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  • 2020-2024  (34)
  • 2015-2019  (1,537)
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  • 1
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    PANGAEA
    In:  Supplement to: Wong, Juliet M; Kozal, Logan C; Leach, Terence S; Hoshijima, Umihiko; Hofmann, Gretchen E (2019): Transgenerational effects in an ecological context: Conditioning of adult sea urchins to upwelling conditions alters maternal provisioning and progeny phenotype. Journal of Experimental Marine Biology and Ecology, 517, 65-77, https://doi.org/10.1016/j.jembe.2019.04.006
    Publication Date: 2024-03-15
    Description: Transgenerational plasticity occurs when the conditions experienced by the parental generation influence the phenotype of their progeny. This may in turn affect progeny performance and physiological tolerance, providing a means by which organisms cope with rapid environmental change. We conditioned adult purple sea urchins, Strongylocentrotus purpuratus, to combined pCO2 and temperature conditions reflective of in situ conditions of their natural habitat, the benthos in kelp forests of nearshore California, and then assessed the performance of their progeny raised under different pCO2 levels. Adults were conditioned during gametogenesis to treatments that reflected static non-upwelling (~650 μatm pCO2, ~17 °C) and upwelling (~1300 μatm pCO2, ~13 °C) conditions. Following approximately 4 months of conditioning, the adults were spawned and embryos were raised under low pCO2 (~450 μatm pCO2) or high pCO2 (~1050 μatm pCO2) treatments to determine if differential maternal conditioning impacted the progeny response to a single abiotic stressor: pCO2. We examined the size, protein content, and lipid content of eggs from both sets of conditioned female urchins. Offspring were sampled at four stages of early development: hatched blastula, gastrula, prism, and echinopluteus. This resulted in four sets of offspring: (1) progeny from non-upwelling-conditioned mothers raised under low pCO2, (2) progeny from non-upwelling-conditioned mothers raised under high pCO2, (3) progeny from upwelling-conditioned mothers raised under low pCO2, and (4) progeny from upwelling-conditioned mothers raised under high pCO2. We then assessed the effects of maternal conditioning along with the effects of developmental pCO2 levels on body size of the progeny. Our results showed that differential maternal conditioning had no impact on average egg size, although non-upwelling females produced eggs that were more variable in size. Maternal conditioning did not affect protein content but did have a modest impact on egg lipid content. Developing embryos whose mothers were conditioned to simulated upwelling conditions (~1300 μatm pCO2, ~13 °C) were greater in body size, although this effect was no longer evident at the echinopluteus larval stage. Although maternal conditioning affected offspring body size, the pCO2 levels under which the embryos were raised did not. Overall, this laboratory study provides insight into how transgenerational effects may function in nature. The impacts of parental environmental history on progeny phenotype during early development have important implications regarding recruitment success and population-level effects.
    Keywords: Alkalinity, total; Alkalinity, total, standard deviation; Animalia; Aragonite saturation state; Aragonite saturation state, standard deviation; Area; Benthic animals; Benthos; Bicarbonate ion; Calcite saturation state; Calculated using CO2calc; Calculated using seacarb after Nisumaa et al. (2010); Carbon, inorganic, dissolved; Carbonate ion; Carbonate system computation flag; Carbon dioxide; Coast and continental shelf; Containers and aquaria (20-1000 L or 〈 1 m**2); Development; Diameter; Echinodermata; EXP; Experiment; Fugacity of carbon dioxide (water) at sea surface temperature (wet air); Growth/Morphology; Identification; Laboratory experiment; Length; Lipids per individual; North Pacific; OA-ICC; Ocean Acidification International Coordination Centre; Other studied parameter or process; Partial pressure of carbon dioxide, standard deviation; Partial pressure of carbon dioxide (water) at sea surface temperature (wet air); pH; pH, standard deviation; Phospholipids per individual; Plate; Potentiometric titration; Proteins per individual; Registration number of species; Replicate; Reproduction; Salinity; Salinity, standard deviation; Sample ID; Santa_Barbara_OA; Single species; Species; Spectrophotometric; Sterols per egg; Strongylocentrotus purpuratus; Temperate; Temperature; Temperature, water; Temperature, water, standard deviation; Treatment; Triacylglycerols per egg; Type; Uniform resource locator/link to reference
    Type: Dataset
    Format: text/tab-separated-values, 114403 data points
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  • 2
    Publication Date: 2024-03-15
    Description: Acidification-induced changes in neurological function have been documented in several tropical marine fishes. Here, we investigate whether similar patterns of neurological impacts are observed in a temperate Pacific fish that naturally experiences regular and often large shifts in environmental pH/pCO2. In two laboratory experiments, we tested the effect of acidification, as well as pH/pCO2 variability, on gene expression in the brain tissue of a common temperate kelp forest/estuarine fish, Embiotoca jacksoni. Experiment 1 employed static pH treatments (target pH = 7.85/7.30), while Experiment 2 incorporated two variable treatments that oscillated around corresponding static treatments with the same mean (target pH = 7.85/7.70) in an eight-day cycle (amplitude ± 0.15). We found that patterns of global gene expression differed across pH level treatments. Additionally, we identified differential expression of specific genes and enrichment of specific gene sets (GSEA) in comparisons of static pH treatments and in comparisons of static and variable pH treatments of the same mean pH. Importantly, we found that pH/pCO2 variability decreased the number of differentially expressed genes detected between high and low pH treatments, and that inter-individual variability in gene expression was greater in variable treatments than static treatments. These results provide important confirmation of neurological impacts of acidification in a temperate fish species and, critically, that natural environmental variability may mediate the impacts of ocean acidification.
    Keywords: Alkalinity, total; Alkalinity, total, standard deviation; Animalia; Aragonite saturation state; Aragonite saturation state, standard deviation; Bicarbonate ion; Bicarbonate ion, standard deviation; Calcite saturation state; Calcite saturation state, standard deviation; Calculated using seacarb after Nisumaa et al. (2010); Calculated using seacarb after Orr et al. (2018); Carbon, inorganic, dissolved; Carbon, inorganic, dissolved, standard deviation; Carbonate ion; Carbonate ion, standard deviation; Carbonate system computation flag; Carbon dioxide; Carbon dioxide, standard deviation; Chordata; Coast and continental shelf; Containers and aquaria (20-1000 L or 〈 1 m**2); Embiotoca jacksoni; Experiment; Fugacity of carbon dioxide (water) at sea surface temperature (wet air); Fugacity of carbon dioxide in seawater, standard deviation; Gene expression (incl. proteomics); Laboratory experiment; Nekton; North Pacific; OA-ICC; Ocean Acidification International Coordination Centre; Other; Partial pressure of carbon dioxide, standard deviation; Partial pressure of carbon dioxide (water) at sea surface temperature (wet air); Pelagos; pH; pH, standard deviation; Salinity; Salinity, standard deviation; Single species; Species, unique identification; Species, unique identification (Semantic URI); Species, unique identification (URI); Temperate; Temperature, water; Temperature, water, standard deviation; Treatment; Type
    Type: Dataset
    Format: text/tab-separated-values, 245 data points
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  • 3
    Publication Date: 2024-03-20
    Keywords: Alkalinity, total; Alkalinity, total, standard deviation; Animalia; Aragonite saturation state; Aragonite saturation state, standard deviation; Bicarbonate ion; Bicarbonate ion, standard deviation; Calcite saturation state; Calcite saturation state, standard deviation; Calculated using CO2SYS; Calculated using seacarb after Nisumaa et al. (2010); Calculated using seacarb after Orr et al. (2018); Carbon, inorganic, dissolved; Carbon, inorganic, dissolved, standard deviation; Carbonate ion; Carbonate ion, standard deviation; Carbonate system computation flag; Carbon dioxide; Carbon dioxide, standard deviation; Chordata; Citrate synthase activity, unit per protein mass; Citrate synthase activity/lactate dehydrogenase activity; Citrate synthase activity per fresh mass; Coast and continental shelf; Containers and aquaria (20-1000 L or 〈 1 m**2); EXP; Experiment; Fish, standard length; Fish, total length; Fugacity of carbon dioxide (water) at sea surface temperature (wet air); Fugacity of carbon dioxide in seawater, standard deviation; Growth/Morphology; Identification; Laboratory experiment; Lactate dehydrogenase; Lactate dehydrogenase activity, unit per protein mass; Mass; Nekton; North Pacific; OA-ICC; Ocean Acidification International Coordination Centre; Other metabolic rates; Oxygen; Oxygen, dissolved; Oxygen, dissolved, standard deviation; Partial pressure of carbon dioxide, standard deviation; Partial pressure of carbon dioxide (water) at sea surface temperature (wet air); Pelagos; pH; pH, standard deviation; Position; Potentiometric titration; Registration number of species; Salinity; Sebastes mystinus; Single species; Species; Spectrophotometric; Stillwater_Cove; Temperate; Temperature, water; Temperature, water, standard deviation; Time point, descriptive; Treatment; Type; Uniform resource locator/link to reference
    Type: Dataset
    Format: text/tab-separated-values, 5083 data points
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  • 4
    Publication Date: 2024-04-20
    Description: To support local to regional climate change mitigation and adaptation actions, this spatial dataset prioritizes forestlands for preservation across Oregon, United States. The urgent need for climate change mitigation and adaptation actions has led to efforts to protect 30% of land area by 2030 (30x30) and 50% by 2050 (50x50). A key aspect of these efforts is strategically prioritizing lands for new protection, so they most effectively protect climate and biodiversity. Oregon has among the most carbon-rich forests on the planet, yet only about 10% of it's forests are currently protected, which is lower than any other state in the western United States. We therefore developed and applied a quantitative forest preservation priority ranking system that incorporated existing statewide spatial datasets related to forest carbon, biodiversity, and climate change resilience. Specifically, this approach utilized estimates of (1) tree aboveground carbon stocks, (2) tree, amphibian, bird, mammal, and reptile species richness, and (3) climate change resilience derived from metrics of topoclimatic diversity and landscape connectivity. Input datasets reflect contemporary (2000-2020) forest conditions and were re-gridded to a common 30 m x 30 m spatial resolution. Each forest patch (i.e., a 30 x 30 m grid cell) was ranked relative to others in its ecoregion based on carbon, biodiversity, and/or resilience metrics (i.e., four prioritization scenarios). The extent of currently protected (GAP 1 or 2; IUCN Ia-VI) forestlands was determined for each ecoregion and then the highest-ranked unprotected forestlands were identified that could be preserved to meet the 30x30 and 50x50 targets using each prioritization scenario. This spatial dataset therefore identifies the locations of forestlands that could be strategically preserved to meet the 30x30 and 50x50 targets as prioritized using each of the four scenarios. Each raster covers forestlands across Oregon at 30 m x 30 m spatial resolution and is provided in GeoTiff format using an Albers Equal Area projection. These spatial data were produced by Law et al. (2022) and support efforts to preserve Oregon's forests for climate change mitigation and adaptation.
    Keywords: 30x30; 50x50; Binary Object; Binary Object (File Size); Binary Object (MD5 Hash); Binary Object (Media Type); Biodiversity; Carbon; climate change adaptation; climate change mitigation; global change; protected areas; spatial analysis
    Type: Dataset
    Format: text/tab-separated-values, 8 data points
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  • 5
    Publication Date: 2024-04-20
    Description: To support local to international actions on climate change mitigation and biodiversity conservation, this spatial dataset prioritizes forestlands for preservation in the Western United States. The need for joint climate change mitigation and biodiversity conservation has led to efforts to protect 30% of land area by 2030 (30x30) and 50% by 2050 (50x50). A crucial aspects of these efforts is prioritizing lands for new protection so they best achieve climate and biodiversity goals. We developed and applied a quantitative forest preservation priority ranking (PPR) system that incorporated existing geospatial datasets related to forest carbon, biodiversity, and future vulnerabilities to climate change across the Western United States. Specifically, the forest PPR system incorporated estimates of (1) current forest carbon stocks, (2) near-term forest carbon accumulation, (3) terrestrial vertebrate species richness by taxa, (4) tree species richness, and (5) near-term forest vulnerability to increasing mortality rates from drought or fire. Input datasets were re-gridded to a common 1 x 1 km (1 km2) spatial resolution and reflect contemporary (2000-2020) and near-future (2020-2050) forest conditions, with near-future conditions derived using land surface simulations from the Community Land Model (CLM 4.5). We applied the forest PPR system such that each patch of forest (i.e., a 1 km2 grid cell) was ranked relative to others in its ecoregion based on metrics of carbon and/or biodiversity both with and without considering future vulnerabilities (i.e., six scenarios). We assessed the extent of forestlands that are currently protected (GAP 1 or 2; IUCN Ia-VI) and then identified the highest-ranked unprotected forestlands that could be preserved to meet the 30x30 and 50x50 targets using each prioritization scenario. This spatial dataset thus includes the locations of forestlands that could be strategically preserved to meet the 30x30 and 50x50 targets as prioritized using six scenarios. Each raster is provided at 1 km2 resolution in an Albers Equal Area Projection (EPSG 9822) and covers forestlands that occur across the 11 contiguous western states (i.e., Arizona, California, Colorado, Idaho, Montana, Nevada, New Mexico, Oregon, Utah, Washington, and Wyoming). Raster files are in GeoTiff format. These spatial data were produced as part of Law et al. (2021) and support cross-scale efforts to preserve forests for climate change mitigation and biodiversity conservation.
    Keywords: 30x30; 50x50; Binary Object; Binary Object (File Size); Binary Object (MD5 Hash); Binary Object (Media Type); Biodiversity; Carbon; climate change mitigation; File content; global change; protected areas; spatial analysis; species richness
    Type: Dataset
    Format: text/tab-separated-values, 24 data points
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  • 6
    Publication Date: 2016-05-19
    Print ISSN: 1529-2908
    Electronic ISSN: 1529-2916
    Topics: Biology , Medicine
    Published by Springer Nature
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  • 7
    Publication Date: 2017-04-04
    Description: We develop a 3D geological modelling procedure supported by the combination of helicopter time-domain electromagnetic data, seismic reflection data, and water well records for the Spiritwood buried valley aquifer system in Manitoba, Canada. Our procedure is an innovative hybrid of knowledge-driven and data-driven schemes that provides a clear protocol for incorporating different types of geophysical data into a 3D stratigraphic model framework. The limited spatial density of water well bedrock observations precludes detection of the buried valley bedrock topography and renders the water well records alone inadequate for accurate hydrogeological model building. The expert interpretation of the geophysical data allows for leveraging of a spatially extensive dataset with rich information content that would be otherwise difficult to utilize for lithostratigraphic classification.
    Description: Published
    Description: Tu PA1 07
    Description: 7A. Geofisica di esplorazione
    Description: N/A or not JCR
    Description: open
    Keywords: Hydrogeological modeling, 3D modeling, airborne electromagnetic; Cognitive modelling ; 04. Solid Earth::04.02. Exploration geophysics::04.02.99. General or miscellaneous ; 04. Solid Earth::04.04. Geology::04.04.99. General or miscellaneous ; 05. General::05.01. Computational geophysics::05.01.01. Data processing ; 05. General::05.01. Computational geophysics::05.01.03. Inverse methods ; 05. General::05.01. Computational geophysics::05.01.05. Algorithms and implementation
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Type: article
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  • 8
    Publication Date: 2017-11-21
    Description: In glaciated terrain, buried valleys often host aquifers that are significant groundwater resources. However, given the range of scales, spatial complexity and depth of burial, buried valleys often remain undetected or insufficiently mapped. Accurate and thorough mapping of bedrock topography is a crucial step in detecting and delineating buried valleys and understanding formative valley processes. We develop a bedrock mapping procedure supported by the combination of seismic reflection data and helicopter time-domain electromagnetic data with water well records for the Spiritwood buried valley aquifer system in Manitoba, Canada. The limited spatial density of water well bedrock observations precludes complete depiction of the buried valley bedrock topography and renders the water well records alone inadequate for accurate hydrogeological model building. Instead, we leverage the complementary strengths of seismic reflection and airborne electromagnetic data for accurate local detection of the sediment-bedrock interface and for spatially extensive coverage, respectively. Seismic reflection data are used to define buried valley morphology in cross-section beneath survey lines distributed over a regional area. A 3D model of electrical conductivity is derived from inversion of the airborne electromagnetic data and used to extrapolate buried valley morphology over the entire survey area. A spatially variable assignment of the electrical conductivity at the bedrock surface is applied to different features of the buried valley morphology identified in the seismic cross-sections. Electrical conductivity is then used to guide construction of buried valley shapes between seismic sections. The 3D locus of points defining each morphological valley feature is constructed using a path optimization routine that utilizes deviation from the assigned electrical conductivities as the cost function. Our resulting map represents a bedrock surface of unprecedented detailwith more complexity than has been suggested by previous investigations. Our procedure is largely data-driven with an adaptable degree of expert user input that provides a clear protocol for incorporating different types of geophysical data into the bedrock mapping procedure.
    Description: Published
    Description: 191-201
    Description: 2TR. Ricostruzione e modellazione della struttura crostale
    Description: JCR Journal
    Keywords: buried valley geology ; bedrock mapping ; airborne geophysics ; ELECTROMAGNETIC METHODS ; SEISMIC REFLACTION ; hydrogeophysics ; 04.02. Exploration geophysics
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Type: article
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  • 9
    Publication Date: 2023-06-17
    Description: Fluvial aggradation and incision are often linked to Quaternary climate cycles, but it usually remains unclear whether variations in runoff or sediment supply or both drive channel response to climate variability. Here we quantify sediment supply with paleo‐denudation rates and provide geochronological constraints on aggradation and incision from the Sfakia and Elafonisi alluvial‐fan sequences in Crete, Greece. We report seven optically stimulated luminescence and ten radiocarbon ages, eight 10Be and eight 36Cl denudation rates from modern channel and terrace sediments. For five samples, 10Be and 36Cl were measured on the same sample by measuring 10Be on chert and 36Cl on calcite. Results indicate relatively steady denudation rates throughout the past 80 kyr, but the aggradation and incision history indicates a link with climate shifts. At the Elafonisi fan, we identify four periods of aggradation coinciding with Marine Isotope Stages (MIS) 2, 4, 5a/b, and likely 6, and three periods of incision coinciding with MIS 1, 3, and likely 5e. At the Sfakia fan, rapid aggradation occurred during MIS 2 and 4, followed by incision during MIS 1. Nearby climate and vegetation records show that MIS 2, 4, and 6 stadials were characterized by cold and dry climates with sparse vegetation, whereas forest cover and more humid conditions prevailed during MIS 1, 3, and 5. Our data thus suggest that past changes in climate had little effect on landscape‐wide denudation rates but exerted a strong control on the aggradation–incision behaviour of alluvial channels on Crete. During glacial stages, we attribute aggradation to hillslope sediment release promoted by reduced vegetation cover and decreased runoff; conversely, incision occurred during relatively warm and wet stages due to increased runoff. In this landscape, past hydroclimate variations outcompeted changes in sediment supply as the primary driver of alluvial deposition and incision.
    Description: We investigate the impact of Quaternary climate cycles on denudation rates and fluvial aggradation and incision on Crete, Greece. We find that alluvial channels aggrade during cold and dry periods and incise during warm and wet stages, despite relatively steady denudational supply from the hillslopes. We conclude that, in this landscape, past hydroclimate variations outcompeted changes in sediment supply as the primary driver of alluvial deposition and incision.
    Description: Swiss National Science Foundation http://dx.doi.org/10.13039/501100001711
    Description: https://doi.org/10.5880/GFZ.3.3.2022.002
    Keywords: ddc:551.3 ; alluvial fan ; cosmogenic nuclides ; fluvial aggradation ; incision ; paleo‐denudation rates ; post‐burial production ; sediment supply
    Language: English
    Type: doc-type:article
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  • 10
    Publication Date: 2023-11-18
    Description: Cyclostratigraphy and astrochronology are now at the forefront of geologic timekeeping. While this technique heavily relies on the accuracy of astronomical calculations, solar system chaos limits how far back astronomical calculations can be performed with confidence. High‐resolution paleoclimate records with Milankovitch imprints now allow reversing the traditional cyclostratigraphic approach: Middle Eocene drift sediments from Newfoundland Ridge are well‐suited for this purpose, due to high sedimentation rates and distinct lithological cycles. Per contra, the stratigraphies of Integrated Ocean Drilling Program Sites U1408–U1410 are highly complex with several hiatuses. Here, we built a two‐site composite and constructed a conservative age‐depth model to provide a reliable chronology for this rhythmic, highly resolved (〈1 kyr) sedimentary archive. Astronomical components (g‐terms and precession constant) are extracted from proxy time‐series using two different techniques, producing consistent results. We find astronomical frequencies up to 4% lower than reported in astronomical solution La04. This solution, however, was smoothed over 20‐Myr intervals, and our results therefore provide constraints on g‐term variability on shorter, million‐year timescales. We also report first evidence that the g〈sub〉4〈/sub〉–g〈sub〉3〈/sub〉 “grand eccentricity cycle” may have had a 1.2‐Myr period around 41 Ma, contrary to its 2.4‐Myr periodicity today. Our median precession constant estimate (51.28 ± 0.56″/year) confirms earlier indicators of a relatively low rate of tidal dissipation in the Paleogene. Newfoundland Ridge drift sediments thus enable a reliable reconstruction of astronomical components at the limit of validity of current astronomical calculations, extracted from geologic data, providing a new target for the next generation of astronomical calculations.
    Description: Plain Language Summary: The traditional cyclostratigraphic approach is to align and correlate a geologic depth‐series with an astronomical solution. However, the chaotic nature of the Solar System prevents astronomers from precisely calculating planetary motions beyond 40–50 million years ago. This in turn limits the options for geologists to use the resulting oscillations in Earth's climate system as a metronome for determining geologic time. In this study, we reversed the cyclostratigraphic approach and used the highly rhythmical sedimentary deposits from Newfoundland Ridge (North Atlantic) to back‐calculate planetary motions at ∼41 million years ago. The superior quality of the Newfoundland Ridge geoarchive originates from the combination of relatively high sedimentation rates (∼4 cm/kyr) and the time‐continuous character of our two‐site composite record between 39.5 and 42.8 million years ago. In this work, we had to first overcome considerable challenges in reconstructing the timing of sediment deposition, which we did with highly resolved geochemical measurements from two sites. We then were able to extract information on the Earth's planetary motion and on the Earth‐Moon interactions. These astronomical reconstructions based on geological data can now be used by astronomers to describe the evolution of the solar system further back in time than was previously possible.
    Description: Key Points: A new precession‐based cyclostratigraphy for the middle Eocene intervals of IODP Sites U1408 and U1410. Variability in astronomical fundamental frequencies (g‐terms) on million‐year timescales is larger than previously assumed. Our precession constant estimate for 41 Ma (51.28 ± 0.56″/year) confirms earlier indicators of slower tidal dissipation in the Paleogene.
    Description: National Science Foundation http://dx.doi.org/10.13039/100000001
    Description: University of California http://dx.doi.org/10.13039/100005595
    Description: Belgian American Educational Foundation http://dx.doi.org/10.13039/100001491
    Description: https://paloz.marum.de/AstroComputation/index.html
    Description: https://paloz.marum.de/confluence/display/ESPUBLIC/NAFF
    Keywords: ddc:551 ; North Atlantic ; Eocene ; cyclostratigraphy ; astrochronology
    Language: English
    Type: doc-type:article
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