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  • 1
    Publication Date: 2024-04-05
    Description: This special issue reviews state-of-the-art approaches to the biophysical roots of cognition. These approaches appeal to the notion that cognitive capacities serve to optimize responses to changing external conditions. Crucially, this optimisation rests on the ability to predict changes in the environment, thus allowing organisms to respond pre-emptively to changes before their onset. The biophysical mechanisms that underwrite these cognitive capacities remain largely unknown; although a number of hypotheses has been advanced in systems neuroscience, biophysics and other disciplines. These hypotheses converge on the intersection of thermodynamic and information-theoretic formulations of self-organization in the brain. The latter perspective emerged when Shannon’s theory of message transmission in communication systems was used to characterise message passing between neurons. In its subsequent incarnations, the information theory approach has been integrated into computational neuroscience and the Bayesian brain framework. The thermodynamic formulation rests on a view of the brain as an aggregation of stochastic microprocessors (neurons), with subsequent appeal to the constructs of statistical mechanics and thermodynamics. In particular, the use of ensemble dynamics to elucidate the relationship between micro-scale parameters and those of the macro-scale aggregation (the brain). In general, the thermodynamic approach treats the brain as a dissipative system and seeks to represent the development and functioning of cognitive mechanisms as collective capacities that emerge in the course of self-organization. Its explicanda include energy efficiency; enabling progressively more complex cognitive operations such as long-term prediction and anticipatory planning. A cardinal example of the Bayesian brain approach is the free energy principle that explains self-organizing dynamics in the brain in terms of its predictive capabilities – and selective sampling of sensory inputs that optimise variational free energy as a proxy for Bayesian model evidence. An example of thermodynamically grounded proposals, in this issue, associates self-organization with phase transitions in neuronal state-spaces; resulting in the formation of bounded neuronal assemblies (neuronal packets). This special issue seeks a discourse between thermodynamic and informational formulations of the self-organising and self-evidencing brain. For example, could minimization of thermodynamic free energy during the formation of neuronal packets underlie minimization of variational free energy?
    Keywords: RC321-571 ; Q1-390 ; consciousness ; understanding ; Markov blanket ; Hebbian assembly ; neuronal packet ; Bayesian brain ; thema EDItEUR::P Mathematics and Science::PS Biology, life sciences::PSA Life sciences: general issues::PSAN Neurosciences
    Language: English
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  • 2
    Publication Date: 2023-12-21
    Description: Immune molecules have evolved to distinguish “self “molecules from “non-self”, “altered self” and “danger” molecules. Recognition is mediated via interactions between pattern recognition receptor molecules (PPRs) and their ligands, which include hydrophobic and electrostatic interactions between amino acid residues on the PPRs and uncharged or charged groups on amino acid residues, sugar rings or DNA/RNA molecules. Recognition in innate immunity range from cases (C1q, mannin-binding protein etc) where recognition is orchestrated by interaction between many ligands with one receptor molecule, and density of interaction is necessary for strong specific recognition, distinct from weak non-specific binding, and cases such as TLRs and NLRs where recognition involves complexation of single receptor and ligand, followed by oligomerisation of the receptor molecule. The majority of PPR molecules bind and recognise a wide variety of ligands, e.g TLR4 recognises LPS (gram negative bacteria), Lipotechoic acid (gram positive bacteria), heat shock protein hsp60, respiratory syncytial virus fusion protein etc, molecules that are structurally dissimilar to each other. This indicates considerable flexibility in their binding domains (amino acid residue variations) and modes (hydrophobic and charged, direct or mediated via an adaptor molecule). However, in many cases there is a dearth of structural and molecular data available, required to delineate the mechanism of ligand binding underlining recognition in pathogen receptors in innate immunity. Insights into requirements of conformation, charge, surface etc in the recognition and function of innate immunity receptors and their activation pathways, based on current data can suggest valuable avenues for future work.
    Keywords: R5-920 ; RC581-607 ; HIV-1 ; host-pathogen interactions ; zebrafish model system ; innate immunity ; protein-protein interaction ; complement ; malaria ; pattern recognition ; bic Book Industry Communication::M Medicine
    Language: English
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  • 3
    Electronic Resource
    Electronic Resource
    [s.l.] : Nature Publishing Group
    Nature 174 (1954), S. 40-41 
    ISSN: 1476-4687
    Source: Nature Archives 1869 - 2009
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
    Notes: [Auszug] X-ray and differential thermal studies of some Indian bentonites and soils have yielded interesting results in this connexion. The samples studied are bentonites from (i) Kashmir, (ii) Nimlinadi and (iii) Barme, and black cotton soils from (iv) Satara and (v) Indore. The X-ray pattern of the clay ...
    Type of Medium: Electronic Resource
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  • 4
    Electronic Resource
    Electronic Resource
    [s.l.] : Nature Publishing Group
    Nature 170 (1952), S. 710-711 
    ISSN: 1476-4687
    Source: Nature Archives 1869 - 2009
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
    Notes: [Auszug] For a number of years we have been engaged in the study of the Friedel-Craft reaction with the view of preparing compounds of type II. We have already reported2 the synthesis of 4-methyl-4-carbethoxy-(p-methoxyphenyl)-cyclohexan-3-one (IV) by Friedel-Craft condensation between anisole and ...
    Type of Medium: Electronic Resource
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