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  • Springer  (55)
  • Molecular Diversity Preservation International (MDPI)
  • 1995-1999  (55)
  • 1
    ISSN: 0948-5023
    Keywords: γ-turn ; Peptidomimetics ; Similarity indices
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Notes: Abstract The ability of a series of structures to mimic the geometric and electronic properties of an ideal γ–turn has been studied. Initially, an exhaustive conformational analysis was carried out using the molecular dynamics technique at high temperature followed by minimization. Additionally, each minimum was optimized with the semi–ab initio molecular orbital method SAM1. Then, the unique minima found have been superimposed with ideal γ–turns, classic and inverse, using the SEAL program which takes into account steric and electronic parameters for the superpositions and finally, three molecular similarity indices were determined for each superposition. These indices consider the general steric and electronic characteristics of the structures, as well as, the position of the carbon atoms that correspond to the Cαi and Cαi+2 in the peptide chain.
    Type of Medium: Electronic Resource
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  • 2
    ISSN: 1573-3904
    Keywords: Restricted NT8−13 analogues ; Molecular modeling ; Diastereomeric 3-oxoindolizidine building blocks ; Affinity for brain NT receptors
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Notes: Summary In order to enforce different spatial orientations in the C-terminal hexapeptide of neurotensin (NT8−13) and to gain information about the importance of the 10–11 peptide bond for binding to NT receptors, the Pro10-Tyr11 fragment has been replaced with (2R,8S,8aR)-, (2S,8S,8aR)-, (2S,8S,8aS)-, (2S,8R,8aS)- and (2R,8R,8aS)-8-amino-2-benzyl-3-oxoindolizidine-2-carboxylic acid. Molecular dynamics calculations and energy minimization studies have shown that, contrarily to the Pro-Tyr moiety, none of these indolizidines display a tendency to adopt type I and III β-turns, but those having (8S,8aR) or (8R,8aS) stereochemistry essentially adopt extended conformations and the (8S,8aS) stereoisomer prefers a nonstandard folding. The four diastereomeric NT8−13 analogues incorporating (8S,8aR) or (8R,8aS) indolizidines displayed binding affinities for the brain NT receptor similar to that of [Ala11]-NT8−13 and only five- to ninefold lower than that of the corresponding analogue, [Phe11]NT8−13. Although this slight decrease could be attributed to differences in conformational behavior between these constrained NT8−13 analogues and [Phe11]NT8−13 or NT8−13, it is not clear whether the β-turn around Pro10-AA11 (AA=Phe, Tyr) is conserved upon receptor binding. An excessive restriction in the motions of the aromatic side chain, imposed by the highly steric constraint of the indolizidine moiety, emerges as an alternative explanation. The findings reported here demonstrate the possibility of replacing the Pro10-Tyr11 dipeptide in NT8−13 with a non-peptide residue without affecting considerably the affinity for brain NT receptors.
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  • 3
    Publication Date: 1996-03-01
    Print ISSN: 1610-2940
    Electronic ISSN: 0948-5023
    Topics: Chemistry and Pharmacology
    Published by Springer
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  • 4
    Publication Date: 1996-03-01
    Print ISSN: 1610-2940
    Electronic ISSN: 0948-5023
    Topics: Chemistry and Pharmacology
    Published by Springer
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  • 5
    ISSN: 1572-8927
    Keywords: Sodium hexyl sulfate ; sodium octyl sulfate ; sodium decyl sulfate ; sodium dodecyl sulfate ; formamide ; hexanol ; surface tension ; apparent molar volume ; apparent molar heat capacity
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Notes: Abstract Density measurements of sodium dodecyl sulfate (SDS), sodium decyl sulfate (SDeS), sodium octyl sulfate(SOS), and sodium hexyl sulfate(SHS) in formamide (FA) as functions of the surfactant concentrations were carried out at 25°C. For SDS in FA, additional density measurements at 35 and 60°C and surface tension and specific heat capacity measurements at 25°C were also performed. From density and specific heat capacity data, the apparent molar volume and heat capacity of the surfactants as functions of concentration were calculated. The surface excess of SDS at the solution–air interface was also determined from the surface tension measurements using the Gibbs adsorption equation. Under our experimental conditions, none of the experimental results evidence micelle formation. In addition, volumetric studies of the hexanol–SDS–FA ternary system at 25°C evidence only interactions between the dispersed surfactant and alcohol.
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  • 6
    ISSN: 1432-1432
    Keywords: Key words: Lateral gene transfer — UDP-glucose dehydrogenase — Capsular polysaccharides — Pneumococcus
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract. Capsular polysaccharides are important virulence factors both in Gram-positive and Gram-negative bacteria. A similar cluster organization of the genes involved in the synthesis of bacterial exopolysaccharides has been postulated in both cases, suggesting that these clusters evolved by module assembly. Horizontal gene transfer has been postulated to explain the polymorphism found in these cellular polymers. The cap1K and cap3A genes coding for the pneumococcal type 1 and type 3 UDP-glucose dehydrogenases, respectively, have been compared with other UDP-sugar dehydrogenases. We have observed that the evolutionary distance between Cap1K and Cap3A is approximately equal to that found between Cap1K (or Cap3A) and other UDP-GlcDH of families evolutionarily distant like KfiD, the dehydrogenase from Escherichia coli K5. On the basis of comparisons of G + C content, patterns of synonymous and nonsynonymous substitutions, dinucleotide frequencies, and codon usage bias, we conclude that the kfiD gene has been introduced into E. coli from an exogenous source, probably from a streptococcal species.
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  • 7
    ISSN: 1436-5073
    Keywords: intercomparison ; analytical methods ; rainwater
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Notes: Abstract Three intercomparison exercises on simulated rainwater were held in the period 1991–93 involving 72 to 99 laboratories in Europe and South America. The exercises required the analysis of pH, conductivity, main anions (Cl−, NO 3 − and SO 4 2− ) and main cations (Ca2+, K+, Mg2+, Na+ and NH 4 + ). The concentrations of the single ions ranged between 5 and 150 μmoll−1. Results were used to evaluate and compare the precision of the analytical methods. A general improvement in precision was observed in the course of the exercises.
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  • 8
    ISSN: 1436-5073
    Keywords: 1-naphthylacetic acid ; solid-phase spectrofluorimetry ; phytohormones analysis ; water analysis
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Notes: Abstract A method for the determination of trace amounts of 1-naphthylacetic acid (NAA) has been developed, based on solid-phase spectrofluorimetry. The relative fluorescence intensity of NAA fixed on Sephadex QAE A-25 gel was measured directly after packing the gel beads in a 1-mm silica cell, using a solid-phase attachment. The wavelengths of excitation and emission were 280 and 336 nm, respectively. The applicable concentration range was from 0.3 to 18 ng/ ml, with a relative standard deviation of 1.4% (for a level of 9 ng/ml) and a detection limit of 0.09 ng/ml. The method was applied to the determination of NAA in commercial formulations and natural waters. The method is more sensitive and selective than other methods described in the literature.
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  • 9
    ISSN: 1436-5073
    Keywords: arsenic speciation ; hydride generation-AAS ; multivariate calibration ; sea water ; drinking water
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Notes: Abstract This paper compares three multivariate calibration methods, namely classical least squares (CLS), inverse least squares (ILS) and Kaiman filter, applied to continuous-flow hydride generation with sodium tetrahydroborate(III) reducing agent and AAS detection for the purposes of speciation of As(III), As(V), monomethylarsonic acid (MMA), and dimethylarsinic acid (DMA). The precision of the three multivariate methods was compared in the calibration and prediction steps by standard error of prediction (SEP) and relative error of prediction (REP), respectively, for each analyte and no significant differences have been found for As(III), As(V), MMA, and DMA when the F-test was applied to compare the three multivariate calibration methods in pairs at the 95% confidence level. Determination of the As species was carried out in spiked drinking and sea water in the range 7−35 μg 1−1. Recoveries were in all cases around 100% and the detection limit for the least sensitive species was close to 5 μg 1−1.
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  • 10
    ISSN: 1436-5073
    Keywords: adsorbable organic halogen ; chloride ; bromide ; microwave induced plasmas ; optical emission spectrometry
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Notes: Abstract The element specific detection of the adsorbable organic halogen (AOX) parameter in waters has been investigated by adsorption of the halogenated analytes on activated carbon, incineration to yield carbon dioxide and hydrogen halide, trapping of the halide on a 0.01 M sodium hydroxide solution and online introduction of the halogen formed by continuous oxidation into a microwave induced plasma (MIP). Detection has been carried out by optical emission spectrometry (OES) in the visible spectral region. The performance of three microwave cavities for MIP-OES running at atmospheric pressure (Beenakker, Surfatron and Microwave Plasma Torch) as well as a reduced pressure Surfatron were investigated for halide analysis. The Surfatron device operated at 30 torr provided the best detection limits: 3ng.ml−1 for chloride and 8 ng.ml−1 for bromide; consequently, it was the plasma chosen for AOX analysis. On-line continuous oxidation of organic compounds using KMnO4 in H2SO4 medium and in batch catalytic dechlorination with a Fe/Pd system were investigated as alternatives to the incineration method for the destruction of organic halogens to render inorganic halides are also investigated. Finally, the optimized method has been applied successfully to the determination of organochloride and organobromide in spiked river waters, being the recoveries in the interval 92–105%.
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