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  • Life and Medical Sciences  (7)
  • SOCAT; Surface Ocean CO2 Atlas Project  (3)
  • 54PC19941126-track; Algorithm; CT; DATE/TIME; Depth, bathymetric, interpolated/gridded; DEPTH, water; Distance; extracted from GLOBALVIEW-CO2; extracted from the 2-Minute Gridded Global Relief Data (ETOPO2); extracted from the NCEP/NCAR 40-Year Reanalysis Project; extracted from the World Ocean Atlas 2005; Fugacity of carbon dioxide (water) at sea surface temperature (wet air); LATITUDE; LONGITUDE; Partial pressure of carbon dioxide (water) at sea surface temperature (wet air); POS_330_94; Pressure, atmospheric, interpolated; Pressure at equilibration; Prince of Seas; Quality flag; Recomputed after SOCAT (Pfeil et al., 2013); Salinity, interpolated; SOCAT; Surface Ocean CO2 Atlas Project; Temperature, water; Underway cruise track measurements; xCO2 (air), interpolated  (2)
  • 54PC19950412-track; Algorithm; CT; DATE/TIME; Depth, bathymetric, interpolated/gridded; DEPTH, water; Distance; extracted from GLOBALVIEW-CO2; extracted from the 2-Minute Gridded Global Relief Data (ETOPO2); extracted from the NCEP/NCAR 40-Year Reanalysis Project; extracted from the World Ocean Atlas 2005; Fugacity of carbon dioxide (water) at sea surface temperature (wet air); LATITUDE; LONGITUDE; Partial pressure of carbon dioxide (water) at sea surface temperature (wet air); POS_102_95; Pressure, atmospheric, interpolated; Pressure at equilibration; Prince of Seas; Quality flag; Recomputed after SOCAT (Pfeil et al., 2013); Salinity, interpolated; SOCAT; Surface Ocean CO2 Atlas Project; Temperature, water; Underway cruise track measurements; xCO2 (air), interpolated  (2)
Collection
Keywords
Publisher
Years
  • 1
    Electronic Resource
    Electronic Resource
    Transition from maternal to embryonic control in early mammalian development: A comparison of several species (1990)
    New York, NY [u.a.] : Wiley-Blackwell
    Molecular Reproduction and Development 26 (1990), S. 90-100 
    Details
    ISSN: 1040-452X
    Keywords: Life and Medical Sciences ; Cell & Developmental Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology
    Additional Material: 1 Tab.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1002/mrd.1080260113
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  • 2
    Electronic Resource
    Electronic Resource
    The cell biology of blastocyst development (1992)
    New York, NY [u.a.] : Wiley-Blackwell
    Molecular Reproduction and Development 33 (1992), S. 492-504 
    Details
    ISSN: 1040-452X
    Keywords: Preimplantation development ; Compaction ; Cavitation ; Blastocyst ; Na/K-ATPase ; Life and Medical Sciences ; Cell & Developmental Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology
    Notes: Preimplantation development encompasses the “free”-living period of mammalian embryo-genesis, which culminates in the formation of a fluid-filled structure, the blastocyst. Cavitation (blastocyst formation) is accompanied by the expression of a novel set of gene products that contribute directly to the attainment of cell polarity with the trophectoderm, which is both the first epithelium of development and the outer cell layer encircling the inner cell mass of the blastocyst. Several of these gene products have been identified and include the tight junction (ZO-1), Na/K-ATPase (α and β subunits), uvomorulin, gap junction (connexin43), and growth factors such as transforming growth factor-α (TGF-α) and epidermal growth factor (EGF). This review will examine the role(s) of each of these gene products during the onset and progression of blastocyst formation. The trophectodermal tight junctional permeability seal regulates the leakage of blastocoel fluid and also assists in the maintenance of a polarized Na/K-ATPase distribution to the basolateral plasma membrane domain of the mural trophectoderm. The polarized distribution of the Na/K-ATPase plays an integral role in the establishment of a trans-trophectoderm Na+ gradient, which drives the osmotic accumulation of water across the epithelium into the nascent blastocoelic cavity. The cell adhesion provided by uvomorulin is necessary for the establishment of the tight junctional seal, as well as the maintenance of the polarized Na/K-ATPase distribution. Growth factors such as TGF-α and EGF stimulate an increase in the rate of blastocoel expansion, which could, in part, be mediated by secondary messengers that result in an increase in Na/K-ATPase activity. Insight into the mechanism of cavitation has, therefore, directly linked blastocyst formation to trophectoderm cell differentiation, which arises through fundamental cell biological processes that are directly involved in the attainment of epithelial cell polarity. © 1992 Wiley-Liss, Inc.
    Additional Material: 2 Ill.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1002/mrd.1080330417
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  • 3
    Electronic Resource
    Electronic Resource
    Effects of maturation and co-culture treatments on the developmental capacity of early bovine embryos (1991)
    New York, NY [u.a.] : Wiley-Blackwell
    Molecular Reproduction and Development 30 (1991), S. 330-338 
    Details
    ISSN: 1040-452X
    Keywords: Oocyte ; Maturation ; Bovine Embryos ; Oviductal Cells ; Life and Medical Sciences ; Cell & Developmental Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology
    Notes: A total of 901 cumulus-oocyte complexes (COCs) were collected from bovine ovaries obtained at a local abattoir. COCs randomly assigned to Treatment I (n=451), were cultured in TCM-199 + 10% fetal bovine serum (FBS) and hormones, while oocytes in Treatment II (n=450) were cultured in TCM-199 + 20% estrous cow serum (ECS). Assessment of maturation revealed that 91.3% (42/46) of oocytes in Treatment I had reached metaphase II of meiosis, which was greater (P 〈0.05) than the 73.3% (33/45) in Treatment II. Following in vitro fertilization, 203 oocytes from Treatment I were co-cultured on bovine granulosa cells (Treatment IA) while the remaining 202 oocytes were co-cultured on bovine oviductal cells (Treatment IB). Similarly, 203 oocytes from Treatment II were co-cultured on granulosa cells (Treatment IIA) or oviductal cells (Treatment IIB, n = 202). Co-culture was maintained for 8 days. The proportion of cleaved zygotes was higher (P 〈0.05) in Treatment IB (86.6%) compared to Treatments IA (78.8%), IIA (58.1%), and IIB (64.8%). The proportion of cleaved zygotes that progressed beyond the 16-cell stage was also greater (P 〈0.001) in Treatment IB (71.4%) compared to Treatments IA (50.0%), IIA (35.4%) and IIB (55.8%). Treatment IB also produced the highest proportion of blastocysts (P〈0.0001) (41.1%) versus 24.6% (IA), 11.3% (IIA) and 18.3% (IIB). The proportion of day 6 morulae that progressed to form day 8 blastocysts was similar for both co-culture treatments (IA, 70.1%; IB 70.2%; IIA, 51.5%; IIB 50.8%) and varied only between in vitro maturation groups. Results indicate that the combination of in vitro maturation in TCM-99 + 10% FBS and hormones followed by co-culture on oviductal monolayers is a superior system for the production of early bovine embryos.
    Additional Material: 3 Ill.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1002/mrd.1080300407
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  • 4
    Electronic Resource
    Electronic Resource
    Expression of growth factor ligand and receptor genes in the preimplantation bovine embryo (1992)
    New York, NY [u.a.] : Wiley-Blackwell
    Molecular Reproduction and Development 31 (1992), S. 87-95 
    Details
    ISSN: 1040-452X
    Keywords: Mammalian development ; mRNA phenotyping ; RT-PCR ; Life and Medical Sciences ; Cell & Developmental Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology
    Notes: The sensitive technique of mRNA phenotyping with the reverse transcription-polymerase chain reaction was employed to determine the patterns of gene expression for several growth factor ligand and receptor genes during bovine preimplantation development. Several thousand bovine embryos encompassing a developmental series from one-cell zygotes to hatched blastocysts were produced by the application of in vitro maturation, fertilization, and oviductal epithelial cell embryo coculture methods. Transcripts for transforming growth factor (TGF-α) and platelet-derived growth factor (PDGF-A) are detectable in all preimplantation bovine stages as observed in the mouse. Transcripts for TGF-β2 and insulin-like growth factor (IGF-II) and the receptors for PDGF-α, insulin, IGF-I, and IGF-II are also detectable throughout bovine preimplantation development, suggesting that these mRNAs are products of both the maternal and the embryonic genomes in the cow, whereas in the mouse they are present only following the activation of the embryonic genome at the two-cell stage. In contrast to the mouse embryo, IGF-I mRNA was detected within preimplantation bovine embryos. Basic fibroblast growth factor (bFGF) is a maternal message in the bovine embryo, since it is only detectable up until the eight-cell embryo stage. Bovine trophoblast protein (bTP) mRNA was detectable within day 8 bovine blastocysts. As was observed in the mouse, the transcripts for insulin, epidermal growth factor (EGF), or nerve growth factor (NGF) were not detectable in any bovine embryo stage. Analyses of this type should aid the development of a completely defined culture medium for the more efficient production of preimplantation bovine embryos.
    Additional Material: 2 Ill.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1002/mrd.1080310202
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  • 5
    Electronic Resource
    Electronic Resource
    U2 small nuclear RNA localization and expression during bovine preimplantation development (1992)
    New York, NY [u.a.] : Wiley-Blackwell
    Molecular Reproduction and Development 31 (1992), S. 231-240 
    Details
    ISSN: 1040-452X
    Keywords: Maternal mRNA ; mRNA processing ; Mammalian development ; Life and Medical Sciences ; Cell & Developmental Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology
    Notes: This study describes the localization of the U2 small nuclear RNA (snRNA) and the major U snRNA group ribonucleoproteins (snRNPs) during bovine preimplantation development. In vitro maturation, fertilization, and oviductal epithelial cell coculture methods were employed to produce several developmental series totalling over 2,000 preimplantation-stage bovine oocytes and embryos. These oocytes and preimplantation embryos were processed for in situ hybridization, immunofluorescence and Northern blotting methods. The U2 snRNA and the major U group snRNPS were localized initially over the germinal vesicle (GV) of preovulatory oocytes but following GV breakdown were released throughout the ooplasm. They subsequently reassociated with both pronuclei during fertilization. From the two-cell to the blastocyst stages, the U2 snRNA and U snRNPs were localized to the interphase nucleus of each blastomere. The levels of U2 snRNA throughout bovine preimplantation development were determined by probing a Northern blot containing total RNA isolated from the following preimplantation bovine embryo stages: one to two cell, eight to 16 cell, early morula (〉32 cell), and late morula/early blastocysts. The levels of U2 snRNA remained constant between the one-cell and eight-to 16-cell bovine embryo stages but increased 4.4-fold between the eight- to 16-cell stage and the late morula/early blastocyst stages. The results suggest that a maternal pool of snRNAs is maintained in mammalian preimplantation embryos regardless of the duration of maternal control of development.
    Additional Material: 6 Ill.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1002/mrd.1080310402
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  • 6
    Electronic Resource
    Electronic Resource
    Cell polarity and development of the first epithelium (1990)
    New York, NY : Wiley-Blackwell
    BioEssays 12 (1990), S. 67-73 
    Details
    ISSN: 0265-9247
    Keywords: Life and Medical Sciences ; Cell & Developmental Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Medicine
    Notes: In the 4 1/2 to 5 days between fertilization and implantation, the mouse conceptus must gain the abilities to implant and produce an embryo. Each of these is the sole developmental responsibility of one of two cell types forming the blastocyst, trophectoderm and inner cell mass (ICM), respectively. Trophectoderm is a polarized transporting epithelium while the ICM is an aggregate of non-epithelial pluripotent stem cells. These two cell types originate from the division of polar blastomeres when their cleavage furrows parallel their apical surfaces. Blastomeres polarize in response to asymmetric cell-cell contact, and understanding the mechanism of this induction is regarded as the key to understanding the origin of trophectoderm and ICM. Here we propose a model based on transcellular ion current loops for the induction of cell polarity during the development of the first epithelium, trophectoderm.
    Additional Material: 6 Ill.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1002/bies.950120204
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  • 7
    Electronic Resource
    Electronic Resource
    Expression of NA, K-ATpase α and β subunit genes during preimplantation development of the mouse (1990)
    Chichester [u.a.] : Wiley-Blackwell
    Developmental Genetics 11 (1990), S. 41-48 
    Details
    ISSN: 0192-253X
    Keywords: Embryogenesis ; cavitation ; Na ; K-ATPase ; mRNA ; Life and Medical Sciences ; Genetics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology
    Notes: NaK-ATPase is a plasma membrane enzyme that plays a critical role in eutherian blastocoel formation (cavitation) by pumping Na+ into the extracellular space enclosed by the trophectoderm. Previous experiments with the mouse had shown that the α (catalytic) subunit of the enzyme becomes detectable by immunocyto-chemistry in the late morula, just prior to the onset of cavitation. In the present study we have used cDNAs corresponding to three mRNA isoforms of the α subunit and a β subunit to determine which genes are expressed during preimplantation development and to explore the timing of their expression. Of the three α subunit cDNAs tested by Northern blot hybridization with blastocyst RNA, only α1 produced a hybridization signal, recognizing a single mRNA about 4 kb in length. This mRNA is relatively abundant in zygotes but barely detectable by the 2-cell stage and then accumulates steadily thereafter to reach its preimplantation maximum in blastocysts. The β1 cDNA detected mRNA of about 2.6-2.8 kb. This mRNA is present in zygotes but could not be detected in 2-, 4-, or 8- cell stages; it is present at a low level in late morulae and is abundant in blastocysts. The temporal profile of accumulation of β1 mRNA thus matches more closely than does α1 the timing of appearance of the catalytic subunit. This suggests that the β subunit may regulate production of the holoenzyme and hence the timing of cavitation.
    Additional Material: 5 Ill.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1002/dvg.1020110106
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  • 8
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    Underway physical oceanography and carbon dioxide measurements during Prince of Seas cruise POS_330_94 (2016)
    PANGAEA
    In:  School of Environmental Sciences, University of East Anglia
    Details
    Publication Date: 2024-07-03
    Keywords: 54PC19941126-track; Algorithm; CT; DATE/TIME; Depth, bathymetric, interpolated/gridded; DEPTH, water; Distance; extracted from GLOBALVIEW-CO2; extracted from the 2-Minute Gridded Global Relief Data (ETOPO2); extracted from the NCEP/NCAR 40-Year Reanalysis Project; extracted from the World Ocean Atlas 2005; Fugacity of carbon dioxide (water) at sea surface temperature (wet air); LATITUDE; LONGITUDE; Partial pressure of carbon dioxide (water) at sea surface temperature (wet air); POS_330_94; Pressure, atmospheric, interpolated; Pressure at equilibration; Prince of Seas; Quality flag; Recomputed after SOCAT (Pfeil et al., 2013); Salinity, interpolated; SOCAT; Surface Ocean CO2 Atlas Project; Temperature, water; Underway cruise track measurements; xCO2 (air), interpolated
    Type: Dataset
    Format: text/tab-separated-values, 11693 data points
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  • 9
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    Surface Ocean CO2 Atlas (SOCAT) V2 (2014)
    PANGAEA
    In:  Supplement to: Bakker, Dorothee C E; Pfeil, Benjamin; Smith, Karl; Hankin, Steven; Olsen, Are; Alin, Simone R; Cosca, Catherine E; Harasawa, Sumiko; Kozyr, Alexander; Nojiri, Yukihiro; O'Brien, Kevin M; Schuster, Ute; Telszewski, Maciej; Tilbrook, Bronte; Wada, Chisato; Akl, John; Barbero, Leticia; Bates, Nicolas R; Boutin, Jacqueline; Bozec, Yann; Cai, Wei-Jun; Castle, Robert D; Chavez, Francisco P; Chen, Lei; Chierici, Melissa; Currie, Kim I; de Baar, Hein J W; Evans, Wiley; Feely, Richard A; Fransson, Agneta; Gao, Zhongyong; Hales, Burke; Hardman-Mountford, Nicolas J; Hoppema, Mario; Huang, Wei-Jen; Hunt, Christopher W; Huss, Betty; Ichikawa, Tadafumi; Johannessen, Truls; Jones, Elizabeth M; Jones, Steve D; Jutterstrøm, Sara; Kitidis, Vassilis; Körtzinger, Arne; Landschützer, Peter; Lauvset, Siv K; Lefèvre, Nathalie; Manke, Ansley; Mathis, Jeremy T; Merlivat, Liliane; Metzl, Nicolas; Murata, Akihiko; Newberger, Timothy; Omar, Abdirahman M; Ono, Tsuneo; Park, Geun-Ha; Paterson, Kristina; Pierrot, Denis; Ríos, Aida F; Sabine, Christopher L; Saito, Shu; Salisbury, Joe; Sarma, Vedula V S S; Schlitzer, Reiner; Sieger, Rainer; Skjelvan, Ingunn; Steinhoff, Tobias; Sullivan, Kevin; Sun, Heng; Sutton, Adrienne; Suzuki, Toru; Sweeney, Colm; Takahashi, Taro; Tjiputra, Jerry; Tsurushima, Nobuo; van Heuven, Steven; Vandemark, Douglas C; Vlahos, Penny; Wallace, Douglas WR; Wanninkhof, Rik; Watson, Andrew J (2014): An update to the Surface Ocean CO2 Atlas (SOCAT version 2). Earth System Science Data, 6(1), 69-90, https://doi.org/10.5194/essd-6-69-2014
    Details
    Publication Date: 2024-07-03
    Description: The Surface Ocean CO2 Atlas (SOCAT), an activity of the international marine carbon research community, provides access to synthesis and gridded fCO2 (fugacity of carbon dioxide) products for the surface oceans. Version 2 of SOCAT is an update of the previous release (version 1) with more data (increased from 6.3 million to 10.1 million surface water fCO2 values) and extended data coverage (from 1968-2007 to 1968-2011). The quality control criteria, while identical in both versions, have been applied more strictly in version 2 than in version 1. The SOCAT website (http://www.socat.info/) has links to quality control comments, metadata, individual data set files, and synthesis and gridded data products. Interactive online tools allow visitors to explore the richness of the data. Applications of SOCAT include process studies, quantification of the ocean carbon sink and its spatial, seasonal, year-to-year and longerterm variation, as well as initialisation or validation of ocean carbon models and coupled climate-carbon models.
    Keywords: SOCAT; Surface Ocean CO2 Atlas Project
    Type: Dataset
    Format: application/zip, 2669 datasets
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  • 10
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    Surface Ocean CO2 Atlas (SOCAT) V3 (2016)
    PANGAEA
    In:  Supplement to: Bakker, Dorothee C E; Pfeil, Benjamin; Landa, Camilla S; Metzl, Nicolas; O'Brien, Kevin M; Olsen, Are; Smith, Karl; Cosca, Catherine E; Harasawa, Sumiko; Jones, Steve D; Nakaoka, Shin-Ichiro; Nojiri, Yukihiro; Schuster, Ute; Steinhoff, Tobias; Sweeney, Colm; Takahashi, Taro; Tilbrook, Bronte; Wada, Chisato; Wanninkhof, Rik; Alin, Simone R; Balestrini, Carlos F; Barbero, Leticia; Bates, Nicolas R; Bianchi, Alejandro A; Bonou, Frédéric Kpédonou; Boutin, Jacqueline; Bozec, Yann; Burger, Eugene; Cai, Wei-Jun; Castle, Robert D; Chen, Liqi; Chierici, Melissa; Currie, Kim I; Evans, Wiley; Featherstone, Charles; Feely, Richard A; Fransson, Agneta; Goyet, Catherine; Greenwood, Naomi; Gregor, Luke; Hankin, Steven; Hardman-Mountford, Nicolas J; Harlay, Jérôme; Hauck, Judith; Hoppema, Mario; Humphreys, Matthew P; Hunt, Christopher W; Huss, Betty; Ibánhez, J Severino P; Johannessen, Truls; Keeling, Ralph F; Kitidis, Vassilis; Körtzinger, Arne; Kozyr, Alexander; Krasakopoulou, Evangelia; Kuwata, Akira; Landschützer, Peter; Lauvset, Siv K; Lefèvre, Nathalie; Lo Monaco, Claire; Manke, Ansley; Mathis, Jeremy T; Merlivat, Liliane; Millero, Frank J; Monteiro, Pedro M S; Munro, David R; Murata, Akihiko; Newberger, Timothy; Omar, Abdirahman M; Ono, Tsuneo; Paterson, Kristina; Pearce, David J; Pierrot, Denis; Robbins, Lisa L; Saito, Shu; Salisbury, Joe; Schlitzer, Reiner; Schneider, Bernd; Schweitzer, Roland; Sieger, Rainer; Skjelvan, Ingunn; Sullivan, Kevin; Sutherland, Stewart C; Sutton, Adrienne; Tadokoro, Kazuaki; Telszewski, Maciej; Tuma, Matthias; van Heuven, Steven; Vandemark, Douglas C; Ward, Brian; Watson, Andrew J; Xu, Suqing (2016): A multi-decade record of high-quality fCO2 data in version 3 of the Surface Ocean CO2 Atlas (SOCAT). Earth System Science Data, 8(2), 383-413, https://doi.org/10.5194/essd-8-383-2016
    Details
    Publication Date: 2024-07-03
    Description: The Surface Ocean CO2 Atlas (SOCAT) is a synthesis of quality-controlled fCO2 (fugacity of carbon dioxide) values for the global surface oceans and coastal seas with regular updates. Version 3 of SOCAT has 14.5 million fCO2 values from 3646 data sets covering the years 1957 to 2014. This latest version has an additional 4.4 million fCO2 values relative to version 2 and extends the record from 2011 to 2014. Version 3 also significantly increases the data availability for 2005 to 2013. SOCAT has an average of approximately 1.2 million surface water fCO2 values per year for the years 2006 to 2012. Quality and documentation of the data has improved. A new feature is the data set quality control (QC) flag of E for data from alternative sensors and platforms. The accuracy of surface water fCO2 has been defined for all data set QC flags. Automated range checking has been carried out for all data sets during their upload into SOCAT. The upgrade of the interactive Data Set Viewer allows better interrogation of the SOCAT data collection and rapid creation of high-quality figures for scientific presentations. Automated data upload has been launched for version 4 and will enable more frequent SOCAT releases in the future. High-profile scientific applications of SOCAT include quantification of the ocean sink for atmospheric carbon dioxide and its long-term variation, detection of ocean acidification, as well as evaluation of coupled-climate and ocean-only biogeochemical models. Users of SOCAT data products are urged to acknowledge the contribution of data providers, as stated in the SOCAT Fair Data Use Statement. This living data publication documents changes in the methods and data sets used in this new version of the SOCAT data collection compared with previous publications of this data collection (Pfeil et al., 2013; Sabine et al., 2013; Bakker et al., 2014).
    Keywords: SOCAT; Surface Ocean CO2 Atlas Project
    Type: Dataset
    Format: application/zip, 3657 datasets
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