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  • Articles  (79)
  • Open Access-Papers  (79)
  • taxonomy  (30)
  • new species  (23)
  • Caribbean
  • Coral reefs
  • 2020-2023  (23)
  • 2010-2014  (39)
  • 2000-2004  (17)
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  • Articles  (79)
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  • 1
    Publication Date: 2024-01-12
    Description: Numerous members of Ascomycota and Basidiomycota produce only poorly differentiated arthroconidial asexual morphs in culture. These arthroconidial fungi are grouped in genera where the asexual-sexual connections and their taxonomic circumscription are poorly known. In the present study we explored the phylogenetic relationships of two of these ascomycetous genera, Arthrographis and Arthropsis. Analysis of D1/D2 sequences of all species of both genera revealed that both are polyphyletic, with species being accommodated in different orders and classes. Because genetic variability was detected among reference strains and fresh isolates resembling the genus Arthrographis, we carried out a detailed phenotypic and phylogenetic analysis based on sequence data of the ITS region, actin and chitin synthase genes. Based on these results, four new species are recognised, namely Arthrographis chlamydospora, A. curvata, A. globosa and A. longispora. Arthrographis chlamydospora is distinguished by its cerebriform colonies, branched conidiophores, cuboid arthroconidia and terminal or intercalary globose to subglobose chlamydospores. Arthrographis curvata produced both sexual and asexual morphs, and is characterised by navicular ascospores and dimorphic conidia, namely cylindrical arthroconidia and curved, cashew-nut-shaped conidia formed laterally on vegetative hyphae. Arthrographis globosa produced membranous colonies, but is mainly characterised by doliiform to globose arthroconidia. Arthrographis longispora also produces membranous colonies, but has poorly differentiated conidiophores and long arthroconidia. Morphological variants are described for A. kalrae and our results also revealed that Eremomyces langeronii and A. kalrae, traditionally considered the sexual and asexual morphs of the same species, are not conspecific.
    Keywords: Arthroconidial fungi ; Arthrographis ; Arthropsis ; Eremomyces ; phylogeny ; taxonomy
    Repository Name: National Museum of Natural History, Netherlands
    Type: info:eu-repo/semantics/article
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  • 2
    Publication Date: 2015-04-20
    Description: Mucormycosis usually presents as a progressive infection with significant angio-invasion. Mucormycosis due to Mucor irregularis (formerly Rhizomucor variabilis var. variabilis), however, is exceptional in causing chronic cutaneous infection in immunocompetent humans, ultimately leading to severe morbidity if left untreated. More than 90 % of the cases known to date were reported from Asia, mainly from China. The nearest neighbour of M. irregularis is the saprobic species M. hiemalis. The aim of this study was to evaluate the taxonomic position, epidemiology, and intra- and inter-species diversity of M. irregularis based on 21 strains (clinical n = 17) by multilocus analysis using ITS, LSU, RPB1 and RPB2 genes, compared to results of cluster analysis with amplified fragment length polymorphism (AFLP) data. By combining MLST and AFLP analyses, M. irregularis was found to be monophyletic with high bootstrap support, and consisted of five subgroups, which were not concordant in all partitions. It was thus confirmed that M. irregularis is a single species at 96.1–100 % ITS similarity and low recombination rates between populations. Some geographic structuring was noted with some localised populations, which may be explained by limited air-dispersal. The natural habitat of the species is likely to be in soil and decomposing plant material.
    Keywords: Biodiversity ; chronic cutaneous infection ; epidemiology ; Mucor hiemalis ; Mucor irregularis ; Mucormycosis ; taxonomy
    Repository Name: National Museum of Natural History, Netherlands
    Type: Article / Letter to the editor
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  • 3
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    In:  Blumea - Biodiversity, Evolution and Biogeography of Plants (0006-5196) vol.59 (2014) nr.1 p.6
    Publication Date: 2015-03-06
    Description: A small fig tree has been misidentified as Ficus orthoneura for a long time. However, morphologically it is distinct from F. orthoneura and F. hookeriana. Typical are the ellipsoid, puberulous receptacle and caducous basal bracts. Leaf anatomy shows a multiple epidermis with the cells in the inner layer much larger than in the outer layer and thus both layers resemble an epidermis with a separate hypodermis. The abaxial cuticle is strongly sculptured, the palisade layer shows some long subdivided cells, and enlarged lithocysts are only present abaxially. Because of these differences we hereby describe it as a new species, named in honour of Cornelis (Cees) Berg: Ficus cornelisiana.
    Keywords: China ; Ficus ; Moraceae ; new species ; Vietnam
    Repository Name: National Museum of Natural History, Netherlands
    Type: Article / Letter to the editor
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  • 4
    Publication Date: 2022-05-26
    Description: Author Posting. © The Author(s), 2012. This is the author's version of the work. It is posted here by permission of Springer for personal use, not for redistribution. The definitive version was published in Coral Reefs 32 (2013): 727-735, doi:10.1007/s00338-013-1021-5.
    Description: Ocean acidification (OA) threatens the existence of coral reefs by slowing the rate of calcium carbonate (CaCO3) production of framework-building corals thus reducing the amount of CaCO3 the reef can produce to counteract natural dissolution. Some evidence exists to suggest that elevated levels of dissolved inorganic nutrients can reduce the impact of OA on coral calcification. Here, we investigated the potential for enhanced energetic status of juvenile corals, achieved via heterotrophic feeding, to modulate the negative impact of OA on calcification. Larvae of the common Atlantic golf ball coral, Favia fragum, were collected and reared for 3 weeks under ambient (421 μatm) or significantly elevated (1,311 μatm) CO2 conditions. The metamorphosed, zooxanthellate spat were either fed brine shrimp (i.e., received nutrition from photosynthesis plus heterotrophy) or not fed (i.e., primarily autotrophic). Regardless of CO2 condition, the skeletons of fed corals exhibited accelerated development of septal cycles and were larger than those of unfed corals. At each CO2 level, fed corals accreted more CaCO3 than unfed corals, and fed corals reared under 1,311 μatm CO2 accreted as much CaCO3 as unfed corals reared under ambient CO2. However, feeding did not alter the sensitivity of calcification to increased CO2; Δcalcification/ΔΩ was comparable for fed and unfed corals. Our results suggest that calcification rates of nutritionally replete juvenile corals will decline as OA intensifies over the course of this century. Critically, however, such corals could maintain higher rates of skeletal growth and CaCO3 production under OA than those in nutritionally limited environments.
    Description: This project was funded by NSF OCE-1041106 and NSF OCE-1041052, a WHOI winter intern fellowship to A. Zicht made possible by the A. V. Davis Foundation and support from the MIT/WHOI Bermuda Biological Station for Research Fund.
    Description: 2014-03-08
    Keywords: Climate change ; Ocean acidification ; Coral reefs ; Coral calcification ; Heterotrophy ; Energetics
    Repository Name: Woods Hole Open Access Server
    Type: Preprint
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  • 5
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    In:  Blumea: Biodiversity, Evolution and Biogeography of Plants vol. 47 no. 3, pp. 581-595
    Publication Date: 2024-01-12
    Description: The genus Ptilothamnion Thur. in Le Jolis is represented in South Africa by three, or possibly four species: P. codicolum, P. polysporum, P. goukammae spec. nov., and reportedly P. subsimplex, all recorded after 1983. An earlier record of P. pluma is probably erroneous.\nThe new species differs from known representatives of the genus by producing strictly one involucral filament from the hypogenous cell and additionally one from the subhypogenous cell. Ptilothamnion is a widespread genus, but rarely with more than two species in any given regional flora. A critical comparison of the c. 12 species shows that very few characters are shared by all of them.
    Keywords: Ceramiaceae ; Ptilothamnion ; Spermothamnieae ; South Africa ; taxonomy
    Repository Name: National Museum of Natural History, Netherlands
    Type: info:eu-repo/semantics/article
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  • 6
    Publication Date: 2024-01-12
    Description: We investigated the identity and genetic diversity of more than 100 isolates belonging to Phyllosticta (teleomorph Guignardia), with particular emphasis on Phyllosticta citricarpa and Guignardia mangiferae s.l. occurring on Citrus. Phyllosticta citricarpa is the causal agent of Citrus Black Spot and is subject to phytosanitary legislation in the EU. This species is frequently confused with a taxon generally referred to as G. mangiferae, the presumed teleomorph of P. capitalensis, which is a non-pathogenic endophyte, commonly isolated from citrus leaves and fruits and a wide range of other hosts. DNA sequence analysis of the nrDNA internal transcribed spacer region (ITS1, 5.8S nrDNA, ITS2) and partial translation elongation factor 1-alpha (TEF1), actin and glyceraldehyde-3-phosphate dehydrogenase (GPDH) genes resolved nine clades correlating to seven known, and two apparently undescribed species. Phyllosticta citribraziliensis is newly described as an endophytic species occurring on Citrus in Brazil. An epitype is designated for P. citricarpa from material newly collected in Australia, which is distinct from P. citriasiana, presently only known on C. maxima from Asia. Phyllosticta bifrenariae is newly described for a species causing leaf and bulb spots on Bifrenaria harrisoniae (Orchidaceae) in Brazil. It is morphologically distinct from P. capitalensis, which was originally described from Stanhopea (Orchidaceae) in Brazil; an epitype is designated here. Guignardia mangiferae, which was originally described from Mangifera indica (Anacardiaceae) in India, is distinguished from the non-pathogenic endophyte, P. brazilianiae sp. nov., which is common on M. indica in Brazil. Furthermore, a combined phylogenetic tree revealed the P. capitalensis s.l. clade to be genetically distinct from the reference isolate of G. mangiferae. Several names are available for this clade, the oldest being P. capitalensis. These results suggest that endophytic, non-pathogenic isolates occurring on a wide host range would be more correctly referred to as P. capitalensis. However, more genes need to be analysed to fully resolve the morphological variation still observed within this clade.
    Keywords: Guignardia endophyllicola ; Guignardia mangiferae ; Phyllosticta bifrenariae ; Phyllosticta brazilianiae ; Phyllosticta capitalensis ; Phyllosticta citriasiana ; Phyllosticta citribraziliensis ; Phyllosticta citricarpa ; taxonomy
    Repository Name: National Museum of Natural History, Netherlands
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  • 7
    Publication Date: 2024-01-12
    Description: Mucormycosis usually presents as a progressive infection with significant angio-invasion. Mucormycosis due to Mucor irregularis (formerly Rhizomucor variabilis var. variabilis), however, is exceptional in causing chronic cutaneous infection in immunocompetent humans, ultimately leading to severe morbidity if left untreated. More than 90 % of the cases known to date were reported from Asia, mainly from China. The nearest neighbour of M. irregularis is the saprobic species M. hiemalis. The aim of this study was to evaluate the taxonomic position, epidemiology, and intra- and inter-species diversity of M. irregularis based on 21 strains (clinical n = 17) by multilocus analysis using ITS, LSU, RPB1 and RPB2 genes, compared to results of cluster analysis with amplified fragment length polymorphism (AFLP) data. By combining MLST and AFLP analyses, M. irregularis was found to be monophyletic with high bootstrap support, and consisted of five subgroups, which were not concordant in all partitions. It was thus confirmed that M. irregularis is a single species at 96.1\xe2\x80\x93100 % ITS similarity and low recombination rates between populations. Some geographic structuring was noted with some localised populations, which may be explained by limited air-dispersal. The natural habitat of the species is likely to be in soil and decomposing plant material.
    Keywords: Biodiversity ; chronic cutaneous infection ; epidemiology ; Mucor hiemalis ; Mucor irregularis ; Mucormycosis ; taxonomy
    Repository Name: National Museum of Natural History, Netherlands
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  • 8
    Publication Date: 2024-01-12
    Description: Recent studies have found a wide range of ascomycetes to be associated with sooty blotch and flyspeck (SBFS) blemishes on the surfaces of pomaceous fruits, specifically apples. Based on collections of such fungi from apple orchards in Germany and Slovenia we introduce two novel genera according to analyses of morphological characters and nuclear ribosomal DNA sequences (large subunit and internal transcribed spacer regions). Microcyclosporella is represented by a single species, M. mali, and is presently known from Germany and Slovenia. \nMicrocyclosporella is Pseudocercosporella-like in morphology, but genetically and morphologically distinct from Pseudocercosporella s.str., for which an epitype is designated based on a fresh collection of P. bakeri from Laos. \nFurthermore, Pseudocercosporella is shown to be paraphyletic within the Capnodiales. Microcyclospora gen. nov. is Pseudocercospora-like in morphology, but is genetically and morphologically distinct from Pseudocercospora s.str., which is based on P. vitis. Three species, Microcyclospora malicola, M. pomicola (both collected in Germany), and M. tardicrescens (collected in Slovenia) are described. Finally, a new species of Devriesia, D. pseudoamericana, is described from pome fruit surfaces collected in Germany. Devriesia is shown to be paraphyletic, and to represent several lineages of which only Devriesia s.str. is thermotolerant. Further collections are required, however, before the latter generic complex can be resolved.
    Keywords: Devriesia ; hyphomycetes ; Malus ; microfungi ; Pseudocercospora ; Pseudocercosporella ; SBFS ; taxonomy
    Repository Name: National Museum of Natural History, Netherlands
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  • 9
    Publication Date: 2024-04-10
    Description: A small fig tree has been misidentified as Ficus orthoneura for a long time. However, morphologically it is distinct from F. orthoneura and F. hookeriana. Typical are the ellipsoid, puberulous receptacle and caducous basal bracts. Leaf anatomy shows a multiple epidermis with the cells in the inner layer much larger than in the outer layer and thus both layers resemble an epidermis with a separate hypodermis. The abaxial cuticle is strongly sculptured, the palisade layer shows some long subdivided cells, and enlarged lithocysts are only present abaxially. Because of these differences we hereby describe it as a new species, named in honour of Cornelis (Cees) Berg: Ficus cornelisiana.
    Keywords: China ; Ficus ; Moraceae ; new species ; Vietnam
    Repository Name: National Museum of Natural History, Netherlands
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  • 10
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    In:  Persoonia - Molecular Phylogeny and Evolution of Fungi (0031-05850) vol.33 (2014) nr.1 p.155
    Publication Date: 2015-04-20
    Description: Identification of fungi and the International Code of Nomenclature underpinning this process, rests strongly on the characterisation of morphological structures. Yet, the value of these characters to define species in many groups has become questionable or even superfluous. This has emerged as DNA-based techniques have increasingly revealed cryptic species and species complexes. This problem is vividly illustrated in the present study where 105 isolates of the Botryosphaeriales were recovered from both healthy and diseased woody tissues of native Acacia spp. in Namibia and South Africa. Thirteen phylogenetically distinct groups were identified based on Internal Transcribed Spacer (ITS) rDNA PCR-RFLP and translation elongation factor 1-α (TEF1-α) sequence data, two loci that are known to be reliable markers to distinguish species in the Botryosphaeriales. Four of these groups could be linked reliably to sequence data for formerly described species, including Botryosphaeria dothidea, Dothiorella dulcispinae, Lasiodiplodia pseudotheobromae and Spencermartinsia viticola. Nine groups, however, could not be linked to any other species known from culture and for which sequence data are available. These groups are, therefore, described as Aplosporella africana, A. papillata, Botryosphaeria auasmontanum, Dothiorella capri-amissi, Do. oblonga, Lasiodiplodia pyriformis, Spencermartinsia rosulata, Sphaeropsis variabilis and an undescribed Neofusicoccum sp. The species described here could not be reliably compared with the thousands of taxa described in these genera from other hosts and regions, where only morphological data are available. Such comparison would be possible only if all previously described taxa are epitypified, which is not a viable objective for the two families, Botryosphaeriaceae and Aplosporellaceae, in the Botryosphaeriales identified here. The extent of diversity of the Botryosphaeriales revealed in this and other recent studies is expected to reflect that of other undersampled regions and hosts, and illustrates the urgency to find more effective ways to describe species in this, and indeed other, groups of fungi.
    Keywords: Botryosphaeriales ; morphotaxa ; phylogeny ; taxonomy ; tree health
    Repository Name: National Museum of Natural History, Netherlands
    Type: Article / Letter to the editor
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