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  • Articles  (6)
  • Other Sources
  • Nucleic acid structure, Computational Methods  (3)
  • 04. Solid Earth::04.08. Volcanology::04.08.03. Magmas  (2)
  • 04. Solid Earth::04.04. Geology::04.04.01. Earthquake geology and paleoseismology  (1)
  • Oxford University Press  (3)
  • Elsevier  (2)
  • Schweizerbart Science Publishers  (1)
  • 2020-2023
  • 2010-2014  (6)
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  • Articles  (6)
  • Other Sources
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  • 2020-2023
  • 2010-2014  (6)
  • 1995-1999
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  • 1
    Publication Date: 2020-11-30
    Description: Mafic phenocrysts from selected products of the last 4 ka volcanic activity at Mt. Vesuvius were investigated for their chemical and O-isotope composition, as a proxy for primary magmas feeding the system. 18O/16O ratios of studied Mg-rich olivines suggest that near-primary shoshonitic to tephritic melts experienced a flux of sedimentary carbonate-derived CO2, representing the early process of magma contamination in the roots of the volcanic structure. Bulk carbonate assimilation (physical digestion) mainly occurred in the shallow crust, strongly influencing magma chamber evolution. On a petrological and geochemical basis the effects of bulk sedimentary carbonate digestion on the chemical composition of the near-primary melts are resolved from those of carbonate-released CO2 fluxed into magma. An important outcome of this process lies in the effect of external CO2 in changing the overall volatile solubility of the magma, enhancing the ability of Vesuvius mafic magmas to rapidly rise and explosively erupt at the surface.
    Description: Published
    Description: 84-95
    Description: 2.3. TTC - Laboratori di chimica e fisica delle rocce
    Description: 3.5. Geologia e storia dei vulcani ed evoluzione dei magmi
    Description: JCR Journal
    Description: reserved
    Keywords: stable-isotope ; magma geochemistry ; CO2-degassing ; Vesuvius ; 04. Solid Earth::04.08. Volcanology::04.08.03. Magmas ; 04. Solid Earth::04.08. Volcanology::04.08.05. Volcanic rocks
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Type: article
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  • 2
    Publication Date: 2017-04-04
    Description: We describe the field relations, petrographic, mineralogical and geochemical characteristics of an exceptional “golden” pumice belonging to a tephra layer exposed on the summit area of Stromboli volcano, Italy. Pumice sample PST-9 comes from a fallout deposit older than a spatter agglutinate sequence emplaced during the twentieth century. The eruption that produced it had a size exceeding that of intermediate paroxysms but was smaller than large-scale, spatter-forming, paroxysms from the sixteenth century and 1930 A.D. Lapilli are strongly vesicular and crystal-poor, similar to other “golden” pumices. Modal proportions include 89 vol% glass, 8 vol% clinopyroxene, 1–2 vol% olivine and 1–2 vol% plagioclase. Plagioclase is represented by reacted crystals coming from the shallow resident magma and incorporated in the pumice during eruption. A total of 74 and 44 crystals of olivine and clinopyroxene, respectively, were examined and 187 and 99 electron microprobe analyses obtained. Fo in olivine ranges between 70 and 92 mol% and Fs in clinopyroxene between 3 and 13 mol%. PST-9 hosts a higher proportion of Fo-rich olivine and Fs-poor clinopyroxene than the other “golden” pumices. Groundmass glasses are basaltic (Mg# = 66–69), as are most rim glasses around olivine and clinopyroxene, and glass inclusions in clinopyroxene. They are more primitive than in the other “golden” pumices. A few rim glasses and glass inclusions are shoshonitic (Mg# = 45–50). Most glass inclusions in olivine have CaO/Al2O3 higher than the other glasses and the whole-rock. PST-9 has the highest bulk MgO, CaO, Mg# and CaO/Al2O3 and the lowest FeOt of all “golden” pumices analysed to date. Analysis of Fe-Mg partitioning between olivine, clinopyroxene and melt allows three crystallization stages to be recognized. The first involves primitive mantle-derived melts (Mg# = 74–80), the second basaltic melts represented by groundmass glasses and the third is associated with more evolved melts represented by the shoshonitic glasses. The population of crystals in “golden” pumices is heterogeneous not only because of crystal incorporation from the shallow resident magma, but also because of pre-eruptive recharge of the deep reservoir with primitive melts. Differences between PST-9 and the other “golden” pumices in terms of groundmass glass composition and distribution of olivine and clinopyroxene compositions reflect contrasted replenishment rates of the deep reservoir with primitive liquids. Gabbroic inclusions in a clinopyroxene crystal provide a direct illustration of melt wall-rock interaction and stress the variability of the deep reservoir in terms of temperature, crystallinity and phase assemblages. Deep crystallization of plagioclase should be considered as a possibility at Stromboli. PST-9 is exceptionally well representative of the early magmatic evolution of “golden” pumices.
    Description: Published
    Description: 499-517
    Description: 2.3. TTC - Laboratori di chimica e fisica delle rocce
    Description: 3.5. Geologia e storia dei vulcani ed evoluzione dei magmi
    Description: 4.3. TTC - Scenari di pericolosità vulcanica
    Description: JCR Journal
    Description: reserved
    Keywords: Stromboli ; golden pumice ; olivine ; clinopyroxene ; primitive melt ; deep plumbing system ; 04. Solid Earth::04.04. Geology::04.04.05. Mineralogy and petrology ; 04. Solid Earth::04.08. Volcanology::04.08.03. Magmas ; 04. Solid Earth::04.08. Volcanology::04.08.05. Volcanic rocks
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Type: article
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  • 3
    Publication Date: 2017-04-04
    Description: The relationships between human modification of the environment and natural events in the Roman city of Lepti Magna (UNESCO world heritage), western Libya, are analyzed. For the first time, the history of Leptis Magna is tested against a geomorphological and stratigraphical reconstruction and radiocarbon dating. Historical and archaeological interpretations or analyses indicate the occurrence of different extreme natural events as the cause of the town’s decline: earthquakes, flooding and tsunami. Geological and geomorphological surveys investigated the dynamics of the nearby Wadi Lebda, a major dryland stream that forms the depositional and erosional systems of the settlement area. Alluvial phases were studied by applying traditional stratigraphic analyses of outcrops and hand-cores. Additionally, the mapped flights of inset terrace surfaces provided insights into the human modifications of the natural depositional/erosional environment during historical times and the following alluvial phases affecting the Leptis Magna harbor. The results integrate the archaeological knowledge by providing some independent chronological constraints, and indicate that Leptis Magna history was tightly linked to the Wadi Lebda. Aware of the hazards related to devastating flooding, the Romans were able to cope with the threat posed by the wadi by performing engineering defensive hydraulic works around the town (dam and artificial channels). Once the economic decay began and the society could no longer guarantee the ongoing maintenance of these structures, the decline of the settlement started and the occurrence of destructive floods reclaimed the populated areas. Conversely, the occurrence of a large earthquake (365 CE), or of a tsunami that caused the disruption of the hydraulic systems and the infill of the harbor, has been discarded as primary cause of the decline of Leptis Magna.
    Description: Published
    Description: 171-184
    Description: 3.2. Tettonica attiva
    Description: JCR Journal
    Description: reserved
    Keywords: geomorphology ; quaternary geology ; 04. Solid Earth::04.04. Geology::04.04.01. Earthquake geology and paleoseismology
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Type: article
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  • 4
    Publication Date: 2012-06-28
    Description: Determining the structural properties of mRNA is key to understanding vital post-transcriptional processes. As experimental data on mRNA structure are scarce, accurate structure prediction is required to characterize RNA regulatory mechanisms. Although various structure prediction approaches are available, it is often unclear which to choose and how to set their parameters. Furthermore, no standard measure to compare predictions of local structure exists. We assessed the performance of different methods using two types of data: transcriptome-wide enzymatic probing information and a large, curated set of cis -regulatory elements. To compare the approaches, we introduced structure accuracy, a measure that is applicable to both global and local methods. Our results showed that local folding was more accurate than the classic global approach. We investigated how the locality parameters, maximum base pair span and window size, influenced the prediction performance. A span of 150 provided a reasonable balance between maximizing the number of accurately predicted base pairs, while minimizing effects of incorrect long-range predictions. We characterized the error at artificial sequence ends, which we reduced by setting the window size sufficiently greater than the maximum span. Our method, LocalFold, diminished all border effects and produced the most robust performance.
    Keywords: Nucleic acid structure, Computational Methods
    Print ISSN: 0305-1048
    Electronic ISSN: 1362-4962
    Topics: Biology
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  • 5
    Publication Date: 2012-02-28
    Description: With discovery of diverse roles for RNA, its centrality in cellular functions has become increasingly apparent. A number of algorithms have been developed to predict RNA secondary structure. Their performance has been benchmarked by comparing structure predictions to reference secondary structures. Generally, algorithms are compared against each other and one is selected as best without statistical testing to determine whether the improvement is significant. In this work, it is demonstrated that the prediction accuracies of methods correlate with each other over sets of sequences. One possible reason for this correlation is that many algorithms use the same underlying principles. A set of benchmarks published previously for programs that predict a structure common to three or more sequences is statistically analyzed as an example to show that it can be rigorously evaluated using paired two-sample t -tests. Finally, a pipeline of statistical analyses is proposed to guide the choice of data set size and performance assessment for benchmarks of structure prediction. The pipeline is applied using 5S rRNA sequences as an example.
    Keywords: Nucleic acid structure, Computational Methods
    Print ISSN: 0305-1048
    Electronic ISSN: 1362-4962
    Topics: Biology
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  • 6
    Publication Date: 2012-06-28
    Description: Visually examining RNA structures can greatly aid in understanding their potential functional roles and in evaluating the performance of structure prediction algorithms. As many functional roles of RNA structures can already be studied given the secondary structure of the RNA, various methods have been devised for visualizing RNA secondary structures. Most of these methods depict a given RNA secondary structure as a planar graph consisting of base-paired stems interconnected by roundish loops. In this article, we present an alternative method of depicting RNA secondary structure as arc diagrams. This is well suited for structures that are difficult or impossible to represent as planar stem-loop diagrams. Arc diagrams can intuitively display pseudo-knotted structures, as well as transient and alternative structural features. In addition, they facilitate the comparison of known and predicted RNA secondary structures. An added benefit is that structure information can be displayed in conjunction with a corresponding multiple sequence alignments, thereby highlighting structure and primary sequence conservation and variation. We have implemented the visualization algorithm as a web server R- chie as well as a corresponding R package called R4RNA, which allows users to run the software locally and across a range of common operating systems.
    Keywords: Nucleic acid structure, Computational Methods
    Print ISSN: 0305-1048
    Electronic ISSN: 1362-4962
    Topics: Biology
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