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  • 1
    Publication Date: 2015-07-02
    Description: Multicellularity is often considered a prerequisite for morphological complexity, as seen in the camera-type eyes found in several groups of animals. A notable exception exists in single-celled eukaryotes called dinoflagellates, some of which have an eye-like 'ocelloid' consisting of subcellular analogues to a cornea, lens, iris, and retina. These planktonic cells are uncultivated and rarely encountered in environmental samples, obscuring the function and evolutionary origin of the ocelloid. Here we show, using a combination of electron microscopy, tomography, isolated-organelle genomics, and single-cell genomics, that ocelloids are built from pre-existing organelles, including a cornea-like layer made of mitochondria and a retinal body made of anastomosing plastids. We find that the retinal body forms the central core of a network of peridinin-type plastids, which in dinoflagellates and their relatives originated through an ancient endosymbiosis with a red alga. As such, the ocelloid is a chimaeric structure, incorporating organelles with different endosymbiotic histories. The anatomical complexity of single-celled organisms may be limited by the components available for differentiation, but the ocelloid shows that pre-existing organelles can be assembled into a structure so complex that it was initially mistaken for a multicellular eye. Although mitochondria and plastids are acknowledged chiefly for their metabolic roles, they can also be building blocks for greater structural complexity.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Gavelis, Gregory S -- Hayakawa, Shiho -- White, Richard A 3rd -- Gojobori, Takashi -- Suttle, Curtis A -- Keeling, Patrick J -- Leander, Brian S -- England -- Nature. 2015 Jul 9;523(7559):204-7. doi: 10.1038/nature14593. Epub 2015 Jul 1.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Zoology, University of British Columbia, Vancouver, British Columbia V6T 1Z4, Canada. ; 1] Department of Zoology, University of British Columbia, Vancouver, British Columbia V6T 1Z4, Canada [2] Department of Botany, University of British Columbia, Vancouver, British Columbia V6T 1Z4, Canada [3] Center for Information Biology, National Institute of Genetics, Mishima, Shizuoka 411-8540, Japan. ; Department of Microbiology and Immunology, University of British Columbia, Vancouver, British Columbia V6T 1Z4, Canada. ; 1] Center for Information Biology, National Institute of Genetics, Mishima, Shizuoka 411-8540, Japan [2] Computational Bioscience Research Center, King Abdullah University of Science and Technology, Thuwal 23955-6900, Saudi Arabia. ; 1] Department of Botany, University of British Columbia, Vancouver, British Columbia V6T 1Z4, Canada [2] Department of Microbiology and Immunology, University of British Columbia, Vancouver, British Columbia V6T 1Z4, Canada [3] Department of Earth, Ocean and Atmospheric Sciences, University of British Columbia, Vancouver, British Columbia V6T 1Z4, Canada [4] Canadian Institute for Advanced Research, Toronto, Ontario M5G 1Z8, Canada. ; 1] Department of Botany, University of British Columbia, Vancouver, British Columbia V6T 1Z4, Canada [2] Canadian Institute for Advanced Research, Toronto, Ontario M5G 1Z8, Canada. ; 1] Department of Zoology, University of British Columbia, Vancouver, British Columbia V6T 1Z4, Canada [2] Department of Botany, University of British Columbia, Vancouver, British Columbia V6T 1Z4, Canada [3] Canadian Institute for Advanced Research, Toronto, Ontario M5G 1Z8, Canada.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26131935" target="_blank"〉PubMed〈/a〉
    Keywords: Dinoflagellida/*genetics/physiology/*ultrastructure ; Genome, Protozoan/genetics ; Microscopy, Electron, Scanning ; Microscopy, Electron, Transmission ; Mitochondria/metabolism/ultrastructure ; Molecular Sequence Data ; Plastids/metabolism/ultrastructure ; Protozoan Proteins/genetics ; Rhodophyta/genetics ; *Symbiosis
    Print ISSN: 0028-0836
    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 2
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    American Association for the Advancement of Science (AAAS)
    Publication Date: 2011-03-10
    Description: DNA transposons are mobile genetic elements that have shaped the genomes of eukaryotes for millions of years, yet their origins remain obscure. We discovered a virophage that, on the basis of genetic homology, likely represents an evolutionary link between double-stranded DNA viruses and Maverick/Polinton eukaryotic DNA transposons. The Mavirus virophage parasitizes the giant Cafeteria roenbergensis virus and encodes 20 predicted proteins, including a retroviral integrase and a protein-primed DNA polymerase B. On the basis of our data, we conclude that Maverick/Polinton transposons may have originated from ancient relatives of Mavirus, and thereby influenced the evolution of eukaryotic genomes, although we cannot rule out alternative evolutionary scenarios.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Fischer, Matthias G -- Suttle, Curtis A -- New York, N.Y. -- Science. 2011 Apr 8;332(6026):231-4. doi: 10.1126/science.1199412. Epub 2011 Mar 3.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Microbiology and Immunology, 1365-2350 Health Sciences Mall, University of British Columbia, Vancouver V6T 1Z3, Canada.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/21385722" target="_blank"〉PubMed〈/a〉
    Keywords: Amino Acid Sequence ; *DNA Transposable Elements ; DNA Viruses/*genetics/*physiology ; DNA, Viral/genetics ; DNA-Directed DNA Polymerase/genetics ; *Evolution, Molecular ; Genome, Viral ; Integrases/chemistry/genetics ; Molecular Sequence Data ; Phylogeny ; Satellite Viruses/*genetics/*physiology ; Stramenopiles/virology ; Viral Proteins/chemistry/genetics ; Virus Replication
    Print ISSN: 0036-8075
    Electronic ISSN: 1095-9203
    Topics: Biology , Chemistry and Pharmacology , Computer Science , Medicine , Natural Sciences in General , Physics
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  • 3
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    American Association for the Advancement of Science (AAAS)
    Publication Date: 2006-06-24
    Description: RNA viruses infect marine organisms from bacteria to whales, but RNA virus communities in the sea remain essentially unknown. Reverse-transcribed whole-genome shotgun sequencing was used to characterize the diversity of uncultivated marine RNA virus assemblages. A diverse assemblage of RNA viruses, including a broad group of marine picorna-like viruses, and distant relatives of viruses infecting arthropods and higher plants were found. Communities were dominated by distinct genotypes with small genome sizes, and we completely assembled the genomes of several hitherto undiscovered viruses. Our results show that the oceans are a reservoir of previously unknown RNA viruses.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Culley, Alexander I -- Lang, Andrew S -- Suttle, Curtis A -- New York, N.Y. -- Science. 2006 Jun 23;312(5781):1795-8.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Botany, University of British Columbia, 3529-6270 University Boulevard, Vancouver, BC V6T 1Z4, Canada.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/16794078" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Arthropods/virology ; Contig Mapping ; DNA, Complementary ; *Ecosystem ; *Genetic Variation ; *Genome, Viral ; Genomic Library ; *Genomics ; Genotype ; Molecular Sequence Data ; Pacific Ocean ; Phylogeny ; Picornaviridae/classification/genetics ; Plants/virology ; RNA Viruses/*genetics ; RNA, Viral/classification/*genetics/isolation & purification ; Reverse Transcriptase Polymerase Chain Reaction ; Seawater/*virology ; Sequence Analysis, DNA ; Synteny ; Tombusviridae/classification/genetics
    Print ISSN: 0036-8075
    Electronic ISSN: 1095-9203
    Topics: Biology , Chemistry and Pharmacology , Computer Science , Medicine , Natural Sciences in General , Physics
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  • 4
    Publication Date: 2015-08-19
    Description: Polar freshwater cyanophage S-EIV1 represents a new widespread evolutionary lineage of phages The ISME Journal 9, 2046 (September 2015). doi:10.1038/ismej.2015.24 Authors: C Chénard, A M Chan, W F Vincent & C A Suttle
    Print ISSN: 1751-7362
    Electronic ISSN: 1751-7370
    Topics: Biology
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  • 5
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    PANGAEA
    In:  Supplement to: Mo, T; Suttle, C A; Sackett, William M (1973): Uranium concentrations in marine sediments. Geochimica et Cosmochimica Acta, 37(1), 35-51, https://doi.org/10.1016/0016-7037(73)90242-1
    Publication Date: 2023-08-28
    Description: Uranium concentrations in a large number of marine sediment samples of different types with world-wide spatial distribution have been determined using the rapid, precise and nondestructive technique of counting the delayed neutrons emitted during U235 fission induced with thermal neutrons. Several interesting relationships were apparent. 1) A direct proportionality was observed between percentage of organic carbon and uranium in sediments deposited in an anoxic environment in the Pettaquamscutt River in Rhode Island with concentrations ranging from 7 per cent organic carbon and 7 ppm uranium to 14 per cent organic carbon and 30 ppm uranium. A similar relationship was found in cores of sediments deposited on the Sigsbee Knolls in the Gulf of Mexico. 2) For manganese nodules a direct relationship can be seen between uranium and calcium concentrations and both decrease with increasing depth of deposition. For nodules from 4500 m in the Pacific, concentrations are 3 ppm uranium and 0.3 per cent calcium compared with 14 ppm uranium and 1.5 per cent calcium at 1000 m. 3) Relatively high uranium concentrations were observed in carbonates deposited in the deepest parts of the Gulf of Mexico, with the >88 ? carbonate fraction in Sigsbee Knoll cores having as much as 1.20 ppm. A model to explain the observed variations must include uranium enrichment in near shore environments via an anoxic pathway, followed by redeposition in a deep ocean environment with dilution either by low-uranium-bearing foraminiferal or silicious oozes or, along the continental margins, dilution with high-uranium-bearing carbonate sands.
    Keywords: 2P-50; 2P-52; A-266/D-40; Argo; AT26601; AT266-40; Atlantic Ocean; Atlantis (1931); Blake Plateau, Atlantic Ocean; Canada; CH03601; CH36-6RD; Chain; Deposit type; DEPTH, sediment/rock; DNWB0ABD; DODO; DODO-008D; DODO-127D; DOWNWIND-B1; DOWNWIND-H; Dredge; Dredge, chain bag; Dredge, rock; DRG; DRG_C; DRG_R; DWBD1; DWBD4; DWHD47; Element analysis, neutron activation (NAA); Elevation of event; Event label; FANB01BD; FANBD-20D; FANFARE-B; GOS74; GOS74-2340; GOS74-2374; Gosnold; Grab; GRAB; Horizon; Identification; Indian Ocean; Lake_Charlotte-S; Latitude of event; Longitude of event; MDPC02HO-MP-025F-2; MDPC02HO-MP-026A-3; MIDPAC; MPC-25F-2; MPC-26A-3; NOAA and MMS Marine Minerals Geochemical Database; NOAA-MMS; Pacific Ocean; Prospector; Prospector-63; Sample code/label; Spencer F. Baird; Uranium; V18; V18-32RD; Vema
    Type: Dataset
    Format: text/tab-separated-values, 64 data points
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  • 6
    Publication Date: 2024-05-23
    Description: Pacific oysters (Magallana gigas, a.k.a. Crassostrea gigas), the most widely farmed oysters, are under threat from climate change and emerging pathogens. In part, their resilience may be affected by their microbiome, which, in turn, may be influencedinfluencedinfluencedby ocean warming and acidification. To understand these impacts, we exposed early-development Pacific oyster spat to different temperatures (18°C and 24°C) and pCO2 levels (800, 1,600, and 2,800 μatm) in a fully crossed design for 3 weeks.
    Keywords: Alkalinity, total; Alkalinity, total, standard deviation; Animalia; Aragonite saturation state; Aragonite saturation state, standard deviation; Benthic animals; Benthos; Bicarbonate ion; Bicarbonate ion, standard deviation; Calcite saturation state; Calcite saturation state, standard deviation; Calculated using seacarb after Nisumaa et al. (2010); Calculated using seacarb after Orr et al. (2018); Carbon, inorganic, dissolved; Carbon, inorganic, dissolved, standard deviation; Carbonate ion; Carbonate ion, standard deviation; Carbonate system computation flag; Carbon dioxide; Carbon dioxide, standard deviation; Community composition and diversity; Containers and aquaria (20-1000 L or 〈 1 m**2); Crassostrea gigas; Entire community; Fugacity of carbon dioxide (water) at sea surface temperature (wet air); Fugacity of carbon dioxide in seawater, standard deviation; Laboratory experiment; Laboratory strains; Mollusca; Not applicable; OA-ICC; Ocean Acidification International Coordination Centre; Other studied parameter or process; Partial pressure of carbon dioxide, standard deviation; Partial pressure of carbon dioxide (water) at sea surface temperature (wet air); Pelagos; pH; pH, standard deviation; Salinity; Salinity, standard deviation; Single species; Temperature; Temperature, water; Temperature, water, standard deviation; Treatment; Type of study
    Type: Dataset
    Format: text/tab-separated-values, 210 data points
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  • 7
    ISSN: 1432-1939
    Keywords: Phosphate uptake ; Nutrient pulses ; Size-fractionated phosphate uptake ; Nutrient patches ; Lake fertilization
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Summary Time-course experiments of phosphate uptake by size-fractionated phytoplankton were conducted in oligotrophic Kennedy and Sproat Lakes. The objective was to determine if large phytoplankton obtained more phosphate than smaller cells, when the nutrient was present at higher concentrations. Studies at Kennedy Lake revealed that uptake rates in the 0.2–3.0 μm fraction were very sensitive to the time they were exposed to elevated concentrations; rates determined over the 60–120 min interval were less than 30% of those recorded over the 0–60 min interval. In contrast, there was little difference in uptake rates over these intervals for cells〉3.0 μm. At Sproat Lake phosphate incorporation into the two size fractions was followed after the aerial fertilization of the lake with inorganic nutrients. Following nutrient addition the proportion of phosphate entering the〉3.0 μm size fraction increased from ca. 35% to ca. 85%. Despite these observations, it is doubtful that larger cells are able to sequester enough phosphate from pulses to realize the same specific growth rates as their smaller counterparts.
    Type of Medium: Electronic Resource
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  • 8
    ISSN: 1573-5117
    Keywords: phytoplankton ; viruses ; diversity ; polymerase ; PCR ; DGGE
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Viruses are abundant members of marine and freshwater microbial communities, and are important players in aquatic ecology and geochemical cycles. Recent methodological developments have allowed the use of the polymerase chain reaction (PCR) to examine the diversity of natural communities of viruses without the need for culture. DNA polymerase genes are highly conserved and are, therefore, suitable targets for PCR analysis of microbes that do not encode rRNA. As natural virus communities are largely made up of dsDNA viruses, and as many dsDNA algal viruses encode their own DNA polymerase, PCR primers can be designed to amplify fragments of these genes. This approach has been used to examine the genetic diversity in natural communities of viruses that infect phytoplankton. Algal-virus-specific primers were used to amplify polymerase fragments from natural virus samples, demonstrating the presence of a diverse community of viruses closely related to those that are known to infect phytoplankton. We have modified this approach by using denaturing gradient gel electrophoresis (DGGE) to rapidly analyze PCR products. DGGE will permit rapid and efficient fingerprinting of natural marine viral communities, and allow spatial and temporal differences in viral community structure to be examined. This paper provides a brief overview of how PCR and DGGE can be used to examine diversity in natural viral communities drawing on viruses that infect phytoplankton as an example.
    Type of Medium: Electronic Resource
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  • 9
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    In:  EPIC3CIESM 2003. Ecology of marine viruses. CIESM Workshop Monograph,n° 21, pp. 14-17
    Publication Date: 2019-07-17
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , notRev
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  • 10
    Publication Date: 2010-10-25
    Print ISSN: 0027-8424
    Electronic ISSN: 1091-6490
    Topics: Biology , Medicine , Natural Sciences in General
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