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  • Histopathology  (4)
  • 16S rRNA  (2)
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  • 1
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    Unknown
    Monitoring of fresh water fish farms in north of khouzestan province for mortality emphasis on silver carp (2021)
    Iranian Fisheries Science Research Institute | Tehran, Iran
    In:  http://aquaticcommons.org/id/eprint/25647 | 18721 | 2018-10-08 08:31:58 | 25647 | Iranian Fisheries Science Research Institute
    Details
    Publication Date: 2021-07-16
    Description: Carp fishes culture is one of the most important subsector fisheries industry in Khouzestan province. Every year in summer high mortality occurred in carp fishes farms specially in silver carp of north Khouzestan province. Inspection of silver carp for identification microorganisms agents (Bacteria, Fungi, Parasite and virus: SVC,KHV), determine total plate count, examination physic chemical factors of farms water, histopathology, identification planktons, the main objectives of this study, which was held in 2012. 180 silver carp from 5 farms (10 ponds) with high mortality in years ago were collected in north Khouzestan province and then differents parts of fish body including: intestine, gills, body surface, eyes and liver were examined. Physico chemical parameters and plankton sampled monthly. Physico chemical parameters of water were measured all over culture period for 960 times as follows: Do(4.45-8.5 ppm), BOD5(1.1-9.25 ppm), temp(19-33c), pH(6.82-8.6), total hardness(348-10053), turbidity(5-56 FTU), Amonia(0.001- 0.06 ppm) and co2( 0.88-13.2). From a total 180 fish examined, 136 (75%) showed unknown algae infestation and 126 (70%) showed parasitic (Dactylogyrus, Gyrodactylus and metacercaria Diplostomum). The results of biotic parameters in farms showed that cyanophycae (Cylindropermopsis, Merismopedia and Nitzeshia) were the most group of phytoplanktons. Histopathological studies have shown necrosis in tobules kidney, degeneration hepatocyte and hyperplasia in gill cells and also results demonstrated the mean of total plate count (0-376 CFU/ml103). 60 samples with sighn severe hemorrhagic on surface body were collected for virology studies by PCR procedure (IQ2000 kit) and have shown which 3 sample suspected to KHV but SVC was not identified.
    Keywords: Aquaculture ; Iran ; Khouzestan Province ; Silver Carp ; Water physic chemical factor ; Microorganisms ; Histopathology ; Fresh water ; Mortality ; Fisheries ; Bacteria ; Fungi ; Parasite ; Virus ; Planktons ; Dactylogyrus ; Gyrodactylus ; Cyanophycae ; Cylindropermopsis ; Nitzeshia ; PCR
    Repository Name: AquaDocs
    Type: monograph
    Format: application/pdf
    Format: application/pdf
    Format: 110
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  • 2
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    Unknown
    Monitoring infectious agents in L.vannamei farms in choebdeh-Abadan (2021)
    Iranian Fisheries Science Research Institute | Tehran, Iran
    In:  http://aquaticcommons.org/id/eprint/25262 | 18721 | 2018-09-07 07:28:07 | 25262 | Iranian Fisheries Science Research Institute
    Details
    Publication Date: 2021-07-16
    Description: The introduction of L. vannamei to Iran from Hawaii was initiated when high mortality occurred in shrimp farms of Abadan in 2002 than in Bushehr during summer of 2004. Inspection of L. vannamei for infectious agents (Bacteria , virus , fungi and parasite ) , determine total plate count and total vibrio in Bahmanshir Rivers, shrimps and farms water , examination physicochemical factors of farms water , Identification of carriers of wssv in wild shrimp and crabs , the main objectives of this study , which was held in 2007 . 540 shrimp samples (pl12 pl15) and subadults were collected from different shrimp farms in khouzestan province and then check for identity bacteria, fungi and parasite. Also 280 samples of L. vannamei , wild shrimps ( Metapenaeus af inis , Exopalaemon styliferus ) and crabs (Grapsus sp .and Sesarma sp. ) were Collected from Bahmanshir river for virology studies by PCR procedure (Iq2000 kit WSSV , IHHNV , TSV ) . 120 samples of L. vannamei for histopathology had been collected randomly and preserved in Davidson’s fixation and then transferred to 75% ethyl alcohol for storage. (Hepatopancreas gills). Physicochemical parameters of water in culture ponds comprising of pH DO, BOD, NO_3, NO_2, salinity. Total. Hardness and NH3 were measured all over culture period for 340 times. Finally it has been detected 10 genus and species of bacteria consisting of V . alginolyticus, V. parahaemolyticus, V. proteolyticus , plesiomonas shigelloides ; 6 genus and species of fungi specially Aspergilus niger , Asp.fumigatus and Asp.flavus and two genus of parasites vorticella sp. And Zoothamnium sp. were isolated. Crab (Sesarma sp.) were tested by using Iq2000 diagnostic kit for WSSV that positive for WSSV. There was a positive result (three viruses TSV, IHHNV and WSSV) for postlarvae and subadults of L.vannamei by using Iq2000 kit and IFRO kit (Internal kit). Histopathological studies have shown inclusion bodies of TSV, WSSV, IHHNV, MBV and HPV in various tissues. Results demonstrated the mean of vibrio count (0. 01×103 - 1.96 ×103) and tolal plate count (0 .21 ×103 - 14.25 ×10 3). physicochemical parameters of water were measured as follows : salinity (12.3 22.5 ppt ).BOD5 ( 1.98 10.21 ppm ) , DO (3.17 11.25 ppm ) , NH3(0.02 3.45 ppm ) and temperature (20 31. 5 c) . Keywords: L.vannamei, bacteria, virus, fungi, parasite Histo pathology - physicochemical parameters of water- Abadan khouzestan province.
    Keywords: Aquaculture ; Iran ; Khouzestan Province ; Abadan ; Choebdeh ; Bahmanshir River ; L.Vannamei ; Bacteria ; Virus ; Fungi ; Parasite ; Histopathology ; Physicochemical parameters of water ; Mortality ; Shrimp ; Metapenaeus affinis ; Exopalaemon styliferus ; Grapsus sp. ; Sesarma sp. ; Aspergilus niger ; Asp. Fumigatus ; Asp. Flavus ; Temperature
    Repository Name: AquaDocs
    Type: monograph
    Format: application/pdf
    Format: application/pdf
    Format: 78
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  • 3
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    Unknown
    Fish gene bank of the Persian Gulf and Oman Sea (2021)
    Iranian Fisheries Science Research Institute | Tehran, Iran
    In:  http://aquaticcommons.org/id/eprint/25779 | 18721 | 2018-10-13 08:34:12 | 25779 | Iranian Fisheries Science Research Institute
    Details
    Publication Date: 2021-07-16
    Description: Genetic studies and gene banks preparation can identify guidelines for improving diversity and population structure and estimation, poaching and also the amount of cross breeding and provide genetic classification. In this study, sampling was performed from the important studied species habitats areas for the species such as: Dasyatis bennetti، Netuma thalassina, Netuma bilineata Carcharhinus leucas، Choerodon robustus، Pseudorhombus pentophthalmus ،Pseudorhombus arsius Thunnus tonggol ،Euthynnus affinis and Trichiurus lepturus. Total DNA extraction was performed using phenol - chloroform method which is the most common method for DNA extraction in order to achieve high quality of DNA was performed in the preparation of gene bank in this study. After relevant studies on this gene primers were designed and in use. After editing the sequences, nucleotide BLAST (Basic Local Alignment Search Tool) was performed using NCBI blast main page. The sequences obtained from each sample were aligned and corrected from any ambiguities and assembled using Bio edit program .Trees were generated using maximum parsimony (MP), a character-based algorithm and neighbor joining (NJ) a distance-based algorithm for phenetic analysis. The distance matrix option of MEGA4 was used to calculate genetic distance according to the Kimura 2-parameter model of sequence evolution. Based on the results obtained, the optical density of 260 to 280 nm in the samples was recorded between 1/8 - 2, indicating good quality DNA samples. Optimized PCR reaction to 16SrRNA gene amplification using the gradient between 48 - 60° C showed that the most suitable criteria for binding primers, 54 to 58 Celsius degrees respectively. The project objectives including the identification of the genetic structure of the species, and draw the phylogenetic trees using two genes 16SrRNA, making identification and registration of specified computer storage and regulate the structure and management of mentioned species by focus on genetic resources 10 species of majour commercial and noncommercial fishes in the Persia Gulf and Oman Sea through the creation of an integrated network of aquatic genetic resources in the region to try to identify genetic resources and aquatic gene bank. This type of analysis could be considered as an important tool to be used in broodstock selection in breeding programs. Also identify the species of fish named as Pseudorhombus pentophthalmus with a new haplotype and genetic differences 7% in compare to the samples recorded in the World gene Bank can considered as a major achievements of this research.
    Keywords: Biology ; Iran ; Persian Gulf ; Gene Bank ; mtDNA ; Fish ; Marine ; 16S rRNA ; Dasyatis bennetti ; Netuma thalassina ; Netuma bilineata ; Carcharhinus leucas ; Choerodon robustus ; Pseudorhombus pentophthalmus ; Pseudorhombus arsius ; Thunnus tonggol ; Euthynnus affinis ; Trichiurus lepturus ; Species
    Repository Name: AquaDocs
    Type: monograph
    Format: application/pdf
    Format: application/pdf
    Format: 66
    Location Call Number Expected Availability
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  • 4
    facet.materialart.
    Unknown
    Fish gene bank of the Persian Gulf and Oman Sea (2018)
    Iranian Fisheries Science Research Institute | Tehran, Iran
    Details
    Publication Date: 2021-05-19
    Description: Genetic studies and gene banks preparation can identify guidelines for improving diversity and population structure and estimation, poaching and also the amount of cross breeding and provide genetic classification. In this study, sampling was performed from the important studied species habitats areas for the species such as: Dasyatis bennetti ، Netuma thalassina, Netuma bilineata Carcharhinus leucas ،Choerodon robustus ، Pseudorhombus pentophthalmus ،Pseudorhombus arsius Thunnus tonggol ،Euthynnus affinis and Trichiurus lepturus. Total DNA extraction was performed using phenol - chloroform method which is the most common method for DNA extraction in order to achieve high quality of DNA was performed in the preparation of gene bank in this study. After relevant studies on this gene primers were designed and in use. After editing the sequences, nucleotide BLAST (Basic Local Alignment Search Tool) was performed using NCBI blast main page.The sequences obtained from each sample were aligned and corrected from any ambiguities and assembled using Bio edit program .Trees were generated using maximum parsimony (MP), a character-based algorithm and neighbor joining (NJ) a distance-based algorithm for phenetic analysis. The distance matrix option of MEGA4 was used to calculate genetic distance according to the Kimura 2-parameter model of sequence evolution. Based on the results obtained, the optical density of 260 to 280 nm in the samples was recorded between 1/8 - 2, indicating good quality DNA samples. Optimized PCR reaction to 16SrRNA gene amplification using the gradient between 48 - 60° C showed that the most suitable criteria for binding primers, 54 to 58 Celsius degrees respectively.The project objectives including the identification of the genetic structure of the species, and draw the phylogenetic trees using two genes 16SrRNA, making identification and registration of specified computer storage and regulate the structure and management of mentioned species by focus on genetic resources 10 species of majour commercial and noncommercial fishes in the Persia Gulf and Oman Sea through the creation of an integrated network of aquatic genetic resources in the region to try to identify genetic resources and aquatic gene bank.This type of analysis could be considered as an important tool to be used in broodstock selection in breeding programs. Also identify the species of fish named as Pseudorhombus pentophthalmus with a new haplotype and genetic differences 7% in compare to the samples recorded in the World gene Bank can considered as a major achievements of this research.
    Description: Iranian Fisheries Science Research Institute
    Description: Published
    Keywords: Gene Bank ; mtDNA ; Fish ; Marine ; 16S rRNA ; Dasyatis bennetti ; Netuma thalassina ; Netuma bilineata ; Carcharhinus leucas ; Choerodon robustus ; Pseudorhombus pentophthalmus ; Pseudorhombus arsius ; Thunnus tonggol ; Euthynnus affinis ; Trichiurus lepturus ; Species
    Repository Name: AquaDocs
    Type: Report , Refereed
    Format: 66pp.
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  • 5
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    Unknown
    Monitoring of fresh water fish farms in north of khouzestan province for mortality emphasis on silver carp (2018)
    Iranian Fisheries Science Research Institute | Tehran, Iran
    Details
    Publication Date: 2021-05-19
    Description: Carp fishes culture is one of the most important subsector fisheries industry in Khouzestan province. Every year in summer high mortality occurred in carp fishes farms specially in silver carp of north Khouzestan province. Inspection of silver carp for identification microorganisms agents (Bacteria, Fungi, Parasite and virus: SVC,KHV), determine total plate count, examination physic chemical factors of farms water, histopathology, identification planktons, the main objectives of this study, which was held in 2012. 180 silver carp from 5 farms (10 ponds) with high mortality in years ago were collected in north Khouzestan province and then differents parts of fish body including: intestine, gills, body surface, eyes and liver were examined. Physico chemical parameters and plankton sampled monthly. Physico chemical parameters of water were measured all over culture period for 960 times as follows: Do(4.45-8.5 ppm), BOD5(1.1-9.25 ppm), temp(19-33•c), pH(6.82-8.6), total hardness(348-10053), turbidity(5-56 FTU), Amonia(0.001- 0.06 ppm) and co2( 0.88-13.2). From a total 180 fish examined, 136 (75%) showed unknown algae infestation and 126 (70%) showed parasitic (Dactylogyrus, Gyrodactylus and metacercaria Diplostomum). The results of biotic parameters in farms showed that cyanophycae (Cylindropermopsis, Merismopedia and Nitzeshia) were the most group of phytoplanktons. Histopathological studies have shown necrosis in tobules kidney, degeneration hepatocyte and hyperplasia in gill cells and also results demonstrated the mean of total plate count (0-376 CFU/ml103). 60 samples with sighn severe hemorrhagic on surface body were collected for virology studies by PCR procedure (IQ2000 kit) and have shown which 3 sample suspected to KHV but SVC was not identified.
    Description: Iranian Fisheries Science Research Institute
    Description: Published
    Keywords: Silver Carp ; Water physic chemical factor ; Microorganisms ; Histopathology ; Fresh water ; Mortality ; Fisheries ; Bacteria ; Fungi ; Parasite ; Virus ; Planktons ; Dactylogyrus ; Gyrodactylus ; Cyanophycae ; Cylindropermopsis ; Nitzeshia ; PCR
    Repository Name: AquaDocs
    Type: Report , Refereed
    Format: 110pp.
    Location Call Number Expected Availability
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  • 6
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    Unknown
    Monitoring infectious agents in L.vannamei farms in choebdeh-Abadan (2018)
    Iranian Fisheries Science Research Institute | Tehran, Iran
    Details
    Publication Date: 2021-05-19
    Description: The introduction of L. vannamei to Iran from Hawaii was initiated when high mortality occurred in shrimp farms of Abadan in 2002 then in Bushehr during summer of 2004. Inspection of L. vannamei for infectious agents (Bacteria , virus , fungi and parasite ) , determine total plate count and total vibrio in Bahmanshir Rivers, shrimps and farms water , examination physicochemical factors of farms water , Identification of carriers of wssv in wild shrimp and crabs , the main objectives of this study , which was held in 2007 . 540 shrimp samples (pl12 pl15) and subadults were collected from different shrimp farms in khouzestan province and then check for identity bacteria, fungi and parasite. Also 280 samples of L. vannamei , wild shrimps ( Metapenaeus af inis , Exopalaemon styliferus ) and crabs (Grapsus sp .and Sesarma sp. ) were Collected from Bahmanshir river for virology studies by PCR procedure (Iq2000 kit WSSV , IHHNV , TSV ) . 120 samples of L. vannamei for histopathology had been collected randomly and preserved in Davidson’s fixation and then transferred to 75% ethyl alcohol for storage. (Hepatopancreas gills). Physicochemical parameters of water in culture ponds comprising of pH DO, BOD, NO3, NO2, salinity. Total. Hardness and NH3 were measured all over culture period for 340 times. Finally it has been detected 10 genus and species of bacteria consisting of V . alginolyticus, V. parahaemolyticus, V. proteolyticus , plesiomonas shigelloides ; 6 genus and species of fungi specially Aspergilus niger , Asp.fumigatus and Asp.flavus and two genus of parasites vorticella sp. And Zoothamnium sp. were isolated. Crab (Sesarma sp.) were tested by using Iq2000 diagnostic kit for WSSV that positive for WSSV. There was a positive result (three viruses TSV, IHHNV and WSSV) for postlarvae and subadults of L.vannamei by using Iq2000 kit and IFRO kit (Internal kit). Histopathological studies have shown inclusion bodies of TSV, WSSV, IHHNV, MBV and HPV in various tissues. Results demonstrated the mean of vibrio count (0. 01×103 - 1.96 ×103) and tolal plate count (0 .21 ×103 - 14.25 ×10 3). physicochemical parameters of water were measured as follows : salinity (12.3 22.5 ppt ).BOD5 ( 1.98 10.21 ppm ) , DO (3.17 11.25 ppm ) , NH3(0.02 3.45 ppm ) and temperature (20 31. 5 c) . Keywords: L.vannamei, bacteria, virus, fungi, parasite Histo pathology - physicochemical parameters of water- Abadan khouzestan province.
    Description: Iranian Fisheries Science Research Institute
    Description: Published
    Keywords: Virology ; Histopathology ; L.Vannamei ; Bacteria ; Virus ; Fungi ; Parasite ; Histopathology ; Physicochemical parameters of water ; Mortality ; Shrimp ; Metapenaeus affinis ; Exopalaemon styliferus ; Grapsus sp. ; Sesarma sp. ; Aspergilus niger ; Asp. Fumigatus ; Asp. Flavus ; Temperature
    Repository Name: AquaDocs
    Type: Report , Refereed
    Format: 78pp.
    Location Call Number Expected Availability
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