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  • 1
    Electronic Resource
    Electronic Resource
    College Park, Md. : American Institute of Physics (AIP)
    The Journal of Chemical Physics 110 (1999), S. 4369-4381 
    ISSN: 1089-7690
    Source: AIP Digital Archive
    Topics: Physics , Chemistry and Pharmacology
    Notes: We report the measurement of two new perpendicular (D2O)3 torsional bands by terahertz laser vibration–rotation–tunneling (VRT) spectroscopy of a planar pulsed supersonic expansion. The first (28.0 cm−1) band corresponds to the k=±2l←0 transition, and is the lowest frequency vibrational spectrum observed for a water cluster. The second (81.8 cm−1) band originates in the first excited torsional state, and has been assigned as k=3u←±1l. An effective three-dimensional Hamiltonian is derived to describe the rotational structure of each torsional state. Degenerate torsional levels with k=±1 and k=±2 exhibit a Coriolis splitting linear in K implying the presence of vibrational angular momentum, and a second-order splitting from off-diagonal coupling between degenerate sublevels with +|k| and −|k|. With this effective Hamiltonian we fit a total of 554 rovibrational transitions in five different bands connecting the lowest nine torsional states, with a rms residual of 1.36 MHz. The data set comprises the two new VRT bands together with the 41.1 cm−1 parallel band, the 89.6 cm−1 parallel band, and the 98.1 cm−1 perpendicular band. This analysis provides a comprehensive characterization of the torsional energy levels in (D2O)3 up to 100 cm−1 above the zero-point energy, and confirms the torsional assignments for all five (D2O)3 VRT bands observed to date. Moreover, it vindicates the adiabatic separation of the trimer torsional and hydrogen bond stretch/bend vibrational modes which underlies the torsional model. © 1999 American Institute of Physics.
    Type of Medium: Electronic Resource
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  • 2
    ISSN: 1089-7690
    Source: AIP Digital Archive
    Topics: Physics , Chemistry and Pharmacology
    Notes: We report the measurement of two new (H2O)3 bands by terahertz laser vibration–rotation–tunneling (VRT) spectroscopy. Both bands have been assigned to torsional ("pseudorotational") transitions and are highly perturbed by Coriolis interactions. The 42.9 cm−1 band corresponds to the k=±2←±1 transition while the 65.6 cm−1 band corresponds to the k=±2←0 transition. A model Hamiltonian is derived which allowed a global fit of 361 VRT transitions of these two new bands and the previously reported torsional band at 87.1 cm−1. Each of the bifurcation tunneling components is accurately described. This global fit represents a complete description of the VRT transitions of (H2O)3 up to 150 cm−1, and complements our similar treatment of the (D2O)3 torsional dynamics. © 1999 American Institute of Physics.
    Type of Medium: Electronic Resource
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  • 3
    Electronic Resource
    Electronic Resource
    College Park, Md. : American Institute of Physics (AIP)
    The Journal of Chemical Physics 103 (1995), S. 9502-9505 
    ISSN: 1089-7690
    Source: AIP Digital Archive
    Topics: Physics , Chemistry and Pharmacology
    Notes: A new high-temperature pulsed slit jet source has enabled the first observation of a rotationally resolved vibrational spectrum of a nucleotide base. The spectrum, centered at 1703.888 cm−1, has been assigned to the fundamental out-of-phase mixed carbonyl stretching vibration of the diketo tautomer of uracil, clarifying an ambiguous assignment from low-resolution studies. © 1995 American Institute of Physics.
    Type of Medium: Electronic Resource
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  • 4
    ISSN: 1089-7623
    Source: AIP Digital Archive
    Topics: Physics , Electrical Engineering, Measurement and Control Technology
    Notes: We report the design and performance of a pulsed slit valve for generation of supersonically cooled species in a long path length planar expansion. Utilizing three commercial solenoids driven synchronously by an economic power transistor circuit, the valve produces pulses adjustable in width from 500 to 1000 μs with a repetition rate up to 80 Hz. The pulsed valve can be operated continuously for 12 h, and operation over one month is typical before major maintenance is required. The path length × density product attained by this pulsed source is sufficient for observing large cluster species, such as the water hexamer, on our far-infrared spectrometer. With the addition of a detachable sample oven, it can also be heated up to 230 °C to inject nonvolatile molecules into planar supersonic expansions. © 1996 American Institute of Physics.
    Type of Medium: Electronic Resource
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  • 5
    Electronic Resource
    Electronic Resource
    College Park, Md. : American Institute of Physics (AIP)
    The Journal of Chemical Physics 102 (1995), S. 2379-2403 
    ISSN: 1089-7690
    Source: AIP Digital Archive
    Topics: Physics , Chemistry and Pharmacology
    Notes: We have measured and interpreted a microwave spectrum of the HeAr+ ion in which all of the observed energy levels lie within 8 cm−1 of the lowest dissociation limit, He(1S)+Ar+(2P3/2). We use an ion beam technique in which the HeAr+ ions are formed by electron impact, accelerated to kilovolt potentials, and mass-analyzed. After passage through an appropriate section of waveguide, the ions enter an electric field lens in which state-selective fragmentation occurs; the Ar+ ions produced in the lens are separated from all other ions by means of an electrostatic analyser and detected with an electron multiplier. Microwave transitions induced in the waveguide section result in population transfer which produces detected changes in the electric field-induced Ar+ fragment current. Many transitions have also been observed by a microwave–microwave double resonance technique. We have observed 68 lines spanning the frequency range 6–170 GHz; no immediately recognizable pattern is apparent. We have measured the Zeeman splitting produced by a small axial magnetic field for almost every line, which enables us to determine the values of the total angular momentum J involved in each transition, and also effective g factors for the two levels involved. We are therefore able to construct a purely experimental pattern of 37 levels lying within 8 cm−1 of the dissociation limit. The data are treated first by means of a conventional effective Hamiltonian in a case (c) basis, which allows electronic and vibrational quantum numbers to be assigned to most of the levels; the assignments are approximate, however, because very strong rotational-electronic coupling undermines the Born–Oppenheimer approximation.A more complete theoretical treatment is then presented, using the coupled-channel method in a case (e) representation to calculate the energy levels without making the Born–Oppenheimer approximation. The microwave transition frequencies and g-factors are fitted, together with earlier ultraviolet spectra, to provide a new interaction potential (designated MAL1) for He interacting with Ar+(2P3/2 and 2P1/2). The MAL1 potential is substantially more accurate than previous potentials, especially in the long-range region and for the A1 2Π3/2 state, which had not been observed before. An important new feature of the MAL1 potential is that the long-range C6 coefficient is strongly anisotropic, so that the different electronic curves have substantially different C6 coefficients. © 1995 American Institute of Physics.
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  • 6
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    Unknown
    PANGAEA
    In:  Supplement to: Ellis, Robert P; Spicer, John I; Byrne, Jonathan J; Sommer, Ulf; Viant, Mark R; White, Daniel; Widdicombe, Steve (2014): 1H NMR Metabolomics Reveals Contrasting Response by Male and Female Mussels Exposed to Reduced Seawater pH, Increased Temperature, and a Pathogen. Environmental Science & Technology, 48(12), 7044-7052, https://doi.org/10.1021/es501601w
    Publication Date: 2024-03-15
    Description: Human activities are fundamentally altering the chemistry of the world's oceans. Ocean acidification (OA) is occurring against a background of warming and an increasing occurrence of disease outbreaks, posing a significant threat to marine organisms, communities, and ecosystems. In the current study, 1H NMR spectroscopy was used to investigate the response of the blue mussel, Mytilus edulis, to a 90-day exposure to reduced seawater pH and increased temperature, followed by a subsequent pathogenic challenge. Analysis of the metabolome revealed significant differences between male and female organisms. Furthermore, males and females are shown to respond differently to environmental stress. While males were significantly affected by reduced seawater pH, increased temperature, and a bacterial challenge, it was only a reduction in seawater pH that impacted females. Despite impacting males and females differently, stressors seem to act via a generalized stress response impacting both energy metabolism and osmotic balance in both sexes. This study therefore has important implications for the interpretation of metabolomic data in mussels, as well as the impact of environmental stress in marine invertebrates in general.
    Keywords: Alkalinity, total; Alkalinity, total, standard error; Animalia; Aragonite saturation state; Aragonite saturation state, standard error; Benthic animals; Benthos; Bicarbonate ion; Bottles or small containers/Aquaria (〈20 L); Calcite saturation state; Calcite saturation state, standard error; Calculated using CO2SYS; Calculated using seacarb after Nisumaa et al. (2010); Carbon, inorganic, dissolved; Carbonate ion; Carbonate system computation flag; Carbon dioxide; Coast and continental shelf; Fugacity of carbon dioxide (water) at sea surface temperature (wet air); Individuals; Laboratory experiment; Mollusca; Mortality; Mortality/Survival; Mytilus edulis; North Atlantic; OA-ICC; Ocean Acidification International Coordination Centre; Partial pressure of carbon dioxide (water) at sea surface temperature (wet air); Partial pressure of carbon dioxide (water) at sea surface temperature (wet air), standard error; pH; pH, standard error; Potentiometric; Potentiometric titration; Salinity; Salinity, standard error; Single species; Species; Temperate; Temperature; Temperature, water; Temperature, water, standard error
    Type: Dataset
    Format: text/tab-separated-values, 290 data points
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  • 7
    Publication Date: 2024-03-15
    Description: Physiological responses to temperature are known to be a major determinant of species distributions and can dictate the sensitivity of populations to global warming. In contrast, little is known about how other major global change drivers, such as ocean acidification (OA), will shape species distributions in the future. Here, by integrating population genetics with experimental data for growth and mineralization, physiology and metabolomics, we demonstrate that the sensitivity of populations of the gastropod Littorina littorea to future OA is shaped by regional adaptation. Individuals from populations towards the edges of the natural latitudinal range in the Northeast Atlantic exhibit greater shell dissolution and the inability to upregulate their metabolism when exposed to low pH, thus appearing most sensitive to low seawater pH. Our results suggest that future levels of OA could mediate temperature-driven shifts in species distributions, thereby influencing future biogeography and the functioning of marine ecosystems.
    Keywords: Adenosine 5-Triphosphate; Alkalinity, total; Alkalinity, total, standard error; Animalia; Aragonite saturation state; Aragonite saturation state, standard error; Benthic animals; Benthos; Bicarbonate ion; Bicarbonate ion, standard error; Calcification/Dissolution; Calcite saturation state; Calcite saturation state, standard error; Calcium; Calcium/Strontium ratio; Calculated using CO2SYS; Calculated using seacarb after Nisumaa et al. (2010); Carbon, inorganic, dissolved; Carbon, inorganic, dissolved, standard error; Carbonate ion; Carbonate ion, standard error; Carbonate system computation flag; Carbon dioxide; Change; Coast and continental shelf; Containers and aquaria (20-1000 L or 〈 1 m**2); Experiment duration; Fugacity of carbon dioxide (water) at sea surface temperature (wet air); Growth/Morphology; Laboratory experiment; Latitude, additional; Littorina littorea; Magnesium; Magnesium/Calcium ratio; Magnesium/Strontium ratio; Mollusca; North Atlantic; OA-ICC; Ocean Acidification International Coordination Centre; Oxygen; Oxygen, standard error; Partial pressure of carbon dioxide (water) at sea surface temperature (wet air); Partial pressure of carbon dioxide (water) at sea surface temperature (wet air), standard error; pH; pH, standard error; Polar; Potassium; Potentiometric; Potentiometric titration; Registration number of species; Respiration; Respiration rate, oxygen, per wet mass; Salinity; Salinity, standard error; Single species; Species; Strontium; Temperate; Temperature, water; Temperature, water, standard error; Treatment; Type; Uniform resource locator/link to reference
    Type: Dataset
    Format: text/tab-separated-values, 7410 data points
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  • 8
    Publication Date: 2024-04-20
    Description: Platynereis spp. were collected via snorkelling or scuba from either inside (40°43′53″N, 13°57′47″E) or outside (40°43'33.33N, 13°57'36.38E and 40°44′48″N, 13°56′39″E) the carbon dioxide (CO2) vent on the island of Ischia (Italy) and used in a reciprocal transplant experiment. The effect of exposure to high or low partial pressures of CO2 (pCO2) conditions on the metabolome (metabolome, and lipidome) of worms from different pCO2 regimes was investigated to understand the effect of exposure to different pCO2 conditions on the cellular physiological response. This experiment was conducted between 04/09/2013 and 16/09/2013. The experiment was staggered during this time so all worms could be processed. After five days exposure to either low or high CO2 conditions worms were snap frozen in liquid nitrogen and shipped to the University of Birmingham for metabolomic analysis which was finalised on 21/01/2016. Metabolomic profiles of worms were characterised using a mass spectrometry approach. A standard mass spectrometry based metabolomics workflow was used to analyse both the polar and lipid extracts from the samples (Kirwan et al. 2014). Raw mass spectral data were processed using the SIM-stitching algorithm, using an in-house Matlab script. The data matrices were normalized using the PQN algorithm. Missing values were imputed using the KNN algorithm. The resulting data matrix was analysed using univariate statistics, described below. The same matrix was transformed using the generalised logarithm to stabilise the technical variance across the measured peaks prior to analysis using multivariate statistics. Signals were putatively annotated with empirical formulae calculated by the MIPack software (Weber et al. 2010), searching the KEGG (Kanehisa et al. 2012) and LipidMaps (Fahy et al. 2007) databases, and confirmed by performing calculations based on the original spectra in Xcalibur 2.0.7 (Thermo Fisher Scientific).
    Keywords: ASSEMBLE_Plus; Association of European Marine Biological Laboratories Expanded; Binary Object; Binary Object (File Size); Castello_Aragonese_A1; Castello_Aragonese_A2; Castello_Aragonese_A3; Castello Aragonese; EXP; Experiment; File content; Punta_San_Pietro_C1; Punta_San_Pietro_C2; Punta_San_Pietro_C3; Punta San Pietro
    Type: Dataset
    Format: text/tab-separated-values, 12 data points
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  • 9
    Publication Date: 2024-04-20
    Description: Platynereis spp. were collected via snorkelling or scuba from either inside (40°43′53″N, 13°57′47″E) (stations A1-A3) or outside (40°43'33.33"N, 13°57'36.38"E and 40°44′48″N, 13°56′39″E) (stations C1-C3) the carbon dioxide (CO2) vent on the island of Ischia (Italy) and used in a reciprocal transplant experiment between 04/09/2013 and 16/09/2013. The effect of exposure to high or low partial pressures of CO2 (pCO2) conditions on the proteome and metabolome (metabolome, and lipidome) of worms from different pCO2 regimes was investigated to understand the effect of exposure to different pCO2 conditions on the cellular physiological response. Before and during the transplant experiment water samples were taken to characterise the physio-chemical parameters of sea water used when exposing the worms to: (i) low pCO2 conditions (‘control’ stations C1, C2 and C3) and (ii) high pCO2 conditions (‘acidified’ stations A1, A2, A3). Salinity, temperature, pH NBS (Mettler-Toledo pH meter, Beaumont Leys, UK), total alkalinity (TA) (AS-ALK2, Apollo SciTech, Bogart, USA), dissolved inorganic carbon (DIC), carbon dioxide partial pressure (pCO2), bicarbonate and carbonate ion concentration ([HCO3–] and [CO32–), calcite and aragonite saturation state (Ωcal and Ωara) are provided.
    Keywords: Alkalinity, total; Aragonite saturation state; ASSEMBLE_Plus; Association of European Marine Biological Laboratories Expanded; Bicarbonate ion; Calcite saturation state; Carbon, inorganic, dissolved; Carbonate ion; Carbon dioxide, partial pressure; Castello_Aragonese_A1; Castello_Aragonese_A2; Castello_Aragonese_A3; Castello Aragonese; DATE/TIME; DEPTH, water; Event label; EXP; Experiment; Genus, unique identification; Genus, unique identification (Semantic URI); Genus, unique identification (URI); LATITUDE; Location; LONGITUDE; Method comment; pH; pH meter, Mettler Toledo, Beaumont Leys, UK; Punta_San_Pietro_C1; Punta_San_Pietro_C2; Punta_San_Pietro_C3; Punta San Pietro; Salinity; Species; Station label; Temperature, water; Total Alkalinity Titrator, AS-ALK2, Apollo SciTech, Bogart, USA
    Type: Dataset
    Format: text/tab-separated-values, 3932 data points
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  • 10
    Publication Date: 2024-04-20
    Description: Platynereis spp. were collected via snorkelling or scuba from either inside (40°43′53″N, 13°57′47″E) (stations A1-A3) or outside (40°43'33.33"N, 13°57'36.38"E and 40°44′48″N, 13°56′39″E) (stations C1-C3) the carbon dioxide (CO2) vent on the island of Ischia (Italy) and used in a reciprocal transplant experiment. The effect of exposure to high or low partial pressures of CO2 (pCO2) conditions on the proteome of worms from different pCO2 regimes was investigated to understand the effect of exposure to different pCO2 conditions on the cellular physiological response. This experiment was conducted between 04/09/2013 and 16/09/2013. The experiment was staggered during this time so all worms could be processed. After five days exposure to either low or high CO2 conditions worms were snap frozen in liquid nitrogen and shipped to the University of Hong Kong for proteomic analysis which was finalised on 02/08/2015. Proteomic profiles of worms were characterised using a liquid chromatography-mass spectrometry/mass spectrometry triple time of flight (LC-MS/ MS Triple TOF) approach.
    Keywords: ASSEMBLE_Plus; Association of European Marine Biological Laboratories Expanded; Castello_Aragonese_A1; Castello_Aragonese_A2; Castello_Aragonese_A3; Castello Aragonese; EXP; Experiment; Punta_San_Pietro_C1; Punta_San_Pietro_C2; Punta_San_Pietro_C3; Punta San Pietro
    Type: Dataset
    Format: application/vnd.openxmlformats-officedocument.spreadsheetml.sheet, 127.9 kBytes
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