cm of the sediment. Numbers of both phototrophic and sulfate-reducing bacteria (SRB) increased during spring and summer, and the genera in the prevailing populations did not change: Thiocapsa (80%) among the phototrophic bacteria and Desulfovibrio and Desulfobacter among the SRB. They were also dominant during the period of red waters. A few Chromatium and Thiocystis species were also identified. During red water periods, these bacteria grew very actively, removing all the sulfide produced by SRB, and accumulated in the whole water column. Consequently, the sulfate level increased to 5 mmol·1−1 higher than the theoretical sulfate level calculated from salinity, showing the active oxidation of sulfide by phototrophic bacteria. After the dystrophic crisis, oxic conditions were reestablished and the phototrophic bacterial biomass was partly grazed by zoobenthos organisms which densely populated the sediment surface.
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  • 3
    ISSN: 1574-6968
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Biology
    Notes: Abstract Increasing NaCl concentrations in the growth medium inhibited the growth of Desulfovibrio halophilus due to both an increase in the lag phase of growth and a reduction in the specific growth rate. Addition of 1 mM glycine betaine to the growth medium partially relieved this inhibition. Natural abundance 13C nuclear magnetic resonance spectroscopy identified the disaccharide α-α trehalose and glycine betaine as the major organic solutes accumulated by D. halophilus during growth in mineral salts medium and mineral salts medium supplemented with 1 mM glycine betaine, respectively. The presence of a weak glycine betaine transport system was confirmed by following the accumulation of [methyl-14C]glycine betaine during osmotic upshock. In the absence of exogenous glycine betaine the intracellular trehalose concentration of D. halophilus was dependent upon the osmolarity of the growth medium, with a maximum concentration of 8.3 μmol trehalose mg protein−1 recorded in cultures grown in the presence of 15% w/v NaCl. Intracellular K+ concentrations were also dependent upon the osmolarity of the growth medium over the range 3–9% w/v NaCl, but showed little further increase at higher NaCl concentrations.
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  • 4
    ISSN: 1574-6941
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Biology
    Notes: A photosynthetic microbial mat was investigated in a large pond of a Mediterranean saltern (Salins-de-Giraud, Camargue, France) having water salinity from 70‰ to 150‰ (w/v). Analysis of characteristic biomarkers (e.g., major microbial fatty acids, hydrocarbons, alcohols and alkenones) revealed that cyanobacteria were the major component of the pond, in addition to diatoms and other algae. Functional bacterial groups involved in the sulfur cycle could be correlated to these biomarkers, i.e. sulfate-reducing, sulfur-oxidizing and anoxygenic phototrophic bacteria. In the first 0.5 mm of the mat, a high rate of photosynthesis showed the activity of oxygenic phototrophs in the surface layer. Ten different cyanobacterial populations were detected with confocal laser scanning microscopy: six filamentous species, with Microcoleus chthonoplastes and Halomicronema excentricum as dominant (73% of total counts); and four unicellular types affiliated to Microcystis, Chroococcus, Gloeocapsa, and Synechocystis (27% of total counts). Denaturing gradient gel electrophoresis of PCR-amplified 16S rRNA gene fragments confirmed the presence of Microcoleus, Oscillatoria, and Leptolyngbya strains (Halomicronema was not detected here) and revealed additional presence of Phormidium, Pleurocapsa and Calotrix types. Spectral scalar irradiance measurements did not reveal a particular zonation of cyanobacteria, purple or green bacteria in the first millimeter of the mat. Terminal-restriction fragment length polymorphism analysis of PCR-amplified 16S rRNA gene fragments of bacteria depicted the community composition and a fine-scale depth-distribution of at least five different populations of anoxygenic phototrophs and at least three types of sulfate-reducing bacteria along the microgradients of oxygen and light inside the microbial mat.
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  • 5
    ISSN: 1574-6968
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Biology
    Notes: Tributyltin (TBT) is a toxic agent used in marine antifouling paints. Among the bacterial flora of a polluted harbor, TBT-resistant strains of Pseudomonas stutzeri have been isolated. In the strain 5MP1 (TBT minimum inhibitory concentration (MIC) ≥1000 mg l−1), TBT resistance was found to be associated with the presence of the operon tbtABM, homologous to the resistance–nodulation–cell division (RND) efflux pump family, as demonstrated by cloning in Escherichia coli. TbtABM exhibited the greatest homology (60.9–84.9%) with the TtgDEF and SrpABC systems, both involved in aromatic compound tolerance in P. putida. TbtABM conferred multidrug resistance (MDR) including to n-hexane, nalidixic acid, chloramphenicol, and sulfamethoxazole (antibiotic MICs×4 for the E. coli host strain carrying the operon). By polymerase chain reaction amplification and hybridization experiments, the presence of tbtABM was detected in the TBT-sensitive P. stutzeri 3MP1 (TBT MIC 25 mg l−1). However, the latter strain did not seem to express TbtABM. This is the first description of a MDR efflux pump in P. stutzeri, and of a new kind of substrate, TBT, for the RND family of transporters.
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  • 6
    Electronic Resource
    Electronic Resource
    Oxford, UK : Blackwell Publishing Ltd
    FEMS microbiology ecology 20 (1996), S. 0 
    ISSN: 1574-6941
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Biology
    Notes: Abstract: The growth of phototrophic sulfur bacteria in benthic systems is restricted to well-defined layers within the sedimentary oxygen, sulfide, pH and light gradients. In order to culture these microorganisms under more ecologically relevant conditions, we have developed a Benthic Gradient Chamber (BGC) in which phototrophic sulfur bacteria can be grown within experimentally imposed solute and light gradients. The new autoclavable device is composed of a reconstituted sand core sandwiched in between a lower anoxic sulfide-containing compartment and an upper oxic compartment. The core can be illuminated from above by a collimated light beam. An axenic biofilm of Thiocapsa roseopersicina strain EP 2204 developed from a tiny inoculum within the sand core, using a 5-week incubation period and a 16:8 h light/dark illumination regime. The metabolic activities in this biofilm were inferred from the analyses of oxygen, sulfide and pH profiles, and their shifts during light-dark cycles.
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  • 7
    ISSN: 1574-6941
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Biology
    Notes: Small-subunit (16S) ribosomal DNA clone libraries were constructed using DNA isolated from the anoxic sediments underlying the cyanobacterial mats from two sampling stations of different salinity (Station A, 150–200‰ salinity; Station B, 250–320‰ salinity) located in the Mediterranean salterns of Salin-de-Giraud (France). Previous studies have shown that the mats at these two sites differ greatly in physicochemical and microbial composition. Sequence analysis of the clone libraries indicated that prokaryotic diversity was high in the sediments from both stations, in both the Bacteria and Archaea domains. Clones related to the α- and δ-Proteobacteria (phylum Proteobacteria), the strictly anaerobic fermentative bacteria (phylum Firmicutes), and the Cytophaga-Flavobacterium-Bacteroides (CFB) group (phylum Bacteroidetes) were found in the libraries from both sediments and accounted for the majority of Bacteria domain clones. The results indicated that the populations of δ-Proteobacteria (principally sulfate-reducing bacteria) were significantly different in the two sediments. In addition, several clones from Station A were related either to the γ-Proteobacteria (phylum Proteobacteria) or to the Spirochaeta, whereas the library from Station B contained several clones related to the uncultured, deep-branching ‘KTK group’ of Bacteria. Among the Archaea domain clones, all from Station B and the majority from Station A were related to the order Halobacteriales (phylum Euryarchaeota, class Halobacteria). In addition, 12% of the Archaea domain clones from Station A were related to the Methanococci group (phylum Euryarchaeota, class Methanobacteria) and 32% to the phylum Crenarchaeota. This study represents the first molecular analysis of the diversity of halophilic prokaryotes present in these sediments and the results are discussed in the light of our current knowledge of the microbial ecology of these hypersaline ecosystems.
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  • 8
    ISSN: 1573-5117
    Keywords: Coastal lagoons ; eutrophication ; macrophytes ; microorganisms ; nitrogen cycle ; sulphur cycle
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract The conditions of eutrophication are described in three lagoon systems differing by their structure, their catchment area and their connection with the sea: the Bassin d'Arcachon on the Atlantic coast, SW France, the semi-artificial fish ponds of the Bassin d'Arcachon, and the Étang du Prévost on the Mediterranean. The Bassin d'Arcachon is a shallow semi-enclosed bay, strongly influenced by climatic factors and tidal currents. The Bassin receives significant inflow of freshwater and the waters are only partially renewed. The greatest part of the primary production is due to the seagrass Zostera noltii. Although the ecosystem remains on the whole in steady state, some evidence of potential eutrophication are visible. For instance, the flux of nitrogen into the Bassin d'Arcachon has increased by more than 50% during the last 25 years. The most significant change among primary producers is the massive development since 1988 of the green alga Monostroma obscurum. The fish ‘reservoirs’ of the Bassin d'Arcachon are man-made enclosures designed for extensive aquaculture and where the water renewal is only possible during certain periods of time. Thus, because of the shallowness and the confined nature of these fish ponds, acute eutrophication is sometimes observed in summer. The Étang du Prevost is extremely eutrophic due to agricultural and urban run-off. Red waters occur periodically during the warm summer months as a consequence of ecological events beginning in the early spring with a bloom of green macroalgae (Ulva sp.). In summer, the algal biomass is degraded by aerobic heterotrophic bacteria; the oxygen demand encompasses the oxygen production, leading to the predominence of anaerobic processes and dystrophic crisis. From the comparison of the selected sites, three stages of eutrophication are recognized according to the conceptual model of Nienhuis (1992) describing the relation between the relative dominance of primary producers connected to the availability of nutrients. Such macroscopic observations should, now, be explained by the study of microbiological processes including meiofauna, protozoa, bacteria and all the components of the microbial loop.
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  • 9
    ISSN: 1573-5117
    Keywords: bacterial vertical distribution ; stratified lagoon ; phototrophic bacteria ; zooplankton feeding
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract During the period of September–November 1981, a stratified condition was observed in Biétri Bay, a part of Ebrié Lagoon (Ivory Coast, Africa). The epilimnion was oxidised and in the hypolimnion, high concentrations of hydrogen sulfide were noted (200–400 mg · l−1). At the surface of the hypolimnion, a large population of phototrophic bacteria developed, constituting a brown layer composed of the purple and green bacteria Rhodopseudomonas sp., Chromatium gracile, Chlorobium vibrioforme, C. phaeobacteroides and Pelodictyon sp. These bacteria can be considered as particulate organic matter producers. Their production is estimated at about 1 530 mg C · m−2 · day−1. In the epilimnion, the algal production is 2 200 mg C · m−2 · day−1. Therefore, phototrophic bacterial production represented 41% of the total photosynthetic production. In the epilimnion, the zooplankton community (composed of copepods, rotifers and some cyclopids) was particularly concentrated near the chemocline where only low concentration of dissolved oxygen was available. Analysis of gut contents of the copepod Acartia clausi, which is the dominant species of the zooplankton, shows the importance of phototrophic bacteria and especially Rhodospirillaceae and Chromatium in its diet. This copepod seems to prefer phototrophic bacteria to both heterotrophic bacteria and phytoplancton. The vertical migration of the zooplankton community is partly conditioned by the search for nutrients i.e. phototrophic bacteria. Thus, bacteria contribute to the first trophic level of the food chain in this lagoon. Since they derive part of their energy from organic matter formed by primary producers, they cannot be considered as pure primary producers. However, in respect to the food chain they form food material for secondary producers (zooplankton).
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  • 10
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