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  • 1
    Publication Date: 2022-05-25
    Description: Author Posting. © The Author(s), 2014. This is the author's version of the work. It is posted here by permission of Springer for personal use, not for redistribution. The definitive version was published in Earth Science Informatics 8 (2015): 721-739, doi:10.1007/s12145-014-0202-2.
    Description: By broad consensus, Open Data presents great value. However, beyond that simple statement, there are a number of complex, and sometimes contentious, issues that the science community must address. In this review, we examine the current state of the core issues of Open Data with the unique perspective and use cases of the ocean science community: interoperability; discovery and access; quality and fitness for purpose; and sustainability. The topics of Governance and Data Publication are also examined in detail. Each of the areas covered are, by themselves, complex and the approaches to the issues under consideration are often at odds with each other. Any comprehensive policy on Open Data will require compromises that are best resolved by broad community input. In the final section of the review, we provide recommendations that serve as a starting point for these discussions.
    Description: The authors acknowledge the support of the National Science Foundation through Grant Award No. OCE-1143683.
    Description: 2016-01-07
    Keywords: Open Data ; Interoperability ; Governance ; Data publication
    Repository Name: Woods Hole Open Access Server
    Type: Preprint
    Format: application/pdf
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  • 2
    Publication Date: 2021-05-19
    Description: Presentation at 'Evolving and Sustaining Ocean Best Practices Workshop, Intergovernmental Oceanographic Commission, Paris, France, 15-17 Nov 2017'
    Description: Published
    Keywords: Best practices ; Digital repositories ; Ontologies ; Controlled vocabularies ; Semantic searching
    Repository Name: AquaDocs
    Type: Conference Material , Non Refereed
    Format: 66 slides
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  • 3
    Publication Date: 2021-05-19
    Description: Presentation at 'Evolving and Sustaining Ocean Best Practices Workshop, Intergovernmental Oceanographic Commission, Paris, France, 15-17 Nov 2017'
    Description: Published
    Keywords: Best practices
    Repository Name: AquaDocs
    Type: Conference Material , Non Refereed
    Format: 23 slides
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  • 4
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    AtlantOS Ocean Best Practices Working Group
    Publication Date: 2021-05-19
    Description: Presentation at 'Evolving and Sustaining Ocean Best Practices Workshop, Intergovernmental Oceanographic Commission, Paris, France, 15-17 Nov 2017'
    Description: Published
    Keywords: Best practices ; Journals
    Repository Name: AquaDocs
    Type: Conference Material , Non Refereed
    Format: 17 slides
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  • 5
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    AtlantOS Ocean Best Practices Working Group
    Publication Date: 2021-05-19
    Description: Presentation at 'Evolving and Sustaining Ocean Best Practices Workshop, Intergovernmental Oceanographic Commission, Paris, France, 15-17 Nov 2017'
    Description: Published
    Keywords: Best practices ; Best Practices Working Group
    Repository Name: AquaDocs
    Type: Conference Material , Non Refereed
    Format: 12 slides
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  • 6
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    AtlantOS Ocean Best Practices Working Group
    Publication Date: 2021-05-19
    Description: Presentation at 'Evolving and Sustaining Ocean Best Practices Workshop II, Intergovernmental Oceanographic Commission, Paris, France, 04-06 Dec 2018.'
    Description: Published
    Keywords: Best practices
    Repository Name: AquaDocs
    Type: Conference Material , Not Known
    Format: 8 slides
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  • 7
    Publication Date: 2022-05-26
    Description: © The Author(s), 2019. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Lombard, F., Boss, E., Waite, A. M., Vogt, M., Uitz, J., Stemmann, L., Sosik, H. M., Schulz, J., Romagnan, J., Picheral, M., Pearlman, J., Ohman, M. D., Niehoff, B., Moeller, K. M., Miloslavich, P., Lara-Lpez, A., Kudela, R., Lopes, R. M., Kiko, R., Karp-Boss, L., Jaffe, J. S., Iversen, M. H., Frisson, J., Fennel, K., Hauss, H., Guidi, L., Gorsky, G., Giering, S. L. C., Gaube, P., Gallager, S., Dubelaar, G., Cowen, R. K., Carlotti, F., Briseno-Avena, C., Berline, L., Benoit-Bird, K., Bax, N., Batten, S., Ayata, S. D., Artigas, L. F., & Appeltans, W. Globally consistent quantitative observations of planktonic ecosystems. Frontiers in Marine Science, 6, (2019):196, doi:10.3389/fmars.2019.00196.
    Description: In this paper we review the technologies available to make globally quantitative observations of particles in general—and plankton in particular—in the world oceans, and for sizes varying from sub-microns to centimeters. Some of these technologies have been available for years while others have only recently emerged. Use of these technologies is critical to improve understanding of the processes that control abundances, distributions and composition of plankton, provide data necessary to constrain and improve ecosystem and biogeochemical models, and forecast changes in marine ecosystems in light of climate change. In this paper we begin by providing the motivation for plankton observations, quantification and diversity qualification on a global scale. We then expand on the state-of-the-art, detailing a variety of relevant and (mostly) mature technologies and measurements, including bulk measurements of plankton, pigment composition, uses of genomic, optical and acoustical methods as well as analysis using particle counters, flow cytometers and quantitative imaging devices. We follow by highlighting the requirements necessary for a plankton observing system, the approach to achieve it and associated challenges. We conclude with ranked action-item recommendations for the next 10 years to move toward our vision of a holistic ocean-wide plankton observing system. Particularly, we suggest to begin with a demonstration project on a GO-SHIP line and/or a long-term observation site and expand from there, ensuring that issues associated with methods, observation tools, data analysis, quality assessment and curation are addressed early in the implementation. Global coordination is key for the success of this vision and will bring new insights on processes associated with nutrient regeneration, ocean production, fisheries and carbon sequestration.
    Description: Much of this manuscript flows from discussions of the authors with the members of SCOR working groups 150 (TOMCAT) and 154 (P-OBS) as well as discussions with the greater community in various GOOS workshops. We also thank Mike Sieracki, Cabell Davis, Daniele Iudicone, Eric Karsenti, Sebastien Colin, Colomban de Vargas, Ulf Riebesell, Fabrice Not, David Checkley, George Jackson, Cédric Guigand, Ed Urban, Frank Muller-Karger, Sanae Chiba and Daniel Dunn, who contributed to the initial abstracts to OceanObs'19. FL is supported by the Institut Universitaire de France. EB is supported by the NASA biology and biogeochemistry program. RKi and HH were supported by the German Science Foundation through the Collaborative Research Center 754 ‘Climate-Biogeochemistry Interactions in the Tropical Ocean’. SDA acknowledges the CNRS for her sabbatical year as visiting researcher at ISYEB on the use of genomics and next generation sequencing for plankton studies. HS acknowledges support from the Simons Foundation, the U.S. National Science Foundation, and the U.S. National Oceanic and Atmospheric Administration through the Cooperative Institute for the North Atlantic Region. FL and EB contribution was also inspired by their years of work within the Tara Expeditions initiative.
    Keywords: plankton ; imaging ; OceanObs ; autonomous platforms ; global observing ; EOVs ; ECVs
    Repository Name: Woods Hole Open Access Server
    Type: Article
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  • 8
    Publication Date: 2022-10-26
    Description: © The Author(s), 2019. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Pearlman, J., Bushnell, M., Coppola, L., Karstensen, J., Buttigieg, P. L., Pearlman, F., Simpsons, P., Barbier, M., Muller-Karger, F. E., Munoz-Mas, C., Pissierssens, P., Chandler, C., Hermes, J., Heslop, E., Jenkyns, R., Achterberg, E. P., Bensi, M., Bittig, H. C., Blandin, J., Bosch, J., Bourles, B., Bozzano, R., Buck, J. J. H., Burger, E. F., Cano, D., Cardin, V., Llorens, M. C., Cianca, A., Chen, H., Cusack, C., Delory, E., Garello, R., Giovanetti, G., Harscoat, V., Hartman, S., Heitsenrether, R., Jirka, S., Lara-Lopez, A., Lanteri, N., Leadbetter, A., Manzella, G., Maso, J., McCurdy, A., Moussat, E., Ntoumas, M., Pensieri, S., Petihakis, G., Pinardi, N., Pouliquen, S., Przeslawski, R., Roden, N. P., Silke, J., Tamburri, M. N., Tang, H., Tanhua, T., Telszewski, M., Testor, P., Thomas, J., Waldmann, C., & Whoriskey, F. Evolving and sustaining ocean best practices and standards for the next decade. Frontiers in Marine Science, 6, (2019):277, doi:10.3389/fmars.2019.00277.
    Description: The oceans play a key role in global issues such as climate change, food security, and human health. Given their vast dimensions and internal complexity, efficient monitoring and predicting of the planet’s ocean must be a collaborative effort of both regional and global scale. A first and foremost requirement for such collaborative ocean observing is the need to follow well-defined and reproducible methods across activities: from strategies for structuring observing systems, sensor deployment and usage, and the generation of data and information products, to ethical and governance aspects when executing ocean observing. To meet the urgent, planet-wide challenges we face, methods across all aspects of ocean observing should be broadly adopted by the ocean community and, where appropriate, should evolve into “Ocean Best Practices.” While many groups have created best practices, they are scattered across the Web or buried in local repositories and many have yet to be digitized. To reduce this fragmentation, we introduce a new open access, permanent, digital repository of best practices documentation (oceanbestpractices.org) that is part of the Ocean Best Practices System (OBPS). The new OBPS provides an opportunity space for the centralized and coordinated improvement of ocean observing methods. The OBPS repository employs user-friendly software to significantly improve discovery and access to methods. The software includes advanced semantic technologies for search capabilities to enhance repository operations. In addition to the repository, the OBPS also includes a peer reviewed journal research topic, a forum for community discussion and a training activity for use of best practices. Together, these components serve to realize a core objective of the OBPS, which is to enable the ocean community to create superior methods for every activity in ocean observing from research to operations to applications that are agreed upon and broadly adopted across communities. Using selected ocean observing examples, we show how the OBPS supports this objective. This paper lays out a future vision of ocean best practices and how OBPS will contribute to improving ocean observing in the decade to come.
    Description: The Ocean Best Practices project has received funding from the European Union’s Horizon 2020 Research and Innovation Program under grant agreement no: 633211 (AtlantOS), no. 730960 (SeaDataCloud) and no: 654310 (ODIP). Funding was also received from the NSF OceanObs Research Coordination Network under NSF grant 1143683. The Best Practices Handbook for fixed observatories has been funded by the FixO3 project financed by the European Commission through the Seventh Framework Programme for Research, grant agreement no. 312463. The Harmful Algal Blooms Forecast Report was funded by the Interreg Atlantic Area Operational Programme Project PRIMROSE (Grant Agreement No. EAPA_182/2016), and the AtlantOS project (see above). PB acknowledges funding from the Helmholtz Programme Frontiers in Arctic Marine Monitoring (FRAM) conducted by the Alfred-Wegener-Institut. JM acknowledges fundng from the WeObserve project under the European Union’s Horizon 2020 Research and Innovation Program (grant agreement no. 776740). MTe acknowledges support from the US National Science Foundation grant OCE-1840868 to the Scientific Committee on Oceanic Research (SCOR, US) FM-K acknowledges support by NSF Grant 1728913 ‘OceanObS Research Coordination Network’. Funding was also provided by NASA grant NNX14AP62A ‘National Marine Sanctuaries as Sentinel Sites for a Demonstration Marine Biodiversity Observation Network (MBON)’ funded under the National Ocean Partnership Program (NOPP RFP NOAA-NOS-IOOS-2014-2003803 in partnership between NOAA, BOEM, and NASA), and the U.S. Integrated Ocean Observing System (IOOS) Program Office.
    Keywords: Best practices ; Sustainability ; Interoperability ; Digital repository ; Peer review ; Ocean observing ; Ontologies ; Methodologies
    Repository Name: Woods Hole Open Access Server
    Type: Article
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