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  • Articles  (68)
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  • 2015-2019  (68)
  • Nature  (12)
  • Journal of Geophysical Research JGR - Space Physics  (11)
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  • Articles  (68)
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  • 1
    Publication Date: 2016-10-01
    Print ISSN: 2169-9380
    Electronic ISSN: 2169-9402
    Topics: Geosciences , Physics
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  • 2
    Publication Date: 2016-04-07
    Description: Lypd8 promotes the segregation of flagellated microbiota and colonic epithelia Nature 532, 7597 (2016). doi:10.1038/nature17406 Authors: Ryu Okumura, Takashi Kurakawa, Takashi Nakano, Hisako Kayama, Makoto Kinoshita, Daisuke Motooka, Kazuyoshi Gotoh, Taishi Kimura, Naganori Kamiyama, Takashi Kusu, Yoshiyasu Ueda, Hong Wu, Hideki Iijima, Soumik Barman, Hideki Osawa, Hiroshi Matsuno, Junichi Nishimura, Yusuke Ohba, Shota Nakamura, Tetsuya Iida, Masahiro Yamamoto, Eiji Umemoto, Koichi Sano & Kiyoshi Takeda Colonic epithelial cells are covered by thick inner and outer mucus layers. The inner mucus layer is free of commensal microbiota, which contributes to the maintenance of gut homeostasis. In the small intestine, molecules critical for prevention of bacterial invasion into epithelia such as Paneth-cell-derived anti-microbial peptides and regenerating islet-derived 3 (RegIII) family proteins have been identified. Although there are mucus layers providing physical barriers against the large number of microbiota present in the large intestine, the mechanisms that separate bacteria and colonic epithelia are not fully elucidated. Here we show that Ly6/PLAUR domain containing 8 (Lypd8) protein prevents flagellated microbiota invading the colonic epithelia in mice. Lypd8, selectively expressed in epithelial cells at the uppermost layer of the large intestinal gland, was secreted into the lumen and bound flagellated bacteria including Proteus mirabilis. In the absence of Lypd8, bacteria were present in the inner mucus layer and many flagellated bacteria invaded epithelia. Lypd8−/− mice were highly sensitive to intestinal inflammation induced by dextran sulfate sodium (DSS). Antibiotic elimination of Gram-negative flagellated bacteria restored the bacterial-free state of the inner mucus layer and ameliorated DSS-induced intestinal inflammation in Lypd8−/− mice. Lypd8 bound to flagella and suppressed motility of flagellated bacteria. Thus, Lypd8 mediates segregation of intestinal bacteria and epithelial cells in the colon to preserve intestinal homeostasis.
    Print ISSN: 0028-0836
    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
    Published by Springer Nature
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  • 3
    Publication Date: 2016-02-06
    Description: Jupiter's X-ray auroral emission in the polar cap region results from particles which have undergone strong field-aligned acceleration into the ionosphere [ Cravens et al. , 2003]. The origin of precipitating ions and electrons and the time variability in the X-ray emission are essential to uncover the driving mechanism for the high energy acceleration. The magnetospheric location of the source field line where the X-ray is generated is likely affected by the solar wind variability. However, these essential characteristics are still unknown because the long-term monitoring of the X-rays and contemporaneous solar wind variability has not been carried out. In Apr 2014, the first long-term multi-wavelength monitoring of Jupiter's X-ray and EUV auroral emissions was made by the Chandra X-ray Observatory, XMM-Newton, and Hisaki satellite. We find that the X-ray count rates are positively correlated with the solar wind velocity and insignificantly with the dynamic pressure. Based on the magnetic field mapping model, a half of the X-ray auroral region was found to be open to the interplanetary space. The other half of the X-ray auroral source region is magnetically connected with the pre-noon to post-dusk sector in the outermost region of the magnetosphere, where the Kelvin-Helmholtz (KH) instability, magnetopause reconnection, and quasi-periodic particle injection potentially take place. We speculate that the high energy auroral acceleration is associated with the KH instability and/or magnetopause reconnection. This association is expected to also occur in many other space plasma environments such as Saturn and other magnetized rotators.
    Print ISSN: 0148-0227
    Topics: Geosciences , Physics
    Published by Wiley on behalf of American Geophysical Union (AGU).
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  • 4
    Publication Date: 2016-01-31
    Description: We report the first Jupiter X-ray observations planned to coincide with an Interplanetary Coronal Mass Ejection (ICME). At the predicted ICME arrival time, we observed a factor of ∼8 enhancement in Jupiter‘s X-ray aurora. Within 1.5 hours of this enhancement, intense bursts of non-Io decametric radio emission occurred. Spatial, spectral and temporal characteristics also varied between ICME arrival and another X-ray observation two days later. Gladstone et al. [2002] discovered the polar X-ray hot spot and found it pulsed with 45minute quasi-periodicity. During the ICME arrival, the hot spot expanded and exhibited two periods: 26minute periodicity from sulfur ions and 12minute periodicity from a mixture of carbon/sulfur and oxygen ions. After the ICME, the dominant period became 42minutes. By comparing Vogt et al. [2011] Jovian mapping models with spectral analysis, we found that during ICME arrival at least two distinct ion populations, from Jupiter‘s dayside, produced the X-ray aurora. Auroras mapping to magnetospheric field lines between 50-70R J were dominated by emission from precipitating sulfur ions (S 7+,...,14+ ). Emissions mapping to closed field lines between 70-120R J and to open field lines were generated by a mixture of precipitating oxygen (O 7+,8+ ) and sulfur/carbon ions, possibly implying some solar wind precipitation. We suggest the best explanation for the X-ray hot spot is pulsed dayside reconnection perturbing magnetospheric downward currents, as proposed by Bunce et al. [2004]. The auroral enhancement has different spectral, spatial and temporal characteristics to the hot spot. By analysing these characteristics and coincident radio emissions, we propose that the enhancement is driven directly by the ICME through Jovian magnetosphere compression and/or a large-scale dayside reconnection event.
    Print ISSN: 0148-0227
    Topics: Geosciences , Physics
    Published by Wiley on behalf of American Geophysical Union (AGU).
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  • 5
    Publication Date: 2019
    Description: Abstract In the Jovian magnetosphere, sulfur and oxygen ions supplied by the satellite Io are distributed in the so‐called Io plasma torus. The plasma torus is located in the inner area of the magnetosphere and the plasma in the torus corotates with the planet. The density and the temperature of the plasma in the torus have significant azimuthal variations. In this study, data from three‐year observations obtained by the Hisaki satellite, from December 2013 to August 2016, were used to investigate statistically the azimuthal variations and to find out whether the variations were influenced by the increase in neutral particles from Io. The azimuthal variation was obtained from a time series of sulfur ion line ratios, which were sensitive to the electron temperature and the sulfur ion mixing ratio S3+/S+. The major characteristics of the azimuthal variation in the plasma parameters were consistent with the dual hot electron model, proposed to explain previous observations. On the other hand, the Hisaki data showed that the peak System III longitude in the S3+/S+ ratio was located not only around 0°–90°, as in previous observations, but also around 180°–270°. The rotation period, the System IV periodicity, was sometimes close to the Jovian rotation period. Persistent input of energy to electrons in a limited longitude range of the torus is associated with the shortening of the System IV period.
    Print ISSN: 2169-9380
    Electronic ISSN: 2169-9402
    Topics: Geosciences , Physics
    Published by Wiley on behalf of American Geophysical Union (AGU).
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  • 6
    Publication Date: 2015-06-23
    Description: Although the adult mammalian heart is incapable of meaningful functional recovery following substantial cardiomyocyte loss, it is now clear that modest cardiomyocyte turnover occurs in adult mouse and human hearts, mediated primarily by proliferation of pre-existing cardiomyocytes. However, fate mapping of these cycling cardiomyocytes has not been possible thus far owing to the lack of identifiable genetic markers. In several organs, stem or progenitor cells reside in relatively hypoxic microenvironments where the stabilization of the hypoxia-inducible factor 1 alpha (Hif-1alpha) subunit is critical for their maintenance and function. Here we report fate mapping of hypoxic cells and their progenies by generating a transgenic mouse expressing a chimaeric protein in which the oxygen-dependent degradation (ODD) domain of Hif-1alpha is fused to the tamoxifen-inducible CreERT2 recombinase. In mice bearing the creERT2-ODD transgene driven by either the ubiquitous CAG promoter or the cardiomyocyte-specific alpha myosin heavy chain promoter, we identify a rare population of hypoxic cardiomyocytes that display characteristics of proliferative neonatal cardiomyocytes, such as smaller size, mononucleation and lower oxidative DNA damage. Notably, these hypoxic cardiomyocytes contributed widely to new cardiomyocyte formation in the adult heart. These results indicate that hypoxia signalling is an important hallmark of cycling cardiomyocytes, and suggest that hypoxia fate mapping can be a powerful tool for identifying cycling cells in adult mammals.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Kimura, Wataru -- Xiao, Feng -- Canseco, Diana C -- Muralidhar, Shalini -- Thet, SuWannee -- Zhang, Helen M -- Abderrahman, Yezan -- Chen, Rui -- Garcia, Joseph A -- Shelton, John M -- Richardson, James A -- Ashour, Abdelrahman M -- Asaithamby, Aroumougame -- Liang, Hanquan -- Xing, Chao -- Lu, Zhigang -- Zhang, Cheng Cheng -- Sadek, Hesham A -- I01 BX000446/BX/BLRD VA/ -- R01 HL108104/HL/NHLBI NIH HHS/ -- England -- Nature. 2015 Jul 9;523(7559):226-30. doi: 10.1038/nature14582. Epub 2015 Jun 22.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉1] Department of Internal Medicine, Division of Cardiology, The University of Texas Southwestern Medical Center, Dallas, Texas 75390, USA [2] Life Science Center, Tsukuba Advanced Research Alliance, University of Tsukuba, 1-1-1 Tennoudai, Tsukuba, Ibaraki 305-8577, Japan. ; Department of Internal Medicine, Division of Cardiology, The University of Texas Southwestern Medical Center, Dallas, Texas 75390, USA. ; Departments of Physiology and Developmental Biology, The University of Texas Southwestern Medical Center, Dallas, Texas 75390, USA. ; 1] Department of Internal Medicine, Division of Cardiology, The University of Texas Southwestern Medical Center, Dallas, Texas 75390, USA [2] Department of Medicine, VA North Texas Health Care System, 4600 South Lancaster Road, Dallas, Texas 75216, USA. ; 1] Department of Molecular Biology, The University of Texas Southwestern Medical Center, Dallas, Texas 75390, USA [2] Department of Pathology, The University of Texas Southwestern Medical Center, Dallas, Texas 75390, USA. ; Department of Radiation Oncology, The University of Texas Southwestern Medical Center, Dallas, Texas 75390, USA. ; McDermott Center for Human Growth and Development, The University of Texas Southwestern Medical Center, Dallas, Texas 75390, USA. ; 1] Department of Internal Medicine, Division of Cardiology, The University of Texas Southwestern Medical Center, Dallas, Texas 75390, USA [2] Hamon Center for Regenerative Science and Medicine, The University of Texas Southwestern Medical Center, Dallas, Texas 75390, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26098368" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Cell Hypoxia ; Cell Proliferation/genetics ; Female ; Hypoxia-Inducible Factor 1, alpha Subunit/genetics/metabolism ; Male ; Mice ; Mice, Transgenic ; Myocardium/*cytology ; Myocytes, Cardiac/*cytology/metabolism ; Protein Structure, Tertiary ; Recombinant Fusion Proteins/genetics/*metabolism ; Recombinases/genetics/metabolism ; Signal Transduction ; Stem Cells/cytology/metabolism
    Print ISSN: 0028-0836
    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 7
    Publication Date: 2019
    Print ISSN: 0028-0836
    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
    Published by Springer Nature
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  • 8
    Publication Date: 2016-04-22
    Description: Temporal variation of Jupiter's northern aurora is detected using the Extreme Ultraviolet Spectroscope for Exospheric Dynamics (EXCEED) onboard JAXA's Earth-orbiting planetary space telescope Hisaki. The wavelength coverage of EXCEED includes the H 2 Lyman and Werner bands at 80–148 nm from the entire northern polar region. The prominent periodic modulation of the observed emission corresponds to the rotation of Jupiter's main auroral oval through the aperture, with additional superposed -50%–100% temporal variations. The hydrocarbon colour ratio (CR) adopted for the wavelength range of EXCEED is defined as the ratio of the emission intensity in the long wavelength range of 138.5–144.8 nm to that in the short wavelength range of 126.3–130 nm. This CR varies with the planetary rotation phase. Short- (within one planetary rotation) and long-term (〉 one planetary rotation) enhancements of the auroral power are observed in both wavelength ranges and result in a small CR variation. The occurrence timing of the auroral power enhancement does not clearly depend on the central meridional longitude. Despite the limitations of the wavelength coverage and the large field of view of the observation, the auroral spectra and CR-brightness distribution measured using EXCEED are consistent with other observations. (198 words)
    Print ISSN: 0148-0227
    Topics: Geosciences , Physics
    Published by Wiley on behalf of American Geophysical Union (AGU).
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  • 9
    Publication Date: 2016-04-14
    Description: Corrigendum: Hypoxia fate mapping identifies cycling cardiomyocytes in the adult heart Nature 532, 7598 (2016). doi:10.1038/nature16177 Authors: Wataru Kimura, Feng Xiao, Diana C. Canseco, Shalini Muralidhar, SuWannee Thet, Helen M. Zhang, Yezan Abderrahman, Rui Chen, Joseph A. Garcia, John M. Shelton, James A. Richardson, Abdelrahman M. Ashour, Aroumougame Asaithamby, Hanquan Liang, Chao Xing, Zhigang Lu, Cheng Cheng Zhang & Hesham A. Sadek Nature523, 226–230 (2015); doi:10.1038/nature14582In this Letter we omitted to include the accession number for our RNA-seq data. The data are deposited in the Sequence Read Archive database under the accession number SRP060713. Also, in our
    Print ISSN: 0028-0836
    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
    Published by Springer Nature
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  • 10
    Publication Date: 2015-06-05
    Description: Macroautophagy (hereafter referred to as autophagy) degrades various intracellular constituents to regulate a wide range of cellular functions, and is also closely linked to several human diseases. In selective autophagy, receptor proteins recognize degradation targets and direct their sequestration by double-membrane vesicles called autophagosomes, which transport them into lysosomes or vacuoles. Although recent studies have shown that selective autophagy is involved in quality/quantity control of some organelles, including mitochondria and peroxisomes, it remains unclear how extensively it contributes to cellular organelle homeostasis. Here we describe selective autophagy of the endoplasmic reticulum (ER) and nucleus in the yeast Saccharomyces cerevisiae. We identify two novel proteins, Atg39 and Atg40, as receptors specific to these pathways. Atg39 localizes to the perinuclear ER (or the nuclear envelope) and induces autophagic sequestration of part of the nucleus. Atg40 is enriched in the cortical and cytoplasmic ER, and loads these ER subdomains into autophagosomes. Atg39-dependent autophagy of the perinuclear ER/nucleus is required for cell survival under nitrogen-deprivation conditions. Atg40 is probably the functional counterpart of FAM134B, an autophagy receptor for the ER in mammals that has been implicated in sensory neuropathy. Our results provide fundamental insight into the pathophysiological roles and mechanisms of 'ER-phagy' and 'nucleophagy' in other organisms.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Mochida, Keisuke -- Oikawa, Yu -- Kimura, Yayoi -- Kirisako, Hiromi -- Hirano, Hisashi -- Ohsumi, Yoshinori -- Nakatogawa, Hitoshi -- England -- Nature. 2015 Jun 18;522(7556):359-62. doi: 10.1038/nature14506. Epub 2015 Jun 3.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Graduate School of Bioscience and Biotechnology, Tokyo Institute of Technology, Yokohama 226-8503, Japan. ; Frontier Research Center, Tokyo Institute of Technology, Yokohama 226-8503, Japan. ; Advanced Medical Research Center, Yokohama City University, Yokohama 236-0004, Japan. ; 1] Graduate School of Bioscience and Biotechnology, Tokyo Institute of Technology, Yokohama 226-8503, Japan [2] CREST, Japan Science and Technology Agency, Saitama 332-0012, Japan.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26040717" target="_blank"〉PubMed〈/a〉
    Keywords: Amino Acid Sequence ; *Autophagy ; Cell Nucleus/*metabolism ; Endoplasmic Reticulum/*metabolism ; Microbial Viability ; Microtubule-Associated Proteins/metabolism ; Neoplasm Proteins/metabolism ; Nitrogen/deficiency/metabolism ; Nuclear Envelope/metabolism ; Phenotype ; Protein Binding ; Receptors, Cytoplasmic and Nuclear/chemistry/deficiency/genetics/*metabolism ; Saccharomyces cerevisiae/*cytology/*metabolism ; Saccharomyces cerevisiae Proteins/chemistry/genetics/*metabolism ; Vesicular Transport Proteins/metabolism
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    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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