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  • PANGAEA  (19)
  • Springer Nature  (3)
  • COPERNICUS GESELLSCHAFT MBH  (1)
  • Nature Publishing Group
  • 2015-2019  (23)
Collection
Keywords
Publisher
Years
Year
  • 1
  • 2
    Publication Date: 2016-05-16
    Print ISSN: 1758-678X
    Electronic ISSN: 1758-6798
    Topics: Geosciences
    Published by Springer Nature
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  • 3
  • 4
    Publication Date: 2017-03-21
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , isiRev , info:eu-repo/semantics/article
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  • 5
    Publication Date: 2024-01-06
    Description: The Tara Oceans Expedition (2009-2013) sampled the world oceans on board a 36 m long schooner, collecting environmental data and organisms from viruses to planktonic metazoans for later analyses using modern sequencing and state-of-the-art imaging technologies. Tara Oceans Data are particularly suited to study the genetic, morphological and functional diversity of plankton. During the entire expedition (2009-2013), underway measurements were obtained from a meteorological station (BATOS), a thermosalinograph (TSG, SBE 45), a Fast Repetition Rate Flurometer (FRRF, LIFT-FRR01), and a spectrophotometer (WETLabs AC-S). In 2013 underway measurements were enhanced by adding a Photosynthetically Available Radiation (PAR) sensor (QCP2350, Biospherical Instruments, Inc.), a laser spectrofluorometer (WETLabs ALFA, Chekalyuk et al., 2012) that replaced the FRRF, a spectral backscattering sensor (WETLabs Eco-bb3), a pCO2 sensor (ProOceanus CO2-Pro), a pH sensor (Satlantic, SeaFET) and a particle imaging system triggered by chlorophyll-a fluorescence (a prototype of McLane Research Laboratories' Imaging FlowCytobot, Sosik Lab, WHOI). Discrete measurements of CDOM absorption measurements were made using an Ultrapath (WPI Inc.) to calibrate the in-line AC-S. Hence the AC-S was also used to provide CDOM absorption in addition to particulate matter properties. The present collection includes three data sets that are harmonised with a common time stamp. The source data sets given in the reference section.
    Keywords: Fondation Tara Expeditions; FondTara; Tara_Oceans_2009-2013; Tara Oceans Expedition
    Type: Dataset
    Format: application/zip, 3 datasets
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  • 6
    Publication Date: 2024-02-17
    Description: The Tara Oceans Expedition (2009-2013) sampled the world oceans on board a 36 m long schooner, collecting environmental data and organisms from viruses to planktonic metazoans for later analyses using modern sequencing and state-of-the-art imaging technologies. Tara Oceans Data are particularly suited to study the genetic, morphological and functional diversity of plankton. The present data set provides raw validated data of continuous pH measurements made during 2013 expedition with a Satlantic SeaFET instrument that was connected to the flowthrough system. Data calibration was performed according to Bresnahan et al. (2014) (using spectrophotometric pH measurements on discrete samples (Clayton and Byrne 1993). pH_internal values were taken to calibrate the data (rather than pH_external) because of the better calibration coefficient (there was no trend associated with it). The equations of Clayton and Byrne (1993) was used to compute pH from the measured absorbance values at the temperature of measurement. The data was converted to in situ temperature using the “CO2-sys” program (van Heusen et al. 2011).
    Keywords: Fondation Tara Expeditions; FondTara; Tara_Oceans_2009-2013; Tara Oceans Expedition
    Type: Dataset
    Format: application/zip, 843.4 kBytes
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  • 7
    Publication Date: 2024-02-17
    Description: The Tara Oceans Expedition (2009-2013) sampled the world oceans on board a 36 m long schooner, collecting environmental data and organisms from viruses to planktonic metazoans for later analyses using modern sequencing and state-of-the-art imaging technologies. Tara Oceans Data are particularly suited to study the genetic, morphological and functional diversity of plankton. During the entire expedition (2009-2013), underway measurements were obtained from a meteorological station (BATOS), a thermosalinograph (TSG, SBE 45), a Fast Repetition Rate Flurometer (FRRF, LIFT-FRR01), and a spectrophotometer (WETLabs AC-S). In 2013 underway measurements were enhanced by adding a Photosynthetically Available Radiation (PAR) sensor (QCP2350, Biospherical Instruments, Inc.), a laser spectrofluorometer (WETLabs ALFA, Chekalyuk et al., 2012) that replaced the FRRF, a spectral backscattering sensor (WETLabs Eco-bb3), a pCO2 sensor (ProOceanus CO2-Pro), a pH sensor (Satlantic, SeaFET) and a particle imaging system triggered by chlorophyll-a fluorescence (a prototype of McLane Research Laboratories' Imaging FlowCytobot, Sosik Lab, WHOI). Discrete measurements of CDOM absorption measurements were made using an Ultrapath (WPI Inc.) to calibrate the in-line AC-S. Hence the AC-S was also used to provide CDOM absorption in addition to particulate matter properties. The present dataset contains surface water data measured during the 2013 campaigns of the Tara Oceans Expedition. Latitude and Longitude were obtained from TSG data. The time stamp of this data set is harmonised with that of other underway data in this collection.
    Keywords: [CSSS]; [day/night] [surface water layer (ENVO:00002042)]; Aquatic Laser Fluorescence Analyzer (ALFA); Backscattering coefficient of particles, 470 nm; Backscattering coefficient of particles, 526 nm; Backscattering coefficient of particles, 660 nm; Basis of event; Campaign of event; Chlorophyll a; Comment of event; Continuous Surface Sampling System; DATE/TIME; DEPTH, water; Dudinka to Pevek, Stations: TARA_182-192; Event label; Fluorescence, chlorophyll; Fluorescence, colored dissolved organic matter; Fondation Tara Expeditions; FondTara; Fugacity of carbon dioxide (water) at equilibrator temperature (wet air); Ilulissat to Québec, Stations: TARA_208-210; LATITUDE; LONGITUDE; Lorient to Tromsø, Stations: TARA_155-166; Maximum photochemical quantum yield of photosystem II; Method/Device of event; Murmansk to Dudinka, Stations: TARA_167-181; NASA Ocean Biology & Biogeochemistry Programme; OBB; Optional event label; Particle size distribution slope; Particulate organic carbon; Pevek to Tuktoyaktuk, Stations: TARA_193-199; pH; pH sensor, Satlantic SeaFET; Québec to Lorient, Stations: none; registered at PANGAEA, Data Publisher for Earth and Environmental Science; registered at the European Nucleotides Archive (ENA); Salinity; Spectral backscattering sensor (WET Labs, Eco-bb3); Spectrophotometer, WET Labs, Inc., AC-S; Station label; SV Tara; TARA_20130519Z; TARA_20130519Z_UDW_EVENT_CSSS; TARA_20130629Z; TARA_20130629Z_UDW_EVENT_CSSS; TARA_20130801Z; TARA_20130801Z_UDW_EVENT_CSSS; TARA_20130907Z; TARA_20130907Z_UDW_EVENT_CSSS; TARA_20130921Z; TARA_20130921Z_UDW_EVENT_CSSS; TARA_20131020Z; TARA_20131020Z_UDW_EVENT_CSSS; TARA_20131116Z; TARA_20131116Z_UDW_EVENT_CSSS; Tara_Oceans_2009-2013; Tara Oceans Expedition; Temperature, water; Thermosalinograph; TSG; Tuktoyaktuk to Ilulissat, Stations: TARA_200-207; underway pCO2 measuring instrument (ProOceanus CO2-Pro)
    Type: Dataset
    Format: text/tab-separated-values, 345386 data points
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  • 8
    Publication Date: 2024-01-20
    Description: Coastal marine ecosystems experience dynamic fluctuations in seawater carbonate chemistry. The importance of this variation in the context of ocean acidification requires knowing what aspect of variability biological processes respond to. We conducted four experiments (ranging from 3 to 22 days) with different variability regimes (pHT 7.4–8.1) assessing the impact of diel fluctuations in carbonate chemistry on the early development of the mussel Mytilus galloprovincialis. Larval shell growth was consistently correlated to mean exposures, regardless of variability regimes, indicating that calcification responds instantaneously to seawater chemistry. Larval development was impacted by timing of exposure, revealing sensitivity of two developmental processes: development of the shell field, and transition from the first to the second larval shell. Fluorescent staining revealed developmental delay of the shell field at low pH, and abnormal development thereof was correlated with hinge defects in D-veligers. This study shows, for the first time, that ocean acidification affects larval soft-tissue development, independent from calcification. Multiple developmental processes additively underpin the teratogenic effect of ocean acidification on bivalve larvae. These results explain why trochophores are the most sensitive life-history stage in marine bivalves and suggest that short-term variability in carbonate chemistry can impact early larval development.
    Keywords: Animalia; Calcification/Dissolution; Coast and continental shelf; Containers and aquaria (20-1000 L or 〈 1 m**2); Development; Growth/Morphology; Laboratory experiment; Mediterranean Sea; Mollusca; Mytilus galloprovincialis; OA-ICC; Ocean Acidification International Coordination Centre; Other; Pelagos; Single species; Temperate; Zooplankton
    Type: Dataset
    Format: application/zip, 3 datasets
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  • 9
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    PANGAEA
    In:  Supplement to: Howes, Ella L; Kaczmarek, Karina; Raitzsch, Markus; Mewes, A; Bijma, N; Horn, Ingo; Misra, Sambuddha; Gattuso, Jean-Pierre; Bijma, Jelle (2017): Decoupled carbonate chemistry controls on the incorporation of boron into Orbulina universa. Biogeosciences, 14(2), 415-430, https://doi.org/10.5194/bg-14-415-2017
    Publication Date: 2024-03-15
    Description: In order to fully constrain paleo-carbonate systems, proxies for two out of seven parameters, plus temperature and salinity are required. The boron isotopic composition (delta 11B) of planktonic foraminifera shells is a powerful tool to reconstruct changes in past surface ocean pH. As [B(OH)]4- is substituted into the biogenic calcite lattice in place of [CO3]2-, it has been suggested that B/Ca ratios in biogenic calcite are a possible proxy for [CO3]2-. However, differentiating between the effects of pH and [CO3]2- is problematic, as they co-vary closely in natural systems, and so the major control on boron incorporation remains unclear. To deconvolve the effects of pH and [CO3]2- on the B/Ca ratio and to test whether d11B remains constant at constant pH, but under changing [CO3]2- (pH 8.05 with 238, 285 and 532 µmol/kg [CO3]2-) and vice versa, we decoupled pH and [CO3]2- (276 +/- 19.5 µmol/kg [CO3]2- with pH 7.7, 7.9 and 8.05) and grew the planktonic foraminifer Orbulina universa in these manipulated culture media. Measurements of the isotope composition of boron and the B/Ca ratio were performed simultaneously using a femtosecond laser ablation system coupled to an MC ICP-MS. Results show that delta11B is controlled by pH and does not respond to changes in [CO3]2-. On the other hand, the B/Ca ratio is driven by [HCO3]- independently of pH. This suggests that B/Ca ratios in foraminiferal calcite may be used as a second, independent, proxy for paleo-carbonate system reconstructions.
    Keywords: Alkalinity, total; Alkalinity, total, standard deviation; Aragonite saturation state; Bicarbonate ion; Bottles or small containers/Aquaria (〈20 L); Calcite saturation state; Calculated using seacarb; Calculated using seacarb after Nisumaa et al. (2010); Carbon, inorganic, dissolved; Carbonate ion; Carbonate system computation flag; Carbon dioxide; Chromista; Coast and continental shelf; EXP; Experiment; Foraminifera; Fugacity of carbon dioxide (water) at sea surface temperature (wet air); Heterotrophic prokaryotes; Laboratory experiment; Mediterranean Sea; OA-ICC; Ocean Acidification International Coordination Centre; Other studied parameter or process; Partial pressure of carbon dioxide (water) at sea surface temperature (wet air); Pelagos; pH; Potentiometric; Potentiometric titration; Registration number of species; Salinity; Salinity, standard deviation; Single species; Species; Temperate; Temperature, standard deviation; Temperature, water; Type; Uniform resource locator/link to reference; Villefranche-2012; δ11B
    Type: Dataset
    Format: text/tab-separated-values, 1820 data points
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  • 10
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    Unknown
    PANGAEA
    In:  Supplement to: Cox, T Erin; Schenone, Stefano; Delille, Jeremy; Díaz-Castañeda, Victoria; Alliouane, Samir; Gattuso, Jean-Pierre; Gazeau, Frédéric (2015): Effects of ocean acidification on Posidonia oceanica epiphytic community and shoot productivity. Journal of Ecology, 103(6), 1594-1609, https://doi.org/10.1111/1365-2745.12477
    Publication Date: 2024-03-15
    Description: 1. Biological interactions can alter predictions that are based on single-species physiological response. It is known that leaf segments of the seagrass Posidonia oceanica will increase photosynthesis with lowered pH, but it is not clear whether the outcome will be altered when the whole plant and its epiphyte community, with different respiratory and photosynthetic demands, are included. In addition, the effects on the Posidonia epiphyte community have rarely been tested under controlled conditions, at near-future pH levels. 2. In order to better evaluate the effects of pH levels as projected for the upcoming decades on seagrass meadows, shoots of P. oceanica with their associated epiphytes were exposed in the laboratory to three pH levels (ambient: 8.1, 7.7 and 7.3, on the total scale) for 4 weeks. Net productivity, respiration, net calcification and leaf fluorescence were measured on several occasions. At the end of the study, epiphyte community abundance and composition, calcareous mass and crustose coralline algae growth were determined. Finally, photosynthesis vs. irradiance curves (PE) was produced from segments of secondary leaves cleaned of epiphytes and pigments extracted. 3. Posidonia leaf fluorescence and chlorophyll concentrations did not differ between pH treatments. Net productivity of entire shoots and epiphyte-free secondary leaves increased significantly at the lowest pH level yet limited or no stimulation in productivity was observed at the intermediate pH treatment. Under both pH treatments, significant decreases in epiphytic cover were observed, mostly due to the reduction of crustose coralline algae. The loss of the dominant epiphyte producer yet similar photosynthetic response for epiphyte-free secondary leaves and shoots suggests a minimal contribution of epiphytes to shoot productivity under experimental conditions. 4. Synthesis. Observed responses indicate that under future ocean acidification conditions foreseen in the next century an increase in Posidonia productivity is not likely despite the partial loss of epiphytic coralline algae which are competitors for light. A decline in epiphytic cover could, however, reduce the feeding capacity of the meadow for invertebrates. In situ long-term experiments that consider both acidification and warming scenarios are needed to improve ecosystem-level predictions.
    Keywords: Alkalinity, total; Alkalinity, total, standard deviation; Aragonite saturation state; Aragonite saturation state, standard deviation; Benthos; Bicarbonate ion; Bottles or small containers/Aquaria (〈20 L); Calcification/Dissolution; Calcite saturation state; Calcite saturation state, standard deviation; Calculated using seacarb; Calculated using seacarb after Nisumaa et al. (2010); Carbon, inorganic, dissolved; Carbon, inorganic, dissolved, standard deviation; Carbonate ion; Carbonate system computation flag; Carbon dioxide; Coast and continental shelf; Community composition and diversity; Counts; Counts, standard deviation; Coverage; Description; Effective quantum yield; Effective quantum yield, standard error; Electron transport rate, relative; Electron transport rate, relative, standard error; EXP; Experiment; Fugacity of carbon dioxide (water) at sea surface temperature (wet air); Group; Infrared gas analyzer; Irradiance; Irradiance, standard error; Laboratory experiment; Leaf net production, oxygen; Leaf net production, oxygen, standard error; Light saturation point; Light saturation point, standard error; Macroalgae; Maximal electron transport rate, relative; Maximal electron transport rate, relative, standard error; Maximum potential capacity of photosynthesis, oxygen; Maximum potential capacity of photosynthesis, oxygen , standard error; Mediterranean Sea; Net calcification rate of calcium carbonate; Net calcification rate of calcium carbonate, standard error; Net primary production of oxygen; Net primary production of oxygen, standard error; OA-ICC; Ocean Acidification International Coordination Centre; Partial pressure of carbon dioxide, standard deviation; Partial pressure of carbon dioxide (water) at sea surface temperature (wet air); pH; pH, standard deviation; Photosynthetic quantum efficiency; Photosynthetic quantum efficiency, standard error; Plantae; Posidonia oceanica; Potentiometric; Potentiometric titration; Primary production/Photosynthesis; Ratio; Registration number of species; Replicates; Respiration; Respiration rate, oxygen; Respiration rate, oxygen, standard error; Salinity; Saturation light intensity; Saturation light intensity, standard error; Single species; Species; Taxon/taxa; Temperate; Temperature, water; Temperature, water, standard deviation; Time point, descriptive; Tracheophyta; Treatment; Type; Uniform resource locator/link to reference; Villefranche_OA
    Type: Dataset
    Format: text/tab-separated-values, 13278 data points
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