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  • Antisense RNA  (2)
  • 127-794A; 127-794B; 127-795A; 127-795B; 127-796A; 127-797B; DRILL; Drilling/drill rig; Japan Sea; Joides Resolution; Leg127; Ocean Drilling Program; ODP  (1)
  • 127-794A; 127-794B; Calculated; Cerium; Cerium anomaly; DEPTH, sediment/rock; DRILL; Drilling/drill rig; DSDP/ODP/IODP sample designation; Dysprosium; Elevation of event; Erbium; Europium; Europium anomaly; Event label; Gadolinium; Holmium; Inductively coupled plasma - mass spectrometry (ICP-MS); Japan Sea; Joides Resolution; Lanthanum; Lanthanum/Ytterbium ratio; Latitude of event; Leg127; Longitude of event; Lutetium; Neodymium; Ocean Drilling Program; ODP; Praseodymium; Rare-earth elements; Samarium; Sample code/label; Terbium; Thulium; Ytterbium  (1)
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  • 1
    Publication Date: 2024-01-09
    Keywords: 127-794A; 127-794B; Calculated; Cerium; Cerium anomaly; DEPTH, sediment/rock; DRILL; Drilling/drill rig; DSDP/ODP/IODP sample designation; Dysprosium; Elevation of event; Erbium; Europium; Europium anomaly; Event label; Gadolinium; Holmium; Inductively coupled plasma - mass spectrometry (ICP-MS); Japan Sea; Joides Resolution; Lanthanum; Lanthanum/Ytterbium ratio; Latitude of event; Leg127; Longitude of event; Lutetium; Neodymium; Ocean Drilling Program; ODP; Praseodymium; Rare-earth elements; Samarium; Sample code/label; Terbium; Thulium; Ytterbium
    Type: Dataset
    Format: text/tab-separated-values, 280 data points
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  • 2
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    PANGAEA
    In:  Supplement to: Murray, Richard W; Buchholtz ten Brink, Marilyn R; Brumsack, Hans-Jürgen; Gerlach, David C; Russ, III, Price G (1992): Rare earth, major, and trace element composition of Leg 127 sediments. In: Pisciotto, KA; Ingle, JCJr.; von Breymann, MT; Barron, J; et al. (eds.), Proceedings of the Ocean Drilling Program, Scientific Results, College Station, TX (Ocean Drilling Program), 127/128(1), 677-695, https://doi.org/10.2973/odp.proc.sr.127128-1.176.1992
    Publication Date: 2024-01-09
    Description: The relative effects of paleoceanographic and paleogeographic variations, sediment lithology, and diagenetic processes on the final preserved chemistry of Japan Sea sediments are evaluated by investigating the rare earth element (REE), major element, and trace element concentrations in 59 squeeze-cake whole-round and 27 physical-property sample residues from Sites 794, 795, and 797, cored during ODP Leg 127. The most important variation in sedimentary chemical composition is the increase in SiO2 concentration through the Pliocene diatomaceous sequences, which dilutes most other major and trace element components by various degrees. This biogenic input is largest at Site 794 (Yamato Basin), moderately developed at Site 797 (Yamato Basin), and of only minor importance at Site 795 (Japan Basin), potentially reflecting basinal contrasts in productivity with the Yamato Basin recording greater biogenic input than the Japan Basin and with the easternmost sequence of Site 794 lying beneath the most productive waters. There are few systematic changes in solid-phase chemistry resulting from the opal-A/opal-CT or opal-CT/quartz silica phase transformations. Most major and trace element concentrations are controlled by the aluminosilicate fraction of the sediment, although the effects of diagenetic silica phases and manganese carbonates are of localized importance. REE total abundances (Sum REE) in the Japan Sea are strongly dependent upon the paleoceanographic position of a given site with respect to terrigenous and biogenic sources. REE concentrations at Site 794 overall correspond well to aluminosilicate chemical indices and are strongly diluted by SiO2 within the upper Miocene-Pliocene diatomaceous sequence. Eu/Eu* values at Site 794 reach a maximum through the diatomaceous interval as well, most likely suggesting an association of Eu/Eu* with the siliceous component, or reflecting slight incorporation of a detrital feldspar phase. SumREE at Site 795 also is affiliated strongly with aluminosilicate phases and yet is diluted only slightly by siliceous input. At Site 797, SumREE is not as clearly associated with the aluminosilicate fraction, is correlated moderately to siliceous input, and may be sporadically influenced by detrital heavy minerals originating from the nearby rifted continental fragment composing the Yamato Rise. Ce/Ce* profiles at all three sites increase essentially monotonically with depth and record progressive diagenetic LREE fractionation. The observed Ce/Ce* increases are not responding to changes in the paleoceanographic oxygenation state of the overlying water, as there is no independent evidence to suggest the proper oceanographic conditions. Ce/Ce* correlates slightly better with depth than with age at the two Yamato Basin sites. The downhole increase in Ce/Ce* at Sites 794 and 797 is a passive response to the diagenetic transfer of LREE (except Ce) from sediment to interstitial water. At Site 795, the overall lack of correlation between Ce/Ce* and Lan/Ybn suggests that other processes mask the diagenetic behavior of all LREEs. First-order calculations of the Ce budget in Japan Sea waters and sediment indicate that ~20% of the excess Ce adsorbed by settling particles is recycled within the water column and that an additional ~38% is recycled at or near the seafloor. Thus, because the remaining excess Ce is only ~10% of the total Ce, there is not a large source of Ce to the deeply buried sediment, further suggesting that the downhole increase in Ce/Ce* is a passive response to diagenetic behavior of the other LREEs. The REE chemistry of Japan Sea sediment therefore predicts successive downhole addition of LREEs to deeply buried interstitial waters.
    Keywords: 127-794A; 127-794B; 127-795A; 127-795B; 127-796A; 127-797B; DRILL; Drilling/drill rig; Japan Sea; Joides Resolution; Leg127; Ocean Drilling Program; ODP
    Type: Dataset
    Format: application/zip, 2 datasets
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  • 3
    ISSN: 1432-2048
    Keywords: Antisense RNA ; Carbon dioxide assimilation ; Carbonic anhydrase ; Nicotiana (transgenic plants)
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract As an approach to understanding the physiological role of chloroplast carbonic anhydrase (CA), this study reports on the production and preliminary physiological characterisation of transgenic tobacco (Nicotiana tabacum L.) plants where chloroplast CA levels have been specifically suppressed with an antisense construct directed against chloroplast CA mRNA. Primary transformants with CA levels as low as 2% of wild-type levels were recovered, together with intermediate plants with CA activities of about 20–50% of wild-type levels. Plants with even the lowest CA levels were not morphologically distinct from the wild-type plants. Segregation analysis of the low-CA character in plants grown from T1 selfed seed indicated that at least one of the low-CA plants appears to have two active inserts and that at least two of the intermediate-CA plants have one active insert. Analysis of CO2 gas exchange of a group of low-CA plants with around 2% levels of CA indicated that this large reduction in chloroplastic CA did not appear to cause a measurable alteration in net CO2 fixation at 350 μbar CO2 and an irradiance of 1000 μmol quanta·m−2·s−1. In addition, no significant differences in Rubisco activity, chlorophyll content, dry weight per unit leaf area, stomatal conductance or the ratio of intercellular to ambient CO2 partial pressure could be detected. However, the carbon isotope compositions of leaf dry matter were significantly lower (0.85%o) for low-CA plants than for wildtype plants. This corresponds to a 15-μbar reduction in the CO2 partial pressure at the sites of carboxylation. The difference, which was confirmed by concurrent measurement of discrimination with gas exchange, would reduce the CO2 assimilation rate by 4.4%, a difference that could not be readily determined by gas-exchange techniques given the inherent variability found in tobacco. A 98% reduction in CA activity dramatically reduced the 18O discrimination in CO2 passing over the leaf, consistent with a marked reduction in the ratio of hydrations to carboxylations. We conclude that a reduction in chloroplastic CA activity of two orders of magnitude does not produce a major limitation on photosynthesis at atmospheric CO2 levels, but that normal activities of the enzyme appear to play a role in facilitated transfer of CO2 within the chloroplast, producing a marginal improvement in the efficiency of photosynthesis in C3 plants.
    Type of Medium: Electronic Resource
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  • 4
    ISSN: 1432-2048
    Keywords: Antisense RNA ; Glyceraldehyde-3-phos-phate dehydrogenase ; Metabolite pools Nicotiana(transgenic plants) ; Photosynthesis ; Stomate
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract The reduction of 3-phosphoglycerate (PGA) to triose phosphate is a key step in photosynthesis linking the photochemical events of the thylakoid membranes with the carbon metabolism of the photosynthetic carbon-reduction (PCR) cycle in the stroma. Glyceraldehyde-3-phosphate dehydrogenase: NADP oxidoreductase (GAPDH) is one of the two chloroplast enzymes which catalyse this reversible conversion. We report on the engineering of an antisense RNA construct directed against the tobacco (Nicotiana tabacum L.) chloroplastlocated GAPDH (A subunit). The construct was integrated into the tobacco genome by Agrobacterium-mediated transformation of leaf discs. Of the resulting transformants, five plants were recovered with reduced GAPDH activities ranging from 11 to 24% of wild-type (WT) activities. Segregation analysis of the kanamycin-resistance character in self-pollinated T1 seed from each of the five transformants revealed that one plant (GAP-R) had two active DNA inserts and the others had one insert. T1 progeny from GAP-R was used to generate plants with GAPDH activities ranging from WT levels to around 7% of WT levels. These were used to study the effect of variable GAPDH activities on metabolite pools for ribulose1,5-bisphosphate (RuBP) and PGA, and the accompanying effects on the rate of CO2 assimilation and other gasexchange parameters. The RuBP pool size was linearly related to GAPDH activity once GAPDH activity dropped below the range for WT plants, but the rate of CO2 assimilation was not affected until RuBP levels dropped to 30–40% of WT levels. That is, the CO2 assimilation rate fell when RuBP per ribulose-1,5-biphosphate carboxylase-oxygenase (Rubisco) site fell below 2 mol·(mol site)−1 while the ratio for WT plants was 4–5 mol·m(mol site)−1. Leaf conductance was not reduced in leaves with reduced GAPDH activities, resulting in an increase in the ratio of intercellular to ambient CO2 partial pressure. Conductance in plants with reduced GAPDH activities was still sensitive to CO2 and showed a normal decline with increases in CO2 partial pressure. Although PGA levels did not fluctuate greatly, the effect of reduced GAPDH activity on RuBP-pool size and assimilation rate can be interpreted as being due to a blockage in the regeneration of RuBP. Concomitant gas-ex change and chlorophyll a fluorescence measurements indicated that photosynthesis changed from being Rubisco-limited to being RuBP-regeneration-limited at a lower CO2 partial pressure in the antisense plants than in WT plants. Photosynthetic electron transport was down-regulated by the build-up of a large proton gradient and the electron-transport chain did not become over-reduced due to a shortage of NADP. Plants with severely reduced GAPDH activity were not photoinhibited despite the continuous presence of a large thylakoid proton gradient in the light. Along with plant size, Rubisco activity, leaf soluble protein and chlorophyll content were reduced in plants with the lowest GAPDH activities. We conclude that chloroplastic GAPDH activity does not appear to limit steady-state photosynthetic CO2 assimilation at ambient CO2. This is because WT leaves maintain the ratio of RuBP per Rubisco site about twofold higher than the level required to achieve a maximal rate of CO2 assimilation.
    Type of Medium: Electronic Resource
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