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  • 1
    Publication Date: 2024-02-16
    Keywords: Alkalinity, total; Ammonium; Aragonite saturation state; Bicarbonate ion; Calcite saturation state; Carbon, inorganic, dissolved; Carbonate ion; Carbon dioxide; Core; Date/time end; Date/time start; Density, mass density; DEPTH, water; EPOCA; European Project on Ocean Acidification; Fugacity of carbon dioxide (water) at sea surface temperature (wet air); Identification; Nitrate; Nitrate and Nitrite; Nitrite; Oxygen; Partial pressure of carbon dioxide (water) at sea surface temperature (wet air); pH; Phosphate; Salinity; Sample volume; Silicon; Temperature, water
    Type: Dataset
    Format: text/tab-separated-values, 4900 data points
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  • 2
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    Unknown
    PANGAEA
    In:  Supplement to: Gazeau, Frédéric; Van Rijswijk, P; Pozzato, L; Middelburg, Jack J (2014): Impacts of Ocean Acidification on Sediment Processes in Shallow Waters of the Arctic Ocean. PLoS ONE, 9(4), e94068, https://doi.org/10.1371/journal.pone.0094068
    Publication Date: 2024-03-15
    Description: Despite the important roles of shallow-water sediments in global biogeochemical cycling, the effects of ocean acidification on sedimentary processes have received relatively little attention. As high-latitude cold waters can absorb more CO2 and usually have a lower buffering capacity than warmer waters, acidification rates in these areas are faster than those in sub-tropical regions. The present study investigates the effects of ocean acidification on sediment composition, processes and sediment-water fluxes in an Arctic coastal system. Undisturbed sediment cores, exempt of large dwelling organisms, were collected, incubated for a period of 14 days, and subject to a gradient of pCO2 covering the range of values projected for the end of the century. On five occasions during the experimental period, the sediment cores were isolated for flux measurements (oxygen, alkalinity, dissolved inorganic carbon, ammonium, nitrate, nitrite, phosphate and silicate). At the end of the experimental period, denitrification rates were measured and sediment samples were taken at several depth intervals for solid-phase analyses. Most of the parameters and processes (i.e. mineralization, denitrification) investigated showed no relationship with the overlying seawater pH, suggesting that ocean acidification will have limited impacts on the microbial activity and associated sediment-water fluxes on Arctic shelves, in the absence of active bio-irrigating organisms. Only following a pH decrease of 1 pH unit, not foreseen in the coming 300 years, significant enhancements of calcium carbonate dissolution and anammox rates were observed. Longer-term experiments on different sediment types are still required to confirm the limited impact of ocean acidification on shallow Arctic sediment processes as observed in this study.
    Keywords: Alkalinity, total; Alkalinity, total, flux; Ammonium; Ammonium, flux; Aragonite saturation state; Arctic; Benthos; beta-Carotene, beta,beta-Carotene per unit sediment mass; Bicarbonate ion; Biomass/Abundance/Elemental composition; Bottles or small containers/Aquaria (〈20 L); Calcite saturation state; Calculated using seacarb; Calculated using seacarb after Nisumaa et al. (2010); Carbon, inorganic, dissolved; Carbon, inorganic, dissolved, flux; Carbon, organic, total; Carbon, total; Carbonate ion; Carbonate system computation flag; Carbon dioxide; Chlorophyll a + pheophorbides per unit sediment mass; Chlorophyll a per unit sediment mass; Chlorophyll b per unit sediment mass; Chlorophyll c per unit sediment mass; Coast and continental shelf; Core; DATE/TIME; Date/time end; Date/time start; Density, mass density; DEPTH, sediment/rock; Depth water equivalent; Deviation; Diadinoxanthin per unit sediment mass; Diatoxanthin per unit sediment mass; Entire community; EPOCA; European Project on Ocean Acidification; Fucoxanthin per unit sediment mass; Fugacity of carbon dioxide (water) at sea surface temperature (wet air); Identification; Laboratory experiment; Median, grain size; Neoxanthin per unit sediment mass; Nitrate; Nitrate, flux; Nitrate and Nitrite; Nitrite; Nitrite, flux; Nitrite and nitrate, flux; Nitrogen, inorganic, dissolved, flux; Nitrogen, total; OA-ICC; Ocean Acidification International Coordination Centre; Oxygen; Oxygen, flux, sediment oxygen demand; Partial pressure of carbon dioxide (water) at sea surface temperature (wet air); Peak area; Percentile 10; Percentile 90; Peridinin per unit sediment mass; pH; Phaeophorbide a per unit sediment mass; Phaeophytin a + allomer and isomer per unit sediment mass; Phaeophytin a per unit sediment mass; Phosphate; Phosphate, flux; Polar; Potentiometric; Potentiometric titration; Salinity; Sample volume; Silicon; Silicon, particulate, flux; Size fraction 〈 0.002 mm, clay; Size fraction 〈 0.004 mm, clay; Size fraction 〈 0.008 mm, clay; Size fraction 〈 0.016 mm; Size fraction 〈 0.032 mm; Size fraction 〈 0.050 mm; Size fraction 〈 0.063 mm, mud, silt+clay; Size fraction 0.250-0.125 mm, 2.0-3.0 phi, fine sand; Size fraction 1.000-0.500 mm, 0.0-1.0 phi, coarse sand; Soft-bottom community; Spectrophotometric; Temperature, water; Violaxanthin per unit sediment mass; Zeaxanthin per unit sediment mass; δ13C, particulate organic carbon; δ13C, total particulate carbon; δ15N, particulate organic nitrogen
    Type: Dataset
    Format: text/tab-separated-values, 11348 data points
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  • 3
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    Unknown
    PANGAEA
    In:  Netherlands Institute of Ecology
    Publication Date: 2024-02-16
    Keywords: Alkalinity, total, flux; Ammonium, flux; Carbon, inorganic, dissolved, flux; Core; Date/time end; Date/time start; DEPTH, sediment/rock; EPOCA; European Project on Ocean Acidification; Identification; Nitrate, flux; Nitrite, flux; Nitrite and nitrate, flux; Nitrogen, inorganic, dissolved, flux; Oxygen, flux, sediment oxygen demand; Partial pressure of carbon dioxide (water) at sea surface temperature (wet air); Phosphate, flux; Silicon, particulate, flux
    Type: Dataset
    Format: text/tab-separated-values, 1500 data points
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  • 4
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    Unknown
    PANGAEA
    In:  Netherlands Institute of Ecology
    Publication Date: 2024-02-16
    Keywords: beta-Carotene, beta,beta-Carotene per unit sediment mass; Carbon, organic, total; Carbon, total; Chlorophyll a + pheophorbides per unit sediment mass; Chlorophyll a per unit sediment mass; Chlorophyll b per unit sediment mass; Chlorophyll c per unit sediment mass; Core; DATE/TIME; DEPTH, sediment/rock; Deviation; Diadinoxanthin per unit sediment mass; Diatoxanthin per unit sediment mass; EPOCA; European Project on Ocean Acidification; Fucoxanthin per unit sediment mass; Median, grain size; Neoxanthin per unit sediment mass; Nitrogen, total; Peak area; Percentile 10; Percentile 90; Peridinin per unit sediment mass; Phaeophorbide a per unit sediment mass; Phaeophytin a + allomer and isomer per unit sediment mass; Phaeophytin a per unit sediment mass; Size fraction 〈 0.002 mm, clay; Size fraction 〈 0.004 mm, clay; Size fraction 〈 0.008 mm, clay; Size fraction 〈 0.016 mm; Size fraction 〈 0.032 mm; Size fraction 〈 0.050 mm; Size fraction 〈 0.063 mm, mud, silt+clay; Size fraction 0.250-0.125 mm, 2.0-3.0 phi, fine sand; Size fraction 1.000-0.500 mm, 0.0-1.0 phi, coarse sand; Violaxanthin per unit sediment mass; Zeaxanthin per unit sediment mass; δ13C, particulate organic carbon; δ13C, total particulate carbon; δ15N, particulate organic nitrogen
    Type: Dataset
    Format: text/tab-separated-values, 3552 data points
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  • 5
    Publication Date: 2018-10-01
    Description: A better understanding of the dynamics of different particulate organic matter (OM) pools in the coastal carbon budget is a key issue for quantifying the role of the coastal ocean in the global carbon cycle. To elucidate the benthic component of this carbon cycle at the land-sea interface, we investigated the carbon isotope signatures (δ13C and ∆14C) in the sediment pore waters dissolved inorganic carbon (DIC) in addition to the sediment OM to constrain the origin of the OM mineralized in sediments. The study site is located at the outlet of the Rhône River (Mediterranean Sea), which was chosen because this river is one of the most nuclearized rivers in Europe and nuclear 14C can serve as a tracer to follow the fate of the OM discharged by the river to the coastal sea. The ∆14C results found in the pore waters DIC show a general offset between buried and mineralized OM following a preferential mineralization model of young and fresh particles. For example, we found that the sediment OM has values with a mean ∆14C=–33‰ at sampling stations near the river mouth whereas enriched ∆14C values around +523‰ and +667‰ respectively were found for the pore waters DIC. This indicates complete mineralization of a riverine fraction of OM enriched in 14C in the river conduit during in-stream photosynthesis. In shelf sediments, the ∆14C of pore waters DIC is slightly enriched (+57‰) with sediment OM reaching –570‰. A mixing model shows that particles mineralized near the river mouth are certainly of riverine phytoplanktonic origin whereas OM mineralized on the shelf is of marine origin. This work highlights the fact that pore waters provide additional information compared to sediments alone and it seems essential to work on both pools to study the carbon budget in river prodelta.
    Print ISSN: 0033-8222
    Electronic ISSN: 1945-5755
    Topics: Archaeology , Energy, Environment Protection, Nuclear Power Engineering , Geosciences
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  • 6
    Publication Date: 2012-09-24
    Description: Burial of organic matter (OM) plays an important role in marine sediments, linking the short-term, biological carbon cycle with the long-term, geological subsurface cycle. It is well established that low-oxygen conditions promote organic carbon burial in marine sediments. However, the mechanism remains enigmatic. Here we report biochemical quality, microbial degradability, OM preservation and accumulation along an oxygen gradient in the Indian Ocean. Our results show that more OM, and of biochemically higher quality, accumulates under low oxygen conditions. Nevertheless, microbial degradability does not correlate with the biochemical quality of OM. This decoupling of OM biochemical quality and microbial degradability, or bioavailability, violates the ruling paradigm that higher quality implies higher microbial processing. The inhibition of bacterial OM remineralisation may play an important role in the burial of organic matter in marine sediments and formation of oil source rocks.
    Print ISSN: 1810-6277
    Electronic ISSN: 1810-6285
    Topics: Biology , Geosciences
    Published by Copernicus on behalf of European Geosciences Union.
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  • 7
    Publication Date: 2013-06-26
    Description: The bacterial loop, the consumption of dissolved organic matter (DOM) by bacteria and subsequent transfer of bacterial carbon to higher trophic levels, plays a prominent role in pelagic aquatic food webs. However, its role in sedimentary ecosystems is not well documented. Here we present the results of isotope tracer experiments performed under in situ oxygen conditions in sediments from inside and outside the Arabian Sea Oxygen Minimum Zone (OMZ) to study the importance of the microbial loop in this setting. Particulate organic matter, added as phytodetritus, was processed by bacteria, protozoa and metazoans, while dissolved organic matter was processed only by bacteria and there was very little, if any, transfer to higher trophic levels within the experimental period. This lack of significant transfer of bacterial-derived carbon to metazoan consumers indicates that the bacterial loop is rather inefficient in these sediments. Moreover, metazoans directly consume labile particulate organic matter resources and thus compete with bacteria for phytodetritus.
    Print ISSN: 1810-6277
    Electronic ISSN: 1810-6285
    Topics: Biology , Geosciences
    Published by Copernicus on behalf of European Geosciences Union.
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  • 8
    Publication Date: 2013-02-20
    Description: Burial of organic matter (OM) plays an important role in marine sediments, linking the short-term, biological carbon cycle with the long-term, geological subsurface cycle. It is well established that low-oxygen conditions promote organic carbon burial in marine sediments. However, the mechanism remains enigmatic. Here we report biochemical quality, microbial degradability, OM preservation and accumulation along an oxygen gradient in the Indian Ocean. Our results show that more OM, with biochemically higher quality, accumulates under low oxygen conditions. Nevertheless, microbial degradability does not correlate with the biochemical quality of OM. This decoupling of OM biochemical quality and microbial degradability, or bioavailability, violates the ruling paradigm that higher quality implies higher microbial processing. The inhibition of bacterial OM remineralisation may play an important role in the burial of organic matter in marine sediments and formation of oil source rocks.
    Print ISSN: 1726-4170
    Electronic ISSN: 1726-4189
    Topics: Biology , Geosciences
    Published by Copernicus on behalf of European Geosciences Union.
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  • 9
    Publication Date: 2013-11-02
    Description: The bacterial loop, the consumption of dissolved organic matter (DOM) by bacteria and subsequent transfer of bacterial carbon to higher trophic levels, plays a prominent role in pelagic food webs. However, its role in sedimentary ecosystems is not well documented. Here we present the results of isotope tracer experiments performed under in situ oxygen conditions in sediments from inside and outside the Arabian Sea's oxygen minimum zone (OMZ) to study the importance of the microbial loop in this setting. Particulate organic matter, added as phytodetritus, was processed by bacteria, protozoa and metazoans, while dissolved organic matter was processed only by bacteria and there was very little, if any, transfer to higher trophic levels within the 7 day experimental period. This lack of significant transfer of bacterial-derived carbon to metazoan consumers indicates that the bacterial loop is rather inefficient, in sediments both inside and outside the OMZ. Moreover, metazoans directly consumed labile particulate organic matter resources and thus competed with bacteria for phytodetritus.
    Print ISSN: 1726-4170
    Electronic ISSN: 1726-4189
    Topics: Biology , Geosciences
    Published by Copernicus on behalf of European Geosciences Union.
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  • 10
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