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  • Computational Chemistry and Molecular Modeling  (2)
  • MCSCF method, optimization by Brillouin's theorem  (1)
  • Molecular mechanics  (1)
  • Ring contraction-ring expansion  (1)
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  • 1
    ISSN: 1573-4951
    Keywords: α-helical model system ; Conformational analysis ; Counterpoise method ; Hartree-Fock calculations ; Histamine H2 receptor ; Molecular mechanics
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Notes: Summary Mutation studies on the histamine H2 receptor were reported by Gantz et al. [J. Biol. Chem., 267 (1992) 20840], which indicate that both the mutation of the fifth transmembrane Asp186 (to Ala186) alone or in combination with Thr190 (to Ala190) maintained, albeit partially, the cAMP response to histamine. Recently, we have shown that histamine binds to the histamine H2 receptor as a monocation in its proximal tautomeric form, and, moreover, we suggested that a proton is donated from the receptor towards the tele-position of the agonist, thereby triggering the biological effect [Nederkoorn et al., J. Mol. Graph., 12 (1994) 242; Eriks et al., Mol. Pharmacol., 44 (1993) 886]. These findings result in a close resemblance with the catalytic triad (consisting of Ser, His and Asp) found in serine proteases. Thr190 resembles a triad's serine residue closely, and could also act as a proton donor. However, the mutation of Thr190 to Ala190 — the latter is unable to function as a proton donor — does not completely abolish the agonistic cAMP response. At the fifth transmembrane α-helix of the histamine H2 receptor near the extracellular surface, another amino acid is present, i.e. Tyr182, so an alternative couple of amino acids, Tyr182 and Asp186, could constitute the histamine binding site at the fifth α-helix instead of the (mutated) couple Asp186 and Thr190. In the first part of our present study, this hypothesis is investigated with the aid of an oligopeptide with an α-helical backbone, which represents a part of the fifth transmembrane helix. Both molecular mechanics and ab initio data lead to the conclusion that the Tyr182/Asp186 couple is most likely to act as the binding site for the imidazole ring present in histamine.
    Type of Medium: Electronic Resource
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  • 2
    Electronic Resource
    Electronic Resource
    Springer
    Theoretical chemistry accounts 44 (1977), S. 97-107 
    ISSN: 1432-2234
    Keywords: MCSCF method, optimization by Brillouin's theorem ; LiH2, potential energy surface for
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Notes: Abstract The generalized Brillouin theorem is used to construct an optimization procedure for MCSCF functions by iterative contracted CI calculations. Special attention is paid to the MO transformation step in each iteration. In this method the MCSCF calculation may easily be augmented by a restricted CI calculation involving a configuration set which is uniquely determined by the trial function. An application to the calculation of the potential energy surface for linear LiH2 in the reaction LiH + H⇆Li + H2 leads to the conclusion that this restricted CI is necessary, in order to obtain satisfactory results for the potential energy barrier in this reaction.
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  • 3
    ISSN: 1434-193X
    Keywords: Pyrolysis ; Ring contraction-ring expansion ; Rearrangements ; Homolytic scission ; IGLOIII//6-31G ; Chemistry ; General Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: -Flash vacuum thermolysis (FVT, 1000 °C ≥ T ≥ 1200 °C) of acenaphtho[1,2-a]acenaphthylene (3, C22H12) gave the C22H12 cyclopenta-fused polycyclic aromatic hydrocarbon (CP-PAH) acenaphtho[1,2-e]acenaphthylene (4), cyclopenta[cd]perylene (5) and cyclopenta[def]benzo[hi]chrysene (6). Whereas the formation of 4 is explained by a ring contraction/ring expansion rearrangement of 3, the identification of 5 and 6 suggests that 3 also undergoes homolytic scission of a five-membered ring's Carbon-Carbon single bond furnishing the transient diradical intermediate 7. Ring closure of 7to form 8 after rotation around the Carbon-Carbon single bond of the intact five-membered ring followed by hydrogen shifts will give 6. The latter can rearrange subsequently into 5by ring contraction/ring expansion. The structural assignment of 4 and 5 was supported by independent FVT of 6,12-bis(1-chloroethenyl)chrysene (14) and 3-(1-chloroethenyl)perylene (23), respectively. FVT of 14 (900-1200 °C) gave in a consecutive process 6,12-bis(ethynyl)chrysene (15), 9-ethynylbenz[j]acephenanthrylene (16) and bis(cyclopenta[hi,qr])chrysene (17). Although at T ≥ 900 °C 17 selectively rearranges into 4 by ring contraction/ring expansion, at 1200 °C the latter is converted into 5 presumably via a diradical intermediate obtained by homolytic scission of a single Carbon-Carbon bond of a five-membered ring. FVT of 23 gave in situ 3-ethynylperylene (25), which at 1000 °C is nearly quantitatively converted into 5. The propensity of internal cyclopenta moieties to undergo homolytic scission of a five-membered ring′s Carbon-Carbon single bond was corroborated by independent FVT of benzo[k]- (11) and benzo[j]fluoranthene (12). Previously unknown thermal pathways to important (CP)-PAH combustion effluents are disclosed at T ≥ 1000 °C.
    Additional Material: 4 Ill.
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  • 4
    Electronic Resource
    Electronic Resource
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 40 (1991), S. 201-210 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: By relating the blocking structure of the relevant matrix of overlap-integrals to its cofactors, the Slater-Condon rules for the evaluation of an element of a matrix representation of an electronic Hamiltonian in a Slater determinant basis are generalized to the case where not all orbitals are orthogonal. This yields a set of 33 rules, which allows for an efficient implementation of the valence bond theory.
    Additional Material: 5 Ill.
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  • 5
    Electronic Resource
    Electronic Resource
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 58 (1996), S. 351-360 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Ab initio valence bond calculations are performed for the three lowest states of the oxygen molecule (3Σ-g, 1Δg, and 1Σ+g). One objective of the present study was to make a contribution to previous valence bond discussions about the oxygen “double” bond. Further, we study the origin of a small barrier in the potential energy surface of the ground state. Two compact models are employed to maintain the clear picture that can be offered by the valence bond method. The first model has only the Rumer structures that are essential for bonding and a proper dissociation. The second model, in addition, has structures which represent excited atoms. These prove to be important for the dissociation energies. For both models, the orbitals are fully optimized. The spectroscopic data obtained are significantly better than are the (few) valence bond results on O2 that have been published and have the quality of multiconfiguration self-consistent field calculations in which the same valence space is used. The “hump” in the potential energy surface of the ground state is shown to arise from a spin recoupling. The free atoms correspond to a spin coupling that is incapable of describing the formation of bonds. Only at short distances, an alternative spin coupling provides bonding and the repulsive curve is converted into an attractive one. Our results on this subject support a valence bond explanation previously given by McWeeny [R. McWeeny, Int. J. Quantum Chem. Symp. 24, 733 (1990)]. © 1996 John Wiley & Sons, Inc.
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