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  • 1
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    Seawater carbonate chemistry and diatom silica production in the Southern Ocean (2019)
    PANGAEA
    Details
    Publication Date: 2024-03-15
    Description: Diatoms, large bloom-forming marine microorganisms, build frustules out of silicate, which ballasts the cells and aids their export to the deep ocean. This unique physiology forges an important link between the marine silicon and carbon cycles. However, the effect of ocean acidification on the silicification of diatoms is unclear. Here we show that diatom silicification strongly diminishes with increased acidity in a natural Antarctic community. Analyses of single cells from within the community reveal that the effect of reduced pH on silicification differs among taxa, with several species having significantly reduced silica incorporation at CO2 levels equivalent to those projected for 2100. These findings suggest that, before the end of this century, ocean acidification may influence the carbon and silicon cycle by both altering the composition of the diatom assemblages and reducing cell ballasting, which will probably alter vertical flux of these elements to the deep ocean.
    Keywords: Abbreviation; Alkalinity, total; Antarctic; Aragonite saturation state; Bicarbonate ion; Biogenic silica; Calcite saturation state; Calculated using seacarb after Nisumaa et al. (2010); Carbon, inorganic, dissolved; Carbonate ion; Carbonate system computation flag; Carbon dioxide; Cell biovolume; Chlorophyll a; Coast and continental shelf; Containers and aquaria (20-1000 L or 〈 1 m**2); Davis_Station_OA; Entire community; EXP; Experiment; Experiment day; Fragilariopsis curta; Fragilariopsis cylindrus; Fugacity of carbon dioxide (water) at sea surface temperature (wet air); Identification; Laboratory experiment; Maximum photochemical quantum yield of photosystem II; Nitrate and Nitrite; Number of cells; OA-ICC; Ocean Acidification International Coordination Centre; Other metabolic rates; Partial pressure of carbon dioxide (water) at sea surface temperature (wet air); Pelagos; pH; Phosphorus, reactive soluble; Polar; Primary production/Photosynthesis; Proboscia truncata; Proton concentration; Pseudonitzschia turgiduloides; Registration number of species; Replicate; Salinity; Silicate; Silicification; Species; Stellarima microtrias; Temperature, water; Thalassiosira antarctica; Type; Uniform resource locator/link to reference
    Type: Dataset
    Format: text/tab-separated-values, 104844 data points
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  • 2
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    Seawater carbonate chemistry and growth and grazing impact of Antarctic heterotrophic nanoflagellates (2020)
    PANGAEA
    Details
    Publication Date: 2024-03-15
    Description: High-latitude oceans have been identified as particularly vulnerable to ocean acidification if anthropogenic CO2 emissions continue. Marine microbes are an essential part of the marine food web and are a critical link in biogeochemical processes in the ocean, such as the cycling of nutrients and carbon. Despite this, the response of Antarctic marine microbial communities to ocean acidification is poorly understood. We investigated the effect of increasing fCO2 on the growth of heterotrophic nanoflagellates (HNFs), nano- and picophytoplankton, and prokaryotes (heterotrophic Bacteria and Archaea) in a natural coastal Antarctic marine microbial community from Prydz Bay, East Antarctica. At CO2 levels ≥634 µatm, HNF abundance was reduced, coinciding with increased abundance of picophytoplankton and prokaryotes. This increase in picophytoplankton and prokaryote abundance was likely due to a reduction in top-down control of grazing HNFs. Nanophytoplankton abundance was elevated in the 634 µatm treatment, suggesting that moderate increases in CO2 may stimulate growth. The taxonomic and morphological differences in CO2 tolerance we observed are likely to favour dominance of microbial communities by prokaryotes, nanophytoplankton, and picophytoplankton. Such changes in predator–prey interactions with ocean acidification could have a significant effect on the food web and biogeochemistry in the Southern Ocean, intensifying organic-matter recycling in surface waters; reducing vertical carbon flux; and reducing the quality, quantity, and availability of food for higher trophic levels.
    Keywords: Alkalinity, total; Ammonium; Antarctic; Aragonite saturation state; Bicarbonate ion; Calcite saturation state; Calculated using seacarb after Nisumaa et al. (2010); Carbon, inorganic, dissolved; Carbonate ion; Carbonate system computation flag; Carbon dioxide; Cell density; Cell density, standard error; Chlorophyll a; Community composition and diversity; Containers and aquaria (20-1000 L or 〈 1 m**2); Date; Duration, number of days; Entire community; EXP; Experiment; Fugacity of carbon dioxide (water) at sea surface temperature (wet air); Identification; Irradiance; Laboratory experiment; Light attenuation, vertical; Nanoflagellates, heterotrophic; Nanophytoplankton; Nitrogen oxide; OA-ICC; Ocean Acidification International Coordination Centre; Partial pressure of carbon dioxide (water) at sea surface temperature (wet air); Pelagos; pH; Phosphate; Picophytoplankton; Polar; Position; Prokaryotes; Prydz_Bay_OA; Replicate; Salinity; Silicate; Species; Temperature, water; Treatment; Type
    Type: Dataset
    Format: text/tab-separated-values, 53927 data points
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    DATA PANGAEA
  • 3
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    Seawater carbonate chemistry and macromolecular data of diatoms (2022)
    PANGAEA
    Details
    Publication Date: 2024-03-15
    Description: Primary production in the Southern Ocean is dominated by diatom-rich phytoplankton assemblages, whose individual physiological characteristics and community composition are strongly shaped by the environment, yet knowledge on how diatoms allocate cellular energy in response to ocean acidification (OA) is limited. Understanding such changes in allocation is integral to determining the nutritional quality of diatoms and the subsequent impacts on the trophic transfer of energy and nutrients. Using synchrotron-based Fourier transform infrared microspectroscopy, we analysed the macromolecular content of selected individual diatom taxa from a natural Antarctic phytoplankton community exposed to a gradient of fCO2 levels (288–1263 µatm). Strong species-specific differences in macromolecular partitioning were observed under OA. Large taxa showed preferential energy allocation towards proteins, while smaller taxa increased both lipid and protein stores at high fCO2. If these changes are representative of future Antarctic diatom physiology, we may expect a shift away from lipid-rich large diatoms towards a community dominated by smaller taxa, but with higher lipid and protein stores than their present-day contemporaries, a response that could have cascading effects on food web dynamics in the Antarctic marine ecosystem.
    Keywords: Alkalinity, total; Antarctic; Aragonite saturation state; Bicarbonate ion; Calcite saturation state; Calculated using seacarb after Nisumaa et al. (2010); Carbon, inorganic, dissolved; Carbonate ion; Carbonate system computation flag; Carbon dioxide; Cell biovolume; Coast and continental shelf; Community composition and diversity; Compounds; Containers and aquaria (20-1000 L or 〈 1 m**2); Davis_Station_Antarctica; Entire community; EXP; Experiment; Fugacity of carbon dioxide (water) at sea surface temperature (wet air); Growth/Morphology; Identification; Laboratory experiment; OA-ICC; Ocean Acidification International Coordination Centre; Other studied parameter or process; Partial pressure of carbon dioxide (water) at sea surface temperature (wet air); Peak area; Pelagos; pH; Phosphorus, reactive soluble; Polar; Salinity; Sample code/label; Silicate; Species; Temperature, water; Type
    Type: Dataset
    Format: text/tab-separated-values, 98002 data points
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    DATA PANGAEA
  • 4
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    Overcoming the Obstacles Faced by Early Career Researchers in Marine Science: Lessons From the Marine Ecosystem Assessment for the Southern Ocean (2020)
    Frontiers Media
    Details
    Publication Date: 2020-08-28
    Electronic ISSN: 2296-7745
    Topics: Biology
    Published by Frontiers Media
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  • 5
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    Unexpected host dependency of Antarctic Nanohaloarchaeota (2019)
    National Academy of Sciences
    Details
    Publication Date: 2019-06-28
    Description: In hypersaline environments, Nanohaloarchaeota (Diapherotrites, Parvarchaeota, Aenigmarchaeota, Nanoarchaeota, Nanohaloarchaeota [DPANN] superphylum) are thought to be free-living microorganisms. We report cultivation of 2 strains of Antarctic Nanohaloarchaeota and show that they require the haloarchaeon Halorubrum lacusprofundi for growth. By performing growth using enrichments and fluorescence-activated cell sorting, we demonstrated successful cultivation of Candidatus Nanohaloarchaeum antarcticus, purification of Ca. Nha. antarcticus away from other species, and growth and verification of Ca. Nha. antarcticus with Hrr. lacusprofundi; these findings are analogous to those required for fulfilling Koch’s postulates. We use fluorescent in situ hybridization and transmission electron microscopy to assess cell structures and interactions; metagenomics to characterize enrichment taxa, generate metagenome assembled genomes, and interrogate Antarctic communities; and proteomics to assess metabolic pathways and speculate about the roles of certain proteins. Metagenome analysis indicates the presence of a single species, which is endemic to Antarctic hypersaline systems that support the growth of haloarchaea. The presence of unusually large proteins predicted to function in attachment and invasion of hosts plus the absence of key biosynthetic pathways (e.g., lipids) in metagenome assembled genomes of globally distributed Nanohaloarchaeota indicate that all members of the lineage have evolved as symbionts. Our work expands the range of archaeal symbiotic lifestyles and provides a genetically tractable model system for advancing understanding of the factors controlling microbial symbiotic relationships.
    Print ISSN: 0027-8424
    Electronic ISSN: 1091-6490
    Topics: Biology , Medicine , Natural Sciences in General
    Published by National Academy of Sciences
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  • 6
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    Ocean acidification reduces growth and grazing impact of Antarctic heterotrophic nanoflagellates (2020)
    Copernicus
    Details
    Publication Date: 2020-08-18
    Description: High-latitude oceans have been identified as particularly vulnerable to ocean acidification if anthropogenic CO2 emissions continue. Marine microbes are an essential part of the marine food web and are a critical link in biogeochemical processes in the ocean, such as the cycling of nutrients and carbon. Despite this, the response of Antarctic marine microbial communities to ocean acidification is poorly understood. We investigated the effect of increasing fCO2 on the growth of heterotrophic nanoflagellates (HNFs), nano- and picophytoplankton, and prokaryotes (heterotrophic Bacteria and Archaea) in a natural coastal Antarctic marine microbial community from Prydz Bay, East Antarctica. At CO2 levels ≥634 µatm, HNF abundance was reduced, coinciding with increased abundance of picophytoplankton and prokaryotes. This increase in picophytoplankton and prokaryote abundance was likely due to a reduction in top-down control of grazing HNFs. Nanophytoplankton abundance was elevated in the 634 µatm treatment, suggesting that moderate increases in CO2 may stimulate growth. The taxonomic and morphological differences in CO2 tolerance we observed are likely to favour dominance of microbial communities by prokaryotes, nanophytoplankton, and picophytoplankton. Such changes in predator–prey interactions with ocean acidification could have a significant effect on the food web and biogeochemistry in the Southern Ocean, intensifying organic-matter recycling in surface waters; reducing vertical carbon flux; and reducing the quality, quantity, and availability of food for higher trophic levels.
    Print ISSN: 1726-4170
    Electronic ISSN: 1726-4189
    Topics: Biology , Geosciences
    Published by Copernicus on behalf of European Geosciences Union.
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  • 7
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    Ocean acidification changes the structure of an Antarctic coastal protistan community (2018)
    Copernicus
    Details
    Publication Date: 2018-04-20
    Description: Antarctic near-shore waters are amongst the most sensitive in the world to ocean acidification. Microbes occupying these waters are critical drivers of ecosystem productivity, elemental cycling and ocean biogeochemistry, yet little is known about their sensitivity to ocean acidification. A six-level, dose–response experiment was conducted using 650 L incubation tanks (minicosms) adjusted to a gradient in fugacity of carbon dioxide (fCO2) from 343 to 1641 µatm. The six minicosms were filled with near-shore water from Prydz Bay, East Antarctica, and the protistan composition and abundance was determined by microscopy during 18 days of incubation. No CO2-related change in the protistan community composition was observed during the initial 8 day acclimation period under low light. Thereafter, the response of both autotrophic and heterotrophic protists to fCO2 was species-specific. The response of diatoms was mainly cell size related; microplanktonic diatoms (〉 20 µm) increased in abundance with low to moderate fCO2 (343–634 µatm) but decreased at fCO2 ≥ 953 µatm. Similarly, the abundance of Phaeocystis antarctica increased with increasing fCO2 peaking at 634 µatm. Above this threshold the abundance of micro-sized diatoms and P. antarctica fell dramatically, and nanoplanktonic diatoms (≤ 20 µm) dominated, therefore culminating in a significant change in the protistan community composition. Comparisons of these results with previous experiments conducted at this site show that the fCO2 thresholds are similar, despite seasonal and interannual differences in the physical and biotic environment. This suggests that near-shore microbial communities are likely to change significantly near the end of this century if anthropogenic CO2 release continues unabated, with profound ramifications for near-shore Antarctic ecosystem food webs and biogeochemical cycling.
    Print ISSN: 1726-4170
    Electronic ISSN: 1726-4189
    Topics: Biology , Geosciences
    Published by Copernicus on behalf of European Geosciences Union.
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  • 8
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    Ocean acidification changes the structure of an Antarctic coastal protistan community (2017)
    Copernicus
    Details
    Publication Date: 2017-06-07
    Description: Antarctic near-shore waters are amongst of the most vulnerable in the world to ocean acidification. Microbes occupying these waters are critical drivers of ecosystem productivity, elemental cycling and ocean biogeochemistry, yet little is known about their sensitivity to ocean acidification. An unreplicated, six-level dose-response experiment was conducted using 650 L incubation tanks (minicosms) adjusted to fugacity of carbon dioxide (ƒCO2) from 343 to 11 641 μatm. The minicosms were filled with near-shore water from Prydz Bay, East Antarctica and the protistan composition and abundance was determined by microscopy analysis of samples collected during the 18 day incubation. No CO2-related change in the protistan community composition was observed during the initial 8 day acclimation period under low light. Thereafter, the response of protists to ƒCO2 were species-specific for both heterotrophic and autotrophic protists. The response by diatoms was related to cell size, large cells increasing in abundance with low to moderate ƒCO2 (634–953 μatm). Similarly, the abundance of Phaeocystis antarctica increased with increasing ƒCO2 peaking at a ƒCO2 of 634 μatm. Above this threshold the abundances of large diatoms and Phaeocystis antarctica fell dramatically, and small diatoms dominated, therefore culminating in a significant shift in the composition of the protistan community. The threshold CO2 level at which the composition changed agreed with that previously measured at this location, indicating it remains consistent among seasons. This suggests that near-shore microbial communities are likely to change significantly near the end of this century if anthropogenic CO2 release continues unabated, with profound ramifications for near-shore Antarctic ecosystems.
    Print ISSN: 1810-6277
    Electronic ISSN: 1810-6285
    Topics: Biology , Geosciences
    Published by Copernicus on behalf of European Geosciences Union.
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  • 9
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    Acidification diminishes diatom silica production in the Southern Ocean (2019)
    Springer Nature
    Details
    Publication Date: 2019-08-26
    Print ISSN: 1758-678X
    Electronic ISSN: 1758-6798
    Topics: Geosciences
    Published by Springer Nature
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  • 10
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    Ocean acidification reduces growth and grazing of Antarctic heterotrophic nanoflagellates (2019)
    Copernicus
    Details
    Publication Date: 2019-06-26
    Description: High-latitude oceans have been identified as particularly vulnerable to ocean acidification if anthropogenic CO2 emissions continue. Marine microbes are an essential part of the marine food web and are a critical link in biogeochemical processes in the ocean, such as the cycling of nutrients and carbon. Despite this, the response of Antarctic marine microbial communities to ocean acidification is poorly understood. We investigated the effect of increasing fCO2 on the growth of heterotrophic nanoflagellates (HNF), nano- and picophytoplankton, and prokaryotes in a natural coastal Antarctic marine microbial community from Prydz Bay, East Antarctica. At CO2 levels ≥ 634 μatm, HNF abundance was reduced, coinciding with significantly increased abundance of picophytoplankton and prokaryotes. This increase in picophytoplankton and prokaryote abundance was likely due to a reduction in top-down control of grazing HNF. Nanophytoplankton abundance was significantly elevated in the 634 and 953 μatm treatments, suggesting that moderate increases in CO2 may stimulate growth. Changes in predator-prey interactions with ocean acidification could have a significant effect on the food web and biogeochemistry in the Southern Ocean. Based on these results, it is likely that the phytoplankton community composition in these waters will shift to communities dominated by prokaryotes, nano- and picophytoplankton. This may intensify organic matter recycling in surface waters, leading to a decline in carbon flux, as well as a reducing the quality and quantity of food available to higher trophic organisms.
    Print ISSN: 1810-6277
    Electronic ISSN: 1810-6285
    Topics: Biology , Geosciences
    Published by Copernicus on behalf of European Geosciences Union.
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