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  • Copernicus Publications (EGU)  (6)
  • Oxford University Press  (6)
  • 2020-2024  (12)
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  • 1
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    Factors controlling plankton community production, export flux, and particulate matter stoichiometry in the coastal upwelling system off Peru (2020)
    Copernicus Publications (EGU)
    Details
    Publication Date: 2023-02-08
    Description: Eastern boundary upwelling systems (EBUS) are among the most productive marine ecosystems on Earth. The production of organic material is fueled by upwelling of nutrient-rich deep waters and high incident light at the sea surface. However, biotic and abiotic factors can modify surface production and related biogeochemical processes. Determining these factors is important because EBUS are considered hotspots of climate change, and reliable predictions of their future functioning requires understanding of the mechanisms driving the biogeochemical cycles therein. In this field experiment, we used in situ mesocosms as tools to improve our mechanistic understanding of processes controlling organic matter cycling in the coastal Peruvian upwelling system. Eight mesocosms, each with a volume of ∼55 m3, were deployed for 50 d ∼6 km off Callao (12∘ S) during austral summer 2017, coinciding with a coastal El Niño phase. After mesocosm deployment, we collected subsurface waters at two different locations in the regional oxygen minimum zone (OMZ) and injected these into four mesocosms (mixing ratio ≈1.5 : 1 mesocosm: OMZ water). The focus of this paper is on temporal developments of organic matter production, export, and stoichiometry in the individual mesocosms. The mesocosm phytoplankton communities were initially dominated by diatoms but shifted towards a pronounced dominance of the mixotrophic dinoflagellate (Akashiwo sanguinea) when inorganic nitrogen was exhausted in surface layers. The community shift coincided with a short-term increase in production during the A. sanguinea bloom, which left a pronounced imprint on organic matter C : N : P stoichiometry. However, C, N, and P export fluxes did not increase because A. sanguinea persisted in the water column and did not sink out during the experiment. Accordingly, export fluxes during the study were decoupled from surface production and sustained by the remaining plankton community. Overall, biogeochemical pools and fluxes were surprisingly constant for most of the experiment. We explain this constancy by light limitation through self-shading by phytoplankton and by inorganic nitrogen limitation which constrained phytoplankton growth. Thus, gain and loss processes remained balanced and there were few opportunities for blooms, which represents an event where the system becomes unbalanced. Overall, our mesocosm study revealed some key links between ecological and biogeochemical processes for one of the most economically important regions in the oceans.
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  • 2
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    Nitrogen loss processes in response to upwelling in a Peruvian coastal setting dominated by denitrification – a mesocosm approach (2021)
    Copernicus Publications (EGU)
    Details
    Publication Date: 2024-02-07
    Description: Upwelling of nutrient-rich deep waters make eastern boundary upwelling systems (EBUSs), such as the Humboldt Current system, hot spots of marine productivity. Associated settling of organic matter to depth and consecutive aerobic decomposition results in large subsurface water volumes being oxygen depleted. Under these circumstances, organic matter remineralisation can continue via denitrification, which represents a major loss pathway for bioavailable nitrogen. Additionally, anaerobic ammonium oxidation can remove significant amounts of nitrogen in these areas. Here we assess the interplay of suboxic water upwelling and nitrogen cycling in a manipulative offshore mesocosm experiment. Measured denitrification rates in incubations with water from the oxygen-depleted bottom layer of the mesocosms (via 15N label incubations) mostly ranged between 5.5 and 20 nmol N2 L−1 h−1 (interquartile range), reaching up to 80 nmol N2 L−1 h−1. However, actual in situ rates in the mesocosms, estimated via Michaelis–Menten kinetic scaling, did most likely not exceed 0.2–4.2 nmol N2 L−1 h−1 (interquartile range) due to substrate limitation. In the surrounding Pacific, measured denitrification rates were similar, although indications of substrate limitation were detected only once. In contrast, anammox (anaerobic ammonium oxidation) made only a minor contribution to the overall nitrogen loss when encountered in both the mesocosms and the Pacific Ocean. This was potentially related to organic matter C / N stoichiometry and/or process-specific oxygen and hydrogen sulfide sensitivities. Over the first 38 d of the experiment, total nitrogen loss calculated from in situ rates of denitrification and anammox was comparable to estimates from a full nitrogen budget in the mesocosms and ranged between ∼ 1 and 5.5 µmol N L−1. This represents up to ∼  20 % of the initially bioavailable inorganic and organic nitrogen standing stocks. Interestingly, this loss is comparable to the total amount of particulate organic nitrogen that was exported into the sediment traps at the bottom of the mesocosms at about 20 m depth. Altogether, this suggests that a significant portion, if not the majority of nitrogen that could be exported to depth, is already lost, i.e. converted to N2 in a relatively shallow layer of the surface ocean, provided that there are oxygen-deficient conditions like those during coastal upwelling in our study. Published data for primary productivity and nitrogen loss in all EBUSs reinforce such conclusion.
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  • 3
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    The founding charter of the Omic Biodiversity Observation Network (Omic BON) (2023)
    Oxford University Press
    Details
    Publication Date: 2024-02-07
    Description: Omic BON is a thematic Biodiversity Observation Network under the Group on Earth Observations Biodiversity Observation Network (GEO BON), focused on coordinating the observation of biomolecules in organisms and the environment. Our founding partners include representatives from national, regional, and global observing systems; standards organizations; and data and sample management infrastructures. By coordinating observing strategies, methods, and data flows, Omic BON will facilitate the co-creation of a global omics meta-observatory to generate actionable knowledge. Here, we present key elements of Omic BON's founding charter and first activities.
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  • 4
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    An Equal Burden (2021)
    Oxford University Press
    Details
    Publication Date: 2024-04-01
    Description: "An Equal Burden forms the first scholarly study of the Army Medical Services in the First World War to focus on the roles and experiences of the men of the ranks of the Royal Army Medical Corps (RAMC). These men, through their work as stretcher bearers and orderlies, provided a range of labour, both physical and emotional, in aid of the sick and wounded. They were not professional medical caregivers, yet were called upon to provide medical care, however rudimentary; they served in uniform, under military discipline, yet were forbidden, as non-combatants, from carrying weapons. Their service as men in wartime, was thus unique. Structured both chronologically and thematically, this study examines both the work that RAMC rankers undertook and its importance to the running of the chain of medical evacuation. It additionally explores the gendered status of these men within the medical, military and cultural hierarchies of a society engaged in total war, locating their service within the context of that of doctors, female nurses and combatant servicemen. Through close readings of official documents, personal papers, and cultural representations, both verbal and visual, it argues that the ranks of the RAMC formed a space in which non-commissioned servicemen, through their many roles, defined and redefined medical caregiving as men’s work in wartime."
    Keywords: Royal Army Medical Corps ; First World War ; masculinity ; non-combatants ; military medicine ; care giving ; gender history ; cultural representation ; thema EDItEUR::N History and Archaeology ; thema EDItEUR::3 Time period qualifiers::3M c 1500 onwards to present day::3MP 20th century, c 1900 to c 1999 ; thema EDItEUR::N History and Archaeology::NH History::NHW Military history::NHWR Specific wars and campaigns::NHWR5 First World War ; thema EDItEUR::3 Time period qualifiers::3M c 1500 onwards to present day::3MP 20th century, c 1900 to c 1999::3MPB Early 20th century c 1900 to c 1950::3MPBF c 1910 to c 1919::3MPBFB c 1914 to c 1918 (World War One period) ; thema EDItEUR::M Medicine and Nursing
    Language: English
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  • 5
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    Experimental parasite infection causes genome-wide changes in DNA methylation (2020)
    Oxford University Press
    Details
    Publication Date: 2023-02-08
    Description: Parasites are arguably among the strongest drivers of natural selection, constraining hosts to evolve resistance and tolerance mechanisms. Although, the genetic basis of adaptation to parasite infection has been widely studied, little is known about how epigenetic changes contribute to parasite resistance and eventually, adaptation. Here, we investigated the role of host DNA methylation modifications to respond to parasite infections. In a controlled infection experiment, we used the three-spined stickleback fish, a model species for host-parasite studies, and their nematode parasite Camallanus lacustris. We showed that the levels of DNA methylation are higher in infected fish. Results furthermore suggest correlations between DNA methylation and shifts in key fitness and immune traits between infected and control fish, including respiratory burst and functional trans-generational traits such as the concentration of motile sperm. We revealed that genes associated with metabolic, developmental and regulatory processes (cell death and apoptosis) were differentially methylated between infected and control fish. Interestingly, genes such as the neuropeptide FF receptor 2 and the integrin alpha 1 as well as molecular pathways including the Th1 and Th2 cell differentiation were hypermethylated in infected fish, suggesting parasite-mediated repression mechanisms of immune responses. Altogether, we demonstrate that parasite infection contributes to genome-wide DNA methylation modifications. Our study brings novel insights into the evolution of vertebrate immunity and suggests that epigenetic mechanisms are complementary to genetic responses against parasite-mediated selection.
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  • 6
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    A genomic cluster containing novel and conserved genes is associated with cichlid fish dental developmental convergence (2020)
    Oxford University Press
    Details
    Publication Date: 2023-02-08
    Description: The two toothed jaws of cichlid fishes provide textbook examples of convergent evolution. Tooth phenotypes such as enlarged molar-like teeth used to process hard-shelled molluscs have evolved numerous times independently during cichlid diversification. While the ecological benefit of molar-like teeth to crush prey is known, it is unclear whether the same molecular mechanisms underlie these convergent traits. To identify genes involved in the evolution and development of enlarged cichlid teeth, we performed RNA-seq on the serially homologous toothed oral and pharyngeal jaws as well as the fourth toothless gill arch of Astatoreochromis alluaudi. We identified 27 genes that are highly upregulated on both tooth-bearing jaws compared to the toothless gill arch. Most of these genes have never been reported to play a role in tooth formation. Two of these genes (unk, rpfA) are not found in other vertebrate genomes but are present in all cichlid genomes. They also cluster genomically with two other highly expressed tooth genes (odam, scpp5) that exhibit conserved expression during vertebrate odontogenesis. Unk and rpfA were confirmed via in situ hybridization to be expressed in developing teeth of Astatotilapia burtoni. We then examined expression of the cluster's four genes in six evolutionarily independent and phylogenetically disparate cichlid species pairs each with a large- and a small-toothed species. Odam and unk commonly and scpp5 and rpfA always showed higher expression in larger-toothed cichlid jaws. Convergent trophic adaptations across cichlid diversity are associated with the repeated developmental deployment of this genomic cluster containing conserved and novel cichlid-specific genes.
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  • 7
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    Extracellular enzyme activity in the coastal upwelling system off Peru: a mesocosm experiment (2023)
    Copernicus Publications (EGU)
    Details
    Publication Date: 2024-02-07
    Description: The Peruvian upwelling system is a highly productive ecosystem with a large oxygen minimum zone (OMZ) close to the surface. In this work, we carried out a mesocosm experiment off Callao, Peru, with the addition of water masses from the regional OMZ collected at two different sites simulating two different upwelling scenarios. Here, we focus on the pelagic remineralization of organic matter by the extracellular enzyme activity of leucine aminopeptidase (LAP) and alkaline phosphatase activity (APA). After the addition of the OMZ water, dissolved inorganic nitrogen (N) was depleted, but the standing stock of phytoplankton was relatively high, even after N depletion (mostly 〉 4 µg chlorophyll a L−1). During the initial phase of the experiment, APA was 0.6 nmol L−1 h−1 even though the PO concentration was 〉 0.5 µmol L−1. Initially, the dissolved organic phosphorus (DOP) decreased, coinciding with an increase in the PO concentration that was probably linked to the APA. The LAP activity was very high, with most of the measurements in the range of 200–800 nmol L−1 h−1. This enzyme hydrolyzes terminal amino acids from larger molecules (e.g., peptides or proteins), and these high values are probably linked to the highly productive but N-limited coastal ecosystem. Moreover, the experiment took place during a rare coastal El Niño event with higher than normal surface temperatures, which could have affected enzyme activity. Using a nonparametric multidimensional scaling analysis (NMDS) with a generalized additive model (GAM), we found that biogeochemical variables (e.g., nutrient and chlorophyll-a concentrations) and phytoplankton and bacterial communities explained up to 64 % of the variability in APA. The bacterial community best explained the variability (34 %) in LAP. The high hydrolysis rates for this enzyme suggest that pelagic N remineralization, likely driven by the bacterial community, supported the high standing stock of primary producers in the mesocosms after N depletion.
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  • 8
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    Workshop on drilling the Nicaraguan lakes: bridging continents and oceans (NICA-BRIDGE) (2023)
    Copernicus Publications (EGU) | IODP
    Details
    Publication Date: 2024-02-07
    Description: An international, multidisciplinary research group is proposing the “NICA-BRIDGE” drilling project, within the framework of the International Continental Scientific Drilling Program (ICDP). The project goal is to conduct scientific drilling in Lake Nicaragua and Lake Managua (Nicaragua, Central America) to obtain long lacustrine sediment records to (a) extend the neotropical paleoclimate record back to the Pliocene, making it one of the longest continental tropical climate archives in the world, and to (b) provide geological data on the long-term complex interplay among tectonics, volcanism, sea-level dynamics, climate change, and biosphere. The lakes are the two largest in Central America, and they are located in a trench-parallel half graben that hosts the volcanic front, which developed during or prior to the Pliocene, as a consequence of subduction-related tectonic activity. The lakes are uniquely suited for multidisciplinary scientific investigation as their long, con- tinuous sediment records (several Myr) will facilitate the study of (1) terrestrial and marine basin development at the southern Central American margin, (2) alternating lacustrine and marine environments in response to tec- tonic and climatic changes, (3) the longest record of tropical climate proxies, (4) the evolution of (and transition between) the Miocene to Pliocene/Pleistocene and Pleistocene to present volcanic arcs, which were separated by slab rollback, (5) the significance of the lakes as hot spots for endemism, and (6) the Great American Biotic Interchange at this strategic location, i.e., the N–S and reverse migration of fauna after the land bridge between the Americas was established. The planned ICDP project offers an opportunity to explore these topics through continent-based seismolog- ical, volcanological, paleoclimatological, paleoecological, and paleoenvironmental studies, combined with an International Ocean Discovery Program (IODP) drill project to explore its oceanic continuation. In preparation of this drilling project, an ICDP workshop was held in Montelimar, Nicaragua, on 2–5 March 2020 to develop drilling strategies and refine scientific questions, objectives, and hypotheses. The workshop was organized and hosted by the principal investigators and the Instituto Nicaragüense de Estudios Territoriales (INETER), with funding from the ICDP. Forty-five researchers from 12 countries participated in the workshop, including representatives from ICDP. During the workshop, previous research data on the study lakes, including new recent surveys, were reviewed, and a three-phase strategy for the proposed research was developed. The aim of Phase 0 is to complement the pre-site surveys where we identified the need for further data. In Phase I, with ICDP support, we will obtain sediment cores ∼ 100 m long, which will allow us to investigate many of the scientific questions. Based on the data from those drill cores, coring locations will be identified for a future Phase II, which we envisage as a combined ICDP/IODP project to collect deep drill cores in the lakes and the offshore Sandino Basin in order to extend Phase I results to much deeper time. The Sandino Basin is the oceanic continuation of the depression in which the studied lakes are located, and complementary marine drilling will improve the understanding of the evolution of this complex margin.
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  • 9
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    Dynamics of hydrological and geomorphological processes in evaporite karst at the eastern Dead Sea – a multidisciplinary study (2021)
    Copernicus Publications (EGU)
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    Publication Date: 2024-02-07
    Description: Karst groundwater systems are characterized by the presence of multiple porosity types. Of these, subsurface conduits that facilitate concentrated, heterogeneous flow are challenging to resolve geologically and geophysically. This is especially the case in evaporite karst systems, such as those present on the shores of the Dead Sea, where rapid geomorphological changes are linked to a fall in base level by over 35 m since 1967. Here we combine field observations, remote-sensing analysis, and multiple geophysical surveying methods (shear wave reflection seismics, electrical resistivity tomography, ERT, self-potential, SP, and ground-penetrating radar, GPR) to investigate the nature of subsurface groundwater flow and its interaction with hypersaline Dead Sea water on the rapidly retreating eastern shoreline, near Ghor Al-Haditha in Jordan. Remote-sensing data highlight links between the evolution of surface stream channels fed by groundwater springs and the development of surface subsidence patterns over a 25-year period. ERT and SP data from the head of one groundwater-fed channel adjacent to the former lakeshore show anomalies that point to concentrated, multidirectional water flow in conduits located in the shallow subsurface (〈 25 m depth). ERT surveys further inland show anomalies that are coincident with the axis of a major depression and that we interpret as representing subsurface water flow. Low-frequency GPR surveys reveal the limit between unsaturated and saturated zones (〈 30 m depth) surrounding the main depression area. Shear wave seismic reflection data nearly 1 km further inland reveal buried paleochannels within alluvial fan deposits, which we interpret as pathways for groundwater flow from the main wadi in the area towards the springs feeding the surface streams. Finally, simulations of density-driven flow of hypersaline and undersaturated groundwaters in response to base-level fall perform realistically if they include the generation of karst conduits near the shoreline. The combined approaches lead to a refined conceptual model of the hydrological and geomorphological processes developed at this part of the Dead Sea, whereby matrix flow through the superficial aquifer inland transitions to conduit flow nearer the shore where evaporite deposits are encountered. These conduits play a key role in the development of springs, stream channels and subsidence across the study area.
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  • 10
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    A global compilation of diatom silica oxygen isotope records from lake sediment – trends and implications for climate reconstruction (2024)
    Copernicus Publications (EGU)
    Details
    Publication Date: 2024-05-28
    Description: Oxygen isotopes in biogenic silica (δ18OBSi) from lake sediments allow for quantitative reconstruction of past hydroclimate and proxy-model comparison in terrestrial environments. The signals of individual records have been attributed to different factors, such as air temperature (Tair), atmospheric circulation patterns, hydrological changes, and lake evaporation. While every lake has its own local set of drivers of δ18O variability, here we explore the extent to which regional or even global signals emerge from a series of paleoenvironmental records. This study provides a comprehensive compilation and combined statistical evaluation of the existing lake sediment δ18OBSi records, largely missing in other summary publications (i.e. PAGES network). For this purpose, we have identified and compiled 71 down-core records published to date and complemented these datasets with additional lake basin parameters (e.g. lake water residence time and catchment size) to best characterize the signal properties. Records feature widely different temporal coverage and resolution, ranging from decadal-scale records covering the past 150 years to records with multi-millennial-scale resolution spanning glacial–interglacial cycles. The best coverage in number of records (N = 37) and data points (N = 2112) is available for Northern Hemispheric (NH) extratropical regions throughout the Holocene (roughly corresponding to Marine Isotope Stage 1; MIS 1). To address the different variabilities and temporal offsets, records were brought to a common temporal resolution by binning and subsequently filtered for hydrologically open lakes with lake water residence times 〈 100 years. For mid- to high-latitude (〉 45° N) lakes, we find common δ18OBSi patterns among the lake records during both the Holocene and Common Era (CE). These include maxima and minima corresponding to known climate episodes, such as the Holocene Thermal Maximum (HTM), Neoglacial Cooling, Medieval Climate Anomaly (MCA) and the Little Ice Age (LIA). These patterns are in line with long-term air temperature changes supported by previously published climate reconstructions from other archives, as well as Holocene summer insolation changes. In conclusion, oxygen isotope records from NH extratropical lake sediments feature a common climate signal at centennial (for CE) and millennial (for Holocene) timescales despite stemming from different lakes in different geographic locations and hence constitute a valuable proxy for past climate reconstructions.
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