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  • 11
    Publication Date: 2021-05-19
    Description: Protection authorities of plant and animal genetic resources and conservation of biodiversity as national assets by using biotechnology techniques is the most important objectives of genetic data information bank. Establishment of shrimp species genetic data bank, makes possibility of study multiple genes such as economic genes and since knowledge of genetic variation within and among populations and barcoding species of shrimp are very important for species conservation and with so little researches of Asia in the global studies of DNA barcoding and animal taxonomy in Iran, In this study, Iran shrimp genetic diversity and genetic data bank was done. DNA barcode is a short, standard well known sequence of cytochrome oxidase І gene. By using this DNA sequence can be realized that each animal, plant or fungus belongs to which species. Also prepare a bank of genetic data shrimp pathogens and maintenance of these strains are steps to advance future researches in the fields of pathogenesis mechanism of pathogens, diagnosis, treatment, Disease prevention, production diagnosis native kits and detection of emerging and reemerging diseases its origins. So in this plan samples were collected from imported cultured shrimp Litopenaeus vannamei and and 6 Persian Gulf and Oman Sea shrimp species which classified based on traditional systematically as: Penaeus semisulcatus, Fenneropenaeus merguiensis, Metapenaeus affinis, Parapenaeopsis Stylifera and Fenneropenaeus indicus. After examination of DNA barcode sequence, molecular and bioinformatics operations of each sequence in the Consortium for the Barcode of Life (CBOL) and National Center for Biotechnology Information (NCBI), phylogenetic analysis of each sample was determined and similarity of each sample with NCBI and CBOL database was checked and the closest species to each sample were specified. According to the results different samples of L. vannamei, . banded P.semisulcatus, F. merguiensis and F. indicus have more than 97% similarity to the same species of other countries. non banded P.semisulcatus had 80.07% similarity to banded P.semisulcatus, M. affinis samples had 90.3% similarity to Metapenaeus ensis and Parap. Stylifera had 93.44% similarity to Parapenaeopsis coromandelica in the CBOL. This funding confirmed the need for further investigation and possible announcement of new species. By using ribotyping technique, native isolated pathogenic bacteria and fungi were identified and recorded in the gene bank database center. During sampling of shrimp and water of Specific Pathogen Free shrimp center, 40 bacterial strains were isolated, which 8 of them had the most frequency and identification based on 16S rDNA sequencing was performed. Bacteria identified are: Vibrio nigripulchritudo strain IS013(GenBank:KP843725) ،Vibrio brasiliensis strain IS014 (GenBank:KR186076) ،Vibrio rotiferianus strain IS015 (GenBank:KR186077) ،Vibrio azureus strain IS012 (GenBank:KJ018724.1) ،Vibrio owensii strain IS016 (GenBank:KR186078) ،Agarivorans gilvus strain IS017 (GenBank:KR186079) ،Vibrio brasiliensis IS018 (GenBank:KR186080) and Vibrio alginolyticus strain IS019 (GenBank:1817854), which were recorded in The World Bank genes. In this study fungal isolates were not detected.
    Description: Iranian Fisheries Science Research Institute
    Description: Published
    Keywords: Bacteria ; Ribotyping ; 16S rDNA ; Shrimp ; DNA barcode ; GenBank ; Vibrio nigripulchritudo ; Vibrio rotiferianus ; Vibrio owensii ; Vibrio brasiliensis ; Vibrio azureus ; Agarivorans gilvus ; Vibrio alginolyticus ; Parapenaeopsis coromandelica ; Metapenaeus ensis ; Litopenaeus vannamei
    Repository Name: AquaDocs
    Type: Report , Refereed
    Format: 114pp.
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  • 12
    Publication Date: 2021-05-19
    Description: Gillan , Mazandaran and Gorgan provinces have temperate climate, thus they have more potential for aquatic animal culture. There are thousands hectare of lands for Aquaculure and fisheries in adjacent to Caspian Sea in this provinces. these areas(North alborz) have provided a favorable back ground for aquatic animal breeding and stock enhancement of species in the sea. As a result, this investigation executed during two stages (phases). At first stage, the goal of this project included the feasibility study and demonstrating the existing situation of fish stock enhancement activities in North Alborz area and second phase is to survey on distribution, and production activities of stock enhancing hatcheries as well as their constructions,and production time table. Survey was started frome 2006 to 2008 by using qestionaries in 7 hatcheries from tree provinces.results revieled that there are more than 10 species was subjected to restocking .Total releasing was about 300 millions of fry and finger lings in to the Caspian sea.
    Description: Iranian Fisheries Science Research Institute
    Description: Published
    Keywords: Stock Enhancement ; Broodstock ; Production ; Yield ; Artificial propagation ; Bony fishes ; Sturgeon fishes ; Restocking ; Aquatic ; Culture ; Aquaculure ; Fisheries ; Breeding ; Survey ; Hatcheries ; Fry ; Fingerlings
    Repository Name: AquaDocs
    Type: Report , Refereed
    Format: 191pp.
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  • 13
    Publication Date: 2021-05-19
    Description: The effects of aquaculture industry on the environment were evaluated by studying the water quality of Bushehr costal water during culture season 2005 and 2006. The variations of selected parameters such as total phosphorus, ammonia, chlorophyll a, pH, salinity and... Were monitored in effluent canal, influent canal and open sea in Helleh and Mond regions as monthly. Following occurrence of White Spot Disease (W.S.D) in the shrimp ponds of Bushehr province, shrimp culture suspended and entrance of effluent waters completely were blocked since August 2005, despite the absence of aquaculture sewage evaluation of environment and sampling were continued. During releasing of sewage of shrimp ponds to the coastal waters of Bushehr in Jun 2005, the average amount of ammonia in Helleh and Mond were obtained to be 0.161 mg/l and 0.194 mg/l, however the average amount of total phosphorus in Helleh and Mond regions were 0.149 mg/l and 0.043 mg/l, respectively. Although effluent water suspension, amount of ammonia and total phosphorus were increased in both region especially in June 2006. Comparing present data in Jun 2005 and recorded data from culture period 1997-2003 with permitable range of municipal and aquaculture waste show that; aquaculture industry on both regions have not had any obvious negative effect on the coastal waters of Bushehr but it seems if other sources of pollutions in the region is not controlled, then the aquaculture industry can contribute to occurrence of environmental problems.
    Description: Iranian Fisheries Science Research Institute
    Description: Published
    Keywords: Environmental ; Survey ; Shrimp ; Aquaculture ; Phosphorus ; Ammonia ; Chlorophyll a ; pH ; Salinity ; White spot disease ; Sampling ; Pollution ; Coastal waters
    Repository Name: AquaDocs
    Type: Report , Refereed
    Format: 73pp.
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  • 14
    Publication Date: 2021-05-19
    Description: Study of M. affinis was carried out from June 2001 to December 2002 in two sampling areas of Khouzestan coastal waters. In this period, 18 cruises in Life- Buseif (western coastal area) and 13 cruises in Bahrekan (eastern coastal area) were came by using shrimp trawl net. In Life- Buseif fishing area, the CPUE of total shrimp was the highest (27.8 kg/ h) in September 2001. This parameter estimated 17.4 kg/ h for M.affinis in March. In this area, the highest biomass of total shrimps was In April 2002 (533.3 t). This value was 380.7! for M. Affinis on March. Maximum mean length of males and females of M.affinis were observed m January (13.4 & 11.5 cm respectively). Maximum and minimum sex ratio (f: m) of this species was 2.25: I July and 0.86: I in October 2002. Relative frequency of shrimp in total catch was observed m March (52.5%) in Life- Buseif. This parameter was 27.3% in February in Bahrekan area. In Bahrekan fishing area, total shrimp CPUE was highest (7.5 kg/ h) in March, and max. CPUE for M. affinis was 6.9 kgffl in same month. Maxmum biomass of total shrimp and M. affinis were 1800.4 t and t in March Maximum length of male and female of M.qffinis were 124 and 11.3 cm in March Maximum and minimum sex ratio (f: m) of M. affinis was 3.51 in May and 09: 1 in January, March and August 2002 respectively. According to the results of this study, shrimp catch season was opened in Life- Buseif from 3rd Nov until 29th Dec 2001 and from 6th Nov until 15th Dec 2002 winter shrimp catch season has been closed in Bahrekan since 2001.
    Description: Iranian Fisheries Science Research Institute
    Description: Published
    Keywords: Metapenaeus affinis ; Shrimp ; CPUE
    Repository Name: AquaDocs
    Type: Report , Refereed
    Format: 58pp.
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  • 15
    Publication Date: 2021-05-19
    Description: The inactivated of white spot syndrome virus (WSSV) by Gama and Electron radiation and chemical material such as Formalin with antigen property have been done during last year. At the first time the stock of virus prepared and purred it. Six hundred of shrimp Fenneropenaus indicus with average weight 7 to 12 gram collected from shrimp research station in Heleh area and transported to Shrimp Research Institute in Boushehr province. Vibrio parahemolyticus obtained from Veterinary University of Tehran and then lyophilized it. The bacterial V. parahemolyticus inactivated with Gamma, electron and formalin and then injected to shrimp for activated the immune system. The source of viruses was identified through PCR, TEM and histopathology methods from the shrimp infected in 2009 occurrence of boushehr province. The virus injected to crayfish and collected the hemlymph for prepared the stock of WSSV virus. The virus was lyophilized and then exposed to gamma and electron radiation and formalin with optimal dose for inactivated the virus. The shrimp divided to 25 groups and each group consist of six shrimp and the vaccine exposed to shrimp with injected and bathroom methods and the documented the result after 15 days. In vivo virus titration was performed in Penaeus indicus. Inactivation of WSSV was carried out by a gamma cell instrument Nordian, model 220 with dose rate: 4.8 Gy/sec and activity: 20469 Ci. The LD50 of live virus stock was calculated 10 5.4 / ml and the optimum dose of gamma radiation beam to inactivate WSSV was obtained 14-15 kGy. The LD50 of live virus stock was calculated 10 5.4 / ml and the optimum dose of electron beam to inactivate WSSV was obtained 12-13 kGy and and the virus inactivated by formalin 0.5% V/V during 10 minutes.The LD50 of live virus stock was calculated by Karber method 10 3.29 /ml and 10 5.35 /ml, respectively. The V. parahemolyticus was inactivated with 8 KG. The result showed all vaccine during 2 hours have a good effect to shrimp viruses with the102.4 LD50 / 50 l titre. The result showed if the Gamma and electron vaccine increase to feed of shrimp the effect of vaccine is better than when used without feed. The end of experiment our study showed that the Gamma vaccine has the better effect to control WSSV during 2 hours with comparing the others.
    Description: Iranian Fisheries Science Research Institute
    Description: Published
    Keywords: Vaccine ; White Spot Syndrome Virus ; Gamma irradiation ; Electron Radiation ; Formalin ; Penaeus indicus ; WSSV ; Fenneropenaus indicus ; Shrimp ; V. parahemolyticus ; Preparation
    Repository Name: AquaDocs
    Type: Report , Refereed
    Format: 148pp.
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  • 16
    Publication Date: 2021-05-19
    Description: White Spot Disease (WSD) is a important disease due to economic impacts in shrimp industries. Spreading of this disease in shrimp farms can caused a 100% mortality during 3-10 days. Therefore control of this disease is a strategy in shrimp industry. Vaccination is a way to control of WSD. In several years ago during a project several type vaccine of this virus by association of Atomic Energy Organization is produced that among of them the virus inactivated by GAMA radiation had better results in laboratory. To test of this vaccine in field, a research pilot was carried out. Initially 20000 shrimp napliies were obtained from one of commercial hatchery in Bushehr province, then devided to two groups vaccinated and unvaccinated. The vaccinated group also devided . 26and PL12 , group B vaccinated at PL15and PL 5to two groups, group A that vaccinated at postlarva e (PL) Rrsults showed that difference of growth performance and survival rate between vaccinated and unvaccinated without challenge with WSV after 80 days is not significantly (P〈0.05). but survival rate in vaccinated groups after challenge with WSV was significantly (P〈0.05) further the unvaccinated group. Also the results showed survival rate of group B after challenge with WSV is better than group A and this difference was significantly (P〈0.05). this study showed vaccination of shrimp postlarvae with GAMA radiation vaccine can control of shrimp mortality in incidence of WSD in farms.
    Description: Iranian Fisheries Science Research Institute
    Description: Published
    Keywords: Litopenaeus vannamei ; WSSV ; Gamma radiation ; Vaccination ; Y-ray ; White spot disease ; Shrimp ; Nauplii ; Growth ; Survival rate ; Mortality
    Repository Name: AquaDocs
    Type: Report , Refereed
    Format: 65pp.
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  • 17
    Publication Date: 2021-05-19
    Description: For the first time white spot disease (WSD) was reported in shrimp farms of khoozestan province, in southwest of IRAN in 2002. Then in 2005 the neighbor province, boushehr, was contaminated. In 2008 WSD outbreak reported in sistan-bloochestan province in southeast of Iran. In 2015 all of southern shrimp farms of country except Hormozgan, the middle southern province, which has remained free of WSD, are being contaminated. White Spot disease suspended shrimp culture in thousands hectares of shrimp farms. Considering that white spot disease has not been observed in Hormozgan province yet, the question is; to what extent environmental and management factors participated in preventing WSD outbreak or cause WSD outbreak. In this study (20102012), the effects of environmental factors and management, stressors that decrease immune system function of shrimp are discussed. In addition, the role of pathogen as the main factor of outbreak is discussed. The goal of this study is to define environmental parameters and management practices associates with outbreak of white spot disease in affected provinces and discover reasons of being Hormozgan province free of this disease. In this study the role of the local environmental factors and management practice stressors in susceptibility to WSD was determine. Both the effects of environmental factors in water of ponds including total ammonia, nitrogen, dissolved oxygen, pH, salinity, transparency, and temperature and management issues related to biosecurity are studied. There were overlaps on physical and chemical parameter values obtained in clear areas with contaminated areas .Results of the data analysis suggest that lack of association with WSD incidence was 7 times greater than WSD incidence despite of disease outbreak in sistan-bloochestan province, so other sources of white spot disease virus incidence was suspected in affected areas. Histopathological examinations and polymerase chain reaction (PCR) tests during project performance did not reveal white spot disease virus evidences in post larvae examined from khoozestan province stocked in farms but disease outbreak was happened in that farms , so we suspected to management practice include feed , pond preparation and carrier of disease . Recorded values of temperature and salinity in some months during inspection in Hormozgan province specified stressful condition that may lead to WSD outbreak, however the disease did not appear. Therefore the hypothesis that the water physical and chemical conditions are reasons to prevent disease outbreak in Hormozgan province is being rejected. The policy of Hormozgan’s fishery authorities, to replaced Fenneropenaeus indicus with specific pathogen free Litopenaeus vannamei, that is more resistant to some of diseases, before incidence of WSD in farms and to before being endemic in the Hormozgan province, made an advantage compare to affected southern provinces that introduced Litopenaeus vannamei after WSD prevalence to their farms. However it does not guarantee to maintain current trend of being Hormozgan province farms free of white spot disease. Therefore establishing the principals of biosecurity are strongly emphasized. Strategies taken by the proficient authorities in preparation of SPF shrimp broodstock can be the most important factor in preventing WSD. Regarding biosecurity principals purchased feed must be free of shrimp head powder. Construction the new shrimp farms should be as far as it could be away from contaminated areas.
    Description: Iranian Fisheries Science Research Institute
    Description: Published
    Keywords: Environmental ; Physical ; Chemical ; Epidemiological study ; WSD ; Fenneropenaeus indicus ; Penaeus vannamei ; Shrimp ; White Spot Disease ; Temperature ; Salinity ; PCR ; Polymerase Chain Reaction ; Ammonia ; Nitrogen ; Dissolved oxygen ; pH ; Transparency
    Repository Name: AquaDocs
    Type: Report , Refereed
    Format: 468pp.
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  • 18
    Publication Date: 2021-05-19
    Description: The project of "Assessment of different methods of water treatment on decreasing pathogenic bacteria in shrimp hatcheries" achieved by mean of reviewing the effectiveness of various methods on the water treatment to reduce bacterial load of sea water. The project performed in Bandargah region of Bushehr province in order to checking the effect of different methods on the sea water and bacterial population. This project has been done over a year. In this study a total of 138 samples was collected during seven times and was evaluated as well as 7 treatments. In this study, the comparison of the effect of each factors (sand filter, chlorine, ultra violet ray, chlorine combined with ultra violet ray) was analyzed on the sea water by means of disinfection. During this study, other environmental factors such as water temperature, dissolved oxygen, pH and salinity was measured till we can ensure that they don’t have any negative impact on the treatments. Results showed that the density of total bacteria in sea water (Control) was averagely 5187 CFU/ml, this was done while the total density of bacteria in the sea water, reservation pool sample, sand filter water, water that irradiated with ultraviolet rays, chlorinated water and the water that was influenced by both chlorine and ultra violet ray was respectively 5187 2137, 4449 2042, 2782 1335, 1164 692, 143 104, 87 76 CFU/ml. Therefore, reservation pool, sand filter, ultra violet ray, chlorine, chlorine-ultra violet ray each of them was reduce respectively 14, 46, 77, 97, 98 percent of the density of total bacteria or in other words they reduced 0.06, 0.27, 0.65, 1.56, 1.77 log of the total population of bacteria in water. Moreover, the results from the total count of vibrios showed that reservation pool, sand filter, ultra violet ray, chlorine, chlorine-ultra violet ray each of them was reduce respectively 17, 47, 74, 98, 99 percent of the density of total vibrios or in other words they reduced respectively 0.08, 0.27, 0.59, 1.66, and 1.95 log of the total population of vibrios in sea water. Also the bacteria that isolated from each treatment were identified with the use of biochemical methods that totally were includes a wide range of bacteria, the identified vibrios were: Vibrio alginolyticus, V. costicola, V. fischeri, V. fluvialis I, V. fluvialis II, V. harveyi, V. natriegens, V. nigripulchritudo, V. parahaemolyticus, V. plagius I, V. vulnificus, V. anguilarum I, V. campbellii, V. nereis, V. proteolyticus, V. splendidus, and Unknown V. spp. Other identified bacteria belonging to the following genus: Acinetobacter, Aeromonas, Alcaligenes, Bacillus, Borkholderia, Eschricia, Enteroacter, Flavobacterium, Micococcus, Proteus, Pseudomonas, Serratia, Staphaphylococcus, Streptococcus, and Unknown Bacteria spp. By comparing the results, we concluded that the best result was related to treatment that the sea water had been disinfected after the combined effects of chlorine and ultraviolet ray. It was determined that this process in compared with other treatments, had been reduced the total number of bacteria, the total number of Vibrios, the number of sucrose fermentative vibrios, and the number of non-sucrose fermentative vibrios respectively 98, 99, 98, 99 percent. In other words, the number of bacteria was reduced respectively 1.77, 1.94, 1.82, 2.23 log. So in this study, the applied method was introduced as the most effective way of disinfecting sea water. Meanwhile, none of pathogenic bacteria for shrimp including Vibrio harveyi was isolated by using this treatment. Comparing the results showed that the combined effects of chlorine and ultraviolet radiation is the most effective applied method for disinfecting sea water.
    Description: Iranian Fisheries Science Research Institute
    Description: Published
    Keywords: Shrimp ; Water treatment ; Sea water ; Bacteria ; Hatchery ; Assessment ; Population ; Temperature ; Dissolved oxygen ; pH ; Salinity
    Repository Name: AquaDocs
    Type: Report , Refereed
    Format: 84pp.
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  • 19
    Publication Date: 2021-05-19
    Description: The "fisheries and aquaculture industry innovation system" is one of the subsystems of Agricultural innovation system (AIS), also has many characteristics of that system .Since this section contains most of the components and AIS institutions, it can be examined as a part of the national innovation system. Due to the structure of the innovation system in the fishery system, a set of functions and institutions of this system are most important .It is therefore important that the system be analyzed and by reviewing the existing state institutions and functions of this system, the main problems and challenges identified. Understanding of the institutions and functions of fishery innovation system and analyze its problems and provide an improved model for fishery innovation system, is most activity in shaping major policy innovation in fishery sector. This step is very important to conduct innovative activities in the fishery sector. In this study, using a system perspective, the current status of the various factors affecting fishery development was assessed and the main drivers and challenges and solutions to improve the detection and analysis was provided. The results show that during the past eighty years, a number of research centers and educational institutions in the public sector have been developed .but this system, despite having considerable institutional capacity, is still in the middle stages of institutional development. In these years, the policy approach was linear, not system approach, so little attention has been to the development of science and technology intermediary institutions, coordinator organizations, venture capital funds, and the institutions of technology transfer ,particularly in the public sector.
    Description: Iranian Fisheries Science Research Institute
    Description: Published
    Keywords: Fisheries ; Aquaculture ; Agricultural innovation system ; AIS
    Repository Name: AquaDocs
    Type: Report , Refereed
    Format: 112pp.
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  • 20
    Publication Date: 2021-05-19
    Description: At present, the aquaculture industry to provide proper instructions in the field of health management, including production of Specific Pathogen Free shrimp (SPF), require sensitive and reliable methods for the detection and identification of pathogenic microorganisms. Molecular methods which used in the detection of microorganisms have a high discriminatory power in the taxonomy and in relation to libraries in the world. On the other hand, the accurate identification of microorganisms, providing the genetic data bank of shrimp pathogens and maintenance of these strains is the step to promote further research on the mechanisms of pathogenesis of pathogens, diagnosis, treatment, prevention of disease, identify indigenous production kits, diagnosis re emerging and emerging diseases and their origin. Therefore, in this project, by using ribotyping technique, native isolated pathogenic bacteria and fungi were identified and recorded in the gene bank database center. During sampling of shrimp and water of Specific Pathogen Free shrimp center, 40 bacterial strains were isolated, which 8 of them had the most frequency and identification based on 16S rDNA sequencing was performed. Bacteria identified are: Vibrio nigripulchritudo strain IS013(GenBank:KP843725), Vibrio brasiliensis strain IS014 (GenBank:KR186076), Vibrio rotiferianus strain IS015 (GenBank:KR186077), Vibrio azureus strain IS012 (GenBank:KJ018724.1), Vibrio owensii strain IS016 (GenBank:KR186078), Agarivorans gilvus strain IS017 (GenBank:KR186079), Vibrio brasiliensis IS018 (GenBank:KR186080) and Vibrio alginolyticus strain IS019 (GenBank:1817854), which were recorded in The World Bank genes. In this study fungal isolates were not detected.
    Description: Iranian Fisheries Science Research Institute
    Description: Published
    Keywords: Bacteria ; Fungi ; Ribotyping ; 16S rDNA ; Shrimp ; Specific pathogen free ; Vibrio rotiferianus ; Vibrio owensii ; Vibrio brasiliensis ; Vibrio azureus ; Agarivorans gilvus ; Vibrio alginolyticus ; GenBank
    Repository Name: AquaDocs
    Type: Report , Refereed
    Format: 64pp.
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