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  • Baltic Sea; BED; Local adaptation; methylation call; population genomics; SNP; three-spined stickleback; Whole genome sequencing  (2)
  • Alkalinity, total; Alkalinity, total, standard deviation; Animalia; Aragonite saturation state; Bicarbonate ion; BIOACID; Biological Impacts of Ocean Acidification; Biomass/Abundance/Elemental composition; Calcite saturation state; Calculated using seacarb after Nisumaa et al. (2010); Carbon, inorganic, dissolved; Carbon, inorganic, dissolved, standard deviation; Carbonate ion; Carbonate system computation flag; Carbon dioxide; Carbon dioxide, partial pressure, standard deviation; Chordata; Coast and continental shelf; DATE/TIME; EPOCA; EUR-OCEANS; European network of excellence for Ocean Ecosystems Analysis; European Project on Ocean Acidification; Experimental treatment; Fugacity of carbon dioxide (water) at sea surface temperature (wet air); Gadus morhua; Gadus morhua, larvae, dry mass; Gadus morhua, lipid content; Growth/Morphology; Laboratory experiment; Mesocosm or benthocosm; Nekton; Partial pressure of carbon dioxide (water) at sea surface temperature (wet air); Pelagos; pH; pH, standard deviation; Polar; Salinity; Salinity, standard deviation; Sample ID; Single species; Species; Temperature, standard deviation; Temperature, water  (1)
  • Laminaria
Collection
Keywords
Publisher
Years
  • 1
    Electronic Resource
    Electronic Resource
    Factors influencing depth distribution of soft bottom inhabiting Laminaria saccharina (L.) Lamour. in Kiel Bay, Western Baltic (1996)
    Springer
    Hydrobiologia 326-327 (1996), S. 117-123 
    Details
    ISSN: 1573-5117
    Keywords: biological interaction ; depth distribution ; Laminaria ; light ; seaweed ; Streblonema ; upper limit ; UV
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract The kelp Laminaria saccharina dominates soft bottoms in 4–10 m depth in Kiel Bay. Experimental sporophytes transplanted to 2 and 5 m depth showed the typical annual growth pattern of Laminaria species. Surprisingly, 2 m plants died after the first resting phase, whereas 5 m plants survived and showed outgrowth of a new blade generation. Thalli at both depths were infected with the brown algal endophyte Streblonema aecidioides, with host deformations being significantly stronger in 2 m plants. Growth rates of infected sporophytes were reduced. Exclusion of UV light in 2 m depth resulted in less infected thalli. Discs excised from L. saccharina and cultivated in different photon fluence rates from 10–600 µmol m−2 s−1 did not differ in growth rate, photosynthesis or dark respiration. Hence, an exclusion of L. saccharina from shallow depths caused by high light cannot be concluded. We suggest the biological interaction with the endophyte S. aecidioides, amplified by UV light, to be most important for the exclusion of L. saccharina from shallow depths in the western Baltic.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1007/BF00047796
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    Paper (German National Licenses)
    Fulltext
  • 2
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    Unknown
    High quality G-to-A SNPs from the genomes of 96 wild caught three-spine sticklebacks (2019)
    PANGAEA
    Details
    Publication Date: 2023-01-13
    Description: To improve the methylation estimates in our study, we corrected for SNPs, which could have led to a wrong methylation call. The excluded positions were derived with custom written perl scripts from C-to-T and G-to-A-SNPs with genotype quality of 20 and a minimum allele frequency of 0.005 from the 96 wild caught three-spined sticklebacks with a combination of custom written Perl and R-scripts using packages from methylkit and GenomicRanges. This BED-file contains the G-to-A-SNPs, in which the first field is the name of the chromosome; the second describes the start position and the third the end position of the feature in standard chromosomal coordinates.
    Keywords: Baltic Sea; BED; Local adaptation; methylation call; population genomics; SNP; three-spined stickleback; Whole genome sequencing
    Type: Dataset
    Format: application/zip, 5.8 MBytes
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    DATA PANGAEA
  • 3
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    Unknown
    High quality C-to-T SNPs from the genomes of 96 wild caught three-spine sticklebacks (2019)
    PANGAEA
    Details
    Publication Date: 2023-01-13
    Description: To improve the methylation estimates in our study, we corrected for SNPs, which could have led to a wrong methylation call. The excluded positions were derived with custom written perl scripts from C-to-T and G-to-A-SNPs with genotype quality of 20 and a minimum allele frequency of 0.005 from the 96 wild caught three-spined sticklebacks with a combination of custom written Perl and R-scripts using packages from methylkit and GenomicRanges. This BED-file contains the C-to-T SNPs, in which the first field is the name of the chromosome; the second describes the start position and the third the end position of the feature in standard chromosomal coordinates.
    Keywords: Baltic Sea; BED; Local adaptation; methylation call; population genomics; SNP; three-spined stickleback; Whole genome sequencing
    Type: Dataset
    Format: application/zip, 5.8 MBytes
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    DATA PANGAEA
  • 4
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    Unknown
    Seawater carbonate chemistry and Atlantic cod, Gadus morhua dry mass and lipid content during experiments, 2012 (2012)
    PANGAEA
    Details
    Publication Date: 2024-03-27
    Keywords: Alkalinity, total; Alkalinity, total, standard deviation; Animalia; Aragonite saturation state; Bicarbonate ion; BIOACID; Biological Impacts of Ocean Acidification; Biomass/Abundance/Elemental composition; Calcite saturation state; Calculated using seacarb after Nisumaa et al. (2010); Carbon, inorganic, dissolved; Carbon, inorganic, dissolved, standard deviation; Carbonate ion; Carbonate system computation flag; Carbon dioxide; Carbon dioxide, partial pressure, standard deviation; Chordata; Coast and continental shelf; DATE/TIME; EPOCA; EUR-OCEANS; European network of excellence for Ocean Ecosystems Analysis; European Project on Ocean Acidification; Experimental treatment; Fugacity of carbon dioxide (water) at sea surface temperature (wet air); Gadus morhua; Gadus morhua, larvae, dry mass; Gadus morhua, lipid content; Growth/Morphology; Laboratory experiment; Mesocosm or benthocosm; Nekton; Partial pressure of carbon dioxide (water) at sea surface temperature (wet air); Pelagos; pH; pH, standard deviation; Polar; Salinity; Salinity, standard deviation; Sample ID; Single species; Species; Temperature, standard deviation; Temperature, water
    Type: Dataset
    Format: text/tab-separated-values, 5663 data points
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    DATA PANGAEA
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