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High quality G-to-A SNPs from the genomes of 96 wild caught three-spine sticklebacks (2019)

Meyer, Britta S ; Heckwolf, Melanie ; Häsler, Robert ; [et al.]

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Publication Date: 2023-01-13

Description: To improve the methylation estimates in our study, we corrected for SNPs, which could have led to a wrong methylation call. The excluded positions were derived with custom written perl scripts from C-to-T and G-to-A-SNPs with genotype quality of 20 and a minimum allele frequency of 0.005 from the 96 wild caught three-spined sticklebacks with a combination of custom written Perl and R-scripts using packages from methylkit and GenomicRanges. This BED-file contains the G-to-A-SNPs, in which the first field is the name of the chromosome; the second describes the start position and the third the end position of the feature in standard chromosomal coordinates.

Keywords: Baltic Sea; BED; Local adaptation; methylation call; population genomics; SNP; three-spined stickleback; Whole genome sequencing

Type: Dataset

Format: application/zip, 5.8 MBytes

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High quality C-to-T SNPs from the genomes of 96 wild caught three-spine sticklebacks (2019)

Meyer, Britta S ; Heckwolf, Melanie ; Häsler, Robert ; [et al.]

PANGAEA

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Publication Date: 2023-01-13

Description: To improve the methylation estimates in our study, we corrected for SNPs, which could have led to a wrong methylation call. The excluded positions were derived with custom written perl scripts from C-to-T and G-to-A-SNPs with genotype quality of 20 and a minimum allele frequency of 0.005 from the 96 wild caught three-spined sticklebacks with a combination of custom written Perl and R-scripts using packages from methylkit and GenomicRanges. This BED-file contains the C-to-T SNPs, in which the first field is the name of the chromosome; the second describes the start position and the third the end position of the feature in standard chromosomal coordinates.

Keywords: Baltic Sea; BED; Local adaptation; methylation call; population genomics; SNP; three-spined stickleback; Whole genome sequencing

Type: Dataset

Format: application/zip, 5.8 MBytes

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Seawater carbonate chemistry and growth rate of three phytoplankton species in response to ocean acidification (2017)

Hattich, Giannina S I ; Listmann, Luisa ; Raab, Julia ; [et al.]

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Publication Date: 2024-03-15

Keywords: Alkalinity, total; Alkalinity, total, standard deviation; Aragonite saturation state; Bicarbonate ion; Bottles or small containers/Aquaria (〈20 L); Calcite saturation state; Calculated using seacarb after Nisumaa et al. (2010); Carbon, inorganic, dissolved; Carbon, inorganic, dissolved, standard deviation; Carbonate ion; Carbonate system computation flag; Carbon dioxide; Chaetoceros affinis; Chromista; Emiliania huxleyi; Experiment duration; Fugacity of carbon dioxide (water) at sea surface temperature (wet air); Genotype; Gephyrocapsa oceanica; Growth/Morphology; Growth rate; Haptophyta; Laboratory experiment; Laboratory strains; North Atlantic; OA-ICC; Ocean Acidification International Coordination Centre; Partial pressure of carbon dioxide (water) at sea surface temperature (wet air); Pelagos; pH; Phytoplankton; Registration number of species; Replicate; Salinity; Single species; Species; Temperature, water; Treatment; Type; Uniform resource locator/link to reference

Type: Dataset

Format: text/tab-separated-values, 4500 data points

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