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  • 2020-2023  (34)
  • 1965-1969  (574)
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  • 11
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    The Future of Aquatic Commons: Recommendations Based on an Evaluation of Business Models and Stakeholder Consultation (2020)
    Details
    Publication Date: 2022-05-25
    Description: Aquatic Commons is a digital repository established by the International Association of Aquatic and Marine Libraries and Information Centers (IAMSLIC) in 2007 to provide a solution for member institutions that didn’t have an institutional repository. It is directed by the Aquatic Commons Board, and submissions are reviewed by an editorial team. Originally hosted by the Florida Center for Library Automation (FCLA), the repository was moved to the International Oceanographic Data and Information Exchange (IODE) in 2011 when FCLA faced major budgetary issues. Aquatic Commons has grown to more than 20,000 publications from over 90 institutions in all areas of the aquatic sciences, including freshwater, fisheries, and oceanography, yet support for the repository has not kept pace with developmental needs. To ensure a sustainable future, the Aquatic Commons Board determined it was necessary to conduct an evaluation and created the Aquatic Commons Evaluation (ACE) team. The team identified and compared four potential business models: 1a) maintain Aquatic Commons as a separate repository but upgrade the EPrints software; 1b) maintain Aquatic Commons as a separate repository but migrate to DSpace software; 2) migrate content to the existing IODE OceanDocs repository but retain Aquatic Commons identity by having a separate DSpace community; and 3) partner with IODE and possibly the Aquatic Science and Fisheries Abstracts (ASFA) to create an entirely new repository with content merged from Aquatic Commons and OceanDocs. The team consulted with potential partners (e.g. ASFA and IODE) and ran a survey to elicit feedback from members, depositors, and other stakeholders about the models, addressing issues of thematic scope, branding, software, technical requirements, workflows, and training. At the 2019 conference, the team presented a recommendation based on the evaluation in order to initiate a roadmap for the Aquatic Commons.
    Keywords: Aquatic Commons, OceanDocs, IODE, Open Access, DSpace, Eprints, Survey
    Repository Name: Woods Hole Open Access Server
    Type: Article
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  • 12
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    Prevalence and intensity of oyster parasite species following a reef restoration experiment in Quonochontaug Pond, Rhode Island, USA from 2017-2020 (2022)
    Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu
    Details
    Publication Date: 2022-11-23
    Description: Dataset: Oyster genetic identity and parasite community structure
    Description: Intraspecific variation in host susceptibility to individual parasite species is common, yet how these effects scale to mediate the structure of diverse parasite communities in nature is not as well understood. To address this knowledge gap, we tested how host genetic identity affects parasite communities on restored reefs seeded with juvenile oysters from different sources – a regional commercial hatchery or one of two wild progenitor lines. We assessed the prevalence and intensity of three micro- and two macro-parasite species for four years following restoration. Despite the spatial proximity of restored reefs, oyster source identity strongly predicted parasite community prevalence across all years, with sources varying in their relative susceptibility to different parasites. Oyster seed source also predicted reef-level parasite intensities across space and through time. Our results highlight that host intraspecific variation can shape parasite community structure in natural systems, and reinforce the importance of considering source identity and diversity in restoration design. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/883570
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1652320, U.S. Fish & Wildlife Service Wildlife and Sport Fish Restoration Program (USFWS WSFR) WSFR F20AF00145
    Keywords: Crassostrea virginica ; host-parasite ; habitat restoration ; genetic variation
    Repository Name: Woods Hole Open Access Server
    Type: Dataset
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  • 13
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    Temperature from seagrass wasting disease mesocosm experiments at Bodega Marine Laboratory in June-July 2015 (2022)
    Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu
    Details
    Publication Date: 2022-11-22
    Description: Dataset: Mesocosm warming experiment temperature
    Description: This dataset includes seawater temperature measurements from mesocosms. Data were collected as part of a mesocosm study at the Bodega Marine Laboratory examining the independent and interactive effects of warming, host genotypic identity, and host genotypic diversity on the prevalence and intensity of infections of seagrass by the wasting disease parasite Labyrinthula zosterae. These data were plotted in Schenck et al (2022) as Figure S1. And Bois et al., 2021 as Figure 1. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/883037
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1652320
    Keywords: climate change ; host-parasite ; microbiome ; seagrass ; wasting disease
    Repository Name: Woods Hole Open Access Server
    Type: Dataset
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  • 14
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    Quantitative PCR cell count estimates from samples of DNA extracted from seagrass wasting disease parasite, Labyrinthula zosterae from wasting disease mesocosm experiments at Bodega Marine Laboratory in July-Sept of 2015 (2022)
    Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu
    Details
    Publication Date: 2022-11-22
    Description: Dataset: Mesocosm warming experiment quantitative PCR inhibition controls
    Description: This data set includes quantitative PCR cell count estimates from samples of DNA extracted from seagrass wasting disease parasite, Labyrinthula zosterae, cultures of known cell concentrations run with and without DNA extracted from seagrass, Zostera marina, tissue samples to test for quantitative PCR signal inhibition. Seagrass tissue samples were collected as part of a mesocosm study at the Bodega Marine Laboratory examining the independent and interactive effects of warming, host genotypic identity, and host genotypic diversity on the prevalence and intensity of infections of seagrass by the wasting disease parasite L. zosterae. These data were plotted in Schenck et al (2022) as Figure S6. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/883055
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1652320
    Keywords: climate change ; host-parasite ; microbiome ; seagrass ; wasting disease
    Repository Name: Woods Hole Open Access Server
    Type: Dataset
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  • 15
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    Microbial taxa (amplicon sequence variant or ASV) statistical analyses for two seagrass genotypes from wasting disease mesocosm experiments at Bodega Marine Laboratory in July-Sept of 2015 (2022)
    Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu
    Details
    Publication Date: 2022-11-22
    Description: Dataset: Mesocosm microbial analyses results
    Description: This dataset includes outputs from statistical analyses of differences in microbial taxa (amplicon sequence variant or ASV) abundance among two groups of seagrass, Zostera marina, genotypes: those that showed reduced Labyrinthula zosterae parasites when warmed vs those that showed increased L. zosterae parasites when warmed; and two seawater temperature treatments: ambient or elevated +3.2oC. Data were collected as part of a mesocosm study at the Bodega Marine Laboratory examining the independent and interactive effects of warming, host genotypic identity, and host genotypic diversity on the prevalence and intensity of infections of seagrass by the wasting disease parasite L. zosterae. These data were published in Schenck et al (2022). Related sequence data from this experiment is accessible from the National Center for Biotechnology Information (NCBI) BioProject PRJNA716355. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/883070
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1652320
    Keywords: climate change ; host-parasite ; microbiome ; seagrass ; wasting disease
    Repository Name: Woods Hole Open Access Server
    Type: Dataset
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  • 16
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    Seagrass metrics from from seagrass wasting disease mesocosm experiments conducted at Bodega Marine Laboratory from July-September 2015 (2022)
    Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu
    Details
    Publication Date: 2022-11-22
    Description: Dataset: Mesocosm warming experiment seagrass metrics
    Description: This dataset includes seagrass metrics (diversity, biomass, growth, and wasting disease) from mesocosm experiments at Bodega Marine Laboratory in July-September 2015. Data were collected as part of a mesocosm study at the Bodega Marine Laboratory examining the independent and interactive effects of warming, host genotypic identity, and host genotypic diversity on the prevalence and intensity of infections of seagrass by the wasting disease parasite Labyrinthula zosterae. These data were published in Schenck et al (2022). For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/879749
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1652320
    Keywords: Zostera marina ; microbiome ; seagrass wasting disease ; host-parasite ; seagrass ; wasting disease
    Repository Name: Woods Hole Open Access Server
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  • 17
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    Wasting disease prevalence and severity and seagrass length and density based on subpopulations of Zostera marina on the North Shore of Massachusetts surveyed in July and September 2016 (2022)
    Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu
    Details
    Publication Date: 2022-10-31
    Description: Dataset: Wasting Disease and Seagrass Field Experiment
    Description: This dataset includes wasting disease infection prevalence and severity in four Zostera marina subpopulations located along a 30 kilometer stretch of coastline on the North shore of Massachusetts. Surveys of subpopulations were conducted in July and September 2016. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/851122
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1652320
    Keywords: Labyrinthula zosterae ; Parasite ; Seagrass ; Wasting disease ; Zostera marina
    Repository Name: Woods Hole Open Access Server
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  • 18
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    Database of oyster mortality based on body size treatment (2020)
    Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu
    Details
    Publication Date: 2022-10-31
    Description: Dataset: Oyster mortality
    Description: Database of oyster mortality based on body size treatment For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/804502
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1652320, Australian Research Council (ARC) FT140100322
    Keywords: Oyster ; Intra-specific ; Phenotypic diversity ; Predation ; Survivorship
    Repository Name: Woods Hole Open Access Server
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  • 19
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    Seawater temperature and salinity of mesocosms and a field location collected while conducting experiments on seagrass in Nahant, Massachusetts (2022)
    Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu
    Details
    Publication Date: 2022-10-31
    Description: Dataset: Seawater Temperature and Salinity
    Description: This dataset includes seawater temperature and salinity measurements from mesocosms and from a field location at Curlew Beach. Data were collected as part of a study examining seagrass responses to Labyrinthula zosterae conducted in a greenhouse at Northeastern University Marine Science Center in Nahant, Massachusetts from May to August 2016. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/851059
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1652320
    Keywords: Labyrinthula zosterae ; Parasite ; Seagrass ; Wasting disease ; Zostera marina
    Repository Name: Woods Hole Open Access Server
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  • 20
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    Seagrass responses to Labyrinthula zosterae inoculation base on a subpopulation from mesocosm experiments conducted in Nahant, Massachusetts (2022)
    Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu
    Details
    Publication Date: 2022-10-31
    Description: Dataset: Seagrass Responses from Mesocosm Experiment
    Description: This dataset includes seagrass responses to Labyrinthula zosterae inoculation base on a subpopulation from mesocsm experiments conducted in a greenhouse at Northeastern University Marine Science Center in Nahant, Massachusetts from May to August 2016. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/851047
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1652320
    Keywords: Labyrinthula zosterae ; Parasite ; Seagrass ; Wasting disease ; Zostera marina
    Repository Name: Woods Hole Open Access Server
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