ALBERT

All Library Books, journals and Electronic Records Telegrafenberg

feed icon rss

Your email was sent successfully. Check your inbox.

An error occurred while sending the email. Please try again.

Proceed reservation?

Export
Filter
  • Bronze Age  (2)
  • Density functional calculations  (2)
  • Molecular dynamics  (2)
  • Transition states  (2)
  • 1
    ISSN: 0948-5023
    Keywords: Keywords  FAD ; Photolyase ; Molecular dynamics
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Notes: Abstract   In order to gain insight into the light-driven repair of DNA by the enzyme DNA photolyase, the conformation of the photoactive cofactor FAD, a flavin adenine dinucleotide, has been studied by molecular dynamic simulations. In contrast to FAD in the gas phase and in water where the MD procedure yields various "open" I-shaped as well as "closed" U-shaped conformations, the calculations of FAD binding to the enzyme show essentially a single U-shaped conformation of this cofactor which, so far, is unique among FAD-carrying proteins. It is characteristic for this U-shaped conformation that the FAD components occupy opposite sides of the pocket in the surface of the protein which provides the binding site for the defect pyrimidine dimer structure on DNA. In fact, the calculated U-shaped conformation is very close to the one revealed by the X-ray structure analysis of DNA photolyase. Moreover, the simulations yield details on the binding of the photoactive isoalloxazine moiety and the dynamics of the amino acids forming the binding cavity of the enzyme.
    Type of Medium: Electronic Resource
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 2
    Electronic Resource
    Electronic Resource
    Springer
    Journal of biomolecular NMR 1 (1991), S. 71-82 
    ISSN: 1573-5001
    Keywords: rop ; Protein conformation ; 2D NMR ; Molecular dynamics ; Repressor proteins
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Chemistry and Pharmacology
    Notes: Summary The structure of the ColE1 repressor of primer (rop) protein in solution was determined from the proton nuclear magnetic resonance data by a combined use of distance geometry and restrained molecular dynamics calculations. A set of structures was determined with low internal energy and virtually no violations of the experimental distance restraints. Rop forms homodimers: Two helical hairpins are arranged as an antiparallel four helix bundle with a left-handed rope-like twist of the helix axes and with left-handed bundle topology. The very compact packing of the side chains in the helix interfaces of the rop coiled-coil structure may well account for its high stability. Overall, the solution structure is highly similar to the recently determined X-ray structure (Banner, D.W., Kokkinidis, M. and Tsernoglou, D. (1987)J. Mol. Biol.,196, 657–675), although there are minor differences in regions where packing forces appear to influence the crystal structure.
    Type of Medium: Electronic Resource
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 3
    Electronic Resource
    Electronic Resource
    Springer
    Vegetation history and archaeobotany 2 (1993), S. 213-232 
    ISSN: 1617-6278
    Keywords: Human impact ; Lake Constance ; Neolithic ; Bronze Age ; Climate
    Source: Springer Online Journal Archives 1860-2000
    Topics: Archaeology , Biology
    Notes: Abstract The second part of a pollen profile from Hornstaad/Lake Constance (Germany), containing the Atlantic and Subboreal (6400 cal B.C. to 700 cal B.C.) is presented. The diagram has a sampling interval of 1 cm and an average time resolution of 10 years. The cereal curve provided the basis for cereal zones, which are used to classify the human impact. Twenty-six cereal zones can be distinguished, most of them divided into subzones, from 5500 cal B.C. to 700 cal B.C. They correspond to both known and, mostly, unknown settlements in the surrounding landscape from the Early Neolithic to the Late Bronze Age. Charcoal and chemical analyses as well as sediment accumulation, confirmed by accelerator dates, provide evidence for human impact on the environment.
    Type of Medium: Electronic Resource
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 4
    Electronic Resource
    Electronic Resource
    Springer
    Vegetation history and archaeobotany 5 (1996), S. 65-79 
    ISSN: 1617-6278
    Keywords: Late Neolithic ; Bronze Age ; Germany ; Prehistoric farming ; Cultural landscape
    Source: Springer Online Journal Archives 1860-2000
    Topics: Archaeology , Biology
    Notes: Abstract Botanical on-site and off-site data relating to Late Neolithic and Bronze Age settlement phases in south-western Germany are compared with a view to reconstructing economic and environmental change. The large differences between the Neolithic and Bronze Age as regards forest composition, crops and crop weeds, and charcoal input are explained in terms of different types of agronomic systems and hence cultural landscape. In the Late Neolithic, shifting cultivation, involving slash and burn, was practised with the result that the landscape was largely dominated by tall shrubs. In the Bronze Age there were more or less permanent arable fields with only short fallow phases. The agronomic system and the resulting cultural landscape was already similar to that of the medieval period and, especially, early medieval time.
    Type of Medium: Electronic Resource
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 5
    Electronic Resource
    Electronic Resource
    Weinheim : Wiley-Blackwell
    Berichte der deutschen chemischen Gesellschaft 130 (1997), S. 1745-1749 
    ISSN: 0009-2940
    Keywords: Density functional calculations ; Tetra(amino)methane ; Tetra(amino)silane ; Transition states ; Chemistry ; Inorganic Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: In all-electron density functional calculations on mono- and tetraaminosubstituted methane and silane the coordination around the nitrogen center is found, in complete agreement with experiment, to be less pyramidal in the silicon compounds. The calculated barrier to inversion at nitrogen is only 0.6 kcal/mol in silylamine, while in methylamine it is 5.5 kcal/mol. The larger flexibility is attributed to the greater ionic character of the Si-N bond compared to that of the C-N bond. In tetra(amino)methane, inversion of one amino group leads to a local minimum (calculated inversion barrier: 6.4 kcal/mol), while a corresponding structure (or barrier) does not exist for the silicon compound. Due to the steric influence of the amino groups, the barrier to rotation around the C-N bond is larger in the tetrasubstituted compound (6.4 kcal/mol compared to 2.3 kcal/mol in methylamine). While the average binding energy of the amino groups is similar in both tetra(amino)compounds, the binding energy of the fourth ligand is about 25% larger in the silicon compound for both homolytic and heterolytic bond cleavage. This difference arises from the relative stabilization of the tri(amino)-methyl species, due to some n contribution to the C-N bond.
    Additional Material: 4 Ill.
    Type of Medium: Electronic Resource
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 6
    Electronic Resource
    Electronic Resource
    Weinheim : Wiley-Blackwell
    Berichte der deutschen chemischen Gesellschaft 1999 (1999), S. 2135-2145 
    ISSN: 1434-1948
    Keywords: Density functional calculations ; Epoxidation ; Peroxo complexes ; Titanium ; Transition states ; Chemistry ; General Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Epoxidation of olefins by TiIV peroxo and hydroperoxo (alkylperoxo) complexes was investigated using a hybrid DFT method (B3LYP). Reaction energies and activation barriers for direct oxygen transfer to ethylene as a model olefin were computed for various model complexes to compare the epoxidation activity of Ti(η2-O2) and TiOOR (R = H, CH3) moieties. The activity of complexes with a Ti(O2) peroxo group is shown to be essentially quenched when the coordination sphere of the complex is saturated by strongly basic (σ-donor) ligands. In contrast, the activity of a TiOOH functional group depends only weakly on the saturation of the coordination sphere of the Ti center. Substitution of methyl for hydrogen in a TiOOH group is found to slightly increase the activation barrier of epoxidation. The computational results give preference to reaction paths that involve TiOOR species. The factors governing the activity of Ti(O2) and TiOOR groups, in particular the effects of donor ligands, are discussed on the basis of a molecular orbital analysis.
    Additional Material: 9 Ill.
    Type of Medium: Electronic Resource
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
Close ⊗
This website uses cookies and the analysis tool Matomo. More information can be found here...