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  • 1
    Publication Date: 2014-09-17
    Description: Marine coastal ecosystems, and in particular the sedentary benthic invertebrate communities that play a critical role in regulating coastal geochemical cycles, are compromised by human-induced stresses, including overfishing, habitat destruction, climate change and pollution. However, due to the complexity, remoteness and spatio-temporal variability of this environment, the relationships between tightly coupled biological, physical and geochemical processes are poorly understood. The combination in COBO of innovative in situ measurement instruments from different disciplines with tools for the controlled simulation of various disturbance types and numerical tools for the interpretation of new forms of in situ data will significantly advance our understanding of organism-sediment interactions under dynamic coastal conditions. Integrated observations of the natural environment at high spatial and temporal resolution enable a quantitative and mechanistic understanding of the fundamental processes governing the interaction between the biota and its chemical environment, enabling the informed management of human impacts on coastal ecosystems.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Conference , notRev
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  • 2
    Publication Date: 2022-05-25
    Description: Author Posting. © American Society for Microbiology, 2003. This article is posted here by permission of American Society for Microbiology for personal use, not for redistribution. The definitive version was published in Applied and Environmental Microbiology 69 (2003): 2765-2772, doi:10.1128/AEM.69.5.2765-2772.2003.
    Description: The Guaymas Basin (Gulf of California) is a hydrothermal vent site where thermal alteration of deposited planktonic and terrestrial organic matter forms petroliferous material which supports diverse sulfate-reducing bacteria. We explored the phylogenetic and functional diversity of the sulfate-reducing bacteria by characterizing PCR-amplified dissimilatory sulfite reductase (dsrAB) and 16S rRNA genes from the upper 4 cm of the Guaymas sediment. The dsrAB sequences revealed that there was a major clade closely related to the acetate-oxidizing delta-proteobacterial genus Desulfobacter and a clade of novel, deeply branching dsr sequences related to environmental dsr sequences from marine sediments in Aarhus Bay and Kysing Fjord (Denmark). Other dsr clones were affiliated with gram-positive thermophilic sulfate reducers (genus Desulfotomaculum) and the delta-proteobacterial species Desulforhabdus amnigena and Thermodesulforhabdus norvegica. Phylogenetic analysis of 16S rRNAs from the same environmental samples resulted in identification of four clones affiliated with Desulfobacterium niacini, a member of the acetate-oxidizing, nutritionally versatile genus Desulfobacterium, and one clone related to Desulfobacula toluolica and Desulfotignum balticum. Other bacterial 16S rRNA bacterial phylotypes were represented by non-sulfate reducers and uncultured lineages with unknown physiology, like OP9, OP8, as well as a group with no clear affiliation. In summary, analyses of both 16S rRNA and dsrAB clone libraries resulted in identification of members of the Desulfobacteriales in the Guaymas sediments. In addition, the dsrAB sequencing approach revealed a novel group of sulfate-reducing prokaryotes that could not be identified by 16S rRNA sequencing.
    Description: This study was supported by the NASA Astrobiology Institute (grant CAN NCC2-1054) and by the G. Unger Vetlesen Foundation. Sampling at the Guaymas Basin was made possible by NSF Life in Extreme Environments grant OCE 9714195 to A.T.
    Keywords: Sulfate-reducing bacteria ; Desulfobacteriales
    Repository Name: Woods Hole Open Access Server
    Type: Article
    Format: 276369 bytes
    Format: application/pdf
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  • 3
    Electronic Resource
    Electronic Resource
    350 Main Street , Malden , MA 02148 , USA , and 9600 Garsington Road , Oxford OX4 2DQ , UK . : Blackwell Publishing, Inc.
    Risk analysis 25 (2005), S. 0 
    ISSN: 1539-6924
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Energy, Environment Protection, Nuclear Power Engineering
    Notes: Limited time and resources usually characterize environmental decision making at policy organizations such as the U.S. Environmental Protection Agency. In these climates, addressing uncertainty, usually considered a flaw in scientific analyses, is often avoided. However, ignoring uncertainties can result in unpleasant policy surprises. Furthermore, it is important for decisionmakers to know how defensible a chosen policy option is over other options when the uncertainties of the data are considered. The purpose of this article is to suggest an approach that is unique from other approaches in that it considers uncertainty in two specific ways—the uncertainty of stakeholder values within a particular decision context and data uncertainty in the light of the decision-contextual data–values relationship. It is the premise of this article that the interaction between data and stakeholder values is critical to how the decision options are viewed and determines the effect of data uncertainty on the relative acceptability of the decision options, making the understanding of this interaction important to decisionmakers and other stakeholders. This approach utilizes the recently developed decision analysis framework and process, multi-criteria integrated resource assessment (MIRA). This article will specifically address how MIRA can be used to help decisionmakers better understand the importance of uncertainty on the specific (i.e., decision contextual) environmental policy options that they are deliberating.
    Type of Medium: Electronic Resource
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  • 4
    ISSN: 1745-4581
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Biology
    Notes: We have applied an innovative commercial test system (the GeneGen Major Food Pathogens [MFP] Detection Kit) to detect four of the more important pathogenic microorganisms in food, Salmonella spp., Escherichia coli O157, Listeria monocytogenes and Campylobacter spp. by using multiplex polymerase chain reaction (PCR) combined with a shortened, simplified hybridization protocol on test strips. Testing 129 strains representing 23 different genera yielded no false-positive or false-negative results, and the limit of detection was 100 genome copies of each organism per multiplex PCR using purified genomic DNA. The kit was used for both analyses of chicken samples artificially contaminated with different numbers of the pathogens and of naturally contaminated samples. The results were compared with those obtained with standard microbiological techniques. Both methods yielded the same results in spiking experiments, detecting 1–10 cfu/25 g of the respective pathogen added. It was possible to verify the presence of all four pathogens simultaneously in one assay. The GeneGen MFP Detection Kit saves at least 2–4 days compared with standard methods. The protocol is easy to perform, and there is no need for any additional costly and sophisticated equipment, except for a thermocycler, because hybridization is carried out at ambient temperature and the results can be evaluated with the unaided eye. This enables the assay to be performed in relatively modestly equipped laboratories for both DNA-based screening of food samples and/or confirmation of suspect colonies.
    Type of Medium: Electronic Resource
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  • 5
    ISSN: 1365-2958
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Biology , Medicine
    Type of Medium: Electronic Resource
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  • 6
    ISSN: 1365-2486
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Biology , Energy, Environment Protection, Nuclear Power Engineering , Geography
    Notes: The western Palaearctic continental flyway that connects the tundra and taiga belts of Russia with north-west Europe is the major migratory avenue for an estimated 9.3 million herbivorous water birds (swans, geese and ducks). Agricultural practices together with protection measures subsidize the carrying capacity of winter habitats of the birds. Densities of these birds are highest in the Netherlands, where nitrogen (N) inputs to farmland have increased during the last 70 years and became the highest in Europe (〉250 kg manure and fertilizer ha−1 yr−1). A comparison of population trends of 13 species of avian herbivores reveals generally expanding populations in the past 50 years, with the greatest increases from 1970 to 1990. Populations of the smallest avian herbivores, such as ducks, are either stable or have peaked and are now in decline, whereas numbers of larger herbivores (geese and swans) continue to increase and barnacle and greylag geese now breed in the Netherlands, in addition to northern sites.During the northerly spring migration, stop-over sites, mostly in the agricultural regions of eastern Europe and Scandinavia, lie between the 3 and 6°C mean daily temperature isotherms in April, temperatures at which grasses start to grow, where flooding of riparian wetlands frequently occurs and fertilizers are applied to farmland. However, the restructuring of agricultural practices in an enlarged EU is likely to affect water bird populations and their migration routes. The reduced use of N in the Netherlands is predicted to constrain population growth, especially of the smallest avian herbivores with their high basal metabolic rates, because of the declining food quality of grass leaves. The introduction of large-scale farming of oilseed rape, winter cereals, sugar beet and potatoes at the expense of grassland also will adversely affect these birds, whereas larger species are likely to continue exploiting these crops.
    Type of Medium: Electronic Resource
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  • 7
    ISSN: 1476-4687
    Source: Nature Archives 1869 - 2009
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
    Notes: [Auszug] For years, microbiologists characterized the Archaea as obligate extremophiles that thrive in environments too harsh for other organisms. The limited physiological diversity among cultivated Archaea suggested that these organisms were metabolically constrained to a few environmental niches. For ...
    Type of Medium: Electronic Resource
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  • 8
    Electronic Resource
    Electronic Resource
    Oxford, UK : Blackwell Publishing Ltd
    FEMS microbiology letters 248 (2005), S. 0 
    ISSN: 1574-6968
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Biology
    Notes: We have investigated a staphylococcal surface display system for its potential future use as a protein library display system in combinatorial biochemistry. Efficient affinity-based selections require a system capable of fine affinity discrimination of closely related binders to minimize the loss of potentially improved variants. In this study, a significant breakthrough was achieved to avoid biases due to potential cell-to-cell variations in surface expression levels, since it was found that a generic protein tag, present within the displayed recombinant surface proteins on the cells, could be successfully employed to obtain normalization of the target-binding signal. Four mutated variants of a staphylococcal protein A domain with different affinity to human IgG were successfully expressed on the surface of recombinant Staphylococcus carnosus cells. The system was evaluated for affinity-based cell sorting experiments, where cell-displayed protein A domains with an 8-fold difference in target affinity were mixed at a ratio of 1:1000 and sorted using FACS. Enrichment factors around 140-fold were obtained from a single round of sorting under normal library sorting conditions when the top 0.1% fraction having the highest antigen binding to surface expression level ratio was sorted. The results demonstrate that the system would have a potential as a selection system in protein library display applications, and the normalization strategy should indeed make it possible to achieve fine affinity discriminations in future library selections.
    Type of Medium: Electronic Resource
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  • 9
  • 10
    Publication Date: 2005-07-07
    Print ISSN: 0027-8424
    Electronic ISSN: 1091-6490
    Topics: Biology , Medicine , Natural Sciences in General
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