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  • 1
    Online Resource
    Online Resource
    The Marine Microbiome (2022)
    Cham :Springer International Publishing :
    Details
    Keywords: Microbiology. ; Industrial microbiology. ; Microbial ecology. ; Biochemical engineering. ; Microbiology. ; Industrial Microbiology. ; Microbial Ecology. ; Bioprocess Engineering.
    Description / Table of Contents: Chapter 1: A Sea Of Microbes: What’s So Special About Marine Microbiology -- Part I: Diversity And Evolution Of Marine Microorganisms -- Chapter 2: Survival In A Sea Of Gradients: Bacterial And Archaeal Foraging In A Heterogeneous Ocean -- Chapter 3: Marine Cyanobacteria -- Chapter 4: Marine Protists: A Hitchhiker’s Guide To Their Role In The Marine Microbiome -- Chapter 5: Marine Fungi -- Chapter 6: Marine Viruses: Agents Of Chaos, Promoters Of Order -- Chapter 7: Evolutionary Genomics Of Marine Bacteria And Archaea -- Part II: Marine Habitats -- Chapter 8: Towards A Global Perspective Of The Marine Microbiome -- Chapter 9: The Pelagic Light-Dependent Microbiome -- Chapter 10: Microbial Inhabitants Of The Dark Ocean -- Chapter 11: The Subsurface And Oceanic Crust Prokaryotes -- Chapter 12: The Microbiome Of Coastal Sediments -- Chapter 13: Symbiosis In The Ocean Microbiome -- Chapter 14: Marine Extreme Habitats -- Part III: Marine Microbiome From Genomes To Phenomes: Biogeochemical Cycles, Networks, Fluxes, And Interaction -- Chapter 15: Marine Biogeochemical Cycles -- Chapter 16: A Holistic Approach For The Study Of The Role Of Microorganisms In The Marine Ecosystem -- Chapter 17: The Hidden Treasure: Marine Microbiome As Repository Of Bioactive Compounds -- Chapter 18: Ocean Restoration And The Strategic Plan Of The Marine Microbiome. .
    Abstract: This updated and expanded second edition reviews numerous aspects of the marine microbiome and its possible industrial applications. The marine microbiome is the total of microorganisms and viruses in the ocean and seas and in any connected environment, including the seafloor and marine animals and plants. In the first part of the book, diversity, origin and evolution of the marine microorganisms and viruses are discussed. The microbes presented originate from all three domains of life: Bacteria, Archaea, and Eukarya. The second part sheds some light on the different communities: it describes marine habitats and how their inhabitants control biogeochemical cycles. The third part finally examines the microbial ocean as a global system and evaluates methods of utilizing marine microbial resources. Adopting a translational approach, the book connects academic research with industrial applications, making it a fascinating read and valuable resource for microbiologists from both domains.
    Type of Medium: Online Resource
    Pages: XVI, 766 p. 92 illus. in color. , online resource.
    Edition: 2nd ed. 2022.
    ISBN: 9783030903831
    Series Statement: The Microbiomes of Humans, Animals, Plants, and the Environment, 3
    URL: https://doi.org/10.1007/978-3-030-90383-1
    DOI: 10.1007/978-3-030-90383-1
    DDC: 579
    Language: English
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    E-BOOKS (AWI ONLY)
  • 2
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    Occurrence and activity of anammox bacteria in surface sediments of the southern North Sea (2014)
    PANGAEA
    In:  Supplement to: Bale, Nicole Jane; Villanueva, Laura; Fan, Haoxin; Stal, Lucas J; Hopmans, Ellen C; Schouten, Stefan; Sinninghe Damsté, Jaap S (2014): Occurrence and activity of anammox bacteria in surface sediments of the southern North Sea. FEMS Microbiology Ecology, 89(1), 99-110, https://doi.org/10.1111/1574-6941.12338
    Details
    Publication Date: 2023-03-03
    Description: We investigated the occurrence and activity of anaerobic ammonia oxidation (anammox) bacteria in sandy and muddy sand sediments of the southern North Sea. The presence of anammox bacteria was established through the detection of specific phosphocholine-monoether ladderane lipids, 16S rRNA gene, and hydrazine synthase (hzsA) genes. Anammox activity was measured in intact sediment cores (in situ rate) and in sediment slurries (potential rate) as the rate of N2 evolution from 15N-labeled substrates and compared to the transcriptional activity of genes of anammox bacteria. The contribution of anammox to N2 production ranged between 0% and 29%. The potential rate of anammox agreed well with the abundance of anammox bacteria 16S rRNA and hzsA gene copies and the transcriptional activity of the anammox bacteria 16S rRNA gene. We found a higher abundance and activity of anammox bacteria in sediments with higher organic carbon content and also higher activity in summer than in winter. The abundance of anammox bacteria and their potential anammox rates were similar to those reported for other marine coastal sediments, suggesting that potentially they are important contributors to the nitrogen cycle in sandy sediments of shallow continental shelf areas.
    Keywords: 64PE327; 64PE327_1-MUC; 64PE327_4-MUC; 64PE327_6-MUC; 64PE327_7-MUC; 64PE329; 64PE329_1-MUC; 64PE329_4-MUC; 64PE329_6-MUC; 64PE329_7-MUC; 64PE337; 64PE337_1-MUC; 64PE337_4-MUC; 64PE337_6-MUC; 64PE337_7-MUC; 64PE343; 64PE343_1-MUC; 64PE343_4-MUC; 64PE343_6-MUC; 64PE343_7-MUC; Ammonium; Anammox 16s rRNA; Anammox 16s rRNA, standard deviation; Anammox rate; Anammox rate, standard deviation; Carbon, organic, total; CHARLET/NICYCLE; Cruise/expedition; Date/Time of event; DEPTH, sediment/rock; Elevation of event; Event label; Hydrazine synthase; Hydrazine synthase, standard deviation; Latitude of event; Longitude of event; Median, grain size; MUC; MultiCorer; NICYCLE/FOKUZ; NICYCLE/FOKUZ II; NICYCLE/FOKUZ III; Nitrate; Nitrite; Nitrogen production rate; North Sea; PC-monoether; PC-monoether, standard deviation; Pelagia; Phosphate; Salinity; Silicate; Size fraction 〈 0.063 mm, mud, silt+clay; Size fraction 0.125-0.063 mm, 3.0-4.0 phi, very fine sand; Size fraction 0.250-0.125 mm, 2.0-3.0 phi, fine sand; Size fraction 0.500-0.250 mm, 1.0-2.0 phi, medium sand; Station label
    Type: Dataset
    Format: text/tab-separated-values, 364 data points
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    DATA PANGAEA
  • 3
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    Nitrogen fixation rate of Trichodesmium and small diazotrophs in the subtropical northeast Atlantic (2013)
    PANGAEA
    Details
    Publication Date: 2023-03-02
    Keywords: CAIBEX-I; CAIBEX-I_1; CAIBEX-I_2; CAIBEX-I_3; CAIBEX-I_4; CAIBEX-I_5; CAIBEX-I_6; CAIBEX-I_7; CAIBEX-II; CAIBEX-II_01; CAIBEX-II_02; CAIBEX-II_03; CAIBEX-II_04; CAIBEX-II_05; CAIBEX-II_06; CAIBEX-II_07; CAIBEX-II_08; CAIBOX; CAIBOX_01; CAIBOX_02; CAIBOX_03; CAIBOX_04; CAIBOX_05; CAIBOX_06; CAIBOX_07; CAIBOX_08; CAIBOX_09; CAIBOX_10; CAIBOX_11; CAIBOX_12; CAIBOX_13; CAIBOX_14; CAIBOX_15; CAIBOX_16; CAIBOX_17; Calculated after Luo et al. (2012); Chlorophyll a as carbon; Comment; Date/Time of event; DEPTH, water; Event label; Latitude of event; Longitude of event; MAREDAT_Diazotrophs_Collection; Nitrate; Nitrogen Fixation (C2H2 Reduction); Nitrogen fixation rate, total; Nitrogen fixation rate, whole seawater; Northeast Atlantic; Phosphate; Salinity; Sarmiento de Gamboa; Temperature, water; Unicellular cyanobacteria, nitrogen fixation rate
    Type: Dataset
    Format: text/tab-separated-values, 458 data points
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    DATA PANGAEA
  • 4
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    Inorganic carbon outwelling from mangroves and saltmarshes drives coastal acidification (2024)
    PANGAEA
    Details
    Publication Date: 2024-05-22
    Description: Concentrations of alkalinity (TA) and dissolved inorganic carbon (DIC) in porewater as well as in surface water measured during timeseries (fixed location) and spatial surveys (fixed time period) were compiled from 38 mangrove- and 8 saltmarsh-dominated creeks and estuaries. We used data from creeks that were predominantly surrounded by mangrove or saltmarsh vegetation and with minimal confounding factors such as mixed vegetation or large catchments. These creeks were located in either pristine or anthropologically impacted estuaries or coastal areas. Anthropologically impacted areas were defined as areas that were affected by nearby urban or agricultural activities, potentially delivering pollutants, e.g., sewage or fertilizers, to creeks. We also included pristine mangrove- and saltmarsh dominated estuaries. When available, environmental parameters were also recorded, i.e., season, salinity, temperature, pH, dissolved oxygen (DO), water level, porewater tracer radon (222Rn), partial pressure of carbon dioxide (pCO2), dissolved organic carbon (DOC), particulate organic carbon (POC), nitrate and nitrite (NOx), ammonium (NH4), total nitrogen (TN), phosphate (PO4), and total phosphorus (TP). Methods used to determine parameters are explained in each corresponding reference.
    Keywords: According to source references; Alkalinity; Alkalinity, total; Alkalinity, total/Carbon, inorganic, dissolved ratio; Ammonium; Australia; Australia_M29; Australia_M30; Australia_M31; Australia_M32; Australia_M33; Australia_M34; Australia_M35; Australia_M36; Australia_M37; Australia_M38; blue carbon; Boron hydroxide; Brazil; Brazil_M18; Brazil_M19; Brazil_M20; Brazil_M21; CA_USA_S02; Carbon, inorganic, dissolved; Carbon, organic, dissolved; Carbon, organic, particulate; Carbon dioxide, partial pressure; China; China_M03; China_S06; China_S07; China_S08; Condition; Country; DATE/TIME; Date/Time local; Dissolved inorganic carbon; Ecosystem; Ecuador; Ecuador_M22; Event label; French_Guiana_M17; French Guiana; GA_USA_S04; Identification; India; India_M04; India_M05; India_M06; India_M07; India_M08; India_M09; Japan; Japan_M02; Kenya; Kenya_M23; Kenya_M24; LATITUDE; LONGITUDE; MA_USA_S01; Madagascar; Madagascar_M28; mangroves; Nitrogen, total; Nitrogen oxide; Oxygen, dissolved; Palau; Palau_M15; Palau_M16; Papua_New_Guinea_M25; Papua New Guinea; pH; Philippines; Philippines_M10; Phosphate; Phosphorus, total; Radon-222; Reference/source; Salinity; saltmarshes; Sample type; SC_USA_S03; Season; Site; Spain; Spain_S05; Tanzania; Tanzania_M26; Tanzania_M27; Temperature, water; Thailand; Thailand_M14; USA; USA_M01; Vietnam; Vietnam_M11; Vietnam_M12; Vietnam_M13; Water level; Water sample; WS
    Type: Dataset
    Format: text/tab-separated-values, 67107 data points
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    DATA PANGAEA
  • 5
    facet.materialart.
    Unknown
    Inorganic carbon outwelling from mangroves and saltmarshes drives coastal acidification (2022)
    PANGAEA
    Details
    Publication Date: 2024-05-22
    Description: Concentrations of alkalinity (TA) and dissolved inorganic carbon (DIC) in porewater as well as in surface water measured during timeseries (fixed location) and spatial surveys (fixed time period) were compiled from 38 mangrove- and 8 saltmarsh-dominated creeks and estuaries. We used data from creeks that were predominantly surrounded by mangrove or saltmarsh vegetation and with minimal confounding factors such as mixed vegetation or large catchments. These creeks were located in either pristine or anthropologically impacted estuaries or coastal areas. Anthropologically impacted areas were defined as areas that were affected by nearby urban or agricultural activities, potentially delivering pollutants, e.g., sewage or fertilizers, to creeks. We also included pristine mangrove- and saltmarsh dominated estuaries. When available, environmental parameters were also recorded, i.e., season, salinity, temperature, pH, dissolved oxygen (DO), water level, porewater tracer radon (222Rn), partial pressure of carbon dioxide (pCO2), dissolved organic carbon (DOC), particulate organic carbon (POC), nitrate and nitrite (NOx), ammonium (NH4), total nitrogen (TN), phosphate (PO4), and total phosphorus (TP). Methods used to determine parameters are explained in each corresponding reference.
    Keywords: Alkalinity; Alkalinity, total; Alkalinity, total/Carbon, inorganic, dissolved ratio; Ammonium; Australia; Australia_M29; Australia_M30; Australia_M31; Australia_M32; Australia_M33; Australia_M34; Australia_M35; Australia_M36; Australia_M37; Australia_M38; blue carbon; Boron hydroxide; Brazil; Brazil_M18; Brazil_M19; Brazil_M20; Brazil_M21; CA_USA_S02; Carbon, inorganic, dissolved; Carbon, organic, dissolved; Carbon, organic, particulate; Carbon dioxide, partial pressure; China; China_M03; China_S06; China_S07; China_S08; Condition; Country; DATE/TIME; Date/Time local; Dissolved inorganic carbon; Ecosystem; Ecuador; Ecuador_M22; Event label; French_Guiana_M17; French Guiana; GA_USA_S04; Identification; India; India_M04; India_M05; India_M06; India_M07; India_M08; India_M09; Japan; Japan_M02; Kenya; Kenya_M23; Kenya_M24; LATITUDE; LONGITUDE; MA_USA_S01; Madagascar; Madagascar_M28; mangroves; Nitrogen, total; Nitrogen oxide; Oxygen, dissolved; Palau; Palau_M15; Palau_M16; Papua_New_Guinea_M25; Papua New Guinea; pH; Philippines; Philippines_M10; Phosphate; Phosphorus, total; Radon-222; Reference/source; Salinity; saltmarshes; Sample type; SC_USA_S03; Season; Site; Spain; Spain_S05; Tanzania; Tanzania_M26; Tanzania_M27; Temperature, water; Thailand; Thailand_M14; USA; USA_M01; Vietnam; Vietnam_M11; Vietnam_M12; Vietnam_M13; Water level; Water sample; WS
    Type: Dataset
    Format: text/tab-separated-values, 67107 data points
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    DATA PANGAEA
  • 6
    Electronic Resource
    Electronic Resource
    Survival, surfaces and susceptibility – the sensory biology of pathogens (2004)
    Oxford, UK : Blackwell Science Ltd
    Plant pathology 53 (2004), S. 0 
    Details
    ISSN: 1365-3059
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1111/j.1365-3059.2004.01106.x
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    Paper (German National Licenses)
    Fulltext
  • 7
    Electronic Resource
    Electronic Resource
    Development of natural late blight epidemics in pure and mixed plots of potato cultivars with different levels of partial resistance (2003)
    Oxford, UK : Blackwell Science Ltd
    Plant pathology 52 (2003), S. 0 
    Details
    ISSN: 1365-3059
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Late blight, caused by Phytophthora infestans, is the most severe disease of potato worldwide. Controlling late blight epidemics is difficult, and resistance of host cultivars is either not effective enough, or too easily overcome by the pathogen to be used alone. In field trials conducted for 3 years under natural epidemics, late blight severity was significantly lower in a susceptible cultivar growing in rows alternating with partially resistant cultivars (mixtures) than in unmixed plots of the susceptible cultivar alone. Partially resistant cultivars behaved similarly in unmixed and mixed plots. Mixtures of cultivars reduced disease progress rates and sometimes delayed disease onset over unmixed plots, but did so significantly only for the slowest epidemic. This suggests that reduction of area under the disease progress curve (AUDPC) in mixtures resulted from the cumulative action of minor effects. Disease distribution was focal in all plots at all dates, as shown by Morisita's index values significantly exceeding 1. Significant yield increases for the susceptible cultivar, and occasionally for the partially resistant ones, were observed in mixed-cultivar plots compared with single-cultivar plots. These results show that cultivar mixtures can significantly reduce natural, polycyclic epidemics in broadleaved plants attacked by pathogens causing rapidly expanding lesions.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1046/j.1365-3059.2003.00882.x
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  • 8
    Electronic Resource
    Electronic Resource
    Distribution and fungicide sensitivity of Colletotrichum coccodes in French potato-producing areas (1997)
    Oxford, UK : Blackwell Science Ltd
    Plant pathology 46 (1997), S. 0 
    Details
    ISSN: 1365-3059
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Black dot, caused by Colletotrichum coccodes, is of potential concern to potato production in France as part of the tuber-blemishing disease complex. The lack of information about the actual distribution of the pathogen in potato-producing areas led to a survey of the occurrence of the disease. Black dot symptoms were observed on roots, stems and/or tubers of the 82 potato cultivars examined in 1994. A baiting bioassay, using cuttings of potato cultivars Bintje and Urgenta, revealed the presence of the pathogen in all 37 soil samples tested, which had been collected throughout the main French potato growing areas. In vitro, growth of five C. coccodes isolates recovered from diseased potatoes grown in western and southern France was severely affected by imazalil, tolchlofos-methyl and, to a lesser extent, mancozeb and thiabendazole. Conversely, iprodione, flutolanil and pencycuron were ineffective in reducing the growth of these isolates. These data indicate that C. coccodes is widespread in French potato cropping areas, that currently popular cultivars are susceptible to the disease, and that at least some of the fungicides commonly applied to seed tubers are ineffective against the pathogen. A better diagnosis of the disease, but also the insensitivity of the pathogen to several chemicals frequently used on seed tubers for controlling black or silver scurfs, might thus provide explanations for the apparent increase in black dot occurrence in recent years.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1046/j.1365-3059.1997.d01-60.x
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  • 9
    Electronic Resource
    Electronic Resource
    Plant Pathogens and Plant Diseases (1998)
    Oxford, U.K. and Cambridge, USA : Blackwell Science Ltd
    Plant pathology 47 (1998), S. 0 
    Details
    ISSN: 1365-3059
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1046/j.1365-3059.1998.0223e.x
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  • 10
    Electronic Resource
    Electronic Resource
    Incidence of apothecia of Tapesia yallundae at setaside sites in England and sensitivity of the ascospore offspring to the fungicides benomyl and prochloraz (1995)
    Oxford, UK : Blackwell Publishing Ltd
    Plant pathology 44 (1995), S. 0 
    Details
    ISSN: 1365-3059
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: A total of 45 field sites in England were surveyed once for the presence of apothecia of Tapesia yallundae from 1992 to 1994. Apothecia were found at 21 locations and were mainly present on less than 3% of stems. However, apothecia were found on 1532% of stems at four sites. Analysis of the growth characteristics of ascospore isolates from seven sites showed that most produced colonies characteristic of the W-type of T. yallundae, with only one site yielding the R-type, Most ascospore isolates were resistant to the fungicide benomyl and effectively all remained sensitive to prochloraz. The results of the study are discussed in relation to the fungicidal control and epidemiology of T. yallundae, and the risk of spread of disease from set-aside sites.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1111/j.1365-3059.1995.tb02738.x
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