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  • 1
    Publication Date: 2019-11-25
    Description: The progress of science is tied to the standardization of measurements, instruments, and data. This is especially true in the Big Data age, where analyzing large data volumes critically hinges on the data being standardized. Accordingly, the lack of community‐sanctioned data standards in paleoclimatology has largely precluded the benefits of Big Data advances in the field. Building upon recent efforts to standardize the format and terminology of paleoclimate data, this article describes the Paleoclimate Community reporTing Standard (PaCTS), a crowdsourced reporting standard for such data. PaCTS captures which information should be included when reporting paleoclimate data, with the goal of maximizing the reuse value of paleoclimate data sets, particularly for synthesis work and comparison to climate model simulations. Initiated by the LinkedEarth project, the process to elicit a reporting standard involved an international workshop in 2016, various forms of digital community engagement over the next few years, and grassroots working groups. Participants in this process identified important properties across paleoclimate archives, in addition to the reporting of uncertainties and chronologies; they also identified archive‐specific properties and distinguished reporting standards for new versus legacy data sets. This work shows that at least 135 respondents overwhelmingly support a drastic increase in the amount of metadata accompanying paleoclimate data sets. Since such goals are at odds with present practices, we discuss a transparent path toward implementing or revising these recommendations in the near future, using both bottom‐up and top‐down approaches.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , isiRev
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  • 2
    Publication Date: 2021-12-23
    Description: The boron isotopic ratio of 11B/10B (δ11BSRM951) and trace element composition of marine carbonates are key proxies for understanding carbon cycling (pH) and palaeoceanographic change. However, method validation and comparability of results between laboratories requires carbonate reference materials. Here, we report results of an inter‐laboratory comparison study to both assign δ11BSRM951 and trace element compositions to new synthetic marine carbonate reference materials (RMs), NIST RM 8301 (Coral) and NIST RM 8301 (Foram) and to assess the variance of data among laboratories. Non‐certified reference values and expanded 95% uncertainties for δ11BSRM951 in NIST RM 8301 (Coral) (+24.17‰ ± 0.18‰) and NIST RM 8301 (Foram) (+14.51‰ ± 0.17‰) solutions were assigned by consensus approach using inter‐laboratory data. Differences reported among laboratories were considerably smaller than some previous inter‐laboratory comparisons, yet discrepancies could still lead to large differences in calculated seawater pH. Similarly, variability in reported trace element information among laboratories (e.g., Mg/Ca ± 5% RSD) was often greater than within a single laboratory (e.g., Mg/Ca 〈 2%). Such differences potentially alter proxy‐reconstructed seawater temperature by more than 2 °C. These now well‐characterised solutions are useful reference materials to help the palaeoceanographic community build a comprehensive view of past ocean changes.
    Type: info:eu-repo/semantics/article
    Format: application/pdf
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  • 3
    Publication Date: 2023-05-30
    Description: The ratio of sodium to calcium (Na/Ca) in foraminiferal calcite has been proposed as a proxy for salinity, yet relatively little is known about the incorporation of sodium into the shells of foraminifera. Ongoing debates include the location of Na in the calcite crystal lattice, the possibility that at least some Na might be complexed with organics, and the influence of spines/spine bases. We present new Na/Ca measurements, determined using both solution and laser ablation ICP-MS, of the planktonic foraminifera Globigerinoides ruber (white) from plankton tows and sediment traps spanning a wide salinity range (32.5–40.7 salinity units), laboratory cultures under varying carbonate chemistry, and globally-distributed core-top samples. Our results show that Na/Ca in recently living foraminifera measured by laser ablation ICP-MS is elevated by up to 5 mmol/mol (∼85%) relative to the same samples measured by solution ICP-MS (the same comparison for Mg/Ca shows excellent agreement between the techniques). Na/Ca in recently living foraminifera measured by laser ablation ICP-MS displays a significant relationship with salinity above ∼36 salinity units with a slope of ∼0.7 mmol/mol/salinity unit; however, only a weak relationship is observed between salinity and Na/Ca measured by solution ICP-MS. We propose that Na is incorporated in at least two discrete phases; a primary phase within the CaCO3 mineral, and a (or likely multiple) secondary phase(s). Possibilities for these secondary phases include residual metastable CaCO3, fluid inclusions, high Na/Ca spine bases, and organics. These secondary phases contribute to spatially-resolved analyses (i.e. laser ablation ICP-MS) of recently living foraminifera but are removed by crushing/oxidative cleaning for solution ICP-MS, and during early diagenesis, as evidenced by the agreement between laser analysis of coretop samples and Na/Ca measured by solution. The amount of one of these secondary phases, or the amount of Na within this phase, appears to vary as a function of salinity, and is likely the principal driver of the previously observed steep Na/Ca-salinity relationship in recently living foraminifera analysed by laser ablation. Overall, we find salinity, temperature, carbonate chemistry, and bottom water saturation state (Ωcalcite) all have a significant but relatively weak effect on Na/Ca in the primary calcite phase. As such, Na/Ca in planktonic foraminifera recovered from sediment cores is unlikely to find widespread utility as a salinity proxy.
    Type: info:eu-repo/semantics/article
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  • 4
    Publication Date: 2023-08-07
    Description: Seawater chemistry exerts an important control on the incorporation of trace elements into the shells of marine calcifying organisms. Variability in the major ion chemistry of seawater is a tracer of past geological processes, and the influence of seawater chemistry on trace element incorporation in calcium carbonate can be harnessed to determine changes in the composition of seawater through time. Here, we investigate whether key oceanographic parameters (temperature, salinity, and the carbonate system) affect the incorporation of potassium (K) into foraminiferal calcite, and explore the utility of K/Ca ratios in foraminifera as an indicator of past variability in the seawater Ca2+ concentration. We analysed both low-Mg and high-Mg modern foraminifera, including planktonic (Globigerinoides ruber) and shallow-dwelling larger benthic (Operculina ammonoides) species, using laser-ablation sector-field inductively-coupled plasma mass spectrometry (LA-SF-ICPMS). Both species show no resolvable influence of temperature, salinity, pH, or [CO32−] on K incorporation across the range that these vary at our samples sites. In order to determine the effect of the seawater Ca concentration ([Ca2+]sw) on K incorporation, we analysed laboratory-cultured O. ammonoides, the close living relative of the abundant Eocene Nummulites, grown at four different [Ca2+]sw. We find a significant relationship between seawater and shell K/Ca, albeit with a shallower slope compared to most other trace elements which we suggest is driven by a crystal growth rate effect on K incorporation, constrained using culture experiments of O. ammonoides grown at different pH. If the K+ concentration has remained relatively constant throughout the Phanerozoic Eon, our data may pave the way forward for the use of K/Ca as a direct proxy for past [Ca2+]sw variability. Alternatively, coupling K/Ca with the similar Na/Ca proxy would allow more accurate reconstruction of [Ca2+]sw or verification of whether [K+]sw and [Na+]sw have indeed remained within narrow bounds.
    Type: info:eu-repo/semantics/article
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  • 5
    Publication Date: 2023-02-01
    Description: Paleotemperature proxy data form the cornerstone of paleoclimate research and are integral to understanding the evolution of the Earth system across the Phanerozoic Eon. Here, we present PhanSST, a database containing over 150,000 data points from five proxy systems that can be used to estimate past sea surface temperature. The geochemical data have a near-global spatial distribution and temporally span most of the Phanerozoic. Each proxy value is associated with consistent and queryable metadata fields, including information about the location, age, and taxonomy of the organism from which the data derive. To promote transparency and reproducibility, we include all available published data, regardless of interpreted preservation state or vital effects. However, we also provide expert-assigned diagenetic assessments, ecological and environmental flags, and other proxy-specific fields, which facilitate informed and responsible reuse of the database. The data are quality control checked and the foraminiferal taxonomy has been updated. PhanSST will serve as a valuable resource to the paleoclimate community and has myriad applications, including evolutionary geochemical, diagenetic, and proxy calibration studies.
    Language: English
    Type: info:eu-repo/semantics/article
    Format: application/pdf
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  • 6
    Electronic Resource
    Electronic Resource
    Oxford UK : Blackwell Science Ltd.
    Journal of fish diseases 25 (2002), S. 0 
    ISSN: 1365-2761
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Biology , Medicine
    Notes: A newly recognized herpesvirus, koi herpesvirus or KHV, causes a lethal disease in common carp, Cyprinus carpio, and its colourful strain known as koi or fancy carp. In this study, we report new outbreaks of the disease, present initial characterization of the KHV genome, and describe assays for detection of KHV DNA in infected cells and tissues of infected fish. Restriction endonuclease (RE) profiles of viral DNA derived from two epidemiologically distinct KHV isolates were identical to each other. Cloned KHV BamHI and SphI DNA probes specifically hybridized to KHV DNA, but not to DNAs derived from a variety of other fish herpesviruses. The KHV DNA probes detected KHV DNA in tissues of experimentally infected koi fish by DNA hybridization. The KHV specific polymerase chain assays (PCR) were developed for rapid detection and confirmation of KHV DNA in tissues of infected fish.
    Type of Medium: Electronic Resource
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  • 7
    Electronic Resource
    Electronic Resource
    Oxford, UK : Blackwell Publishing Ltd
    Journal of the American Water Resources Association 14 (1978), S. 0 
    ISSN: 1752-1688
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Architecture, Civil Engineering, Surveying , Geography
    Notes: : An investigation of treated municipal wastewaters discharged into Texas streams was conducted to determine the probable effect of concentrations of ammonia in receiving waters, based on existing data on ammonia levels which are lethal to various species of fish. Recorded data for most Texas cities were analyzed. Based on existing toxicity criteria for ammonia of 1/10 TLm= 0.31 mg/1 NH3-N, employing known discharge flow rates, and 7-day, 5-year or 7-day, 10-year low flows in Texas streams, appreciable numbers of sites were found to pose a threat to various species of fish. Using the bluegill (Lepomis macrochirus) as a median tolerance limit species, data from 65 cities which met the aforecited requirements, were analyzed. Those included a total of 92 wastewater effluents. Sixty-nine percent of those cities and 70% of their effluents exceeded the 0.31 mg/1 NH3-N limit in the stream below the discharge point. Thirty-seven percent of the cities equaled or exceeded the 96-hour TLm concentration limit of 3.1 mg/1 ammonia. Based on the 10 mg/1 NO3-N standard for intake water for potable supplies, 32% of the effluents resulted in a stream concentration which exceeded 10 mg/1, assuming a straight conversion of NH3-N to NO3-N.
    Type of Medium: Electronic Resource
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  • 8
    Electronic Resource
    Electronic Resource
    Oxford, UK : Blackwell Publishing Ltd
    Journal of the American Water Resources Association 15 (1979), S. 0 
    ISSN: 1752-1688
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Architecture, Civil Engineering, Surveying , Geography
    Type of Medium: Electronic Resource
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  • 9
    Electronic Resource
    Electronic Resource
    Palo Alto, Calif. : Annual Reviews
    Annual Review of Biochemistry 57 (1988), S. 665-700 
    ISSN: 0066-4154
    Source: Annual Reviews Electronic Back Volume Collection 1932-2001ff
    Topics: Chemistry and Pharmacology , Biology
    Type of Medium: Electronic Resource
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  • 10
    Electronic Resource
    Electronic Resource
    Oxford, UK : Blackwell Science Ltd
    Journal of fish diseases 26 (2003), S. 0 
    ISSN: 1365-2761
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Biology , Medicine
    Notes: Channel catfish virus (CCV) produces an acute haemorrhagic disease in fingerling channel catfish and establishes latent infection in fish that survive the primary infection. This study investigated CCV gene expression in tissues of experimentally infected fish. Reverse transcriptase polymerase chain reaction assays were developed for detection of transcripts expressed by each of the CCV direct repeat region genes in CCV-infected channel catfish ovary cells and in tissues of infected fish. Immediate-early, early and late gene transcripts were detected in the blood, brain, kidney and liver tissues of acutely infected catfish demonstrating active viral replication in multiple tissues during the early stages of CCV infection. However, there was no evidence for viral replication by 24 days post-infection in tissues of fish that survived the acute disease. Viral latency-associated transcripts encoded by CCV direct repeat genes were not detected in latently infected catfish. The results of this study provide a foundation for further studies to investigate the molecular basis of CCV pathogenesis and latency.
    Type of Medium: Electronic Resource
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