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  • 1
    Publication Date: 2014-10-10
    Description: Diabetes mellitus (DM) is one of the world's most prevalent medical conditions. Contemporary management focuses on lowering mean blood glucose values toward a normal range, but largely ignores the dynamics of glucose fluctuations. We probed analyte time series obtained from continuous glucose monitor (CGM) sensors. We show that the fluctuations in CGM values sampled every 5 min are not uncorrelated noise. Next, using multiscale entropy analysis, we quantified the complexity of the temporal structure of the CGM time series from a group of elderly subjects with type 2 DM and age-matched controls. We further probed the structure of these CGM time series using detrended fluctuation analysis. Our findings indicate that the dynamics of glucose fluctuations from control subjects are more complex than those of subjects with type 2 DM over time scales ranging from about 5 min to 5 h. These findings support consideration of a new framework, dynamical glucometry , to guide mechanistic research and to help assess and compare therapeutic interventions, which should enhance complexity of glucose fluctuations and not just lower mean and variance of blood glucose levels.
    Print ISSN: 1054-1500
    Electronic ISSN: 1089-7682
    Topics: Physics
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  • 2
    Publication Date: 2014-09-05
    Description: We report an atomistic molecular dynamics determination of the phase diagram of a rigid-cage model of C 36 . We first show that free energies obtained via thermodynamic integrations along isotherms displaying “van der Waals loops,” are fully reproduced by those obtained via isothermal-isochoric integration encompassing only stable states. We find that a similar result also holds for isochoric paths crossing van der Waals regions of the isotherms, and for integrations extending to rather high densities where liquid-solid coexistence can be expected to occur. On such a basis we are able to map the whole phase diagram of C 36 , with resulting triple point and critical temperatures about 1770 K and 2370 K, respectively. We thus predict a 600 K window of existence of a stable liquid phase. Also, at the triple point density, we find that the structural functions and the diffusion coefficient maintain a liquid-like character down to 1400–1300 K, this indicating a wide region of possible supercooling. We discuss why all these features might render possible the observation of the melting of C 36 fullerite and of its liquid state, at variance with what previously experienced for C 60 .
    Print ISSN: 0021-9606
    Electronic ISSN: 1089-7690
    Topics: Chemistry and Pharmacology , Physics
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  • 3
    Publication Date: 2014-09-24
    Description: Diabetes mellitus (DM) is one of the world's most prevalent medical conditions. Contemporary management focuses on lowering mean blood glucose values toward a normal range, but largely ignores the dynamics of glucose fluctuations. We probed analyte time series obtained from continuous glucose monitor (CGM) sensors. We show that the fluctuations in CGM values sampled every 5 min are not uncorrelated noise. Next, using multiscale entropy analysis, we quantified the complexity of the temporal structure of the CGM time series from a group of elderly subjects with type 2 DM and age-matched controls. We further probed the structure of these CGM time series using detrended fluctuation analysis. Our findings indicate that the dynamics of glucose fluctuations from control subjects are more complex than those of subjects with type 2 DM over time scales ranging from about 5 min to 5 h. These findings support consideration of a new framework, dynamical glucometry , to guide mechanistic research and to help assess and compare therapeutic interventions, which should enhance complexity of glucose fluctuations and not just lower mean and variance of blood glucose levels.
    Print ISSN: 1054-1500
    Electronic ISSN: 1089-7682
    Topics: Physics
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  • 4
    Publication Date: 2016-01-06
    Description: In this study, Boltzmann inversion is applied in conjunction with molecular dynamics simulations to derive inter-molecular potential for protein lysozyme in aqueous solution directly from experimental static structure factor. The potential has a soft repulsion at short distances and an attraction well at intermediate distances that give rise to the liquid-liquid phase separation. Moreover, Gibbs ensemble Monte Carlo simulations demonstrate that a non-spherical description of lysozyme is better suited to correctly reproduce the experimentally observed properties of such a phase separation. Our findings shed new light on the common problem in molecular and cell biology: “How to model proteins in their natural aqueous environments?”
    Print ISSN: 0021-9606
    Electronic ISSN: 1089-7690
    Topics: Chemistry and Pharmacology , Physics
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  • 5
  • 6
    ISSN: 1520-4804
    Source: ACS Legacy Archives
    Topics: Chemistry and Pharmacology
    Type of Medium: Electronic Resource
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  • 7
    Electronic Resource
    Electronic Resource
    College Park, Md. : American Institute of Physics (AIP)
    The Journal of Chemical Physics 106 (1997), S. 255-263 
    ISSN: 1089-7690
    Source: AIP Digital Archive
    Topics: Physics , Chemistry and Pharmacology
    Notes: Extensive Gibbs ensemble Monte Carlo (GEMC) simulations of a rigid molecule model of C60, characterized by a deeply attractive short-ranged interaction potential, are performed with the aim to establish the effect of the system size on the existence and location of the liquid–vapor binodal line and of its critical point. The results obtained with N=300, 600, and 1500 particles indicate that the position and the overall shape of the binodal is only minorly influenced by finite size effects. The estimated critical temperature and density at the different N fall in the ranges 1920–1940 K, and 0.4–0.45 nm−3, respectively. The results are discussed by making reference to previous studies of finite size effects in GEMC simulations. The GEMC predictions are also compared with previous computer simulation and theoretical calculations for the same model fluid. The agreement is on the whole satisfactory for both the liquid–vapor coexistence line and the critical point parameters. On the basis of previously determined freezing lines of C60, and of the actual binodal line, different estimates of the location of the triple point are also made. Triple point temperatures are found, in any case, definitely lower (by at least 150 K) than the critical temperatures, thus confirming the existence of a relatively narrow liquid phase region in the phase diagram, as predicted in previous molecular dynamics and theoretical works. The existence of such a liquid phase for the adopted model potential is discussed and assessed in the more general framework of liquid–vapor coexistence conditions in fluids interacting through short-ranged forces. The possibility to get the liquid phase of "real life" C60, hitherto not observed experimentally, is also discussed in connection with recent high temperature experimental results on fullerite samples. © 1997 American Institute of Physics.
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  • 8
    Electronic Resource
    Electronic Resource
    College Park, Md. : American Institute of Physics (AIP)
    The Journal of Chemical Physics 109 (1998), S. 4498-4507 
    ISSN: 1089-7690
    Source: AIP Digital Archive
    Topics: Physics , Chemistry and Pharmacology
    Notes: The phase diagrams of hard-core Yukawa mixtures (HCYM), constituted of equal sized hard spheres interacting through an attractive Yukawa tail, are determined by means of Gibbs Ensemble Monte Carlo (GEMC) simulations, Semi-grand Canonical Monte Carlo (SGCMC) simulations, and through the modified hypernetted-chain (MHNC) theory. Freezing lines are obtained according to an approach recently proposed by Giaquinta and co-workers [Physica A 187, 145 (1992); Phys Rev. A 45, 6966 (1992)] in which an analysis of multiparticle contributions to the excess entropy, Δs, is performed, with the determination of the Δs=0 locus. Liquid–vapor coexistence, determined through GEMC simulations, turns out to be favored when the strength ratio ν of unlike to like particle interaction, is close to 1. For lower ν's, liquid–vapor coexistence is favored at low densities, and liquid–liquid coexistence, determined through SGCMC simulations, at high densities. The liquid–vapor binodal shifts downward in temperature and flattens when ν decreases, with a decrease of the critical temperature. At ν=0.9 a triple point can be identified from the intersection of the freezing line with the binodal line; at ν=0.7, instead, the binodal ends on the line of liquid–liquid (consolute) critical points, the intersection of the two lines thus identifying the "crossover" density and temperature between the two equilibrium regimes which correspond to the critical end point of the mixture. We find that, for not too high densities, consolute equilibrium can be also explored through GEMC simulations; the results for liquid–liquid coexistence obtained through this method and SGCMC simulations compare quite satisfactorily with each other. The trend of the liquid–vapor binodal to disappear for relatively weak unlike interactions is discussed in connection with the disappearance of liquid–vapor equilibrium which occurs in one component hard-core Yukawa fluids characterized by very short ranged attractive forces. The latter behavior has been conjectured to be relevant for the onset of crystallization in protein solutions; the implications of the present results, which are obtained in the context of a two component, albeit rough, modelization of a realistic solution, are discussed. In agreement with similar results obtained by Giaquinta et al., we finally find that the Δs=0 locus not only brings the signature of the freezing transition, but also of structural rearrangements preluding to other phase equilibria; in fact, the Δs=0 line turns out to be coincident to a high accuracy with the line of consolute critical points and with the gas branches of the liquid–vapor binodals. © 1998 American Institute of Physics.
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  • 9
    Electronic Resource
    Electronic Resource
    College Park, Md. : American Institute of Physics (AIP)
    The Journal of Chemical Physics 116 (2002), S. 3327-3338 
    ISSN: 1089-7690
    Source: AIP Digital Archive
    Topics: Physics , Chemistry and Pharmacology
    Notes: By molecular dynamics (MD) simulations we study the crystallization process in a model system whose particles interact by a spherical pair potential with a narrow and deep attractive well adjacent to a hard repulsive core. The phase diagram of the model displays a solid–fluid equilibrium, with a metastable fluid–fluid separation. Our computations are restricted to fairly small systems (from 2592 to 10368 particles) and cover long simulation times, with constant energy trajectories extending up to 76×106 MD steps. By progressively reducing the system temperature below the solid–fluid line, we first observe the metastable fluid–fluid separation, occurring readily and almost reversibly upon crossing the corresponding line in the phase diagram. The nucleation of the crystal phase takes place when the system is in the two-fluid metastable region. Analysis of the temperature dependence of the nucleation time allows us to estimate directly the nucleation free energy barrier. The results are compared with the predictions of classical nucleation theory. The critical nucleus is identified, and its structure is found to be predominantly fcc. Following nucleation, the solid phase grows steadily across the system, incorporating a large number of localized and extended defects. We discuss the relaxation processes taking place both during and after the crystallization stage. The relevance of our simulation for the kinetics of protein crystallization under normal experimental conditions is discussed. © 2002 American Institute of Physics.
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  • 10
    Publication Date: 2010-07-22
    Print ISSN: 1520-6106
    Electronic ISSN: 1520-5207
    Topics: Chemistry and Pharmacology , Physics
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