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  • 11
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    Genetic population analysis of jinga shrimp (Metapenaeus affinis) in Persian Gulf (2021)
    Iranian Fisheries Science Research Institute | Tehran, Iran
    In:  http://aquaticcommons.org/id/eprint/25688 | 18721 | 2018-10-08 09:12:04 | 25688 | Iranian Fisheries Science Research Institute
    Details
    Publication Date: 2021-07-16
    Description: Jinga shrimp Metapenaeus affinis is one of the most important penaeide shrimp species in Persian Gulf that has the highest amount of shrimp catch after banana shrimp in Hormozgan province. Regarding the importance of Jinga shrimp in fisheries of this province, genetic diversity and population structure of this species was assessed for the first time by mitochondrial 16SrRNA sequencing. A number of 18 shrimps were collected from the regions of Bandar Abbas, Bushehr and Khuzestan (six samples each region). DNA Extraction was performed using phenolchloroform and by optimizing the PCR for amplification of 16SrRNA, the most suitable temperature for primer binding was 48 °C. Analysis of 18 sequenced samples including 486 aligned base pairs of 16SrRNA yielded 480 monomorphic loci, 6 polymorphic loci and 2 transitions. No insertions and deletions were observed. 9 haplotypes were identified from the 18 samples. Mean haplotype diversity in each region was recorded from 0.0 ± 0.0 (Bandar Abbas) to 0.333 ± 0.215 (Bushehr) and 0.333 ± 0.215 (Khuzestan), and mean nucleotide diversity from 0.0 ± 0.0 (Bandar Abbas) to 0.003 ± 0.003 (Bushehr) and 0.001 ± 0.001 (Khuzestan). Haplotype and nucleotide diversity of all samples were 0.608 ± 0.007 and 0.002 ± 0.003, respectively. The maximum amount of F- statistic parameter was 0.750 between samples of Bandar Abbas and Khuzestan and the minimum amount between Bushehr and Khuzestan (-0.105). At probability level of 0.05, population differentiation was significant between Bandar Abbas and two other regions of Bushehr and Khuzestan but not significant between regions of Bushehr and Khuzestan. Test of exact p values within population confirmed the difference of Bandar Abbas population from the two other populations. Phylogenetic trees showed the differentiation of Bandar Abbas population from the two other regions. The results of this study using mitochondrial 16SrRNA sequencing revealed that the Jinga shrimp population of Bandar Abbas is a differentiated and separated gene pool from the two other regions, and although the populations of Bushehr and Khuzestan seem not genetically separated, molecular diversity of this species is acceptable in these two regions.
    Keywords: Biology ; Fisheries ; Iran ; Persian Gulf ; Sequencing ; Population structure ; 16SrRNA ; Jinga shrimp ; Metapenaeus affinis
    Repository Name: AquaDocs
    Type: monograph
    Format: application/pdf
    Format: application/pdf
    Format: 60
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  • 12
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    Laboratories risks evaluation of Persian Gulf and Oman Sea Ecological Research Center (2021)
    Iranian Fisheries Science Research Institute | Tehran, Iran
    In:  http://aquaticcommons.org/id/eprint/25707 | 18721 | 2018-10-14 03:17:47 | 25707 | Iranian Fisheries Science Research Institute
    Details
    Publication Date: 2021-07-16
    Description: In this study, to assess and classify risks associated with working in the laboratories of Persian Gulf and Oman Sea Ecological Research Center, the method of "Failure Mode Effects Analysis" (FMEA) as well as some statistical methods were used. The results of the risk assessment in the 11 affiliated laboratories showed that the risk levels in all cases, except for benthos laboratory, could be evaluated as moderate or high and therefore appropriate corrective actions must be implemented. Based on the results of the Kruskal-Wallis tests both before and after the corrective actions, there were significant differences between the laboratories from the viewpoint of risk priority number (RPN). The post hoc tests showed the lowest risk levels for the benthose and histology laboratories, while the highest risks identified in the laboratory of instrumental analysis. The results of the classification of the laboratories using cluster analysis are largely similar to those of the posthoc tests. According to Mann-Whitney U test, only in the case of the samples preparation laboratory, significant differences between the values of the RPN before and after the corrective actions could be observed (p〉 0.05), however, the risk levels still remained high. In general it can be concluded that FMEA is an effective method for risk assessment in the research laboratories and appropriate statistical methods can also be used for complementary analysis.
    Keywords: Information Management ; Management ; Iran ; Risk assessment ; Persian Gulf and Oman Sea Ecological Research Center ; Risk priority number ; Failure Mode Effects Analysis ; Evaluation
    Repository Name: AquaDocs
    Type: monograph
    Format: application/pdf
    Format: application/pdf
    Format: 68
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  • 13
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    Assessment of dominant species food relation in habitats of commercial shrimp in Hormuzgan Province waters (Persian Gulf) (2021)
    Iranian Fisheries Science Research Institute | Tehran, Iran
    In:  http://aquaticcommons.org/id/eprint/25837 | 18721 | 2018-10-13 10:15:56 | 25837 | Iranian Fisheries Science Research Institute
    Details
    Publication Date: 2021-07-16
    Description: Shrimp is one of the most important aquatic animals,that have decreased their stocks in Hormozgan province, especially the eastern province . Evalution of food interaction in shrimp habitats (Estuaries of Tyab, Yek shabeh, Laft and Khouran) was studied with Ecopaht with Ecosim software (ver. 6.5) in Hormuzgan province. After entering the input components (Biomass,P/B and Q/B), model was balanced and outputs were extracted. Results of trophic levels, was close to previous research in these areas for all species in estuaries. Maximum of ecotrophic efficiency was belonged to phytoplankton and other preys that were observed in predator stomachs. Biological future of food web estimated to be threatened based on omnivore index of planktonivore groups. Maximum food competition between the four food models was estimated in detritivores communities in Laft estuary, that may be related to the low density of mangrove in this region. Khamir estuary ecosystem could be more stable, because each impacting group had its own separate ecological niche and special predation territory. key indices in each of four food models were related to phytoplankton communities, this key role has been demonstrated much better in Yek Shovy estuary than others. Future of commercial shrimp stocks will be expected to be in better condition in Khoran estuary compared to other three ones, due to selection of separate ecological niche by predators and High biomass of detritus in this estuary.
    Keywords: Biology ; Ecology ; Iran ; Persian Gulf ; Hormuzgan Province ; Ecopath ; Shrimp ; Habitats ; Estuary ; Assessment ; Dominant Species ; Food
    Repository Name: AquaDocs
    Type: monograph
    Format: application/pdf
    Format: application/pdf
    Format: 57
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  • 14
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    A study on distribution and biomass estimination of seaweeds in coastal and its islands (2021)
    In:  http://aquaticcommons.org/id/eprint/24744 | 18721 | 2018-08-04 17:03:15 | 24744 | Iranian Fisheries Science Research Institute
    Details
    Publication Date: 2021-07-15
    Description: Distribution and biomass of seaweeds in the Persian Gulf and its islands were assessed monthly during low tide from July 2001 to August 2003. Ten stations were defined in the study area and random spots along a transect vertical to the coastline were selected to carry out the sampling. Six stations were located in the coastal waters and four others were close to the islands. Samples were taken in quadrats 0.25 square meter in size (0.5mx0.5m). As a result, 77 species belonging to 4 division of seaweeds were identified. Rhodophyta was represented by 38 species, Chlorophyta had 21 species followed by 17 species of Phaeophyta and only I species of Cyanophyta. The highest and lowest seaweed diversity was seen around Larak Island and Michael station with 74 and 31 species respectively. Although some species such as Gracilaria corticata, Gelidiella acerosa, Laurencia snyderia, Colpomenia sinousa, Padina australis and Diciyosphaeria covernosa were abundant in all stations during the study, some species were absent from some stations. Thrbinaria conoiedes was only seen in Larak island, Spatoglassum variable and Steochospermum marginatum were present only in Larak and Qeshem islands, Codium papilatum and Ulva spp. were spotted only in Larak and Hormoz islands, and Sargassum ilicifolium was detected only in Bandar Lengeh, Shiyo, Larak and Qeshem islands. The maximum and minimum algal biomass (wet weight) was recorded in Bandar Lengeh with 1.058gram^2 and Qeshem island with 391gram'2 and there was significant difference between the two stations (P〈0.05). Also the maximum algal biomass was recorded in summer (1466gr.m^2) in Tahoneh-Gorzeh and the minimum biomass (130gram^2) in Qeshem islands. The highest biomass was recorded for the brown algae division (824gram^2) in Bandar Lengeh and the minimum biomass was seen for the green algae division (26gram^2) in Hormoz. and Qeshm islands. The maximum biomass was 755gram in summer for red algae, 1160gram^-2 in Spring for brown algae and 519gram^2 in Summer for green algae.
    Keywords: Biology ; Ecology ; Seaweeds ; Hormuzgan province ; Persian Gulf ; Larak island ; Qeshm Island ; Iran
    Repository Name: AquaDocs
    Type: article , TRUE
    Format: application/pdf
    Format: application/pdf
    Format: 59-68
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