ALBERT

Description: (1). During 2003 a total of 3,852 Metric Tonnes (MT) of fish was landed on Mahe, Praslin and La Digue by 405 fishing boats. 80.5% of the total catch was landed on Mahe alone. The total artisanal catch decreased by 1063 (MT) compared to 2002, whilst the number of boats operating increased by 31 over the same period (excluding sport fishing vessels). (2). The most important species groups landed (greater than 5% of the total catch) were carangues (33.6%), job (15.8%), bourgeois (9.1%), cordonier (6.6%), capitaine (6.1%), becune (6.0%), and maquereau doux (5.4%). Compared to 2002, there were notable increases in the relative importance of cordonier and bourgeois to the overall catch. (3). Peak landings occurred in November (463.7 MT) and the lowest catch was recorded in September (137.3 MT). The average monthly catch in 2003 was 321 (MT). (4). Slight seasonal variation in total catch was observed in 2003. The mean monthly catch during the months of May — October, inclusive; was 290.5 MT, compared to a mean montly catch of 318.1 MT during the months of December — March, inclusive. In contrast to the patterns observed in 2001 and 2002, the highest catches for carangues occurred in November rather than April. Catches of cordonnier continued to increase (254.7 MT) over the previous two years, with peak monthly catches coinciding with the peak spawning months for those species, namely October to December. (5). The percentage of the total artisanal catch taken by the small boat fishery (pirogues and outboards) was 28.3%, similar to the estimate obtained in 2002. Fishermen on foot landed 0.6% of the total artisanal catch, with octopus catches from this fishery totaling 21.3 MT in 2003. 5.4 MT of maquereau were landed by pirogues using beach seines. Carangues (22.6%) replaced maquereau doux (19.2%) as the most important species landed by vessels with outboards in 2003, other important groups in this fishery including cordonier (22.3%) and other trap fish (11.9%). In 2003, landings by the small boats and foot fishermen were divided equally between pelagic and semi-pelagic species (48.2%) and demersal/ reef species (51.8%). (6). Typical of previous years, the whaler handline fishery dominated artisanal fisheries catches, accounting for 63.4% of total landings in 2003. An average of 96 whalers operated each month during 2003, an increase of 5 vessels compared to 2002. Carangues made up 42.1% of the total whaler handline catch. Other important species in the catch were, in order of importance, job gris (22.1%), becune (8.3%) bourgeois (8.3%) and bonite (3.7%). For the second consecutive year, catches of bourgeois by the whaler handline fishery increased, by 22.2% over 2002. (7). A maximum of 16 schooners were in operation during 2002 and these vessels accounted for 6.8% of total landings. Bourgeois was again the most important species caught (36.9%), followed by the 'others' category (18.6%) and job gris (8.5%). The spanner crab Ranina ranina accounted for 5.8% of schooner landings. (8). Fish purchases from the artisanal fisheries by Oceana Fisheries Co. Ltd. were equivalent to 10.4% total landings (400.7 MT). Major species groups purchased were red snappers and bourgeois (219 MT), job (57.4 MT), groupers (30,6 MT), capitaine (23.2 MT), octopus (21.9 MT) and carangue (17 MT). (9). Fish purchases from foreign longline and purse seine vessels by Oceana Fisheries Co. Ltd. were 245.9 MT during 2002. Species purchased were all pelagic, of which bonito bait was the most common (112.8 MT), followed by yellowfin (40.3 MT), dorade (37.3 MT) and skipjack (14.1 MT). (10). Fish exports by Oceana Fisheries Co. Ltd. amounted to 201.1 MT, a decrease of around 25 MT compared to 2002. These exports were valued at SR 5.6 million (C.I.F). Compared to the previous year, the markets shifted in order of importance in 2003, with Mauritius constituting the major importer of Seychelles fish products (69.9 MT), followed by Reunion (55.6 MT), England (50.1 MT) and France (14.6 MT). Pelagic fishes (33.8%), bourgeois (29.5%) and job (15.8%) were the most important fish groups exported. (11). A comparison of data collected between 1991 and 2003 follows, The proportion of catch by boat type and number of boats operating shown in the following table does not include the research vessel (RJV L'Amitie) of the Seychelles Fishing Authority, which landed 3.1 MT of fish in 2003, contributing 0.1% to the total artisanal catch.

Description: Published

Description: (1). During 2002 an estimated total of 4915 tonnes of fish was landed on Mahe, Praslin and La Digue by 374 fishing boats. 83.1% of the total catch was landed on Mahe alone. The total catch increased by 625 tonnes compared to 2001, and the number of boats operating decreased by 3 over the same period. (2). The most important species groups landed (greater than 5% of the total catch) were carangues (41.5%), job (12.4%), capitaine (6.8%), becune (6.1%), maquereau doux (5.7%) and bourgeois (5.7%). (3). Peak landings occurred in October (576.5 MT) and the lowest catch was recorded in January (222.51 MT). The average catch per month was 409.6 tonnes. (4). Seasonal variation in catches of demersal species was less marked compared to previous years. The mean monthly catch during the SE Trades (May — October, inclusive) was 420.5 MT, compared to a mean monthly catch of 359.4 MT during the NW monsoon (December — March, inclusive). High catches were probably maintained during the period of May to October in 2002 due to the comparatively weak strength of the SE Trades in that year, as determined by lower than average wind speeds for most months in that period (Meteorological Office, pers. comm.). Identical to the pattern observed in 2001, the highest catches for carangues occurred in April. Catches of cordonnier in 2002 (203.0 MT) were more than double those recorded in 2001 (90.5), and were lowest during the period of March to June, inclusive. (5). In total, the small boat fishery accounted for 26.4% of fish landings during 2002. Compared to the total artisanal catch, the percentage catch by boat type for the small boat fishery was as follows: fishermen on foot — 0.6%; pirogues — 0.6%; outboards -25.2% and whalers with traps — 2.2%. Fishermen on foot mostly landed octopus (87.0%), although cordonnier catches by this category were also recorded in 2002 (12.6%). Due to changes in fisheries fieldworker coverage in 2002, landings of maquereau by pirogue were not recorded, with cordonnier (57.6%) and other trap fish (23.2%) dominating landings instead. The predominant species groups landed by outboards were, in order of importance, maquereau doux (22.6%), carangues (21.7%), other trap fish (13.9%) and cordonnier (13.6%). Whalers with traps landed mainly capitaine (61.3%), other trap fish (20.1%) and cordonnier (12.3%). In 2002, landings by the small boat fleet were once again approximately divided equally between pelagic (51.3%) and demersal/ reef species (47.4%). (6). The whaler handline fishery accounted for 67.9% of total landings. An average of 91 whalers operated each month during 2002, indicating an increase of 1 vessel operating when compared to 2001. Carangues made up 52.5% of the total whaler handline catch. Other important species in the catch were, in order of importance, job gris (16.4%), becune (8.4%) bourgeois (5.0%), bordemar (2.6%) and vara vara (2.2%). Catches of Bourgeois decreased by 28.8% in 2002 compared to the catch of 2001. (7). Purchases from the artisanal fisheries by Oceana Fisheries were equivalent to 10.3% of total landings (504.2 MT). Oceana Fisheries purchased all fish from the Port Victoria site. Major species groups purchased were red snappers and bourgeois (57.5%), job (12.7%), groupers (5.2%) and capitaine (5.9 %). (8). Fish purchases from foreign longline vessels were in the order of 152.3 MT of frozen fish (gutted and ungutted) during 2002. Species purchased were all pelagic, of which bonito bait was the most common (98.0 MT), followed by yellowfin (18.9 MT), dorade (12.6 MT) and skipjack (12.6 MT). (9). Fish exports by Oceana Fisheries amounted to 226.6 MT, 85.9% of which was fresh and 14.1% frozen. These exports were valued at SR 7.1 million (CIF). Major destinations for the fish were England (34.5%), Reunion (30.3%) and Mauritius (17.0%). Pelagic fish (41.5%), bourgeois (23.4%), and Job (19.2%). formed the most important fish groups exported. (10). A comparison of data collected between 1990 and 2002 follows. The proportion of catch by boat type and number of boats operating shown in the following table do not include the research vessels of the Seychelles Fishing Authority which landed 11.7 tonnes of fish in 2002, contributing 0.2% of the total catch.

Description: Published

Description: : Although the 1000 Genomes haplotypes are the most commonly used reference panel for imputation, medical sequencing projects are generating large alternate sets of sequenced samples. Imputation in African Americans using 3384 haplotypes from the Exome Sequencing Project, compared with 2184 haplotypes from 1000 Genomes Project, increased effective sample size by 8.3–11.4% for coding variants with minor allele frequency 〈1%. No loss of imputation quality was observed using a panel built from phenotypic extremes. We recommend using haplotypes from Exome Sequencing Project alone or concatenation of the two panels over quality score-based post-imputation selection or IMPUTE2’s two-panel combination. Contact: yunli@med.unc.edu Supplementary information: Supplementary data are available at Bioinformatics online.

Description: Data visualization is an essential component of genomic data analysis. However, the size and diversity of the data sets produced by today’s sequencing and array-based profiling methods present major challenges to visualization tools. The Integrative Genomics Viewer (IGV) is a high-performance viewer that efficiently handles large heterogeneous data sets, while providing a smooth and intuitive user experience at all levels of genome resolution. A key characteristic of IGV is its focus on the integrative nature of genomic studies, with support for both array-based and next-generation sequencing data, and the integration of clinical and phenotypic data. Although IGV is often used to view genomic data from public sources, its primary emphasis is to support researchers who wish to visualize and explore their own data sets or those from colleagues. To that end, IGV supports flexible loading of local and remote data sets, and is optimized to provide high-performance data visualization and exploration on standard desktop systems. IGV is freely available for download from http://www.broadinstitute.org/igv , under a GNU LGPL open-source license.

Description: This article considers the unwieldy state of UK environmental legislation in 2013, after 25 years of innovation, ad hoc reform and political change. It shows that an appraisal of UK environmental legislation involves considering much more than primary legislation emanating from Westminster—secondary legislation, devolved legislative instruments, policy documents and administrative norms all serve to constitute and inform the legislative picture. Through this wide analytical lens, the article considers legal problems that characterise UK environmental legislation today, from undermining of the rule of law due to its inaccessible complexity, to occupying an awkward place in public law terms. A particular problem is the fragmentation of legislation, and the article examines the case for integrating environmental legislation in a way that does not undermine the flexibility and institutional expertise that more focused legislation allows. The article offers not only a method for analysing the current UK environmental legislative landscape, but suggests routes for reform that might now be considered.

Description: microRNAs (miRNAs) are a key component of gene regulatory networks and have been implicated in the regulation of virtually every biological process found in multicellular eukaryotes. What makes them interesting from a phylogenetic perspective is the high conservation of primary sequence between taxa, their accrual in metazoan genomes through evolutionary time, and the rarity of secondary loss in most metazoan taxa. Despite these properties, the use of miRNAs as phylogenetic markers has not yet been discussed within a clear conceptual framework. Here we highlight five properties of miRNAs that underlie their utility in phylogenetics: 1) The processes of miRNA biogenesis enable the identification of novel miRNAs without prior knowledge of sequence; 2) The continuous addition of miRNA families to metazoan genomes through evolutionary time; 3) The low level of secondary gene loss in most metazoan taxa; 4) The low substitution rate in the mature miRNA sequence; and 5) The small probability of convergent evolution of two miRNAs. Phylogenetic analyses using both Bayesian and parsimony methods on a eumetazoan miRNA data set highlight the potential of miRNAs to become an invaluable new tool, especially when used as an additional line of evidence, to resolve previously intractable nodes within the tree of life.