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  • Articles  (111)
  • Biomass
  • Nature Publishing Group (NPG)  (110)
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  • Articles  (111)
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  • 1
    Publication Date: 2022-11-18
    Description: © The Author(s), 2021. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Tian, Y., Liu, X., Li, J., Deng, Y., DeGiorgis, J. A., Zhou, S., Caratenuto, A., Minus, M. L., Wan, Y., Xiao, G., & Zheng, Y. Farm-waste-derived recyclable photothermal evaporator. Cell Reports Physical Science, 2(9), (2021): 100549, https://doi.org/10.1016./j.xcrp.2021.100549
    Description: Interfacial solar steam generation is emerging as a promising technique for efficient desalination. Although increasing efforts have been made, challenges exist for achieving a balance among a plethora of performance indicators—for example, rapid evaporation, durability, low-cost deployment, and salt rejection. Here, we demonstrate that carbonized manure can convert 98% of sunlight into heat, and the strong capillarity of porous carbon fibers networks pumps sufficient water to evaporation interfaces. Salt diffusion within microchannels enables quick salt drainage to the bulk seawater to prevent salt accumulation. With these advantages, this biomass-derived evaporator is demonstrated to feature a high evaporation rate of 2.81 kg m−2 h−1 under 1 sun with broad robustness to acidity and alkalinity. These advantages, together with facial deployment, offer an approach for converting farm waste to energy with high efficiency and easy implementation, which is particularly well suited for developing regions.
    Description: This project is supported by the National Science Foundation through grant no. CBET-1941743. This project is based upon work supported in part by the National Science Foundation under EPSCoR Cooperative Agreement no. OIA-1655221.
    Keywords: Biomass ; Recyclable ; Manure ; Farm waste ; Photothermal evaporation ; Desalination
    Repository Name: Woods Hole Open Access Server
    Type: Article
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  • 2
    Publication Date: 2010-11-19
    Description: Biodiversity indicators provide a vital window on the state of the planet, guiding policy development and management. The most widely adopted marine indicator is mean trophic level (MTL) from catches, intended to detect shifts from high-trophic-level predators to low-trophic-level invertebrates and plankton-feeders. This indicator underpins reported trends in human impacts, declining when predators collapse ("fishing down marine food webs") and when low-trophic-level fisheries expand ("fishing through marine food webs"). The assumption is that catch MTL measures changes in ecosystem MTL and biodiversity. Here we combine model predictions with global assessments of MTL from catches, trawl surveys and fisheries stock assessments and find that catch MTL does not reliably predict changes in marine ecosystems. Instead, catch MTL trends often diverge from ecosystem MTL trends obtained from surveys and assessments. In contrast to previous findings of rapid declines in catch MTL, we observe recent increases in catch, survey and assessment MTL. However, catches from most trophic levels are rising, which can intensify fishery collapses even when MTL trends are stable or increasing. To detect fishing impacts on marine biodiversity, we recommend greater efforts to measure true abundance trends for marine species, especially those most vulnerable to fishing.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Branch, Trevor A -- Watson, Reg -- Fulton, Elizabeth A -- Jennings, Simon -- McGilliard, Carey R -- Pablico, Grace T -- Ricard, Daniel -- Tracey, Sean R -- England -- Nature. 2010 Nov 18;468(7322):431-5. doi: 10.1038/nature09528.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉School of Aquatic and Fishery Sciences, Box 355020, University of Washington, Seattle, Washington 98195-5020, USA. tbranch@uw.edu〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/21085178" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Aquatic Organisms/*isolation & purification/*metabolism ; Biodiversity ; Biomass ; Databases, Factual ; *Ecosystem ; Environmental Policy ; *Fisheries ; *Fishes/metabolism ; Food Chain ; Human Activities ; Invertebrates/metabolism ; Models, Biological ; Plankton/metabolism
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  • 3
    Publication Date: 2010-06-29
    Description: The accumulation of species-specific enemies around adults is hypothesized to maintain plant diversity by limiting the recruitment of conspecific seedlings relative to heterospecific seedlings. Although previous studies in forested ecosystems have documented patterns consistent with the process of negative feedback, these studies are unable to address which classes of enemies (for example, pathogens, invertebrates, mammals) exhibit species-specific effects strong enough to generate negative feedback, and whether negative feedback at the level of the individual tree is sufficient to influence community-wide forest composition. Here we use fully reciprocal shade-house and field experiments to test whether the performance of conspecific tree seedlings (relative to heterospecific seedlings) is reduced when grown in the presence of enemies associated with adult trees. Both experiments provide strong evidence for negative plant-soil feedback mediated by soil biota. In contrast, above-ground enemies (mammals, foliar herbivores and foliar pathogens) contributed little to negative feedback observed in the field. In both experiments, we found that tree species that showed stronger negative feedback were less common as adults in the forest community, indicating that susceptibility to soil biota may determine species relative abundance in these tropical forests. Finally, our simulation models confirm that the strength of local negative feedback that we measured is sufficient to produce the observed community-wide patterns in tree-species relative abundance. Our findings indicate that plant-soil feedback is an important mechanism that can maintain species diversity and explain patterns of tree-species relative abundance in tropical forests.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Mangan, Scott A -- Schnitzer, Stefan A -- Herre, Edward A -- Mack, Keenan M L -- Valencia, Mariana C -- Sanchez, Evelyn I -- Bever, James D -- R01 GM092660/GM/NIGMS NIH HHS/ -- England -- Nature. 2010 Aug 5;466(7307):752-5. doi: 10.1038/nature09273.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Biological Sciences, University of Wisconsin-Milwaukee, Wisconsin 53201, USA. smangan37@gmail.com〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/20581819" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; *Biodiversity ; Biomass ; Computer Simulation ; Feedback, Physiological ; Food Chain ; Insects/physiology ; Models, Biological ; Panama ; Population Density ; Seedlings/growth & development ; Soil/*analysis ; *Soil Microbiology ; Species Specificity ; Trees/*classification/*growth & development/microbiology/parasitology ; *Tropical Climate ; Vertebrates/physiology
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  • 4
    Publication Date: 2008-02-08
    Description: Rates of atmospheric deposition of biologically active nitrogen (N) are two to seven times the pre-industrial rates in many developed nations because of combustion of fossil fuels and agricultural fertilization. They are expected to increase similarly over the next 50 years in industrializing nations of Asia and South America. Although the environmental impacts of high rates of nitrogen addition have been well studied, this is not so for the lower, chronic rates that characterize much of the globe. Here we present results of the first multi-decadal experiment to examine the impacts of chronic, experimental nitrogen addition as low as 10 kg N ha(-1) yr(-1) above ambient atmospheric nitrogen deposition (6 kg N ha(-1) yr(-1) at our site). This total input rate is comparable to terrestrial nitrogen deposition in many industrialized nations. We found that this chronic low-level nitrogen addition rate reduced plant species numbers by 17% relative to controls receiving ambient N deposition. Moreover, species numbers were reduced more per unit of added nitrogen at lower addition rates, suggesting that chronic but low-level nitrogen deposition may have a greater impact on diversity than previously thought. A second experiment showed that a decade after cessation of nitrogen addition, relative plant species number, although not species abundances, had recovered, demonstrating that some effects of nitrogen addition are reversible.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Clark, Christopher M -- Tilman, David -- England -- Nature. 2008 Feb 7;451(7179):712-5. doi: 10.1038/nature06503.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Ecology, Evolution and Behavior, 100 Ecology, 1987 Upper Buford Circle, University of Minnesota, St. Paul, Minnesota 55108, USA. clark134@umn.edu〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/18256670" target="_blank"〉PubMed〈/a〉
    Keywords: *Biodiversity ; Biomass ; *Ecosystem ; Nitrogen/*metabolism ; Plants/classification/*metabolism ; *Poaceae/metabolism ; Random Allocation ; Time Factors
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  • 5
    Publication Date: 2008-01-04
    Description: The carbon balance of terrestrial ecosystems is particularly sensitive to climatic changes in autumn and spring, with spring and autumn temperatures over northern latitudes having risen by about 1.1 degrees C and 0.8 degrees C, respectively, over the past two decades. A simultaneous greening trend has also been observed, characterized by a longer growing season and greater photosynthetic activity. These observations have led to speculation that spring and autumn warming could enhance carbon sequestration and extend the period of net carbon uptake in the future. Here we analyse interannual variations in atmospheric carbon dioxide concentration data and ecosystem carbon dioxide fluxes. We find that atmospheric records from the past 20 years show a trend towards an earlier autumn-to-winter carbon dioxide build-up, suggesting a shorter net carbon uptake period. This trend cannot be explained by changes in atmospheric transport alone and, together with the ecosystem flux data, suggest increasing carbon losses in autumn. We use a process-based terrestrial biosphere model and satellite vegetation greenness index observations to investigate further the observed seasonal response of northern ecosystems to autumnal warming. We find that both photosynthesis and respiration increase during autumn warming, but the increase in respiration is greater. In contrast, warming increases photosynthesis more than respiration in spring. Our simulations and observations indicate that northern terrestrial ecosystems may currently lose carbon dioxide in response to autumn warming, with a sensitivity of about 0.2 PgC degrees C(-1), offsetting 90% of the increased carbon dioxide uptake during spring. If future autumn warming occurs at a faster rate than in spring, the ability of northern ecosystems to sequester carbon may be diminished earlier than previously suggested.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Piao, Shilong -- Ciais, Philippe -- Friedlingstein, Pierre -- Peylin, Philippe -- Reichstein, Markus -- Luyssaert, Sebastiaan -- Margolis, Hank -- Fang, Jingyun -- Barr, Alan -- Chen, Anping -- Grelle, Achim -- Hollinger, David Y -- Laurila, Tuomas -- Lindroth, Anders -- Richardson, Andrew D -- Vesala, Timo -- England -- Nature. 2008 Jan 3;451(7174):49-52. doi: 10.1038/nature06444.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉LSCE, UMR CEA-CNRS, Batiment 709, CE, L'Orme des Merisiers, F-91191 Gif-sur-Yvette, France. slpiao@lsce.ipsl.fr〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/18172494" target="_blank"〉PubMed〈/a〉
    Keywords: Atmosphere/chemistry ; Biomass ; Carbon Dioxide/analysis/*metabolism ; Cell Respiration ; *Ecosystem ; Fossil Fuels ; Geography ; Greenhouse Effect ; History, 20th Century ; History, 21st Century ; Oceans and Seas ; Photosynthesis ; Plant Transpiration ; Plants/metabolism ; Rain ; *Seasons ; Soil/analysis ; *Temperature ; Water/metabolism
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  • 6
    Publication Date: 2008-09-12
    Description: Old-growth forests remove carbon dioxide from the atmosphere at rates that vary with climate and nitrogen deposition. The sequestered carbon dioxide is stored in live woody tissues and slowly decomposing organic matter in litter and soil. Old-growth forests therefore serve as a global carbon dioxide sink, but they are not protected by international treaties, because it is generally thought that ageing forests cease to accumulate carbon. Here we report a search of literature and databases for forest carbon-flux estimates. We find that in forests between 15 and 800 years of age, net ecosystem productivity (the net carbon balance of the forest including soils) is usually positive. Our results demonstrate that old-growth forests can continue to accumulate carbon, contrary to the long-standing view that they are carbon neutral. Over 30 per cent of the global forest area is unmanaged primary forest, and this area contains the remaining old-growth forests. Half of the primary forests (6 x 10(8) hectares) are located in the boreal and temperate regions of the Northern Hemisphere. On the basis of our analysis, these forests alone sequester about 1.3 +/- 0.5 gigatonnes of carbon per year. Thus, our findings suggest that 15 per cent of the global forest area, which is currently not considered when offsetting increasing atmospheric carbon dioxide concentrations, provides at least 10 per cent of the global net ecosystem productivity. Old-growth forests accumulate carbon for centuries and contain large quantities of it. We expect, however, that much of this carbon, even soil carbon, will move back to the atmosphere if these forests are disturbed.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Luyssaert, Sebastiaan -- Schulze, E-Detlef -- Borner, Annett -- Knohl, Alexander -- Hessenmoller, Dominik -- Law, Beverly E -- Ciais, Philippe -- Grace, John -- England -- Nature. 2008 Sep 11;455(7210):213-5. doi: 10.1038/nature07276.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Biology, University of Antwerp, 2610 Wilrijk, Belgium. sebastiaan.luyssaert@ua.ac.be〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/18784722" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Atmosphere/chemistry ; Biomass ; Carbon/*metabolism ; Carbon Dioxide/metabolism ; Databases, Factual ; Disasters ; *Ecosystem ; History, 15th Century ; History, 16th Century ; History, 17th Century ; History, 18th Century ; History, 19th Century ; History, 20th Century ; History, 21st Century ; History, Ancient ; History, Medieval ; Human Activities ; Time Factors ; Trees/*metabolism
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  • 7
    Publication Date: 2008-07-18
    Description: Aggregate community-level response to disturbance is a principle concern in ecology because post-disturbance dynamics are integral to the ability of ecosystems to maintain function in an uncertain world. Community-level responses to disturbance can be arrayed along a spectrum ranging from synchronous oscillations where all species rise and fall together, to compensatory dynamics where total biomass remains relatively constant despite fluctuations in the densities of individual species. An important recent insight is that patterns of synchrony and compensation can vary with the timescale of analysis and that spectral time series methods can enable detection of coherent dynamics that would otherwise be obscured by opposing patterns occurring at different scales. Here I show that application of wavelet analysis to experimentally manipulated plankton communities reveals strong synchrony after disturbance. The result is paradoxical because it is well established that these communities contain both disturbance-sensitive and disturbance-tolerant species leading to compensation within functional groups. Theory predicts that compensatory substitution of functionally equivalent species should stabilize ecological communities, yet I found at the whole-community level a large increase in seasonal biomass variation. Resolution of the paradox hinges on patterns of seasonality among species. The compensatory shift in community composition after disturbance resulted in a loss of cold-season dominants, which before disturbance had served to stabilize biomass throughout the year. Species dominating the disturbed community peaked coherently during the warm season, explaining the observed synchrony and increase in seasonal biomass variation. These results suggest that theory relating compensatory dynamics to ecological stability needs to consider not only complementarity in species responses to environmental change, but also seasonal complementarity among disturbance-tolerant and disturbance-sensitive species.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Keitt, Timothy H -- England -- Nature. 2008 Jul 17;454(7202):331-4. doi: 10.1038/nature06935.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Integrative Biology, University of Texas, Austin, Texas 78712, USA. tkeitt@mail.utexas.edu〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/18633416" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Biomass ; Crustacea/physiology ; *Ecosystem ; Fresh Water ; Hot Temperature ; Hydrogen-Ion Concentration ; Plankton/*physiology ; Population Dynamics ; Seasons ; Time Factors
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  • 8
    Publication Date: 2008-08-30
    Description: Viruses are the most abundant biological organisms of the world's oceans. Viral infections are a substantial source of mortality in a range of organisms-including autotrophic and heterotrophic plankton-but their impact on the deep ocean and benthic biosphere is completely unknown. Here we report that viral production in deep-sea benthic ecosystems worldwide is extremely high, and that viral infections are responsible for the abatement of 80% of prokaryotic heterotrophic production. Virus-induced prokaryotic mortality increases with increasing water depth, and beneath a depth of 1,000 m nearly all of the prokaryotic heterotrophic production is transformed into organic detritus. The viral shunt, releasing on a global scale approximately 0.37-0.63 gigatonnes of carbon per year, is an essential source of labile organic detritus in the deep-sea ecosystems. This process sustains a high prokaryotic biomass and provides an important contribution to prokaryotic metabolism, allowing the system to cope with the severe organic resource limitation of deep-sea ecosystems. Our results indicate that viruses have an important role in global biogeochemical cycles, in deep-sea metabolism and the overall functioning of the largest ecosystem of our biosphere.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Danovaro, Roberto -- Dell'Anno, Antonio -- Corinaldesi, Cinzia -- Magagnini, Mirko -- Noble, Rachel -- Tamburini, Christian -- Weinbauer, Markus -- England -- Nature. 2008 Aug 28;454(7208):1084-7. doi: 10.1038/nature07268.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Marine Science, Faculty of Science, Polytechnic University of Marche, Via Brecce Bianche, 60131 Ancona, Italy. r.danovaro@univpm.it〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/18756250" target="_blank"〉PubMed〈/a〉
    Keywords: Biomass ; Carbon/metabolism ; *Ecosystem ; Geologic Sediments/virology ; Heterotrophic Processes ; Hydrostatic Pressure ; Microbial Viability ; Oceans and Seas ; Prokaryotic Cells/cytology/metabolism/virology ; Seawater/*virology ; *Virus Physiological Phenomena ; Viruses/isolation & purification/metabolism
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  • 9
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    Nature Publishing Group (NPG)
    Publication Date: 2008-01-04
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Miller, John B -- England -- Nature. 2008 Jan 3;451(7174):26-7. doi: 10.1038/451026a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/18172488" target="_blank"〉PubMed〈/a〉
    Keywords: Atmosphere/*chemistry ; Biomass ; Carbon Dioxide/analysis/*metabolism ; *Ecosystem ; Fossil Fuels ; Geography ; Greenhouse Effect ; Oceans and Seas ; Plants/metabolism ; *Seasons ; Temperature
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  • 10
    Publication Date: 2008-08-22
    Description: Predicting the ocean's role in the global carbon cycle requires an understanding of the stoichiometric coupling between carbon and growth-limiting elements in biogeochemical processes. A recent addition to such knowledge is that the carbon/nitrogen ratio of inorganic consumption and release of dissolved organic matter may increase in a high-CO(2) world. This will, however, yield a negative feedback on atmospheric CO(2) only if the extra organic material escapes mineralization within the photic zone. Here we show, in the context of an Arctic pelagic ecosystem, how the fate and effects of added degradable organic carbon depend critically on the state of the microbial food web. When bacterial growth rate was limited by mineral nutrients, extra organic carbon accumulated in the system. When bacteria were limited by organic carbon, however, addition of labile dissolved organic carbon reduced phytoplankton biomass and activity and also the rate at which total organic carbon accumulated, explained as the result of stimulated bacterial competition for mineral nutrients. This counterintuitive 'more organic carbon gives less organic carbon' effect was particularly pronounced in diatom-dominated systems where the carbon/mineral nutrient ratio in phytoplankton production was high. Our results highlight how descriptions of present and future states of the oceanic carbon cycle require detailed understanding of the stoichiometric coupling between carbon and growth-limiting mineral nutrients in both autotrophic and heterotrophic processes.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Thingstad, T F -- Bellerby, R G J -- Bratbak, G -- Borsheim, K Y -- Egge, J K -- Heldal, M -- Larsen, A -- Neill, C -- Nejstgaard, J -- Norland, S -- Sandaa, R-A -- Skjoldal, E F -- Tanaka, T -- Thyrhaug, R -- Topper, B -- England -- Nature. 2008 Sep 18;455(7211):387-90. doi: 10.1038/nature07235. Epub 2008 Aug 20.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Biology, University of Bergen, Jahnebakken 5PO Box 7800, 5020 Bergen, Norway. frede.thingstad@bio.uib.no〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/18716617" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Arctic Regions ; Atmosphere/chemistry ; Autotrophic Processes/drug effects/radiation effects ; Bacteria/drug effects/growth & development/metabolism/radiation effects ; Biomass ; Carbon/*metabolism ; Carbon Dioxide/metabolism ; Diatoms/metabolism/radiation effects ; *Ecosystem ; Eutrophication ; Food Chain ; Glucose/metabolism/pharmacology ; Heterotrophic Processes/drug effects/radiation effects ; Phytoplankton/drug effects/growth & development/metabolism/radiation effects
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  • 11
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    Nature Publishing Group (NPG)
    Publication Date: 2008-08-16
    Description: The development of alternatives to fossil fuels as an energy source is an urgent global priority. Cellulosic biomass has the potential to contribute to meeting the demand for liquid fuel, but land-use requirements and process inefficiencies represent hurdles for large-scale deployment of biomass-to-biofuel technologies. Genomic information gathered from across the biosphere, including potential energy crops and microorganisms able to break down biomass, will be vital for improving the prospects of significant cellulosic biofuel production.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Rubin, Edward M -- England -- Nature. 2008 Aug 14;454(7206):841-5. doi: 10.1038/nature07190.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, California 94598, USA. emrubin@lbl.gov〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/18704079" target="_blank"〉PubMed〈/a〉
    Keywords: Biomass ; *Energy-Generating Resources ; *Genomics ; Lignin/chemistry/*metabolism ; Models, Chemical ; Solar Energy
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  • 12
    Publication Date: 2008-08-12
    Description: Planktonic algae 〈5 m in size are major fixers of inorganic carbon in the ocean. They dominate phytoplankton biomass in post-bloom, stratified oceanic temperate waters. Traditionally, large and small algae are viewed as having a critical growth dependence on inorganic nutrients, which the latter can better acquire at lower ambient concentrations owing to their higher surface area to volume ratios. Nonetheless, recent phosphate tracer experiments in the oligotrophic ocean have suggested that small algae obtain inorganic phosphate indirectly, possibly through feeding on bacterioplankton. There have been numerous microscopy-based studies of algae feeding mixotrophically in the laboratory and field as well as mathematical modelling of the ecological importance of mixotrophy. However, because of methodological limitations there has not been a direct comparison of obligate heterotrophic and mixotrophic bacterivory. Here we present direct evidence that small algae carry out 40-95% of the bacterivory in the euphotic layer of the temperate North Atlantic Ocean in summer. A similar range of 37-70% was determined in the surface waters of the tropical North-East Atlantic Ocean, suggesting the global significance of mixotrophy. This finding reveals that even the smallest algae have less dependence on dissolved inorganic nutrients than previously thought, obtaining a quarter of their biomass from bacterivory. This has important implications for how we perceive nutrient acquisition and limitation of carbon-fixing protists as well as control of bacterioplankton in the ocean.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Zubkov, Mikhail V -- Tarran, Glen A -- England -- Nature. 2008 Sep 11;455(7210):224-6. doi: 10.1038/nature07236.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉National Oceanography Centre, Southampton, Hampshire SO14 3ZH, UK. mvz@noc.soton.ac.uk〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/18690208" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Atlantic Ocean ; Bacteria/*metabolism ; Biomass ; Eukaryota/growth & development/*physiology ; Phytoplankton/growth & development/*physiology ; Plastids ; Seawater/*microbiology ; Ships
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  • 13
    Publication Date: 2008-03-14
    Description: Sulphur is a universally required cell nutrient found in two amino acids and other small organic molecules. All aerobic marine bacteria are known to use assimilatory sulphate reduction to supply sulphur for biosynthesis, although many can assimilate sulphur from organic compounds that contain reduced sulphur atoms. An analysis of three complete 'Candidatus Pelagibacter ubique' genomes, and public ocean metagenomic data sets, suggested that members of the ubiquitous and abundant SAR11 alphaproteobacterial clade are deficient in assimilatory sulphate reduction genes. Here we show that SAR11 requires exogenous sources of reduced sulphur, such as methionine or 3-dimethylsulphoniopropionate (DMSP) for growth. Titrations of the algal osmolyte DMSP in seawater medium containing all other macronutrients in excess showed that 1.5 x 10(8) SAR11 cells are produced per nanomole of DMSP. Although it has been shown that other marine alphaproteobacteria use sulphur from DMSP in preference to sulphate, our results indicate that 'Cand. P. ubique' relies exclusively on reduced sulphur compounds that originate from other plankton.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Tripp, H James -- Kitner, Joshua B -- Schwalbach, Michael S -- Dacey, John W H -- Wilhelm, Larry J -- Giovannoni, Stephen J -- England -- Nature. 2008 Apr 10;452(7188):741-4. doi: 10.1038/nature06776. Epub 2008 Mar 12.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Microbiology, 220 Nash Hall, Oregon State University, Corvallis, Oregon 97331, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/18337719" target="_blank"〉PubMed〈/a〉
    Keywords: Aerobiosis ; Alphaproteobacteria/drug effects/genetics/*growth & development/*metabolism ; Biomass ; Eukaryota/metabolism ; Genome, Bacterial/genetics ; Genomics ; Methionine/metabolism/pharmacology ; Oxidation-Reduction ; Plankton/metabolism ; Seawater/chemistry/*microbiology ; Sulfonium Compounds/metabolism/pharmacology ; Sulfur/*metabolism/pharmacology
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  • 14
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    Nature Publishing Group (NPG)
    Publication Date: 2008-08-30
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Ledford, Heidi -- England -- Nature. 2008 Aug 28;454(7208):1038. doi: 10.1038/4541038a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/18756220" target="_blank"〉PubMed〈/a〉
    Keywords: Archaea/chemistry/isolation & purification/virology ; Bacteria/chemistry/isolation & purification/virology ; *Biodiversity ; Biomass ; Carbon/metabolism ; *Ecosystem ; Geologic Sediments/chemistry/*microbiology/*virology ; Marine Biology ; Oceans and Seas ; *Seawater/analysis/chemistry/microbiology/virology ; Water Movements
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  • 15
    Publication Date: 2008-11-21
    Description: Many species are currently moving to higher latitudes and altitudes. However, little is known about the factors that influence the future performance of range-expanding species in their new habitats. Here we show that range-expanding plant species from a riverine area were better defended against shoot and root enemies than were related native plant species growing in the same area. We grew fifteen plant species with and without non-coevolved polyphagous locusts and cosmopolitan, polyphagous aphids. Contrary to our expectations, the locusts performed more poorly on the range-expanding plant species than on the congeneric native plant species, whereas the aphids showed no difference. The shoot herbivores reduced the biomass of the native plants more than they did that of the congeneric range expanders. Also, the range-expanding plants developed fewer pathogenic effects in their root-zone soil than did the related native species. Current predictions forecast biodiversity loss due to limitations in the ability of species to adjust to climate warming conditions in their range. Our results strongly suggest that the plants that shift ranges towards higher latitudes and altitudes may include potential invaders, as the successful range expanders may experience less control by above-ground or below-ground enemies than the natives.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Engelkes, Tim -- Morrien, Elly -- Verhoeven, Koen J F -- Bezemer, T Martijn -- Biere, Arjen -- Harvey, Jeffrey A -- McIntyre, Lauren M -- Tamis, Wil L M -- van der Putten, Wim H -- England -- Nature. 2008 Dec 18;456(7224):946-8. doi: 10.1038/nature07474. Epub 2008 Nov 19.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Multitrophic Interactions, Netherlands Institute of Ecology (NIOO-KNAW), PO Box 40, 6666 ZG Heteren, The Netherlands.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19020504" target="_blank"〉PubMed〈/a〉
    Keywords: Adaptation, Physiological/*physiology ; Altitude ; Animals ; Aphids/physiology ; Biodiversity ; Biomass ; *Ecosystem ; *Feeding Behavior ; Grasshoppers/physiology ; Plant Roots/*physiology ; Plant Shoots/*physiology ; Rivers ; Soil ; Temperature
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  • 16
    Publication Date: 2008-04-19
    Description: It is now clear that fished populations can fluctuate more than unharvested stocks. However, it is not clear why. Here we distinguish among three major competing mechanisms for this phenomenon, by using the 50-year California Cooperative Oceanic Fisheries Investigations (CalCOFI) larval fish record. First, variable fishing pressure directly increases variability in exploited populations. Second, commercial fishing can decrease the average body size and age of a stock, causing the truncated population to track environmental fluctuations directly. Third, age-truncated or juvenescent populations have increasingly unstable population dynamics because of changing demographic parameters such as intrinsic growth rates. We find no evidence for the first hypothesis, limited evidence for the second and strong evidence for the third. Therefore, in California Current fisheries, increased temporal variability in the population does not arise from variable exploitation, nor does it reflect direct environmental tracking. More fundamentally, it arises from increased instability in dynamics. This finding has implications for resource management as an empirical example of how selective harvesting can alter the basic dynamics of exploited populations, and lead to unstable booms and busts that can precede systematic declines in stock levels.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Anderson, Christian N K -- Hsieh, Chih-hao -- Sandin, Stuart A -- Hewitt, Roger -- Hollowed, Anne -- Beddington, John -- May, Robert M -- Sugihara, George -- England -- Nature. 2008 Apr 17;452(7189):835-9. doi: 10.1038/nature06851.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Scripps Institution of Oceanography, University of California, San Diego, La Jolla, California 92093, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/18421346" target="_blank"〉PubMed〈/a〉
    Keywords: Age Distribution ; Age Factors ; Animals ; Biomass ; Body Size ; California ; Ecosystem ; *Fisheries ; Fishes/anatomy & histology/growth & development/*physiology ; Larva/growth & development/physiology ; *Models, Biological ; Population Dynamics ; Survival Analysis
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  • 17
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    Nature Publishing Group (NPG)
    Publication Date: 2008-02-08
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Armand, M -- Tarascon, J-M -- England -- Nature. 2008 Feb 7;451(7179):652-7. doi: 10.1038/451652a.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉LRCS, CNRS UMR-6007, Universite de Picardie Jules Verne, Amiens, France.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/18256660" target="_blank"〉PubMed〈/a〉
    Keywords: Air ; Automobiles/history ; Bioelectric Energy Sources/economics/history/trends ; Biomass ; Biomimetics ; Cell Phones/history ; Conservation of Energy Resources/economics/history/*methods/*trends ; Electrochemistry/economics/history ; Electronics/economics/history/trends ; History, 19th Century ; History, 20th Century ; History, 21st Century ; Lithium/chemistry ; Nanotechnology/trends ; Oxygen/chemistry
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  • 18
    Publication Date: 2009-07-10
    Description: Many aspects of the carbon cycle can be assessed from temporal changes in the (13)C/(12)C ratio of oceanic bicarbonate. (13)C/(12)C can temporarily rise when large amounts of (13)C-depleted photosynthetic organic matter are buried at enhanced rates, and can decrease if phytomass is rapidly oxidized or if low (13)C is rapidly released from methane clathrates. Assuming that variations of the marine (13)C/(12)C ratio are directly recorded in carbonate rocks, thousands of carbon isotope analyses of late Precambrian examples have been published to correlate these otherwise undatable strata and to document perturbations to the carbon cycle just before the great expansion of metazoan life. Low (13)C/(12)C in some Neoproterozoic carbonates is considered evidence of carbon cycle perturbations unique to the Precambrian. These include complete oxidation of all organic matter in the ocean and complete productivity collapse such that low-(13)C/(12)C hydrothermal CO(2) becomes the main input of carbon. Here we compile all published oxygen and carbon isotope data for Neoproterozoic marine carbonates, and consider them in terms of processes known to alter the isotopic composition during transformation of the initial precipitate into limestone/dolostone. We show that the combined oxygen and carbon isotope systematics are identical to those of well-understood Phanerozoic examples that lithified in coastal pore fluids, receiving a large groundwater influx of photosynthetic carbon from terrestrial phytomass. Rather than being perturbations to the carbon cycle, widely reported decreases in (13)C/(12)C in Neoproterozoic carbonates are more easily interpreted in the same way as is done for Phanerozoic examples. This influx of terrestrial carbon is not apparent in carbonates older than approximately 850 Myr, so we infer an explosion of photosynthesizing communities on late Precambrian land surfaces. As a result, biotically enhanced weathering generated carbon-bearing soils on a large scale and their detrital sedimentation sequestered carbon. This facilitated a rise in O(2) necessary for the expansion of multicellular life.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Knauth, L Paul -- Kennedy, Martin J -- England -- Nature. 2009 Aug 6;460(7256):728-32. doi: 10.1038/nature08213. Epub 2009 Jul 8.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉School of Earth and Space Exploration, Arizona State University, Tempe, Arizona 85287-1404, USA. Knauth@asu.edu〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19587681" target="_blank"〉PubMed〈/a〉
    Keywords: Biomass ; Calcium Carbonate/chemistry ; Carbon/chemistry/*metabolism ; Carbon Isotopes ; Carbonates/*analysis/*chemistry ; Earth (Planet) ; Geologic Sediments/*chemistry ; History, Ancient ; Magnesium/chemistry ; Oceans and Seas ; Oxygen/analysis/metabolism ; Oxygen Isotopes ; *Photosynthesis ; Plants/metabolism
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  • 19
    Publication Date: 2009-02-20
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Muller-Landau, Helene C -- England -- Nature. 2009 Feb 19;457(7232):969-70. doi: 10.1038/457969a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19225510" target="_blank"〉PubMed〈/a〉
    Keywords: Africa ; Atmosphere/chemistry ; Biomass ; Carbon/analysis/*metabolism ; Carbon Dioxide/analysis/metabolism ; Models, Biological ; Trees/chemistry/growth & development/*metabolism ; *Tropical Climate ; Wilderness
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  • 20
    Publication Date: 2009-04-03
    Description: Explaining the ecological causes of evolutionary diversification is a major focus of biology, but surprisingly little has been said about the effects of evolutionary diversification on ecosystems. The number of species in an ecosystem and their traits are key predictors of many ecosystem-level processes, such as rates of productivity, biomass sequestration and decomposition. Here we demonstrate short-term ecosystem-level effects of adaptive radiation in the threespine stickleback (Gasterosteus aculeatus) over the past 10,000 years. These fish have undergone recent parallel diversification in several lakes in coastal British Columbia, resulting in the formation of two specialized species (benthic and limnetic) from a generalist ancestor. Using a mesocosm experiment, we demonstrate that this diversification has strong effects on ecosystems, affecting prey community structure, total primary production, and the nature of dissolved organic materials that regulate the spectral properties of light transmission in the system. However, these ecosystem effects do not simply increase in their relative strength with increasing specialization and species richness; instead, they reflect the complex and indirect consequences of ecosystem engineering by sticklebacks. It is well known that ecological factors influence adaptive radiation. We demonstrate that adaptive radiation, even over short timescales, can have profound effects on ecosystems.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Harmon, Luke J -- Matthews, Blake -- Des Roches, Simone -- Chase, Jonathan M -- Shurin, Jonathan B -- Schluter, Dolph -- England -- Nature. 2009 Apr 30;458(7242):1167-70. doi: 10.1038/nature07974. Epub 2009 Apr 1.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Biological Sciences, University of Idaho, Moscow, Idaho 83844-3051, USA. lukeh@uidaho.edu〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19339968" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Biodiversity ; *Biological Evolution ; Biomass ; British Columbia ; *Ecosystem ; Fishes/*classification/*physiology ; Food Chain ; Fresh Water ; Genetic Speciation ; Models, Biological ; Population Density ; Predatory Behavior
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  • 21
    Publication Date: 2009-09-18
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Feagin, Rusty -- England -- Nature. 2009 Sep 17;461(7262):319. doi: 10.1038/461319e.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Texas A&M University, College Station, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19759583" target="_blank"〉PubMed〈/a〉
    Keywords: Biomass ; Carbon/*metabolism ; *Cyclonic Storms ; Disasters ; *Ecosystem ; Oceans and Seas ; Population Dynamics ; Trees/growth & development/*metabolism ; United States ; Wind
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  • 22
    Publication Date: 2009-02-20
    Description: The response of terrestrial vegetation to a globally changing environment is central to predictions of future levels of atmospheric carbon dioxide. The role of tropical forests is critical because they are carbon-dense and highly productive. Inventory plots across Amazonia show that old-growth forests have increased in carbon storage over recent decades, but the response of one-third of the world's tropical forests in Africa is largely unknown owing to an absence of spatially extensive observation networks. Here we report data from a ten-country network of long-term monitoring plots in African tropical forests. We find that across 79 plots (163 ha) above-ground carbon storage in live trees increased by 0.63 Mg C ha(-1) yr(-1) between 1968 and 2007 (95% confidence interval (CI), 0.22-0.94; mean interval, 1987-96). Extrapolation to unmeasured forest components (live roots, small trees, necromass) and scaling to the continent implies a total increase in carbon storage in African tropical forest trees of 0.34 Pg C yr(-1) (CI, 0.15-0.43). These reported changes in carbon storage are similar to those reported for Amazonian forests per unit area, providing evidence that increasing carbon storage in old-growth forests is a pan-tropical phenomenon. Indeed, combining all standardized inventory data from this study and from tropical America and Asia together yields a comparable figure of 0.49 Mg C ha(-1) yr(-1) (n = 156; 562 ha; CI, 0.29-0.66; mean interval, 1987-97). This indicates a carbon sink of 1.3 Pg C yr(-1) (CI, 0.8-1.6) across all tropical forests during recent decades. Taxon-specific analyses of African inventory and other data suggest that widespread changes in resource availability, such as increasing atmospheric carbon dioxide concentrations, may be the cause of the increase in carbon stocks, as some theory and models predict.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Lewis, Simon L -- Lopez-Gonzalez, Gabriela -- Sonke, Bonaventure -- Affum-Baffoe, Kofi -- Baker, Timothy R -- Ojo, Lucas O -- Phillips, Oliver L -- Reitsma, Jan M -- White, Lee -- Comiskey, James A -- Djuikouo K, Marie-Noel -- Ewango, Corneille E N -- Feldpausch, Ted R -- Hamilton, Alan C -- Gloor, Manuel -- Hart, Terese -- Hladik, Annette -- Lloyd, Jon -- Lovett, Jon C -- Makana, Jean-Remy -- Malhi, Yadvinder -- Mbago, Frank M -- Ndangalasi, Henry J -- Peacock, Julie -- Peh, Kelvin S-H -- Sheil, Douglas -- Sunderland, Terry -- Swaine, Michael D -- Taplin, James -- Taylor, David -- Thomas, Sean C -- Votere, Raymond -- Woll, Hannsjorg -- England -- Nature. 2009 Feb 19;457(7232):1003-6. doi: 10.1038/nature07771.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Earth and Biosphere Institute, School of Geography, University of Leeds, Leeds LS2 9JT, UK. s.l.lewis@leeds.ac.uk〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19225523" target="_blank"〉PubMed〈/a〉
    Keywords: Africa ; Atmosphere/chemistry ; Biomass ; Carbon/analysis/*metabolism ; Carbon Dioxide/analysis/metabolism ; Models, Biological ; Trees/anatomy & histology/chemistry/growth & development/*metabolism ; *Tropical Climate ; Wilderness ; Wood/analysis/chemistry
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  • 23
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    Nature Publishing Group (NPG)
    Publication Date: 2009-10-23
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Lincoln, Tim -- England -- Nature. 2009 Oct 22;461(7267):1066. doi: 10.1038/4611066a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19847253" target="_blank"〉PubMed〈/a〉
    Keywords: Biomass ; California ; Ecosystem ; History, Ancient ; Kelp/*growth & development ; Marine Biology ; Population Dynamics
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  • 24
    Publication Date: 2009-07-03
    Description: Environmental conditions during the past 24 million years are thought to have been favourable for enhanced rates of atmospheric carbon dioxide drawdown by silicate chemical weathering. Proxy records indicate, however, that the Earth's atmospheric carbon dioxide concentrations did not fall below about 200-250 parts per million during this period. The stabilization of atmospheric carbon dioxide concentrations near this minimum value suggests that strong negative feedback mechanisms inhibited further drawdown of atmospheric carbon dioxide by high rates of global silicate rock weathering. Here we investigate one possible negative feedback mechanism, occurring under relatively low carbon dioxide concentrations and in warm climates, that is related to terrestrial plant productivity and its role in the decomposition of silicate minerals. We use simulations of terrestrial and geochemical carbon cycles and available experimental evidence to show that vegetation activity in upland regions of active orogens was severely limited by near-starvation of carbon dioxide in combination with global warmth over this period. These conditions diminished biotic-driven silicate rock weathering and thereby attenuated an important long-term carbon dioxide sink. Although our modelling results are semi-quantitative and do not capture the full range of biogeochemical feedbacks that could influence the climate, our analysis indicates that the dynamic equilibrium between plants, climate and the geosphere probably buffered the minimum atmospheric carbon dioxide concentrations over the past 24 million years.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Pagani, Mark -- Caldeira, Ken -- Berner, Robert -- Beerling, David J -- England -- Nature. 2009 Jul 2;460(7251):85-8. doi: 10.1038/nature08133.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Geology and Geophysics, Yale University, New Haven, Connecticut 06520, USA. mark.pagani@yale.edu〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19571882" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Atmosphere/*chemistry ; Biomass ; Carbon Dioxide/*analysis ; Climate ; Eukaryota ; Geologic Sediments/*chemistry ; Geology ; History, Ancient ; Ice Cover ; Models, Biological ; Plant Leaves/metabolism ; Plant Roots/growth & development ; Plant Transpiration ; Plants/*metabolism ; Silicates/*chemistry
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  • 25
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    Nature Publishing Group (NPG)
    Publication Date: 2009-08-14
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Penuelas, Josep -- Sardans, Jordi -- England -- Nature. 2009 Aug 13;460(7257):803-4. doi: 10.1038/460803a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19675634" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Bacteria/growth & development/metabolism ; Biomass ; *Body Size ; Carbon/analysis/metabolism ; *Food Chain ; Fungi/growth & development/metabolism ; Invertebrates/anatomy & histology/growth & development/metabolism ; *Models, Biological ; Netherlands ; Nitrogen/analysis/metabolism ; Phosphorus/analysis/metabolism ; Soil/parasitology ; Soil Microbiology
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  • 26
    Publication Date: 2009-12-17
    Description: Biota can be described in terms of elemental composition, expressed as an atomic ratio of carbon:nitrogen:phosphorus (refs 1-3). The elemental stoichiometry of microoorganisms is fundamental for understanding the production dynamics and biogeochemical cycles of ecosystems because microbial biomass is the trophic base of detrital food webs. Here we show that heterotrophic microbial communities of diverse composition from terrestrial soils and freshwater sediments share a common functional stoichiometry in relation to organic nutrient acquisition. The activities of four enzymes that catalyse the hydrolysis of assimilable products from the principal environmental sources of C, N and P show similar scaling relationships over several orders of magnitude, with a mean ratio for C:N:P activities near 1:1:1 in all habitats. We suggest that these ecoenzymatic ratios reflect the equilibria between the elemental composition of microbial biomass and detrital organic matter and the efficiencies of microbial nutrient assimilation and growth. Because ecoenzymatic activities intersect the stoichiometric and metabolic theories of ecology, they provide a functional measure of the threshold at which control of community metabolism shifts from nutrient to energy flow.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Sinsabaugh, Robert L -- Hill, Brian H -- Follstad Shah, Jennifer J -- England -- Nature. 2009 Dec 10;462(7274):795-8. doi: 10.1038/nature08632.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Biology Department, University of New Mexico, Albuquerque, New Mexico 871312, USA. rlsinsab@unm.edu〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/20010687" target="_blank"〉PubMed〈/a〉
    Keywords: Biomass ; Carbon/*metabolism ; *Ecosystem ; Enzyme Assays ; Enzymes/*metabolism ; Food Chain ; Geologic Sediments/*chemistry/microbiology ; Nitrogen/*metabolism ; Phosphorus/*metabolism ; Plants/metabolism ; Rivers ; *Soil Microbiology ; United States ; Wetlands
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  • 27
    Publication Date: 2009-04-28
    Description: Global terrestrial ecosystems absorbed carbon at a rate of 1-4 Pg yr(-1) during the 1980s and 1990s, offsetting 10-60 per cent of the fossil-fuel emissions. The regional patterns and causes of terrestrial carbon sources and sinks, however, remain uncertain. With increasing scientific and political interest in regional aspects of the global carbon cycle, there is a strong impetus to better understand the carbon balance of China. This is not only because China is the world's most populous country and the largest emitter of fossil-fuel CO(2) into the atmosphere, but also because it has experienced regionally distinct land-use histories and climate trends, which together control the carbon budget of its ecosystems. Here we analyse the current terrestrial carbon balance of China and its driving mechanisms during the 1980s and 1990s using three different methods: biomass and soil carbon inventories extrapolated by satellite greenness measurements, ecosystem models and atmospheric inversions. The three methods produce similar estimates of a net carbon sink in the range of 0.19-0.26 Pg carbon (PgC) per year, which is smaller than that in the conterminous United States but comparable to that in geographic Europe. We find that northeast China is a net source of CO(2) to the atmosphere owing to overharvesting and degradation of forests. By contrast, southern China accounts for more than 65 per cent of the carbon sink, which can be attributed to regional climate change, large-scale plantation programmes active since the 1980s and shrub recovery. Shrub recovery is identified as the most uncertain factor contributing to the carbon sink. Our data and model results together indicate that China's terrestrial ecosystems absorbed 28-37 per cent of its cumulated fossil carbon emissions during the 1980s and 1990s.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Piao, Shilong -- Fang, Jingyun -- Ciais, Philippe -- Peylin, Philippe -- Huang, Yao -- Sitch, Stephen -- Wang, Tao -- England -- Nature. 2009 Apr 23;458(7241):1009-13. doi: 10.1038/nature07944.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Ecology, College of Urban and Environmental Science, and Key Laboratory for Earth Surface Processes of the Ministry of Education, Peking University, Beijing 100871, China. slpiao@pku.edu.cn〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19396142" target="_blank"〉PubMed〈/a〉
    Keywords: Atmosphere/chemistry ; Biomass ; Carbon/analysis/*metabolism ; Carbon Dioxide/analysis/chemistry/metabolism ; China ; *Ecosystem ; Forestry/history ; Fossil Fuels/*history ; History, 20th Century ; Soil/analysis ; Trees/metabolism
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  • 28
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    Nature Publishing Group (NPG)
    Publication Date: 2009-09-11
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Mascarelli, Amanda Leigh -- England -- Nature. 2009 Sep 10;461(7261):154-5. doi: 10.1038/461154a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19741673" target="_blank"〉PubMed〈/a〉
    Keywords: Biomass ; Conservation of Natural Resources/*methods/*trends ; Internationality ; Leadership ; United States ; Universities/*trends
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  • 29
    Publication Date: 2009-07-25
    Description: Productivity denotes the rate of biomass synthesis in ecosystems and is a fundamental characteristic that frames ecosystem function and management. Limitation of productivity by nutrient availability is an established paradigm for lake ecosystems. Here, we assess the relevance of this paradigm for a majority of the world's small, nutrient-poor lakes, with different concentrations of coloured organic matter. By comparing small unproductive lakes along a water colour gradient, we show that coloured terrestrial organic matter controls the key process for new biomass synthesis (the benthic primary production) through its effects on light attenuation. We also show that this translates into effects on production and biomass of higher trophic levels (benthic invertebrates and fish). These results are inconsistent with the idea that nutrient supply primarily controls lake productivity, and we propose that a large share of the world's unproductive lakes, within natural variations of organic carbon and nutrient input, are limited by light and not by nutrients. We anticipate that our result will have implications for understanding lake ecosystem function and responses to environmental change. Catchment export of coloured organic matter is sensitive to short-term natural variability and long-term, large-scale changes, driven by climate and different anthropogenic influences. Consequently, changes in terrestrial carbon cycling will have pronounced effects on most lake ecosystems by mediating changes in light climate and productivity of lakes.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Karlsson, Jan -- Bystrom, Par -- Ask, Jenny -- Ask, Per -- Persson, Lennart -- Jansson, Mats -- England -- Nature. 2009 Jul 23;460(7254):506-9. doi: 10.1038/nature08179.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Climate Impacts Research Centre, Department of Ecology and Environmental Science, Umea University, Box 62, SE-981 07 Abisko, Sweden. Jan.Karlsson@emg.umu.se〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19626113" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Biomass ; Carbon/analysis/metabolism ; *Ecosystem ; Eukaryota/physiology ; Fishes/physiology ; Fresh Water/*chemistry ; *Light ; Nitrogen/analysis ; Phosphorus/analysis ; Sweden
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  • 30
    Publication Date: 2010-11-05
    Description: The understanding of marine microbial ecology and metabolism has been hampered by the paucity of sequenced reference genomes. To this end, we report the sequencing of 137 diverse marine isolates collected from around the world. We analysed these sequences, along with previously published marine prokaryotic genomes, in the context of marine metagenomic data, to gain insights into the ecology of the surface ocean prokaryotic picoplankton (0.1-3.0 mum size range). The results suggest that the sequenced genomes define two microbial groups: one composed of only a few taxa that are nearly always abundant in picoplanktonic communities, and the other consisting of many microbial taxa that are rarely abundant. The genomic content of the second group suggests that these microbes are capable of slow growth and survival in energy-limited environments, and rapid growth in energy-rich environments. By contrast, the abundant and cosmopolitan picoplanktonic prokaryotes for which there is genomic representation have smaller genomes, are probably capable of only slow growth and seem to be relatively unable to sense or rapidly acclimate to energy-rich conditions. Their genomic features also lead us to propose that one method used to avoid predation by viruses and/or bacterivores is by means of slow growth and the maintenance of low biomass.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Yooseph, Shibu -- Nealson, Kenneth H -- Rusch, Douglas B -- McCrow, John P -- Dupont, Christopher L -- Kim, Maria -- Johnson, Justin -- Montgomery, Robert -- Ferriera, Steve -- Beeson, Karen -- Williamson, Shannon J -- Tovchigrechko, Andrey -- Allen, Andrew E -- Zeigler, Lisa A -- Sutton, Granger -- Eisenstadt, Eric -- Rogers, Yu-Hui -- Friedman, Robert -- Frazier, Marvin -- Venter, J Craig -- England -- Nature. 2010 Nov 4;468(7320):60-6. doi: 10.1038/nature09530.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉J. Craig Venter Institute, Rockville, Maryland 20850, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/21048761" target="_blank"〉PubMed〈/a〉
    Keywords: Aquatic Organisms/classification/*genetics/isolation & purification/virology ; Biodiversity ; Biomass ; Databases, Protein ; Genome, Bacterial/genetics ; *Genomics ; *Metagenome ; Models, Biological ; Oceans and Seas ; Phylogeny ; Plankton/*genetics/growth & development/isolation & purification/metabolism ; Prokaryotic Cells/classification/*metabolism/virology ; RNA, Ribosomal, 16S/genetics ; Water Microbiology
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  • 31
    Publication Date: 2010-04-24
    Description: The production of artificial fertilizers, fossil fuel use and leguminous agriculture worldwide has increased the amount of reactive nitrogen in the natural environment by an order of magnitude since the Industrial Revolution. This reorganization of the nitrogen cycle has led to an increase in food production, but increasingly causes a number of environmental problems. One such problem is the accumulation of nitrate in both freshwater and coastal marine ecosystems. Here we establish that ecosystem nitrate accrual exhibits consistent and negative nonlinear correlations with organic carbon availability along a hydrologic continuum from soils, through freshwater systems and coastal margins, to the open ocean. The trend also prevails in ecosystems subject to substantial human alteration. Across this diversity of environments, we find evidence that resource stoichiometry (organic carbon:nitrate) strongly influences nitrate accumulation by regulating a suite of microbial processes that couple dissolved organic carbon and nitrate cycling. With the help of a meta-analysis we show that heterotrophic microbes maintain low nitrate concentrations when organic carbon:nitrate ratios match the stoichiometric demands of microbial anabolism. When resource ratios drop below the minimum carbon:nitrogen ratio of microbial biomass, however, the onset of carbon limitation appears to drive rapid nitrate accrual, which may then be further enhanced by nitrification. At low organic carbon:nitrate ratios, denitrification appears to constrain the extent of nitrate accretion, once organic carbon and nitrate availability approach the 1:1 stoichiometry of this catabolic process. Collectively, these microbial processes express themselves on local to global scales by restricting the threshold ratios underlying nitrate accrual to a constrained stoichiometric window. Our findings indicate that ecological stoichiometry can help explain the fate of nitrate across disparate environments and in the face of human disturbance.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Taylor, Philip G -- Townsend, Alan R -- England -- Nature. 2010 Apr 22;464(7292):1178-81. doi: 10.1038/nature08985.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉INSTAAR, University of Colorado, Boulder, Colorado, USA. philip.taylor@colorado.edu〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/20414306" target="_blank"〉PubMed〈/a〉
    Keywords: Bacteria/metabolism ; Biomass ; Carbon/analysis/*metabolism ; Climate ; *Ecosystem ; Fresh Water/chemistry ; Freshwater Biology ; Marine Biology ; Nitrates/analysis/*metabolism ; Nitrogen/analysis/metabolism ; Oceans and Seas ; Plankton/metabolism ; Seawater/*chemistry ; Soil/*analysis
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  • 32
    Publication Date: 2010-04-09
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Leegood, Richard C -- Evans, John R -- Furbank, Robert T -- England -- Nature. 2010 Apr 8;464(7290):831. doi: 10.1038/464831d.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/20376125" target="_blank"〉PubMed〈/a〉
    Keywords: Agriculture/*methods/*trends ; Biomass ; Carbon Dioxide/metabolism ; Edible Grain/genetics/growth & development ; Food Supply/*standards ; Photosynthesis/genetics/physiology ; Ribulose-Bisphosphate Carboxylase/genetics/metabolism
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  • 33
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    Nature Publishing Group (NPG)
    Publication Date: 2010-07-24
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Fang, Janet -- England -- Nature. 2010 Jul 22;466(7305):432-4. doi: 10.1038/466432a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/20651669" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Arctic Regions ; *Biodiversity ; Biomass ; Birds/physiology ; Culicidae/classification/growth & development/parasitology/*physiology ; Female ; *Food Chain ; Forecasting ; Humans ; Insect Vectors/parasitology/*physiology ; Larva/physiology ; Male ; *Models, Biological ; Plants/metabolism ; Pollination/physiology ; Population Density
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  • 34
    Publication Date: 2010-06-04
    Description: Plants can defend themselves against a wide array of enemies, from microbes to large animals, yet there is great variability in the effectiveness of such defences, both within and between species. Some of this variation can be explained by conflicting pressures from pathogens with different modes of attack. A second explanation comes from an evolutionary 'tug of war', in which pathogens adapt to evade detection, until the plant has evolved new recognition capabilities for pathogen invasion. If selection is, however, sufficiently strong, susceptible hosts should remain rare. That this is not the case is best explained by costs incurred from constitutive defences in a pest-free environment. Using a combination of forward genetics and genome-wide association analyses, we demonstrate that allelic diversity at a single locus, ACCELERATED CELL DEATH 6 (ACD6), underpins marked pleiotropic differences in both vegetative growth and resistance to microbial infection and herbivory among natural Arabidopsis thaliana strains. A hyperactive ACD6 allele, compared to the reference allele, strongly enhances resistance to a broad range of pathogens from different phyla, but at the same time slows the production of new leaves and greatly reduces the biomass of mature leaves. This allele segregates at intermediate frequency both throughout the worldwide range of A. thaliana and within local populations, consistent with this allele providing substantial fitness benefits despite its marked impact on growth.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3055268/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3055268/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Todesco, Marco -- Balasubramanian, Sureshkumar -- Hu, Tina T -- Traw, M Brian -- Horton, Matthew -- Epple, Petra -- Kuhns, Christine -- Sureshkumar, Sridevi -- Schwartz, Christopher -- Lanz, Christa -- Laitinen, Roosa A E -- Huang, Yu -- Chory, Joanne -- Lipka, Volker -- Borevitz, Justin O -- Dangl, Jeffery L -- Bergelson, Joy -- Nordborg, Magnus -- Weigel, Detlef -- F23-GM65032-1/GM/NIGMS NIH HHS/ -- GM057171/GM/NIGMS NIH HHS/ -- GM057994/GM/NIGMS NIH HHS/ -- GM073822/GM/NIGMS NIH HHS/ -- GM62932/GM/NIGMS NIH HHS/ -- R01 GM062932/GM/NIGMS NIH HHS/ -- R01 GM062932-08/GM/NIGMS NIH HHS/ -- Howard Hughes Medical Institute/ -- England -- Nature. 2010 Jun 3;465(7298):632-6. doi: 10.1038/nature09083.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Molecular Biology, Max Planck Institute for Developmental Biology, 72076 Tubingen, Germany.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/20520716" target="_blank"〉PubMed〈/a〉
    Keywords: *Alleles ; Ankyrins/genetics/metabolism ; Arabidopsis/*genetics/growth & development/metabolism/microbiology ; Arabidopsis Proteins/genetics/metabolism ; Biomass ; Gene Expression Regulation, Plant ; Genes, Plant ; Genetic Fitness/*genetics ; Genetic Variation/*genetics ; Genome-Wide Association Study ; Molecular Sequence Data ; Phenotype ; Plant Diseases/genetics/microbiology ; Plant Leaves/anatomy & histology/genetics/growth & development/parasitology ; Quantitative Trait Loci
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  • 35
    Publication Date: 2010-07-03
    Description: Human activity can degrade ecosystem function by reducing species number (richness) and by skewing the relative abundance of species (evenness). Conservation efforts often focus on restoring or maintaining species number, reflecting the well-known impacts of richness on many ecological processes. In contrast, the ecological effects of disrupted evenness have received far less attention, and developing strategies for restoring evenness remains a conceptual challenge. In farmlands, agricultural pest-management practices often lead to altered food web structure and communities dominated by a few common species, which together contribute to pest outbreaks. Here we show that organic farming methods mitigate this ecological damage by promoting evenness among natural enemies. In field enclosures, very even communities of predator and pathogen biological control agents, typical of organic farms, exerted the strongest pest control and yielded the largest plants. In contrast, pest densities were high and plant biomass was low when enemy evenness was disrupted, as is typical under conventional management. Our results were independent of the numerically dominant predator or pathogen species, and so resulted from evenness itself. Moreover, evenness effects among natural enemy groups were independent and complementary. Our results strengthen the argument that rejuvenation of ecosystem function requires restoration of species evenness, rather than just richness. Organic farming potentially offers a means of returning functional evenness to ecosystems.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Crowder, David W -- Northfield, Tobin D -- Strand, Michael R -- Snyder, William E -- England -- Nature. 2010 Jul 1;466(7302):109-12. doi: 10.1038/nature09183.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Entomology, Washington State University, Pullman, Washington 99164, USA. dcrowder@wsu.edu〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/20596021" target="_blank"〉PubMed〈/a〉
    Keywords: Agriculture/*methods ; Animals ; Beetles/pathogenicity/physiology ; *Biodiversity ; Biomass ; Ecology/methods ; Food Chain ; Insects/pathogenicity/*physiology ; Pest Control, Biological/*methods ; Predatory Behavior/physiology ; Solanum tuberosum/*growth & development/microbiology ; Washington
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  • 36
    Publication Date: 2015-11-26
    Description: Drought threatens tropical rainforests over seasonal to decadal timescales, but the drivers of tree mortality following drought remain poorly understood. It has been suggested that reduced availability of non-structural carbohydrates (NSC) critically increases mortality risk through insufficient carbon supply to metabolism ('carbon starvation'). However, little is known about how NSC stores are affected by drought, especially over the long term, and whether they are more important than hydraulic processes in determining drought-induced mortality. Using data from the world's longest-running experimental drought study in tropical rainforest (in the Brazilian Amazon), we test whether carbon starvation or deterioration of the water-conducting pathways from soil to leaf trigger tree mortality. Biomass loss from mortality in the experimentally droughted forest increased substantially after 〉10 years of reduced soil moisture availability. The mortality signal was dominated by the death of large trees, which were at a much greater risk of hydraulic deterioration than smaller trees. However, we find no evidence that the droughted trees suffered carbon starvation, as their NSC concentrations were similar to those of non-droughted trees, and growth rates did not decline in either living or dying trees. Our results indicate that hydraulics, rather than carbon starvation, triggers tree death from drought in tropical rainforest.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Rowland, L -- da Costa, A C L -- Galbraith, D R -- Oliveira, R S -- Binks, O J -- Oliveira, A A R -- Pullen, A M -- Doughty, C E -- Metcalfe, D B -- Vasconcelos, S S -- Ferreira, L V -- Malhi, Y -- Grace, J -- Mencuccini, M -- Meir, P -- England -- Nature. 2015 Dec 3;528(7580):119-22. doi: 10.1038/nature15539. Epub 2015 Nov 23.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉School of GeoSciences, University of Edinburgh, Edinburgh EH9 3FF, UK. ; Centro de Geosciencias, Universidade Federal do Para, Belem 66075-110, Brazil. ; School of Geography, University of Leeds, Leeds LS2 9JT, UK. ; Instituto de Biologia, UNICAMP, Campinas 13.083-970, Brazil. ; The University of Cambridge, Cambridge CB2 1TN, UK. ; Environmental Change Institute, The University of Oxford, Oxford OX1 3QY, UK. ; Department of Physical Geography and Ecosystem Science, Lund University, Lund S-223 62, Sweden. ; EMBRAPA Amazonia Oriental, Belem 66095-903, Brazil. ; Museu Paraense Emilio Goeldi, Belem 66077-830, Brazil. ; ICREA at CREAF, 08193 Cerdanyola del Valles, Spain. ; Research School of Biology, Australian National University, Canberra, Australian Capital Territory 2601, Australia.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26595275" target="_blank"〉PubMed〈/a〉
    Keywords: Biomass ; Body Size ; Brazil ; Carbohydrate Metabolism ; Carbon/*metabolism ; *Droughts ; Plant Leaves/metabolism ; Plant Stems/metabolism ; *Rainforest ; Seasons ; Soil/chemistry ; Trees/growth & development/*metabolism ; *Tropical Climate ; Water/*metabolism ; Xylem/metabolism
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  • 37
    Publication Date: 2015-04-10
    Description: Continuing degradation of coral reef ecosystems has generated substantial interest in how management can support reef resilience. Fishing is the primary source of diminished reef function globally, leading to widespread calls for additional marine reserves to recover fish biomass and restore key ecosystem functions. Yet there are no established baselines for determining when these conservation objectives have been met or whether alternative management strategies provide similar ecosystem benefits. Here we establish empirical conservation benchmarks and fish biomass recovery timelines against which coral reefs can be assessed and managed by studying the recovery potential of more than 800 coral reefs along an exploitation gradient. We show that resident reef fish biomass in the absence of fishing (B0) averages approximately 1,000 kg ha(-1), and that the vast majority (83%) of fished reefs are missing more than half their expected biomass, with severe consequences for key ecosystem functions such as predation. Given protection from fishing, reef fish biomass has the potential to recover within 35 years on average and less than 60 years when heavily depleted. Notably, alternative fisheries restrictions are largely (64%) successful at maintaining biomass above 50% of B0, sustaining key functions such as herbivory. Our results demonstrate that crucial ecosystem functions can be maintained through a range of fisheries restrictions, allowing coral reef managers to develop recovery plans that meet conservation and livelihood objectives in areas where marine reserves are not socially or politically feasible solutions.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉MacNeil, M Aaron -- Graham, Nicholas A J -- Cinner, Joshua E -- Wilson, Shaun K -- Williams, Ivor D -- Maina, Joseph -- Newman, Steven -- Friedlander, Alan M -- Jupiter, Stacy -- Polunin, Nicholas V C -- McClanahan, Tim R -- England -- Nature. 2015 Apr 16;520(7547):341-4. doi: 10.1038/nature14358. Epub 2015 Apr 8.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉1] Australian Institute of Marine Science, PMB 3 Townsville MC, Townsville, Queensland 4810, Australia [2] Department of Mathematics and Statistics, Dalhousie University, Halifax, Nova Scotia B3H 3J5, Canada [3] Australian Research Council Centre of Excellence for Coral Reef Studies, James Cook University, Townsville, Queensland 4811, Australia. ; Australian Research Council Centre of Excellence for Coral Reef Studies, James Cook University, Townsville, Queensland 4811, Australia. ; 1] Department of Parks and Wildlife, Kensington, Perth, Western Australia 6151, Australia [2] Oceans Institute, University of Western Australia, Crawley, Western Australia 6009, Australia. ; Coral Reef Ecosystems Division, NOAA Pacific Islands Fisheries Science Center, Honolulu, Hawaii 96818, USA. ; 1] Australian Research Council Centre of Excellence for Environmental Decisions (CEED), University of Queensland, Brisbane, St Lucia, Queensland 4074, Australia [2] Wildlife Conservation Society, Marine Programs, Bronx, New York 10460, USA. ; School of Marine Science and Technology, Newcastle University, Newcastle upon Tyne NE1 7RU, UK. ; 1] Fisheries Ecology Research Lab, Department of Biology, University of Hawaii, Honolulu, Hawaii 96822, USA [2] Pristine Seas-National Geographic, Washington DC 20036, USA. ; Wildlife Conservation Society, Marine Programs, Bronx, New York 10460, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/25855298" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Biodiversity ; Biomass ; Conservation of Natural Resources/*methods/statistics & numerical data/*trends ; *Coral Reefs ; *Ecosystem ; Fisheries/*methods/standards/*statistics & numerical data ; Fishes/*physiology ; Herbivory ; Population Dynamics ; Predatory Behavior ; Time Factors
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  • 38
    Publication Date: 2015-11-26
    Description: Soil biodiversity is increasingly recognized as providing benefits to human health because it can suppress disease-causing soil organisms and provide clean air, water and food. Poor land-management practices and environmental change are, however, affecting belowground communities globally, and the resulting declines in soil biodiversity reduce and impair these benefits. Importantly, current research indicates that soil biodiversity can be maintained and partially restored if managed sustainably. Promoting the ecological complexity and robustness of soil biodiversity through improved management practices represents an underutilized resource with the ability to improve human health.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Wall, Diana H -- Nielsen, Uffe N -- Six, Johan -- England -- Nature. 2015 Dec 3;528(7580):69-76. doi: 10.1038/nature15744. Epub 2015 Nov 23.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉School of Global Environmental Sustainability and Department of Biology, Colorado State University, Fort Collins, Colorado 80523-1036, USA. ; Hawkesbury Institute for the Environment, Locked Bag 1797, Western Sydney University, Penrith, New South Wales 2751, Australia. ; Department of Environmental Systems Science, Swiss Federal Institute of Technology ETH-Zurich, Zurich 8092, Switzerland.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26595276" target="_blank"〉PubMed〈/a〉
    Keywords: Agriculture ; Animals ; Anthelmintics/pharmacology ; Anthrax/microbiology/veterinary ; Anti-Bacterial Agents ; Atmosphere/chemistry ; Bacillus anthracis/isolation & purification ; *Biodiversity ; Biomass ; Conservation of Natural Resources ; Drinking Water ; Drug Resistance ; Food Chain ; *Health ; Helminths/isolation & purification ; Humans ; Hypersensitivity/etiology/immunology ; Plant Diseases/microbiology/parasitology ; Soil/*parasitology ; *Soil Microbiology
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  • 39
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    Nature Publishing Group (NPG)
    Publication Date: 2011-06-24
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Sanderson, Katharine -- England -- Nature. 2011 Jun 22;474(7352):S12-4. doi: 10.1038/474S012a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/21697834" target="_blank"〉PubMed〈/a〉
    Keywords: Biofuels/*supply & distribution ; Biomass ; Biotechnology/methods ; Cellulases/genetics/metabolism ; Ethanol/chemistry/metabolism ; Lignin/*chemistry/*metabolism ; Wood/chemistry
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  • 40
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    Nature Publishing Group (NPG)
    Publication Date: 2011-04-09
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Hector, Andy -- England -- Nature. 2011 Apr 7;472(7341):45-6. doi: 10.1038/472045a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/21475190" target="_blank"〉PubMed〈/a〉
    Keywords: *Biodiversity ; Biofilms/growth & development ; Biomass ; Chlorophyta/growth & development/*physiology ; Diatoms/growth & development/*physiology ; Models, Biological ; Nitrogen/analysis/metabolism ; Population Density ; Rivers/*chemistry/*microbiology
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  • 41
    Publication Date: 2012-07-06
    Description: It is possible that anthropogenic climate change will drive the Earth system into a qualitatively different state. Although different types of uncertainty limit our capacity to assess this risk, Earth system scientists are particularly concerned about tipping elements, large-scale components of the Earth system that can be switched into qualitatively different states by small perturbations. Despite growing evidence that tipping elements exist in the climate system, whether large-scale vegetation systems can tip into alternative states is poorly understood. Here we show that tropical grassland, savanna and forest ecosystems, areas large enough to have powerful impacts on the Earth system, are likely to shift to alternative states. Specifically, we show that increasing atmospheric CO2 concentration will force transitions to vegetation states characterized by higher biomass and/or woody-plant dominance. The timing of these critical transitions varies as a result of between-site variance in the rate of temperature increase, as well as a dependence on stochastic variation in fire severity and rainfall. We further show that the locations of bistable vegetation zones (zones where alternative vegetation states can exist) will shift as climate changes. We conclude that even though large-scale directional regime shifts in terrestrial ecosystems are likely, asynchrony in the timing of these shifts may serve to dampen, but not nullify, the shock that these changes may represent to the Earth system.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Higgins, Steven I -- Scheiter, Simon -- England -- Nature. 2012 Aug 9;488(7410):209-12. doi: 10.1038/nature11238.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Institut fur Physische Geographie, Goethe Universitat Frankfurt am Main, 60438 Frankfurt am Main, Germany. higgins@em.uni-frankfurt.de〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/22763447" target="_blank"〉PubMed〈/a〉
    Keywords: Africa ; Atmosphere/*chemistry ; Biomass ; Carbon/metabolism ; Carbon Dioxide/analysis/*metabolism ; Climate Change/*statistics & numerical data ; *Ecosystem ; Fires ; Geography ; History, 19th Century ; History, 20th Century ; History, 21st Century ; Hot Temperature ; Models, Biological ; Photosynthesis/physiology ; Poaceae/growth & development/metabolism ; Probability ; Rain ; Stochastic Processes ; Time Factors ; Trees/*growth & development/metabolism ; Wood
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  • 42
    Publication Date: 2012-08-17
    Description: Modern life is intimately linked to the availability of fossil fuels, which continue to meet the world's growing energy needs even though their use drives climate change, exhausts finite reserves and contributes to global political strife. Biofuels made from renewable resources could be a more sustainable alternative, particularly if sourced from organisms, such as algae, that can be farmed without using valuable arable land. Strain development and process engineering are needed to make algal biofuels practical and economically viable.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Georgianna, D Ryan -- Mayfield, Stephen P -- England -- Nature. 2012 Aug 16;488(7411):329-35. doi: 10.1038/nature11479.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉San Diego Center for Algae Biotechnology, Division of Biological Sciences, University of California San Diego, 9500 Gilman Drive, La Jolla, California 92093, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/22895338" target="_blank"〉PubMed〈/a〉
    Keywords: Aquaculture/methods ; Biofuels/*supply & distribution ; Biomass ; Bioreactors ; Biosynthetic Pathways/genetics ; Biotechnology/*methods ; Genetic Engineering/*methods ; Kelp/isolation & purification/metabolism/microbiology ; Lipids/analysis/biosynthesis/chemistry ; Microalgae/*genetics/growth & development/isolation & ; purification/*metabolism/microbiology ; Phenotype ; Photosynthesis/physiology/radiation effects ; Recycling
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  • 43
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    Nature Publishing Group (NPG)
    Publication Date: 2012-08-31
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Tollefson, Jeff -- England -- Nature. 2012 Aug 30;488(7413):570. doi: 10.1038/488570a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/22932357" target="_blank"〉PubMed〈/a〉
    Keywords: Atmosphere/*chemistry ; Biomass ; Brazil ; Carbon Cycle ; Carbon Dioxide/*analysis/metabolism ; *Environmental Monitoring/instrumentation ; Forestry/*statistics & numerical data ; Global Warming ; Satellite Communications ; Trees/growth & development/*metabolism
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  • 44
    Publication Date: 2012-06-23
    Description: Trophic interactions govern biomass fluxes in ecosystems, and stability in food webs. Knowledge of how trophic interaction strengths are affected by differences among habitats is crucial for understanding variation in ecological systems. Here we show how substantial variation in consumption-rate data, and hence trophic interaction strengths, arises because consumers tend to encounter resources more frequently in three dimensions (3D) (for example, arboreal and pelagic zones) than two dimensions (2D) (for example, terrestrial and benthic zones). By combining new theory with extensive data (376 species, with body masses ranging from 5.24 x 10(-14) kg to 800 kg), we find that consumption rates scale sublinearly with consumer body mass (exponent of approximately 0.85) for 2D interactions, but superlinearly (exponent of approximately 1.06) for 3D interactions. These results contradict the currently widespread assumption of a single exponent (of approximately 0.75) in consumer-resource and food-web research. Further analysis of 2,929 consumer-resource interactions shows that dimensionality of consumer search space is probably a major driver of species coexistence, and the stability and abundance of populations.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Pawar, Samraat -- Dell, Anthony I -- Savage, Van M -- England -- Nature. 2012 Jun 28;486(7404):485-9. doi: 10.1038/nature11131.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Biomathematics, David Geffen School of Medicine, University of California, Los Angeles, California 90095-1766, USA. samraat@ucla.edu〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/22722834" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Biomass ; Birds/physiology ; Body Size ; Body Weight ; Eating/physiology ; *Ecosystem ; Energy Metabolism ; Feeding Behavior/*physiology ; Fishes/physiology ; Flight, Animal ; *Food Chain ; Locomotion/physiology ; *Models, Biological ; Population Dynamics ; Predatory Behavior/physiology ; Reproduction/physiology ; Ruminants/physiology
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  • 45
    Publication Date: 2012-08-17
    Description: Advanced biofuels produced by microorganisms have similar properties to petroleum-based fuels, and can 'drop in' to the existing transportation infrastructure. However, producing these biofuels in yields high enough to be useful requires the engineering of the microorganism's metabolism. Such engineering is not based on just one specific feedstock or host organism. Data-driven and synthetic-biology approaches can be used to optimize both the host and pathways to maximize fuel production. Despite some success, challenges still need to be met to move advanced biofuels towards commercialization, and to compete with more conventional fuels.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Peralta-Yahya, Pamela P -- Zhang, Fuzhong -- del Cardayre, Stephen B -- Keasling, Jay D -- England -- Nature. 2012 Aug 16;488(7411):320-8. doi: 10.1038/nature11478.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Joint BioEnergy Institute, 5885 Hollis Street, Emeryville, California 94608, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/22895337" target="_blank"〉PubMed〈/a〉
    Keywords: Alcohols/chemistry/metabolism ; Biofuels/economics/*supply & distribution ; Biomass ; Fatty Acids/chemistry/metabolism ; *Genetic Engineering ; *Microbiology ; Petroleum/metabolism/utilization ; Polyketide Synthases/genetics/metabolism ; Synthetic Biology ; Terpenes/chemistry/metabolism ; Transportation
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  • 46
    Publication Date: 2012-10-19
    Description: Salt marshes are highly productive coastal wetlands that provide important ecosystem services such as storm protection for coastal cities, nutrient removal and carbon sequestration. Despite protective measures, however, worldwide losses of these ecosystems have accelerated in recent decades. Here we present data from a nine-year whole-ecosystem nutrient-enrichment experiment. Our study demonstrates that nutrient enrichment, a global problem for coastal ecosystems, can be a driver of salt marsh loss. We show that nutrient levels commonly associated with coastal eutrophication increased above-ground leaf biomass, decreased the dense, below-ground biomass of bank-stabilizing roots, and increased microbial decomposition of organic matter. Alterations in these key ecosystem properties reduced geomorphic stability, resulting in creek-bank collapse with significant areas of creek-bank marsh converted to unvegetated mud. This pattern of marsh loss parallels observations for anthropogenically nutrient-enriched marshes worldwide, with creek-edge and bay-edge marsh evolving into mudflats and wider creeks. Our work suggests that current nutrient loading rates to many coastal ecosystems have overwhelmed the capacity of marshes to remove nitrogen without deleterious effects. Projected increases in nitrogen flux to the coast, related to increased fertilizer use required to feed an expanding human population, may rapidly result in a coastal landscape with less marsh, which would reduce the capacity of coastal regions to provide important ecological and economic services.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Deegan, Linda A -- Johnson, David Samuel -- Warren, R Scott -- Peterson, Bruce J -- Fleeger, John W -- Fagherazzi, Sergio -- Wollheim, Wilfred M -- England -- Nature. 2012 Oct 18;490(7420):388-92. doi: 10.1038/nature11533.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉The Ecosystems Center, Marine Biological Laboratory, 7 MBL Street, Woods Hole, Massachusetts 02543, USA. ldeegan@mbl.edu〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/23075989" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Biomass ; Carbon Sequestration ; Eutrophication/*physiology ; Fertilizers ; *Food ; Food Supply ; Nitrogen/metabolism ; Nitrogen Cycle ; *Salts ; *Wetlands
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  • 47
    Publication Date: 2012-08-24
    Description: After methane, ethane is the most abundant hydrocarbon in the remote atmosphere. It is a precursor to tropospheric ozone and it influences the atmosphere's oxidative capacity through its reaction with the hydroxyl radical, ethane's primary atmospheric sink. Here we present the longest continuous record of global atmospheric ethane levels. We show that global ethane emission rates decreased from 14.3 to 11.3 teragrams per year, or by 21 per cent, from 1984 to 2010. We attribute this to decreasing fugitive emissions from ethane's fossil fuel source--most probably decreased venting and flaring of natural gas in oil fields--rather than a decline in its other major sources, biofuel use and biomass burning. Ethane's major emission sources are shared with methane, and recent studies have disagreed on whether reduced fossil fuel or microbial emissions have caused methane's atmospheric growth rate to slow. Our findings suggest that reduced fugitive fossil fuel emissions account for at least 10-21 teragrams per year (30-70 per cent) of the decrease in methane's global emissions, significantly contributing to methane's slowing atmospheric growth rate since the mid-1980s.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Simpson, Isobel J -- Sulbaek Andersen, Mads P -- Meinardi, Simone -- Bruhwiler, Lori -- Blake, Nicola J -- Helmig, Detlev -- Rowland, F Sherwood -- Blake, Donald R -- England -- Nature. 2012 Aug 23;488(7412):490-4. doi: 10.1038/nature11342.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Chemistry, University of California-Irvine, Irvine, California 92697, USA. isimpson@uci.edu〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/22914166" target="_blank"〉PubMed〈/a〉
    Keywords: Atmosphere/*chemistry ; Biofuels/utilization ; Biomass ; Ethane/*analysis/*chemistry/history ; Greenhouse Effect ; History, 20th Century ; History, 21st Century ; Methane/*analysis/*chemistry/history ; Natural Gas/utilization ; Oil and Gas Fields ; Ozone/chemistry ; Wetlands
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  • 48
    Publication Date: 2013-05-17
    Description: High latitudes contain nearly half of global soil carbon, prompting interest in understanding how the Arctic terrestrial carbon balance will respond to rising temperatures. Low temperatures suppress the activity of soil biota, retarding decomposition and nitrogen release, which limits plant and microbial growth. Warming initially accelerates decomposition, increasing nitrogen availability, productivity and woody-plant dominance. However, these responses may be transitory, because coupled abiotic-biotic feedback loops that alter soil-temperature dynamics and change the structure and activity of soil communities, can develop. Here we report the results of a two-decade summer warming experiment in an Alaskan tundra ecosystem. Warming increased plant biomass and woody dominance, indirectly increased winter soil temperature, homogenized the soil trophic structure across horizons and suppressed surface-soil-decomposer activity, but did not change total soil carbon or nitrogen stocks, thereby increasing net ecosystem carbon storage. Notably, the strongest effects were in the mineral horizon, where warming increased decomposer activity and carbon stock: a 'biotic awakening' at depth.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Sistla, Seeta A -- Moore, John C -- Simpson, Rodney T -- Gough, Laura -- Shaver, Gaius R -- Schimel, Joshua P -- England -- Nature. 2013 May 30;497(7451):615-8. doi: 10.1038/nature12129. Epub 2013 May 15.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Ecology, Evolution and Marine Biology, University of California Santa Barbara, Santa Barbara, California 93108, USA. sistla@lifesci.ucsb.edu〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/23676669" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Arctic Regions ; Biomass ; Carbon/*analysis ; *Carbon Cycle ; *Cold Climate ; Discriminant Analysis ; *Ecosystem ; Food Chain ; Global Warming/*statistics & numerical data ; History, 20th Century ; History, 21st Century ; Nitrogen/metabolism ; Photosynthesis ; Plants/metabolism ; Rain ; Soil/analysis/*chemistry/parasitology ; Soil Microbiology ; *Temperature ; Time Factors ; Uncertainty
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  • 49
    Publication Date: 2013-07-09
    Description: Intensified exploitation of natural populations and habitats has led to increased mortality rates and decreased abundances of many species. There is a growing concern that this might cause critical abundance thresholds of species to be crossed, with extinction cascades and state shifts in ecosystems as a consequence. When increased mortality rate and decreased abundance of a given species lead to extinction of other species, this species can be characterized as functionally extinct even though it still exists. Although such functional extinctions have been observed in some ecosystems, their frequency is largely unknown. Here we use a new modelling approach to explore the frequency and pattern of functional extinctions in ecological networks. Specifically, we analytically derive critical abundance thresholds of species by increasing their mortality rates until an extinction occurs in the network. Applying this approach on natural and theoretical food webs, we show that the species most likely to go extinct first is not the one whose mortality rate is increased but instead another species. Indeed, up to 80% of all first extinctions are of another species, suggesting that a species' ecological functionality is often lost before its own existence is threatened. Furthermore, we find that large-bodied species at the top of the food chains can only be exposed to small increases in mortality rate and small decreases in abundance before going functionally extinct compared to small-bodied species lower in the food chains. These results illustrate the potential importance of functional extinctions in ecological networks and lend strong support to arguments advocating a more community-oriented approach in conservation biology, with target levels for populations based on ecological functionality rather than on mere persistence.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Saterberg, Torbjorn -- Sellman, Stefan -- Ebenman, Bo -- England -- Nature. 2013 Jul 25;499(7459):468-70. doi: 10.1038/nature12277. Epub 2013 Jul 7.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Physics, Chemistry and Biology, Division of Theoretical Biology, Linkoping University, SE-58183 Linkoping, Sweden.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/23831648" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Biomass ; Body Size ; Body Weight ; Conservation of Natural Resources/methods ; Ecology/methods ; *Extinction, Biological ; *Food Chain ; *Models, Biological ; Population Density ; Predatory Behavior/*physiology ; Survival Analysis ; Survival Rate
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  • 50
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    Nature Publishing Group (NPG)
    Publication Date: 2013-10-18
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉England -- Nature. 2013 Oct 17;502(7471):S60-1. doi: 10.1038/502S60a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/24132337" target="_blank"〉PubMed〈/a〉
    Keywords: Biofuels/adverse effects/economics ; Biomass ; Climate Change/statistics & numerical data ; Photosynthesis ; *Renewable Energy/economics ; Solar Energy/economics ; Technology/economics/*trends
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  • 51
    Publication Date: 2014-11-21
    Description: Ground- and aircraft-based measurements show that the seasonal amplitude of Northern Hemisphere atmospheric carbon dioxide (CO2) concentrations has increased by as much as 50 per cent over the past 50 years. This increase has been linked to changes in temperate, boreal and arctic ecosystem properties and processes such as enhanced photosynthesis, increased heterotrophic respiration, and expansion of woody vegetation. However, the precise causal mechanisms behind the observed changes in atmospheric CO2 seasonality remain unclear. Here we use production statistics and a carbon accounting model to show that increases in agricultural productivity, which have been largely overlooked in previous investigations, explain as much as a quarter of the observed changes in atmospheric CO2 seasonality. Specifically, Northern Hemisphere extratropical maize, wheat, rice, and soybean production grew by 240 per cent between 1961 and 2008, thereby increasing the amount of net carbon uptake by croplands during the Northern Hemisphere growing season by 0.33 petagrams. Maize alone accounts for two-thirds of this change, owing mostly to agricultural intensification within concentrated production zones in the midwestern United States and northern China. Maize, wheat, rice, and soybeans account for about 68 per cent of extratropical dry biomass production, so it is likely that the total impact of increased agricultural production exceeds the amount quantified here.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Gray, Josh M -- Frolking, Steve -- Kort, Eric A -- Ray, Deepak K -- Kucharik, Christopher J -- Ramankutty, Navin -- Friedl, Mark A -- England -- Nature. 2014 Nov 20;515(7527):398-401. doi: 10.1038/nature13957.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Earth and Environment, Boston University, Boston, Massachussetts 02215, USA. ; Earth Systems Research Center, University of New Hampshire, Durham, New Hampshire 03824, USA. ; Department of Atmospheric, Oceanic and Space Sciences, University of Michigan, Ann Arbor, Michigan 48109, USA. ; Institute on the Environment, University of Minnesota, Saint Paul, Minnesota 55108, USA. ; Department of Agronomy and Nelson Institute Center for Sustainability and the Global Environment, University of Wisconsin-Madison, Madison, Wisconsin 53706, USA. ; Department of Geography, McGill University, Montreal, Quebec H3A 0B9, Canada.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/25409830" target="_blank"〉PubMed〈/a〉
    Keywords: Agriculture/*statistics & numerical data ; Atmosphere/*chemistry ; Biomass ; Carbon Dioxide/*analysis/metabolism ; Crops, Agricultural/growth & development/*metabolism ; Ecosystem ; *Efficiency ; Human Activities ; *Seasons
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  • 52
    Publication Date: 2014-11-05
    Description: Lignin is a heterogeneous aromatic biopolymer that accounts for nearly 30% of the organic carbon on Earth and is one of the few renewable sources of aromatic chemicals. As the most recalcitrant of the three components of lignocellulosic biomass (cellulose, hemicellulose and lignin), lignin has been treated as a waste product in the pulp and paper industry, where it is burned to supply energy and recover pulping chemicals in the operation of paper mills. Extraction of higher value from lignin is increasingly recognized as being crucial to the economic viability of integrated biorefineries. Depolymerization is an important starting point for many lignin valorization strategies, because it could generate valuable aromatic chemicals and/or provide a source of low-molecular-mass feedstocks suitable for downstream processing. Commercial precedents show that certain types of lignin (lignosulphonates) may be converted into vanillin and other marketable products, but new technologies are needed to enhance the lignin value chain. The complex, irregular structure of lignin complicates chemical conversion efforts, and known depolymerization methods typically afford ill-defined products in low yields (that is, less than 10-20wt%). Here we describe a method for the depolymerization of oxidized lignin under mild conditions in aqueous formic acid that results in more than 60wt% yield of low-molecular-mass aromatics. We present the discovery of this facile C-O cleavage method, its application to aspen lignin depolymerization, and mechanistic insights into the reaction. The broader implications of these results for lignin conversion and biomass refining are also considered.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Rahimi, Alireza -- Ulbrich, Arne -- Coon, Joshua J -- Stahl, Shannon S -- England -- Nature. 2014 Nov 13;515(7526):249-52. doi: 10.1038/nature13867. Epub 2014 Nov 2.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Chemistry, University of Wisconsin-Madison, 1101 University Avenue, Madison, Wisconsin 53706, USA. ; 1] Department of Chemistry, University of Wisconsin-Madison, 1101 University Avenue, Madison, Wisconsin 53706, USA [2] Department of Biomolecular Chemistry, University of Wisconsin-Madison, Madison, Wisconsin 53706, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/25363781" target="_blank"〉PubMed〈/a〉
    Keywords: Biomass ; Formates/*chemistry ; Lignin/*chemistry ; Molecular Structure ; *Polymerization
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  • 53
    Publication Date: 2014-01-17
    Description: Forests are major components of the global carbon cycle, providing substantial feedback to atmospheric greenhouse gas concentrations. Our ability to understand and predict changes in the forest carbon cycle--particularly net primary productivity and carbon storage--increasingly relies on models that represent biological processes across several scales of biological organization, from tree leaves to forest stands. Yet, despite advances in our understanding of productivity at the scales of leaves and stands, no consensus exists about the nature of productivity at the scale of the individual tree, in part because we lack a broad empirical assessment of whether rates of absolute tree mass growth (and thus carbon accumulation) decrease, remain constant, or increase as trees increase in size and age. Here we present a global analysis of 403 tropical and temperate tree species, showing that for most species mass growth rate increases continuously with tree size. Thus, large, old trees do not act simply as senescent carbon reservoirs but actively fix large amounts of carbon compared to smaller trees; at the extreme, a single big tree can add the same amount of carbon to the forest within a year as is contained in an entire mid-sized tree. The apparent paradoxes of individual tree growth increasing with tree size despite declining leaf-level and stand-level productivity can be explained, respectively, by increases in a tree's total leaf area that outpace declines in productivity per unit of leaf area and, among other factors, age-related reductions in population density. Our results resolve conflicting assumptions about the nature of tree growth, inform efforts to undertand and model forest carbon dynamics, and have additional implications for theories of resource allocation and plant senescence.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Stephenson, N L -- Das, A J -- Condit, R -- Russo, S E -- Baker, P J -- Beckman, N G -- Coomes, D A -- Lines, E R -- Morris, W K -- Ruger, N -- Alvarez, E -- Blundo, C -- Bunyavejchewin, S -- Chuyong, G -- Davies, S J -- Duque, A -- Ewango, C N -- Flores, O -- Franklin, J F -- Grau, H R -- Hao, Z -- Harmon, M E -- Hubbell, S P -- Kenfack, D -- Lin, Y -- Makana, J-R -- Malizia, A -- Malizia, L R -- Pabst, R J -- Pongpattananurak, N -- Su, S-H -- Sun, I-F -- Tan, S -- Thomas, D -- van Mantgem, P J -- Wang, X -- Wiser, S K -- Zavala, M A -- England -- Nature. 2014 Mar 6;507(7490):90-3. doi: 10.1038/nature12914. Epub 2014 Jan 15.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉US Geological Survey, Western Ecological Research Center, Three Rivers, California 93271, USA. ; Smithsonian Tropical Research Institute, Apartado 0843-03092, Balboa, Republic of Panama. ; School of Biological Sciences, University of Nebraska, Lincoln, Nebraska 68588, USA. ; Department of Forest and Ecosystem Science, University of Melbourne, Victoria 3121, Australia. ; 1] School of Biological Sciences, University of Nebraska, Lincoln, Nebraska 68588, USA [2] Mathematical Biosciences Institute, Ohio State University, Columbus, Ohio 43210, USA (N.G.B.); German Centre for Integrative Biodiversity Research (iDiv), Halle-Jena-Leipzig, 04103 Leipzig, Germany (N.R.). ; Department of Plant Sciences, University of Cambridge, Cambridge CB2 3EA, UK. ; Department of Geography, University College London, London WC1E 6BT, UK. ; School of Botany, University of Melbourne, Victoria 3010, Australia. ; 1] Smithsonian Tropical Research Institute, Apartado 0843-03092, Balboa, Republic of Panama [2] Spezielle Botanik und Funktionelle Biodiversitat, Universitat Leipzig, 04103 Leipzig, Germany [3] Mathematical Biosciences Institute, Ohio State University, Columbus, Ohio 43210, USA (N.G.B.); German Centre for Integrative Biodiversity Research (iDiv), Halle-Jena-Leipzig, 04103 Leipzig, Germany (N.R.). ; Jardin Botanico de Medellin, Calle 73, No. 51D-14, Medellin, Colombia. ; Instituto de Ecologia Regional, Universidad Nacional de Tucuman, 4107 Yerba Buena, Tucuman, Argentina. ; Research Office, Department of National Parks, Wildlife and Plant Conservation, Bangkok 10900, Thailand. ; Department of Botany and Plant Physiology, Buea, Southwest Province, Cameroon. ; Smithsonian Institution Global Earth Observatory-Center for Tropical Forest Science, Smithsonian Institution, PO Box 37012, Washington, DC 20013, USA. ; Universidad Nacional de Colombia, Departamento de Ciencias Forestales, Medellin, Colombia. ; Wildlife Conservation Society, Kinshasa/Gombe, Democratic Republic of the Congo. ; Unite Mixte de Recherche-Peuplements Vegetaux et Bioagresseurs en Milieu Tropical, Universite de la Reunion/CIRAD, 97410 Saint Pierre, France. ; School of Environmental and Forest Sciences, University of Washington, Seattle, Washington 98195, USA. ; State Key Laboratory of Forest and Soil Ecology, Institute of Applied Ecology, Chinese Academy of Sciences, Shenyang 110164, China. ; Department of Forest Ecosystems and Society, Oregon State University, Corvallis, Oregon 97331, USA. ; 1] Smithsonian Tropical Research Institute, Apartado 0843-03092, Balboa, Republic of Panama [2] Department of Ecology and Evolutionary Biology, University of California, Los Angeles, California 90095, USA. ; Department of Life Science, Tunghai University, Taichung City 40704, Taiwan. ; Facultad de Ciencias Agrarias, Universidad Nacional de Jujuy, 4600 San Salvador de Jujuy, Argentina. ; Faculty of Forestry, Kasetsart University, ChatuChak Bangkok 10900, Thailand. ; Taiwan Forestry Research Institute, Taipei 10066, Taiwan. ; Department of Natural Resources and Environmental Studies, National Dong Hwa University, Hualien 97401, Taiwan. ; Sarawak Forestry Department, Kuching, Sarawak 93660, Malaysia. ; Department of Botany and Plant Pathology, Oregon State University, Corvallis, Oregon 97331, USA. ; US Geological Survey, Western Ecological Research Center, Arcata, California 95521, USA. ; Landcare Research, PO Box 40, Lincoln 7640, New Zealand. ; Forest Ecology and Restoration Group, Department of Life Sciences, University of Alcala, Alcala de Henares, 28805 Madrid, Spain.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/24429523" target="_blank"〉PubMed〈/a〉
    Keywords: Aging/metabolism ; Biomass ; *Body Size ; Carbon/*metabolism ; *Carbon Cycle ; Climate ; Geography ; Models, Biological ; Plant Leaves/growth & development/metabolism ; Sample Size ; Species Specificity ; Time Factors ; Trees/*anatomy & histology/classification/growth & development/*metabolism ; Tropical Climate
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  • 54
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    Nature Publishing Group (NPG)
    Publication Date: 2015-01-17
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Cernansky, Rachel -- England -- Nature. 2015 Jan 15;517(7534):258-60. doi: 10.1038/517258a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/25592517" target="_blank"〉PubMed〈/a〉
    Keywords: Agriculture/*methods ; Aluminum Silicates/chemistry ; Biofuels ; Biomass ; Charcoal/*chemistry/*metabolism ; Nitrous Oxide/metabolism ; Soil/*chemistry ; Soil Microbiology ; Surface Properties ; Water/analysis ; Water Movements ; Water Pollution/prevention & control ; Water Purification/methods
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  • 55
    Publication Date: 2014-04-25
    Description: Tropical forests are global epicentres of biodiversity and important modulators of climate change, and are mainly constrained by rainfall patterns. The severe short-term droughts that occurred recently in Amazonia have drawn attention to the vulnerability of tropical forests to climatic disturbances. The central African rainforests, the second-largest on Earth, have experienced a long-term drying trend whose impacts on vegetation dynamics remain mostly unknown because in situ observations are very limited. The Congolese forest, with its drier conditions and higher percentage of semi-evergreen trees, may be more tolerant to short-term rainfall reduction than are wetter tropical forests, but for a long-term drought there may be critical thresholds of water availability below which higher-biomass, closed-canopy forests transition to more open, lower-biomass forests. Here we present observational evidence for a widespread decline in forest greenness over the past decade based on analyses of satellite data (optical, thermal, microwave and gravity) from several independent sensors over the Congo basin. This decline in vegetation greenness, particularly in the northern Congolese forest, is generally consistent with decreases in rainfall, terrestrial water storage, water content in aboveground woody and leaf biomass, and the canopy backscatter anomaly caused by changes in structure and moisture in upper forest layers. It is also consistent with increases in photosynthetically active radiation and land surface temperature. These multiple lines of evidence indicate that this large-scale vegetation browning, or loss of photosynthetic capacity, may be partially attributable to the long-term drying trend. Our results suggest that a continued gradual decline of photosynthetic capacity and moisture content driven by the persistent drying trend could alter the composition and structure of the Congolese forest to favour the spread of drought-tolerant species.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Zhou, Liming -- Tian, Yuhong -- Myneni, Ranga B -- Ciais, Philippe -- Saatchi, Sassan -- Liu, Yi Y -- Piao, Shilong -- Chen, Haishan -- Vermote, Eric F -- Song, Conghe -- Hwang, Taehee -- England -- Nature. 2014 May 1;509(7498):86-90. doi: 10.1038/nature13265. Epub 2014 Apr 23.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Atmospheric and Environmental Sciences, University at Albany, State University of New York (SUNY), Albany, New York 12222, USA. ; I. M. Systems Group (IMSG), National Oceanic and Atmospheric Administration/National Environmental Satellite, Data, and Information Service/The Center for Satellite Applications and Research (NOAA/NESDIS/STAR), 5830 University Research Court, College Park, Maryland 20740, USA. ; Department of Earth and Environment, Boston University, Boston, Massachusetts 02215, USA. ; Laboratoire des Sciences du Climat et de l'Environnement (LSCE), CEA-CNRS-UVSQ, 91191 Gif sur Yvette Cedex, France. ; Jet Propulsion Laboratory, Pasadena, California 91109, USA. ; ARC Centre of Excellence for Climate Systems Science & Climate Change Research Centre, University of New South Wales, Sydney, New South Wales 2052, Australia. ; Department of Ecology, College of Urban and Environmental Sciences, Peking University, Beijing 100871, China. ; Key Laboratory of Meteorological Disaster, Ministry of Education, Nanjing University of Information Science and Technology, Nanjing 210044, China. ; NASA Goddard Space Flight Center, Code 619, Greenbelt, Maryland 20771, USA. ; 1] Department of Geography, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina 29599, USA [2] School of Forestry and Landscape Architecture, Anhui Agricultural University, Hefei, Anhui 230036, China. ; Institute for the Environment, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina 29599, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/24759324" target="_blank"〉PubMed〈/a〉
    Keywords: Acclimatization ; Biodiversity ; Biomass ; Chlorophyll/analysis/metabolism ; Climate Change/*statistics & numerical data ; Congo ; Droughts/statistics & numerical data ; Photosynthesis ; Plant Leaves/*growth & development/metabolism ; *Rain ; Satellite Imagery ; Seasons ; Temperature ; Time Factors ; Trees/*growth & development/metabolism ; *Tropical Climate ; Water/analysis/metabolism ; Wood/growth & development/metabolism
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  • 56
    Publication Date: 2015-09-19
    Description: Assessment of the global burden of disease is based on epidemiological cohort studies that connect premature mortality to a wide range of causes, including the long-term health impacts of ozone and fine particulate matter with a diameter smaller than 2.5 micrometres (PM2.5). It has proved difficult to quantify premature mortality related to air pollution, notably in regions where air quality is not monitored, and also because the toxicity of particles from various sources may vary. Here we use a global atmospheric chemistry model to investigate the link between premature mortality and seven emission source categories in urban and rural environments. In accord with the global burden of disease for 2010 (ref. 5), we calculate that outdoor air pollution, mostly by PM2.5, leads to 3.3 (95 per cent confidence interval 1.61-4.81) million premature deaths per year worldwide, predominantly in Asia. We primarily assume that all particles are equally toxic, but also include a sensitivity study that accounts for differential toxicity. We find that emissions from residential energy use such as heating and cooking, prevalent in India and China, have the largest impact on premature mortality globally, being even more dominant if carbonaceous particles are assumed to be most toxic. Whereas in much of the USA and in a few other countries emissions from traffic and power generation are important, in eastern USA, Europe, Russia and East Asia agricultural emissions make the largest relative contribution to PM2.5, with the estimate of overall health impact depending on assumptions regarding particle toxicity. Model projections based on a business-as-usual emission scenario indicate that the contribution of outdoor air pollution to premature mortality could double by 2050.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Lelieveld, J -- Evans, J S -- Fnais, M -- Giannadaki, D -- Pozzer, A -- England -- Nature. 2015 Sep 17;525(7569):367-71. doi: 10.1038/nature15371.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Max Planck Institute for Chemistry, Atmospheric Chemistry Department, 55128 Mainz, Germany. ; The Cyprus Institute, Energy, Environment and Water Research Center, 1645 Nicosia, Cyprus. ; Harvard School of Public Health, Boston, Massachusetts 02215, USA. ; Cyprus International Institute for Environment and Public Health, Cyprus University of Technology, 3041 Limassol, Cyprus. ; King Saud University, College of Science, Riyadh 11451, Saudi Arabia.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26381985" target="_blank"〉PubMed〈/a〉
    Keywords: Adult ; Agriculture/statistics & numerical data ; Air Pollutants/*adverse effects/poisoning ; Air Pollution/*adverse effects ; Atmosphere/chemistry ; Biomass ; Child, Preschool ; China/epidemiology ; Cooking/statistics & numerical data ; Environmental Exposure/*adverse effects ; Environmental Monitoring ; Europe/epidemiology ; Far East/epidemiology ; Fires/statistics & numerical data ; Heating/statistics & numerical data ; Humans ; India/epidemiology ; Infant ; *Internationality ; Middle Aged ; *Mortality, Premature/trends ; Ozone/adverse effects/analysis/poisoning ; Particulate Matter/*adverse effects/poisoning ; Power Plants/statistics & numerical data ; Rural Health/statistics & numerical data ; Russia/epidemiology ; United States/epidemiology ; Urban Health/statistics & numerical data ; Vehicle Emissions/poisoning
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  • 57
    Publication Date: 2015-12-04
    Description: The negative effect of increasing atmospheric nitrogen (N) pollution on grassland biodiversity is now incontrovertible. However, the recent introduction of cleaner technologies in the UK has led to reductions in the emissions of nitrogen oxides, with concomitant decreases in N deposition. The degree to which grassland biodiversity can be expected to 'bounce back' in response to these improvements in air quality is uncertain, with a suggestion that long-term chronic N addition may lead to an alternative low biodiversity state. Here we present evidence from the 160-year-old Park Grass Experiment at Rothamsted Research, UK, that shows a positive response of biodiversity to reducing N addition from either atmospheric pollution or fertilizers. The proportion of legumes, species richness and diversity increased across the experiment between 1991 and 2012 as both wet and dry N deposition declined. Plots that stopped receiving inorganic N fertilizer in 1989 recovered much of the diversity that had been lost, especially if limed. There was no evidence that chronic N addition has resulted in an alternative low biodiversity state on the Park Grass plots, except where there has been extreme acidification, although it is likely that the recovery of plant communities has been facilitated by the twice-yearly mowing and removal of biomass. This may also explain why a comparable response of plant communities to reduced N inputs has yet to be observed in the wider landscape.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Storkey, J -- Macdonald, A J -- Poulton, P R -- Scott, T -- Kohler, I H -- Schnyder, H -- Goulding, K W T -- Crawley, M J -- Biotechnology and Biological Sciences Research Council/United Kingdom -- England -- Nature. 2015 Dec 17;528(7582):401-4. doi: 10.1038/nature16444. Epub 2015 Dec 2.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Rothamsted Research, Harpenden, Hertfordshire AL5 2JQ, UK. ; Lehrstuhl fur Grunlandlehre, Technische Universitat Munchen, Alte Akademie 12, 85354 Freising-Weihenstephan, Germany. ; Department of Biological Sciences, Imperial College London, Silwood Park, Ascot, Berkshire SL5 7PY, UK.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26633635" target="_blank"〉PubMed〈/a〉
    Keywords: Air Pollution/*adverse effects/analysis ; Atmosphere/chemistry ; *Biodiversity ; Biomass ; *Environmental Restoration and Remediation ; Fabaceae/drug effects/metabolism ; Fertilizers/adverse effects/analysis ; *Grassland ; Great Britain ; Hydrogen-Ion Concentration ; Nitrogen/*adverse effects/analysis ; Parks, Recreational ; Poaceae/*classification/*drug effects/metabolism
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  • 58
    Publication Date: 2010-04-09
    Description: Atmospheric concentrations of the greenhouse gas nitrous oxide (N(2)O) have increased significantly since pre-industrial times owing to anthropogenic perturbation of the global nitrogen cycle, with animal production being one of the main contributors. Grasslands cover about 20 per cent of the temperate land surface of the Earth and are widely used as pasture. It has been suggested that high animal stocking rates and the resulting elevated nitrogen input increase N(2)O emissions. Internationally agreed methods to upscale the effect of increased livestock numbers on N(2)O emissions are based directly on per capita nitrogen inputs. However, measurements of grassland N(2)O fluxes are often performed over short time periods, with low time resolution and mostly during the growing season. In consequence, our understanding of the daily and seasonal dynamics of grassland N(2)O fluxes remains limited. Here we report year-round N(2)O flux measurements with high and low temporal resolution at ten steppe grassland sites in Inner Mongolia, China. We show that short-lived pulses of N(2)O emission during spring thaw dominate the annual N(2)O budget at our study sites. The N(2)O emission pulses are highest in ungrazed steppe and decrease with increasing stocking rate, suggesting that grazing decreases rather than increases N(2)O emissions. Our results show that the stimulatory effect of higher stocking rates on nitrogen cycling and, hence, on N(2)O emission is more than offset by the effects of a parallel reduction in microbial biomass, inorganic nitrogen production and wintertime water retention. By neglecting these freeze-thaw interactions, existing approaches may have systematically overestimated N(2)O emissions over the last century for semi-arid, cool temperate grasslands by up to 72 per cent.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Wolf, Benjamin -- Zheng, Xunhua -- Bruggemann, Nicolas -- Chen, Weiwei -- Dannenmann, Michael -- Han, Xingguo -- Sutton, Mark A -- Wu, Honghui -- Yao, Zhisheng -- Butterbach-Bahl, Klaus -- England -- Nature. 2010 Apr 8;464(7290):881-4. doi: 10.1038/nature08931.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Institute for Meteorology and Climate Research, Karlsruhe Institute of Technology, Kreuzeckbahnstrasse 19, 82467 Garmisch-Partenkirchen, Germany.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/20376147" target="_blank"〉PubMed〈/a〉
    Keywords: *Animal Husbandry/methods/statistics & numerical data ; Animals ; Animals, Domestic/*metabolism ; Atmosphere/chemistry ; Biomass ; China ; Desert Climate ; *Ecosystem ; Freezing ; Greenhouse Effect ; Nitrogen/metabolism ; Nitrous Oxide/*analysis/*metabolism ; Plants/metabolism ; Poaceae/metabolism ; Seasons ; Snow ; Soil/analysis ; *Soil Microbiology ; Water/analysis/metabolism
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  • 59
    Publication Date: 2011-08-13
    Description: Methane and ethane are the most abundant hydrocarbons in the atmosphere and they affect both atmospheric chemistry and climate. Both gases are emitted from fossil fuels and biomass burning, whereas methane (CH(4)) alone has large sources from wetlands, agriculture, landfills and waste water. Here we use measurements in firn (perennial snowpack) air from Greenland and Antarctica to reconstruct the atmospheric variability of ethane (C(2)H(6)) during the twentieth century. Ethane levels rose from early in the century until the 1980s, when the trend reversed, with a period of decline over the next 20 years. We find that this variability was primarily driven by changes in ethane emissions from fossil fuels; these emissions peaked in the 1960s and 1970s at 14-16 teragrams per year (1 Tg = 10(12) g) and dropped to 8-10 Tg yr(-1) by the turn of the century. The reduction in fossil-fuel sources is probably related to changes in light hydrocarbon emissions associated with petroleum production and use. The ethane-based fossil-fuel emission history is strikingly different from bottom-up estimates of methane emissions from fossil-fuel use, and implies that the fossil-fuel source of methane started to decline in the 1980s and probably caused the late twentieth century slow-down in the growth rate of atmospheric methane.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Aydin, Murat -- Verhulst, Kristal R -- Saltzman, Eric S -- Battle, Mark O -- Montzka, Stephen A -- Blake, Donald R -- Tang, Qi -- Prather, Michael J -- England -- Nature. 2011 Aug 10;476(7359):198-201. doi: 10.1038/nature10352.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Earth System Science, University of California, Irvine, California 92697, USA. maydin@uci.edu〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/21833087" target="_blank"〉PubMed〈/a〉
    Keywords: Antarctic Regions ; Atmosphere/*chemistry ; Biofuels ; Biomass ; Ethane/*analysis ; Fires ; *Fossil Fuels/history/utilization ; Geography ; Greenland ; History, 20th Century ; History, 21st Century ; Ice/analysis ; Methane/*analysis ; Models, Theoretical ; Snow/*chemistry
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  • 60
    Publication Date: 2011-04-09
    Description: Excessive nutrient loading of water bodies is a leading cause of water pollution worldwide, and controlling nutrient levels in watersheds is a primary objective of most environmental policy. Over the past two decades, much research has shown that ecosystems with more species are more efficient at removing nutrients from soil and water than are ecosystems with fewer species. This has led some to suggest that conservation of biodiversity might be a useful tool for managing nutrient uptake and storage, but this suggestion has been controversial, in part because the specific biological mechanisms by which species diversity influences nutrient uptake have not been identified. Here I use a model system of stream biofilms to show that niche partitioning among species of algae can increase the uptake and storage of nitrate, a nutrient pollutant of global concern. I manipulated the number of species of algae growing in the biofilms of 150 stream mesocosms that had been set up to mimic the variety of flow habitats and disturbance regimes that are typical of natural streams. Nitrogen uptake rates, as measured by using (15)N-labelled nitrate, increased linearly with species richness and were driven by niche differences among species. As different forms of algae came to dominate each unique habitat in a stream, the more diverse communities achieved a higher biomass and greater (15)N uptake. When these niche opportunities were experimentally removed by making all of the habitats in a stream uniform, diversity did not influence nitrogen uptake, and biofilms collapsed to a single dominant species. These results provide direct evidence that communities with more species take greater advantage of the niche opportunities in an environment, and this allows diverse systems to capture a greater proportion of biologically available resources such as nitrogen. One implication is that biodiversity may help to buffer natural ecosystems against the ecological impacts of nutrient pollution.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Cardinale, Bradley J -- England -- Nature. 2011 Apr 7;472(7341):86-9. doi: 10.1038/nature09904.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉University of Michigan, School of Natural Resources & Environment, Ann Arbor, Michigan 48109-1041, USA. bradcard@umich.edu〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/21475199" target="_blank"〉PubMed〈/a〉
    Keywords: *Biodiversity ; Biofilms/growth & development ; Biomass ; Chlorophyta/growth & development/*physiology ; Diatoms/growth & development/*physiology ; Environmental Policy ; Models, Biological ; Nitrogen/analysis/metabolism ; Population Density ; Rivers/*chemistry/*microbiology ; Species Specificity
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  • 61
    Publication Date: 2011-02-05
    Description: Suppression of the invasive plant Salvinia molesta by the salvinia weevil is an iconic example of successful biological control. However, in the billabongs (oxbow lakes) of Kakadu National Park, Australia, control is fitful and incomplete. By fitting a process-based nonlinear model to thirteen-year data sets from four billabongs, here we show that incomplete control can be explained by alternative stable states--one state in which salvinia is suppressed and the other in which salvinia escapes weevil control. The shifts between states are associated with annual flooding events. In some years, high water flow reduces weevil populations, allowing the shift from a controlled to an uncontrolled state; in other years, benign conditions for weevils promote the return shift to the controlled state. In most described ecological examples, transitions between alternative stable states are relatively rare, facilitated by slow-moving environmental changes, such as accumulated nutrient loading or climate change. The billabongs of Kakadu give a different manifestation of alternative stable states that generate complex and seemingly unpredictable dynamics. Because shifts between alternative stable states are stochastic, they present a potential management strategy to maximize effective biological control: when the domain of attraction to the state of salvinia control is approached, augmentation of the weevil population or reduction of the salvinia biomass may allow the lower state to trap the system.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Schooler, Shon S -- Salau, Buck -- Julien, Mic H -- Ives, Anthony R -- England -- Nature. 2011 Feb 3;470(7332):86-9. doi: 10.1038/nature09735.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉CSIRO Ecosystem Sciences, Long Pocket Laboratories, Indooroopilly, Queensland 4068, Australia.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/21293376" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Australia ; Biomass ; Ferns/*growth & development/physiology ; Floods ; *Fresh Water ; Introduced Species/statistics & numerical data ; Models, Biological ; Pest Control, Biological/methods/*statistics & numerical data ; Plant Weeds/*growth & development/physiology ; South America/ethnology ; Stochastic Processes ; Time Factors ; Weevils/*physiology ; *Wilderness
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  • 62
    Publication Date: 2011-08-13
    Description: Atmospheric methane (CH(4)) increased through much of the twentieth century, but this trend gradually weakened until a stable state was temporarily reached around the turn of the millennium, after which levels increased once more. The reasons for the slowdown are incompletely understood, with past work identifying changes in fossil fuel, wetland and agricultural sources and hydroxyl (OH) sinks as important causal factors. Here we show that the late-twentieth-century changes in the CH(4) growth rates are best explained by reduced microbial sources in the Northern Hemisphere. Our results, based on synchronous time series of atmospheric CH(4) mixing and (13)C/(12)C ratios and a two-box atmospheric model, indicate that the evolution of the mixing ratio requires no significant change in Southern Hemisphere sources between 1984 and 2005. Observed changes in the interhemispheric difference of (13)C effectively exclude reduced fossil fuel emissions as the primary cause of the slowdown. The (13)C observations are consistent with long-term reductions in agricultural emissions or another microbial source within the Northern Hemisphere. Approximately half (51 +/- 18%) of the decrease in Northern Hemisphere CH(4) emissions can be explained by reduced emissions from rice agriculture in Asia over the past three decades associated with increases in fertilizer application and reductions in water use.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Kai, Fuu Ming -- Tyler, Stanley C -- Randerson, James T -- Blake, Donald R -- England -- Nature. 2011 Aug 10;476(7359):194-7. doi: 10.1038/nature10259.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Earth System Science, University of California, Irvine, California 92697, USA. fmkai@smart.mit.edu〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/21833086" target="_blank"〉PubMed〈/a〉
    Keywords: Agriculture/statistics & numerical data ; Animals ; Asia ; Atmosphere/*chemistry ; Biomass ; Fertilizers/utilization ; Fires ; Fossil Fuels/utilization ; *Geography ; Hydroxyl Radical/chemistry ; Methane/*analysis/metabolism ; Microbial Consortia/*physiology ; Oryza/metabolism ; Time Factors ; Water Supply/statistics & numerical data ; Wetlands
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  • 63
    Publication Date: 2011-04-15
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Mackas, David L -- England -- Nature. 2011 Apr 14;472(7342):E4-5; discussion E8-9. doi: 10.1038/nature09951.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Institute of Ocean Sciences, Fisheries and Oceans Canada, PO Box 6000, Sidney, British Columbia, V8L 4B2, Canada. Dave.Mackas@dfo-mpo.gc.ca〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/21490623" target="_blank"〉PubMed〈/a〉
    Keywords: Aquatic Organisms/growth & development/isolation & purification/metabolism ; Bias (Epidemiology) ; Biomass ; Chlorophyll/analysis/*metabolism ; Data Collection/methods ; Phytoplankton/growth & development/isolation & purification/metabolism ; Reproducibility of Results ; Time Factors
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  • 64
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    Nature Publishing Group (NPG)
    Publication Date: 2011-06-28
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Schubert, Charlotte -- England -- Nature. 2011 Jun 23;474(7352):531-3.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/21702098" target="_blank"〉PubMed〈/a〉
    Keywords: Biochemistry ; Bioengineering/economics/manpower/trends ; Biofuels/economics/*supply & distribution ; Biomass ; Conservation of Energy Resources/economics/*trends ; Employment/economics/statistics & numerical data ; Ethanol/chemical synthesis ; Internationality ; Investments/economics/trends ; Lignin/metabolism ; *Research Personnel/education ; Wood/chemistry
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  • 65
    Publication Date: 2011-09-03
    Description: Nitrogen (N) limits the productivity of many ecosystems worldwide, thereby restricting the ability of terrestrial ecosystems to offset the effects of rising atmospheric CO(2) emissions naturally. Understanding input pathways of bioavailable N is therefore paramount for predicting carbon (C) storage on land, particularly in temperate and boreal forests. Paradigms of nutrient cycling and limitation posit that new N enters terrestrial ecosystems solely from the atmosphere. Here we show that bedrock comprises a hitherto overlooked source of ecologically available N to forests. We report that the N content of soils and forest foliage on N-rich metasedimentary rocks (350-950 mg N kg(-1)) is elevated by more than 50% compared with similar temperate forest sites underlain by N-poor igneous parent material (30-70 mg N kg(-1)). Natural abundance N isotopes attribute this difference to rock-derived N: (15)N/(14)N values for rock, soils and plants are indistinguishable in sites underlain by N-rich lithology, in marked contrast to sites on N-poor substrates. Furthermore, forests associated with N-rich parent material contain on average 42% more carbon in above-ground tree biomass and 60% more carbon in the upper 30 cm of the soil than similar sites underlain by N-poor rocks. Our results raise the possibility that bedrock N input may represent an important and overlooked component of ecosystem N and C cycling elsewhere.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Morford, Scott L -- Houlton, Benjamin Z -- Dahlgren, Randy A -- England -- Nature. 2011 Aug 31;477(7362):78-81. doi: 10.1038/nature10415.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Land, Air and Water Resources, University of California - Davis, California 95616, USA. slmorford@ucdavis.edu〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/21886160" target="_blank"〉PubMed〈/a〉
    Keywords: Biomass ; Carbon/analysis/*metabolism ; Carbon Cycle ; *Ecosystem ; Geologic Sediments/*chemistry ; Geology ; Nitrogen/analysis/*metabolism ; Nitrogen Cycle ; Nitrogen Isotopes/analysis ; Plant Leaves/chemistry ; Soil/chemistry ; Time Factors ; Trees/*chemistry/*metabolism
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  • 66
    Publication Date: 2012-11-09
    Description: Nearly one hundred years ago, the fermentative production of acetone by Clostridium acetobutylicum provided a crucial alternative source of this solvent for manufacture of the explosive cordite. Today there is a resurgence of interest in solventogenic Clostridium species to produce n-butanol and ethanol for use as renewable alternative transportation fuels. Acetone, a product of acetone-n-butanol-ethanol (ABE) fermentation, harbours a nucleophilic alpha-carbon, which is amenable to C-C bond formation with the electrophilic alcohols produced in ABE fermentation. This functionality can be used to form higher-molecular-mass hydrocarbons similar to those found in current jet and diesel fuels. Here we describe the integration of biological and chemocatalytic routes to convert ABE fermentation products efficiently into ketones by a palladium-catalysed alkylation. Tuning of the reaction conditions permits the production of either petrol or jet and diesel precursors. Glyceryl tributyrate was used for the in situ selective extraction of both acetone and alcohols to enable the simple integration of ABE fermentation and chemical catalysis, while reducing the energy demand of the overall process. This process provides a means to selectively produce petrol, jet and diesel blend stocks from lignocellulosic and cane sugars at yields near their theoretical maxima.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Anbarasan, Pazhamalai -- Baer, Zachary C -- Sreekumar, Sanil -- Gross, Elad -- Binder, Joseph B -- Blanch, Harvey W -- Clark, Douglas S -- Toste, F Dean -- England -- Nature. 2012 Nov 8;491(7423):235-9. doi: 10.1038/nature11594.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Chemistry, University of California, Berkeley, California 94720, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/23135469" target="_blank"〉PubMed〈/a〉
    Keywords: 1-Butanol/metabolism ; Acetone/metabolism ; Alkylation ; *Biofuels ; Biomass ; Catalysis ; Clostridium acetobutylicum/*metabolism ; Ethanol/metabolism ; *Fermentation ; *Gasoline ; Ketones/chemistry/metabolism ; Lignin/chemistry/metabolism ; Models, Chemical ; Palladium/*chemistry ; Saccharum/chemistry ; Time Factors ; Triglycerides/chemistry
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  • 67
    Publication Date: 2012-09-22
    Description: The average nitrogen-to-phosphorus ratio of marine phytoplankton (16N:1P) is closely matched to the nutrient content of mean ocean waters (14.3N:1P). This condition is thought to arise from biological control over the ocean's nitrogen budget, in which removal of bioavailable nitrogen by denitrifying bacteria ensures widespread selection for diazotrophic phytoplankton that replenish this essential nutrient when it limits the growth of other species. Here we show that in the context of a realistic ocean circulation model, and a uniform N:P ratio of plankton biomass, this feedback mechanism yields an oceanic nitrate deficit more than double its observed value. The critical missing phenomenon is diversity in the metabolic N:P requirement of phytoplankton, which has recently been shown to exhibit large-scale patterns associated with species composition. When we model these variations, such that diazotrophs compete with high N:P communities in subtropical regions, the ocean nitrogen inventory rises and may even exceed the average N:P ratio of plankton. The latter condition, previously considered impossible, is prevented in the modern ocean by shallow circulations that communicate stoichiometric signals from remote biomes dominated by diatoms with low N:P ratios. Large-scale patterns of plankton diversity and the circulation pathways connecting them are thus key factors determining the availability of fixed nitrogen in the ocean.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Weber, Thomas -- Deutsch, Curtis -- England -- Nature. 2012 Sep 20;489(7416):419-22. doi: 10.1038/nature11357.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉University of California Los Angeles, Los Angeles, California 90095, USA. tweber@atmos.ucla.edu〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/22996557" target="_blank"〉PubMed〈/a〉
    Keywords: Aquatic Organisms/growth & development/*metabolism ; *Biodiversity ; Biomass ; Biota ; Denitrification ; Diatoms/growth & development/metabolism ; Feedback, Physiological ; Nitrates/metabolism ; Nitrogen/*metabolism ; Nitrogen Fixation ; Phosphorus/metabolism ; Phytoplankton/growth & development/metabolism ; Plankton/growth & development/*metabolism ; Seawater/*chemistry/microbiology ; *Water Movements
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  • 68
    Publication Date: 2012-10-06
    Description: Methane is an important greenhouse gas that is emitted from multiple natural and anthropogenic sources. Atmospheric methane concentrations have varied on a number of timescales in the past, but what has caused these variations is not always well understood. The different sources and sinks of methane have specific isotopic signatures, and the isotopic composition of methane can therefore help to identify the environmental drivers of variations in atmospheric methane concentrations. Here we present high-resolution carbon isotope data (delta(13)C content) for methane from two ice cores from Greenland for the past two millennia. We find that the delta(13)C content underwent pronounced centennial-scale variations between 100 BC and AD 1600. With the help of two-box model calculations, we show that the centennial-scale variations in isotope ratios can be attributed to changes in pyrogenic and biogenic sources. We find correlations between these source changes and both natural climate variability--such as the Medieval Climate Anomaly and the Little Ice Age--and changes in human population and land use, such as the decline of the Roman empire and the Han dynasty, and the population expansion during the medieval period.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Sapart, C J -- Monteil, G -- Prokopiou, M -- van de Wal, R S W -- Kaplan, J O -- Sperlich, P -- Krumhardt, K M -- van der Veen, C -- Houweling, S -- Krol, M C -- Blunier, T -- Sowers, T -- Martinerie, P -- Witrant, E -- Dahl-Jensen, D -- Rockmann, T -- England -- Nature. 2012 Oct 4;490(7418):85-8. doi: 10.1038/nature11461.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Institute for Marine and Atmospheric Research Utrecht, Utrecht University, Princetonplein 5, 3584CC Utrecht, The Netherlands. c.j.sapart@uu.nl〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/23038470" target="_blank"〉PubMed〈/a〉
    Keywords: Atmosphere/chemistry ; Biomass ; Carbon Isotopes ; Climate Change/history ; Fires/*history ; Greenland ; History, 15th Century ; History, 16th Century ; History, 17th Century ; History, 18th Century ; History, 19th Century ; History, 20th Century ; History, Ancient ; History, Medieval ; Holy Roman Empire ; Human Activities/*history ; Ice/analysis ; Methane/analysis/*history/*metabolism ; Population Dynamics ; Roman World/history
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  • 69
    Publication Date: 2011-12-27
    Description: Tipping points, at which complex systems can shift abruptly from one state to another, are notoriously difficult to predict. Theory proposes that early warning signals may be based on the phenomenon that recovery rates from small perturbations should tend to zero when approaching a tipping point; however, evidence that this happens in living systems is lacking. Here we test such 'critical slowing down' using a microcosm in which photo-inhibition drives a cyanobacterial population to a classical tipping point when a critical light level is exceeded. We show that over a large range of conditions, recovery from small perturbations becomes slower as the system comes closer to the critical point. In addition, autocorrelation in the subtle fluctuations of the system's state rose towards the tipping point, supporting the idea that this metric can be used as an indirect indicator of slowing down. Although stochasticity prohibits prediction of the timing of critical transitions, our results suggest that indicators of slowing down may be used to rank complex systems on a broad scale from resilient to fragile.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Veraart, Annelies J -- Faassen, Elisabeth J -- Dakos, Vasilis -- van Nes, Egbert H -- Lurling, Miquel -- Scheffer, Marten -- 268732/European Research Council/International -- England -- Nature. 2011 Dec 25;481(7381):357-9. doi: 10.1038/nature10723.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Aquatic Ecology and Water Quality Management, Wageningen University, PO Box 47, NL-6700 AA, Wageningen, The Netherlands.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/22198671" target="_blank"〉PubMed〈/a〉
    Keywords: Biomass ; Cyanobacteria/growth & development/*radiation effects ; Feedback/*radiation effects ; Kinetics ; *Light ; *Models, Biological ; Photosynthesis/radiation effects ; Stochastic Processes
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  • 70
    Publication Date: 2013-11-01
    Description: The biogeochemical cycles of carbon (C), nitrogen (N) and phosphorus (P) are interlinked by primary production, respiration and decomposition in terrestrial ecosystems. It has been suggested that the C, N and P cycles could become uncoupled under rapid climate change because of the different degrees of control exerted on the supply of these elements by biological and geochemical processes. Climatic controls on biogeochemical cycles are particularly relevant in arid, semi-arid and dry sub-humid ecosystems (drylands) because their biological activity is mainly driven by water availability. The increase in aridity predicted for the twenty-first century in many drylands worldwide may therefore threaten the balance between these cycles, differentially affecting the availability of essential nutrients. Here we evaluate how aridity affects the balance between C, N and P in soils collected from 224 dryland sites from all continents except Antarctica. We find a negative effect of aridity on the concentration of soil organic C and total N, but a positive effect on the concentration of inorganic P. Aridity is negatively related to plant cover, which may favour the dominance of physical processes such as rock weathering, a major source of P to ecosystems, over biological processes that provide more C and N, such as litter decomposition. Our findings suggest that any predicted increase in aridity with climate change will probably reduce the concentrations of N and C in global drylands, but increase that of P. These changes would uncouple the C, N and P cycles in drylands and could negatively affect the provision of key services provided by these ecosystems.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Delgado-Baquerizo, Manuel -- Maestre, Fernando T -- Gallardo, Antonio -- Bowker, Matthew A -- Wallenstein, Matthew D -- Quero, Jose Luis -- Ochoa, Victoria -- Gozalo, Beatriz -- Garcia-Gomez, Miguel -- Soliveres, Santiago -- Garcia-Palacios, Pablo -- Berdugo, Miguel -- Valencia, Enrique -- Escolar, Cristina -- Arredondo, Tulio -- Barraza-Zepeda, Claudia -- Bran, Donaldo -- Carreira, Jose Antonio -- Chaieb, Mohamed -- Conceicao, Abel A -- Derak, Mchich -- Eldridge, David J -- Escudero, Adrian -- Espinosa, Carlos I -- Gaitan, Juan -- Gatica, M Gabriel -- Gomez-Gonzalez, Susana -- Guzman, Elizabeth -- Gutierrez, Julio R -- Florentino, Adriana -- Hepper, Estela -- Hernandez, Rosa M -- Huber-Sannwald, Elisabeth -- Jankju, Mohammad -- Liu, Jushan -- Mau, Rebecca L -- Miriti, Maria -- Monerris, Jorge -- Naseri, Kamal -- Noumi, Zouhaier -- Polo, Vicente -- Prina, Anibal -- Pucheta, Eduardo -- Ramirez, Elizabeth -- Ramirez-Collantes, David A -- Romao, Roberto -- Tighe, Matthew -- Torres, Duilio -- Torres-Diaz, Cristian -- Ungar, Eugene D -- Val, James -- Wamiti, Wanyoike -- Wang, Deli -- Zaady, Eli -- England -- Nature. 2013 Oct 31;502(7473):672-6. doi: 10.1038/nature12670.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉1] Departamento de Sistemas Fisicos, Quimicos y Naturales, Universidad Pablo de Olavide, Carretera de Utrera, kilometro 1, 41013 Sevilla, Spain [2] Area de Biodiversidad y Conservacion, Departamento de Biologia y Geologia, Escuela Superior de Ciencias Experimentales y Tecnologia, Universidad Rey Juan Carlos, Calle Tulipan Sin Numero, 28933 Mostoles, Spain.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/24172979" target="_blank"〉PubMed〈/a〉
    Keywords: Aluminum Silicates/analysis ; Biomass ; Carbon/analysis/metabolism ; Carbon Cycle ; Climate Change ; *Desert Climate ; *Desiccation ; *Ecosystem ; *Geography ; Models, Theoretical ; Nitrogen/analysis/metabolism ; Nitrogen Cycle ; Phosphoric Monoester Hydrolases/analysis/metabolism ; Phosphorus/analysis/metabolism ; Plants/metabolism ; Soil/*chemistry
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  • 71
    Publication Date: 2013-11-22
    Description: Returning native species to habitats degraded by biological invasions is a critical conservation goal. A leading hypothesis poses that exotic plant dominance is self-reinforced by impacts on ecosystem processes, leading to persistent stable states. Invaders have been documented to modify fire regimes, alter soil nutrients or shift microbial communities in ways that feed back to benefit themselves over competitors. However, few studies have followed invasions through time to ask whether ecosystem impacts and feedbacks persist. Here we return to woodland sites in Hawai'i Volcanoes National Park that were invaded by exotic C4 grasses in the 1960s, the ecosystem impacts of which were studied intensively in the 1990s. We show that positive feedbacks between exotic grasses and soil nitrogen cycling have broken down, but rather than facilitating native vegetation, the weakening feedbacks facilitate new exotic species. Data from the 1990s showed that exotic grasses increased nitrogen-mineralization rates by two- to fourfold, but were nitrogen-limited. Thus, the impacts of the invader created a positive feedback early in the invasion. We now show that annual net soil nitrogen mineralization has since dropped to pre-invasion levels. In addition, a seedling outplanting experiment that varied soil nitrogen and grass competition demonstrates that the changing impacts of grasses do not favour native species re-establishment. Instead, decreased nitrogen availability most benefits another aggressive invader, the nitrogen-fixing tree Morella faya. Long-term studies of invasions may reveal that ecosystem impacts and feedbacks shift over time, but that this may not benefit native species recovery.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Yelenik, Stephanie G -- D'Antonio, Carla M -- England -- Nature. 2013 Nov 28;503(7477):517-20. doi: 10.1038/nature12798. Epub 2013 Nov 20.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉1] Department of Ecology, Evolution, and Marine Biology, University of California, Santa Barbara, California 93106, USA [2] US Geological Survey, Pacific Island Ecosystems Research Center, Hawai'i Volcanoes National Park, Hawai'i 96718, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/24256723" target="_blank"〉PubMed〈/a〉
    Keywords: Biomass ; *Ecosystem ; Feedback, Physiological ; Fires ; Hawaii ; *Introduced Species ; Nitrogen/metabolism ; Nitrogen Fixation ; Poaceae/growth & development/metabolism/*physiology ; Seedlings/growth & development ; Soil/chemistry ; Species Specificity ; Time Factors ; Volcanic Eruptions
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  • 72
    Publication Date: 2013-02-08
    Description: Long-term and persistent human disturbances have simultaneously altered the stability and diversity of ecological systems, with disturbances directly reducing functional attributes such as invasion resistance, while eliminating the buffering effects of high species diversity. Theory predicts that this combination of environmental change and diversity loss increases the risk of abrupt and potentially irreversible ecosystem collapse, but long-term empirical evidence from natural systems is lacking. Here we demonstrate this relationship in a degraded but species-rich pyrogenic grassland in which the combined effects of fire suppression, invasion and trophic collapse have created a species-poor grassland that is highly productive, resilient to yearly climatic fluctuations, and resistant to invasion, but vulnerable to rapid collapse after the re-introduction of fire. We initially show how human disturbance has created a negative relationship between diversity and function, contrary to theoretical predictions. Fire prevention since the mid-nineteenth century is associated with the loss of plant species but it has stabilized high-yield annual production and invasion resistance, comparable to a managed high-yield low-diversity agricultural system. In managing for fire suppression, however, a hidden vulnerability to sudden environmental change emerges that is explained by the elimination of the buffering effects of high species diversity. With the re-introduction of fire, grasslands only persist in areas with remnant concentrations of native species, in which a range of rare and mostly functionally redundant plants proliferate after burning and prevent extensive invasion including a rapid conversion towards woodland. This research shows how biodiversity can be crucial for ecosystem stability despite appearing functionally insignificant beforehand, a relationship probably applicable to many ecosystems given the globally prevalent combination of intensive long-term land management and species loss.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉MacDougall, A S -- McCann, K S -- Gellner, G -- Turkington, R -- England -- Nature. 2013 Feb 7;494(7435):86-9. doi: 10.1038/nature11869.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Integrative Biology, University of Guelph, Guelph, Ontario N1G 2W1, Canada. amacdo02@uoguelph.ca〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/23389543" target="_blank"〉PubMed〈/a〉
    Keywords: *Biodiversity ; Biomass ; Climate Change ; Ecology/methods ; *Ecosystem ; Fires ; *Human Activities ; Introduced Species ; Poaceae/growth & development ; Population Dynamics ; Trees/growth & development
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  • 73
    Publication Date: 2014-07-22
    Description: Variation in terrestrial net primary production (NPP) with climate is thought to originate from a direct influence of temperature and precipitation on plant metabolism. However, variation in NPP may also result from an indirect influence of climate by means of plant age, stand biomass, growing season length and local adaptation. To identify the relative importance of direct and indirect climate effects, we extend metabolic scaling theory to link hypothesized climate influences with NPP, and assess hypothesized relationships using a global compilation of ecosystem woody plant biomass and production data. Notably, age and biomass explained most of the variation in production whereas temperature and precipitation explained almost none, suggesting that climate indirectly (not directly) influences production. Furthermore, our theory shows that variation in NPP is characterized by a common scaling relationship, suggesting that global change models can incorporate the mechanisms governing this relationship to improve predictions of future ecosystem function.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Michaletz, Sean T -- Cheng, Dongliang -- Kerkhoff, Andrew J -- Enquist, Brian J -- England -- Nature. 2014 Aug 7;512(7512):39-43. doi: 10.1038/nature13470. Epub 2014 Jul 20.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Ecology and Evolutionary Biology, University of Arizona, Tucson, Arizona 85721, USA. ; Key Laboratory of Humid Subtropical Eco-geographical Process, Fujian Normal University, Ministry of Education, Fuzhou, Fujian Province 350007, China. ; Department of Biology, Kenyon College, Gambier, Ohio 43022, USA. ; 1] Department of Ecology and Evolutionary Biology, University of Arizona, Tucson, Arizona 85721, USA [2] The Santa Fe Institute, USA, 1399 Hyde Park Road, Santa Fe, New Mexico 87501, USA [3] The iPlant Collaborative, Thomas W. Keating Bioresearch Building, 1657 East Helen Street, Tucson, Arizona 85721, USA [4] Aspen Center for Environmental Studies, 100 Puppy Smith Street, Aspen, Colorado 81611, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/25043056" target="_blank"〉PubMed〈/a〉
    Keywords: Adaptation, Physiological ; Biomass ; *Climate ; *Ecosystem ; *Internationality ; Plant Development ; Plants/*metabolism ; Rain ; Seasons ; Temperature ; Wood
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  • 74
    Publication Date: 2014-09-19
    Description: Rapid industrialization and urbanization in developing countries has led to an increase in air pollution, along a similar trajectory to that previously experienced by the developed nations. In China, particulate pollution is a serious environmental problem that is influencing air quality, regional and global climates, and human health. In response to the extremely severe and persistent haze pollution experienced by about 800 million people during the first quarter of 2013 (refs 4, 5), the Chinese State Council announced its aim to reduce concentrations of PM2.5 (particulate matter with an aerodynamic diameter less than 2.5 micrometres) by up to 25 per cent relative to 2012 levels by 2017 (ref. 6). Such efforts however require elucidation of the factors governing the abundance and composition of PM2.5, which remain poorly constrained in China. Here we combine a comprehensive set of novel and state-of-the-art offline analytical approaches and statistical techniques to investigate the chemical nature and sources of particulate matter at urban locations in Beijing, Shanghai, Guangzhou and Xi'an during January 2013. We find that the severe haze pollution event was driven to a large extent by secondary aerosol formation, which contributed 30-77 per cent and 44-71 per cent (average for all four cities) of PM2.5 and of organic aerosol, respectively. On average, the contribution of secondary organic aerosol (SOA) and secondary inorganic aerosol (SIA) are found to be of similar importance (SOA/SIA ratios range from 0.6 to 1.4). Our results suggest that, in addition to mitigating primary particulate emissions, reducing the emissions of secondary aerosol precursors from, for example, fossil fuel combustion and biomass burning is likely to be important for controlling China's PM2.5 levels and for reducing the environmental, economic and health impacts resulting from particulate pollution.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Huang, Ru-Jin -- Zhang, Yanlin -- Bozzetti, Carlo -- Ho, Kin-Fai -- Cao, Jun-Ji -- Han, Yongming -- Daellenbach, Kaspar R -- Slowik, Jay G -- Platt, Stephen M -- Canonaco, Francesco -- Zotter, Peter -- Wolf, Robert -- Pieber, Simone M -- Bruns, Emily A -- Crippa, Monica -- Ciarelli, Giancarlo -- Piazzalunga, Andrea -- Schwikowski, Margit -- Abbaszade, Gulcin -- Schnelle-Kreis, Jurgen -- Zimmermann, Ralf -- An, Zhisheng -- Szidat, Sonke -- Baltensperger, Urs -- El Haddad, Imad -- Prevot, Andre S H -- England -- Nature. 2014 Oct 9;514(7521):218-22. doi: 10.1038/nature13774. Epub 2014 Sep 17.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉1] Laboratory of Atmospheric Chemistry, Paul Scherrer Institute (PSI), 5232 Villigen, Switzerland [2] State Key Laboratory of Loess and Quaternary Geology (SKLLQG), and Key Laboratory of Aerosol Chemistry and Physics, Institute of Earth Environment, Chinese Academy of Sciences, Xi'an 710075, China [3]. ; 1] Department of Chemistry and Biochemistry, and Oeschger Centre for Climate Change Research, University of Bern, 3012 Bern, Switzerland [2] Laboratory of Radiochemistry and Environmental Chemistry, Paul Scherrer Institute (PSI), 5232 Villigen, Switzerland. ; Laboratory of Atmospheric Chemistry, Paul Scherrer Institute (PSI), 5232 Villigen, Switzerland. ; The Jockey Club School of Public Health and Primary Care, The Chinese University of Hong Kong, Hong Kong, China. ; State Key Laboratory of Loess and Quaternary Geology (SKLLQG), and Key Laboratory of Aerosol Chemistry and Physics, Institute of Earth Environment, Chinese Academy of Sciences, Xi'an 710075, China. ; 1] Laboratory of Atmospheric Chemistry, Paul Scherrer Institute (PSI), 5232 Villigen, Switzerland [2] European Commission, Joint Research Centre, Institute for Environment and Sustainability, Air and Climate Unit, Via Fermi, 2749, 21027 Ispra, Italy. ; Department of Earth and Environmental Sciences, University of Milano Bicocca, Piazza della Scienza 1, Milan 20126, Italy. ; Helmholtz Zentrum Munchen, German Research Center for Environmental Health (GmbH), Joint Mass Spectrometry Centre, Cooperation Group Comprehensive Molecular Analytics and Helmholtz Virtual Institute of Complex Molecular Systems in Environmental Health - Aerosol and Health (HICE), 85764 Neuherberg, Germany. ; 1] Helmholtz Zentrum Munchen, German Research Center for Environmental Health (GmbH), Joint Mass Spectrometry Centre, Cooperation Group Comprehensive Molecular Analytics and Helmholtz Virtual Institute of Complex Molecular Systems in Environmental Health - Aerosol and Health (HICE), 85764 Neuherberg, Germany [2] University of Rostock, Joint Mass Spectrometry Centre, Institute of Chemistry, Analytical Chemistry, 18015 Rostock, Germany. ; Department of Chemistry and Biochemistry, and Oeschger Centre for Climate Change Research, University of Bern, 3012 Bern, Switzerland. ; 1] Laboratory of Atmospheric Chemistry, Paul Scherrer Institute (PSI), 5232 Villigen, Switzerland [2].〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/25231863" target="_blank"〉PubMed〈/a〉
    Keywords: Aerosols/*analysis/chemistry ; Air Pollutants/*analysis/*chemistry ; Air Pollution/*analysis ; Biomass ; China ; Cities ; Environmental Monitoring ; Fossil Fuels ; Humans ; Organic Chemicals/analysis/chemistry ; Particulate Matter/*analysis/*chemistry ; Public Health ; Volatile Organic Compounds/analysis/chemistry
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  • 75
    Publication Date: 2014-11-21
    Description: The atmospheric carbon dioxide (CO2) record displays a prominent seasonal cycle that arises mainly from changes in vegetation growth and the corresponding CO2 uptake during the boreal spring and summer growing seasons and CO2 release during the autumn and winter seasons. The CO2 seasonal amplitude has increased over the past five decades, suggesting an increase in Northern Hemisphere biospheric activity. It has been proposed that vegetation growth may have been stimulated by higher concentrations of CO2 as well as by warming in recent decades, but such mechanisms have been unable to explain the full range and magnitude of the observed increase in CO2 seasonal amplitude. Here we suggest that the intensification of agriculture (the Green Revolution, in which much greater crop yield per unit area was achieved by hybridization, irrigation and fertilization) during the past five decades is a driver of changes in the seasonal characteristics of the global carbon cycle. Our analysis of CO2 data and atmospheric inversions shows a robust 15 per cent long-term increase in CO2 seasonal amplitude from 1961 to 2010, punctuated by large decadal and interannual variations. Using a terrestrial carbon cycle model that takes into account high-yield cultivars, fertilizer use and irrigation, we find that the long-term increase in CO2 seasonal amplitude arises from two major regions: the mid-latitude cropland between 25 degrees N and 60 degrees N and the high-latitude natural vegetation between 50 degrees N and 70 degrees N. The long-term trend of seasonal amplitude increase is 0.311 +/- 0.027 per cent per year, of which sensitivity experiments attribute 45, 29 and 26 per cent to land-use change, climate variability and change, and increased productivity due to CO2 fertilization, respectively. Vegetation growth was earlier by one to two weeks, as measured by the mid-point of vegetation carbon uptake, and took up 0.5 petagrams more carbon in July, the height of the growing season, during 2001-2010 than in 1961-1970, suggesting that human land use and management contribute to seasonal changes in the CO2 exchange between the biosphere and the atmosphere.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Zeng, Ning -- Zhao, Fang -- Collatz, George J -- Kalnay, Eugenia -- Salawitch, Ross J -- West, Tristram O -- Guanter, Luis -- England -- Nature. 2014 Nov 20;515(7527):394-7. doi: 10.1038/nature13893.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Atmospheric and Oceanic Science, and Earth System Science Interdisciplinary Center, University of Maryland, College Park, Maryland 20742, USA. ; Hydrospheric and Biospheric Sciences, NASA Goddard Space Flight Center, Greenbelt, Maryland 20771, USA. ; Joint Global Change Research Institute, Pacific Northwest National Laboratory, College Park, Maryland 20740, USA. ; Institute for Space Sciences, Freie Universitat Berlin, 12165 Berlin, Germany.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/25409829" target="_blank"〉PubMed〈/a〉
    Keywords: Agriculture/*methods/*statistics & numerical data ; Atmosphere/*chemistry ; Biomass ; Biota ; *Carbon Cycle ; Carbon Dioxide/*analysis/metabolism ; Climate Change/statistics & numerical data ; Crops, Agricultural/growth & development/metabolism ; Efficiency ; Factor Analysis, Statistical ; Geography ; Hawaii ; *Seasons
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  • 76
    Publication Date: 2014-03-29
    Description: Lignin is a phenylpropanoid-derived heteropolymer important for the strength and rigidity of the plant secondary cell wall. Genetic disruption of lignin biosynthesis has been proposed as a means to improve forage and bioenergy crops, but frequently results in stunted growth and developmental abnormalities, the mechanisms of which are poorly understood. Here we show that the phenotype of a lignin-deficient Arabidopsis mutant is dependent on the transcriptional co-regulatory complex, Mediator. Disruption of the Mediator complex subunits MED5a (also known as REF4) and MED5b (also known as RFR1) rescues the stunted growth, lignin deficiency and widespread changes in gene expression seen in the phenylpropanoid pathway mutant ref8, without restoring the synthesis of guaiacyl and syringyl lignin subunits. Cell walls of rescued med5a/5b ref8 plants instead contain a novel lignin consisting almost exclusively of p-hydroxyphenyl lignin subunits, and moreover exhibit substantially facilitated polysaccharide saccharification. These results demonstrate that guaiacyl and syringyl lignin subunits are largely dispensable for normal growth and development, implicate Mediator in an active transcriptional process responsible for dwarfing and inhibition of lignin biosynthesis, and suggest that the transcription machinery and signalling pathways responding to cell wall defects may be important targets to include in efforts to reduce biomass recalcitrance.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Bonawitz, Nicholas D -- Kim, Jeong Im -- Tobimatsu, Yuki -- Ciesielski, Peter N -- Anderson, Nickolas A -- Ximenes, Eduardo -- Maeda, Junko -- Ralph, John -- Donohoe, Bryon S -- Ladisch, Michael -- Chapple, Clint -- England -- Nature. 2014 May 15;509(7500):376-80. doi: 10.1038/nature13084. Epub 2014 Mar 16.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉1] Department of Biochemistry, Purdue University, West Lafayette, Indiana 47907, USA [2] Dow AgroSciences LLC, 9330 Zionsville Road, Indianapolis, Indiana 46268, USA (N.D.B.); Department of Agronomy, University of Wisconsin-Madison, 1575 Linden Drive, Madison, Wisconsin 53706, USA (J.M.). ; Department of Biochemistry, Purdue University, West Lafayette, Indiana 47907, USA. ; Department of Biochemistry, University of Wisconsin-Madison, Madison, Wisconsin 53706, USA. ; Biosciences Center, National Renewable Energy Laboratory, Golden, Colorado 80401, USA. ; Department of Agricultural and Biological Engineering and the Laboratory of Renewable Resources Engineering, Purdue University, West Lafayette, Indiana 47907, USA. ; 1] Department of Biochemistry, University of Wisconsin-Madison, Madison, Wisconsin 53706, USA [2] Department of Biological Systems Engineering, University of Wisconsin-Madison, Madison, Wisconsin 53706, USA [3] DOE Great Lakes Bioenergy Research Center, and Wisconsin Energy Institute, University of Wisconsin-Madison, Madison, Wisconsin 53726, USA. ; 1] Department of Agricultural and Biological Engineering and the Laboratory of Renewable Resources Engineering, Purdue University, West Lafayette, Indiana 47907, USA [2] Weldon School of Biomedical Engineering, Purdue University, West Lafayette, Indiana 47907, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/24670657" target="_blank"〉PubMed〈/a〉
    Keywords: Arabidopsis/*genetics/*growth & development/metabolism ; Arabidopsis Proteins/*genetics/metabolism ; Biofuels ; Biomass ; Cell Wall/chemistry/metabolism ; Cellulose/metabolism ; Gene Expression Regulation, Plant/genetics ; Lignin/biosynthesis/chemistry/*metabolism ; Mediator Complex/chemistry/deficiency/*genetics/metabolism ; Mutation/*genetics ; Phenotype ; Plants, Genetically Modified ; Protein Subunits/genetics/metabolism ; Transcription, Genetic/genetics
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  • 77
    Publication Date: 2015-03-27
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Fares, Silvano -- Mugnozza, Giuseppe Scarascia -- Corona, Piermaria -- Palahi, Marc -- England -- Nature. 2015 Mar 26;519(7544):407-9. doi: 10.1038/519407a.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Research Centre for the Soil-Plant System, Council for Agricultural Research and Economics, Rome, Italy. ; Department for Innovation in Biological, Agro-food and Forest Systems at Tuscia University, Viterbo, Italy. ; Forestry Research Centre, Council for Agricultural Research and Economics, Arezzo, Italy. ; European Forest Institute, Joensuu, Finland.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/25810187" target="_blank"〉PubMed〈/a〉
    Keywords: Biofuels ; Biomass ; Carbon Dioxide/*metabolism ; *Carbon Sequestration ; Climate Change ; Conservation of Natural Resources/economics/*methods ; Disasters ; Europe ; Fires ; Forestry/economics/*methods ; *Forests ; Trees/classification/*growth & development/*metabolism/parasitology ; Wood
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  • 78
    Publication Date: 2014-10-16
    Description: In experimental plant communities, relationships between biodiversity and ecosystem functioning have been found to strengthen over time, a fact often attributed to increased resource complementarity between species in mixtures and negative plant-soil feedbacks in monocultures. Here we show that selection for niche differentiation between species can drive this increasing biodiversity effect. Growing 12 grassland species in test monocultures and mixtures, we found character displacement between species and increased biodiversity effects when plants had been selected over 8 years in species mixtures rather than in monocultures. When grown in mixtures, relative differences in height and specific leaf area between plant species selected in mixtures (mixture types) were greater than between species selected in monocultures (monoculture types). Furthermore, net biodiversity and complementarity effects were greater in mixtures of mixture types than in mixtures of monoculture types. Our study demonstrates a novel mechanism for the increase in biodiversity effects: selection for increased niche differentiation through character displacement. Selection in diverse mixtures may therefore increase species coexistence and ecosystem functioning in natural communities and may also allow increased mixture yields in agriculture or forestry. However, loss of biodiversity and prolonged selection of crops in monoculture may compromise this potential for selection in the longer term.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Zuppinger-Dingley, Debra -- Schmid, Bernhard -- Petermann, Jana S -- Yadav, Varuna -- De Deyn, Gerlinde B -- Flynn, Dan F B -- England -- Nature. 2014 Nov 6;515(7525):108-11. doi: 10.1038/nature13869. Epub 2014 Oct 15.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Institute of Evolutionary Biology and Environmental Studies &Zurich-Basel Plant Science Center, University of Zurich, Winterthurerstrasse 190, CH-8057 Zurich, Switzerland. ; 1] Institute of Biology, Freie Universitat Berlin, Konigin-Luise-Str. 1-3, 14195 Berlin, Germany [2] Berlin-Brandenburg Institute of Advanced Biodiversity Research (BBIB), 14195 Berlin, Germany. ; Environmental Sciences, University of Wageningen, Droevendaalsesteeg 4, 6708PB Wageningen, the Netherlands. ; 1] Institute of Evolutionary Biology and Environmental Studies &Zurich-Basel Plant Science Center, University of Zurich, Winterthurerstrasse 190, CH-8057 Zurich, Switzerland [2] Arnold Arboretum, Harvard University, Boston, Massachusetts 02131, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/25317555" target="_blank"〉PubMed〈/a〉
    Keywords: *Adaptation, Biological ; Asteraceae/physiology ; *Biodiversity ; Biological Evolution ; Biomass ; Fabaceae/physiology ; *Plant Physiological Phenomena ; Poaceae/physiology ; Selection, Genetic ; Time Factors
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  • 79
    Publication Date: 2015-07-23
    Description: Atmospheric methane is the second most important greenhouse gas after carbon dioxide, and is responsible for about 20% of the global warming effect since pre-industrial times. Rice paddies are the largest anthropogenic methane source and produce 7-17% of atmospheric methane. Warm waterlogged soil and exuded nutrients from rice roots provide ideal conditions for methanogenesis in paddies with annual methane emissions of 25-100-million tonnes. This scenario will be exacerbated by an expansion in rice cultivation needed to meet the escalating demand for food in the coming decades. There is an urgent need to establish sustainable technologies for increasing rice production while reducing methane fluxes from rice paddies. However, ongoing efforts for methane mitigation in rice paddies are mainly based on farming practices and measures that are difficult to implement. Despite proposed strategies to increase rice productivity and reduce methane emissions, no high-starch low-methane-emission rice has been developed. Here we show that the addition of a single transcription factor gene, barley SUSIBA2 (refs 7, 8), conferred a shift of carbon flux to SUSIBA2 rice, favouring the allocation of photosynthates to aboveground biomass over allocation to roots. The altered allocation resulted in an increased biomass and starch content in the seeds and stems, and suppressed methanogenesis, possibly through a reduction in root exudates. Three-year field trials in China demonstrated that the cultivation of SUSIBA2 rice was associated with a significant reduction in methane emissions and a decrease in rhizospheric methanogen levels. SUSIBA2 rice offers a sustainable means of providing increased starch content for food production while reducing greenhouse gas emissions from rice cultivation. Approaches to increase rice productivity and reduce methane emissions as seen in SUSIBA2 rice may be particularly beneficial in a future climate with rising temperatures resulting in increased methane emissions from paddies.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Su, J -- Hu, C -- Yan, X -- Jin, Y -- Chen, Z -- Guan, Q -- Wang, Y -- Zhong, D -- Jansson, C -- Wang, F -- Schnurer, A -- Sun, C -- England -- Nature. 2015 Jul 30;523(7562):602-6. doi: 10.1038/nature14673. Epub 2015 Jul 22.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉1] Institute of Biotechnology, Fujian Academy of Agricultural Sciences, Fuzhou 350003, China [2] Department of Plant Biology, Uppsala BioCenter, Linnean Center for Plant Biology, Swedish University of Agricultural Sciences, PO Box 7080, SE-75007 Uppsala, Sweden. ; Department of Plant Biology, Uppsala BioCenter, Linnean Center for Plant Biology, Swedish University of Agricultural Sciences, PO Box 7080, SE-75007 Uppsala, Sweden. ; 1] Department of Plant Biology, Uppsala BioCenter, Linnean Center for Plant Biology, Swedish University of Agricultural Sciences, PO Box 7080, SE-75007 Uppsala, Sweden [2] Hunan Provincial Key Laboratory of Crop Germplasm Innovation and Utilization, Hunan Agricultural University, Changsha 410128, China. ; Institute of Biotechnology, Fujian Academy of Agricultural Sciences, Fuzhou 350003, China. ; The Environmental Molecular Sciences Laboratory (EMSL), Pacific Northwest National Laboratory, PO Box 999, K8-93 Richland, Washington 99352, USA. ; Department of Microbiology, Uppsala BioCenter, Swedish University of Agricultural Sciences, SE-75007 Uppsala, Sweden.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26200336" target="_blank"〉PubMed〈/a〉
    Keywords: Agriculture/methods/trends ; Atmosphere/chemistry ; Biomass ; Carbon Cycle ; China ; Conservation of Natural Resources/methods ; Food Supply/methods ; Genotype ; Global Warming/prevention & control ; Greenhouse Effect/*prevention & control ; Hordeum/*genetics ; Methane/biosynthesis/*metabolism ; Molecular Sequence Data ; Oryza/genetics/growth & development/*metabolism ; Phenotype ; Photosynthesis ; Plant Components, Aerial/metabolism ; Plant Proteins/genetics/*metabolism ; Plant Roots/metabolism ; Plants, Genetically Modified ; Rhizosphere ; Seeds/metabolism ; Starch/biosynthesis/*metabolism ; Transcription Factors/genetics/*metabolism
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  • 80
    Publication Date: 2015-12-04
    Description: Overflow metabolism refers to the seemingly wasteful strategy in which cells use fermentation instead of the more efficient respiration to generate energy, despite the availability of oxygen. Known as the Warburg effect in the context of cancer growth, this phenomenon occurs ubiquitously for fast-growing cells, including bacteria, fungi and mammalian cells, but its origin has remained unclear despite decades of research. Here we study metabolic overflow in Escherichia coli, and show that it is a global physiological response used to cope with changing proteomic demands of energy biogenesis and biomass synthesis under different growth conditions. A simple model of proteomic resource allocation can quantitatively account for all of the observed behaviours, and accurately predict responses to new perturbations. The key hypothesis of the model, that the proteome cost of energy biogenesis by respiration exceeds that by fermentation, is quantitatively confirmed by direct measurement of protein abundances via quantitative mass spectrometry.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Basan, Markus -- Hui, Sheng -- Okano, Hiroyuki -- Zhang, Zhongge -- Shen, Yang -- Williamson, James R -- Hwa, Terence -- R01-GM109069/GM/NIGMS NIH HHS/ -- England -- Nature. 2015 Dec 3;528(7580):99-104. doi: 10.1038/nature15765.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Physics, University of California at San Diego, La Jolla, California 92093-0374, USA. ; Institute of Molecular Systems Biology, ETH Zurich, 8093 Zurich, Switzerland. ; Section of Molecular Biology, Division of Biological Sciences, University of California at San Diego, La Jolla, California 92093, USA. ; Department of Integrative Structural and Computational Biology, Department of Chemistry, The Skaggs Institute for Chemical Biology, The Scripps Research Institute, La Jolla, California 92037, USA. ; Institute for Theoretical Studies, ETH Zurich, 8092 Zurich, Switzerland.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26632588" target="_blank"〉PubMed〈/a〉
    Keywords: Acetic Acid/metabolism ; Biomass ; Cell Respiration ; Energy Metabolism ; Escherichia coli/growth & development/*metabolism ; Escherichia coli Proteins/*metabolism ; Fermentation ; Mass Spectrometry ; Models, Biological ; Neoplasms/metabolism/pathology ; Oxygen/metabolism ; Proteome/*metabolism ; Proteomics
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  • 81
    Publication Date: 2011-07-29
    Description: Overfishing of large-bodied benthic fishes and their subsequent population collapses on the Scotian Shelf of Canada's east coast and elsewhere resulted in restructuring of entire food webs now dominated by planktivorous, forage fish species and macroinvertebrates. Despite the imposition of strict management measures in force since the early 1990s, the Scotian Shelf ecosystem has not reverted back to its former structure. Here we provide evidence of the transient nature of this ecosystem and its current return path towards benthic fish species domination. The prolonged duration of the altered food web, and its current recovery, was and is being governed by the oscillatory, runaway consumption dynamics of the forage fish complex. These erupting forage species, which reached biomass levels 900% greater than those prevalent during the pre-collapse years of large benthic predators, are now in decline, having outstripped their zooplankton food supply. This dampening, and the associated reduction in the intensity of predation, was accompanied by lagged increases in species abundances at both lower and higher trophic levels, first witnessed in zooplankton and then in large-bodied predators, all consistent with a return towards the earlier ecosystem structure. We conclude that the reversibility of perturbed ecosystems can occur and that this bodes well for other collapsed fisheries.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Frank, Kenneth T -- Petrie, Brian -- Fisher, Jonathan A D -- Leggett, William C -- England -- Nature. 2011 Jul 27;477(7362):86-9. doi: 10.1038/nature10285.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Ocean Sciences Division, Bedford Institute of Oceanography, P.O. Box 1006, Dartmouth, Nova Scotia B2Y 4A2, Canada. kenneth.frank@dfo-mpo.gc.ca〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/21796120" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Aquatic Organisms/*physiology ; Atlantic Ocean ; Biomass ; *Ecosystem ; Fisheries ; Fishes/*physiology ; Population Density ; Time Factors ; Zooplankton/physiology
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  • 82
    Publication Date: 2010-07-03
    Description: Terrestrial ecosystems gain carbon through photosynthesis and lose it mostly in the form of carbon dioxide (CO(2)). The extent to which the biosphere can act as a buffer against rising atmospheric CO(2) concentration in global climate change projections remains uncertain at the present stage. Biogeochemical theory predicts that soil nitrogen (N) scarcity may limit natural ecosystem response to elevated CO(2) concentration, diminishing the CO(2)-fertilization effect on terrestrial plant productivity in unmanaged ecosystems. Recent models have incorporated such carbon-nitrogen interactions and suggest that anthropogenic N sources could help sustain the future CO(2)-fertilization effect. However, conclusive demonstration that added N enhances plant productivity in response to CO(2)-fertilization in natural ecosystems remains elusive. Here we manipulated atmospheric CO(2) concentration and soil N availability in a herbaceous brackish wetland where plant community composition is dominated by a C(3) sedge and C(4) grasses, and is capable of responding rapidly to environmental change. We found that N addition enhanced the CO(2)-stimulation of plant productivity in the first year of a multi-year experiment, indicating N-limitation of the CO(2) response. But we also found that N addition strongly promotes the encroachment of C(4) plant species that respond less strongly to elevated CO(2) concentrations. Overall, we found that the observed shift in the plant community composition ultimately suppresses the CO(2)-stimulation of plant productivity by the third and fourth years. Although extensive research has shown that global change factors such as elevated CO(2) concentrations and N pollution affect plant species differently and that they may drive plant community changes, we demonstrate that plant community shifts can act as a feedback effect that alters the whole ecosystem response to elevated CO(2) concentrations. Moreover, we suggest that trade-offs between the abilities of plant taxa to respond positively to different perturbations may constrain natural ecosystem response to global change.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Langley, J Adam -- Megonigal, J Patrick -- England -- Nature. 2010 Jul 1;466(7302):96-9. doi: 10.1038/nature09176.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Smithsonian Environmental Research Center, Edgewater, Maryland 21037, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/20596018" target="_blank"〉PubMed〈/a〉
    Keywords: Atmosphere/analysis/chemistry ; Biomass ; Carbon Dioxide/analysis/*metabolism ; *Ecosystem ; Human Activities ; Nitrogen/*metabolism ; Plant Development ; Plants/*metabolism ; Poaceae/growth & development/metabolism ; Rivers ; Soil/analysis ; Water/analysis ; Wetlands
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  • 83
    Publication Date: 2011-04-15
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Rykaczewski, Ryan R -- Dunne, John P -- England -- Nature. 2011 Apr 14;472(7342):E5-6; discussion E8-9. doi: 10.1038/nature09952.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉University Corporation for Atmospheric Research, Boulder, Colorado 80307-3000 USA. rrykacze@ucar.edu〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/21490624" target="_blank"〉PubMed〈/a〉
    Keywords: Aquatic Organisms/growth & development/isolation & purification/metabolism ; Bias (Epidemiology) ; Biomass ; Chlorophyll/*analysis ; Data Collection/methods ; Ecosystem ; Oceans and Seas ; Phytoplankton/growth & development/isolation & purification/metabolism ; Reproducibility of Results ; Seawater/analysis/*chemistry ; Time Factors
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  • 84
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    Nature Publishing Group (NPG)
    Publication Date: 2011-08-19
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Cardinale, Massimiliano -- England -- Nature. 2011 Aug 17;476(7360):282. doi: 10.1038/476282a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/21850089" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Biomass ; Conservation of Natural Resources/*statistics & numerical data ; Europe ; Fisheries/*statistics & numerical data ; Fishes/*growth & development ; Population Density
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  • 85
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    Nature Publishing Group (NPG)
    Publication Date: 2011-06-24
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Savage, Neil -- England -- Nature. 2011 Jun 22;474(7352):S9-11. doi: 10.1038/474S09a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/21697843" target="_blank"〉PubMed〈/a〉
    Keywords: Alkanes/metabolism ; *Biofuels/analysis/economics/supply & distribution ; Biomass ; Butanols/chemistry/metabolism/supply & distribution ; Conservation of Energy Resources/trends ; Gasoline/analysis/economics
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  • 86
    Publication Date: 2011-08-26
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Mayfield, Stephen -- Wong, P K -- England -- Nature. 2011 Aug 24;476(7361):402-3. doi: 10.1038/476402a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/21866147" target="_blank"〉PubMed〈/a〉
    Keywords: *Biocatalysis ; Biochemical Processes ; Bioengineering/*methods ; Biofuels/*supply & distribution ; Biomass ; *Catalysis ; Chemical Engineering/*methods ; Conservation of Energy Resources/*methods ; Lignin/chemistry/metabolism ; Photosynthesis ; Saccharum/chemistry/metabolism ; Temperature ; Zea mays/chemistry/metabolism
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  • 87
    Publication Date: 2011-04-15
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉McQuatters-Gollop, Abigail -- Reid, Philip C -- Edwards, Martin -- Burkill, Peter H -- Castellani, Claudia -- Batten, Sonia -- Gieskes, Winfried -- Beare, Doug -- Bidigare, Robert R -- Head, Erica -- Johnson, Rod -- Kahru, Mati -- Koslow, J Anthony -- Pena, Angelica -- England -- Nature. 2011 Apr 14;472(7342):E6-7; discussion E8-9. doi: 10.1038/nature09950.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Sir Alister Hardy Foundation for Ocean Science, The Laboratory, Citadel Hill, Plymouth, PL1 2PB, UK. abiqua@sahfos.ac.uk〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/21490625" target="_blank"〉PubMed〈/a〉
    Keywords: Aquatic Organisms/growth & development/*isolation & purification/metabolism ; Atlantic Ocean ; Bias (Epidemiology) ; Biomass ; Chlorophyll/analysis ; Data Collection/methods ; *Ecosystem ; Fisheries ; Phytoplankton/growth & development/*isolation & purification/metabolism ; Reproducibility of Results ; Seawater/chemistry/microbiology ; Time Factors
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  • 88
    Publication Date: 2011-08-13
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Heimann, Martin -- England -- Nature. 2011 Aug 10;476(7359):157-8. doi: 10.1038/476157a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/21833078" target="_blank"〉PubMed〈/a〉
    Keywords: Agriculture/history/*statistics & numerical data ; Animals ; Antarctic Regions ; Atmosphere/*chemistry ; Biomass ; China ; Ethane/analysis ; Fires ; Fossil Fuels/history/*utilization ; Greenland ; History, 20th Century ; History, 21st Century ; Methane/*analysis/metabolism ; Microbial Consortia/physiology ; Oryza/metabolism
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  • 89
    Publication Date: 2011-08-05
    Description: Global warming is predicted to induce desiccation in many world regions through increases in evaporative demand. Rising CO(2) may counter that trend by improving plant water-use efficiency. However, it is not clear how important this CO(2)-enhanced water use efficiency might be in offsetting warming-induced desiccation because higher CO(2) also leads to higher plant biomass, and therefore greater transpirational surface. Furthermore, although warming is predicted to favour warm-season, C(4) grasses, rising CO(2) should favour C(3), or cool-season plants. Here we show in a semi-arid grassland that elevated CO(2) can completely reverse the desiccating effects of moderate warming. Although enrichment of air to 600 p.p.m.v. CO(2) increased soil water content (SWC), 1.5/3.0 degrees C day/night warming resulted in desiccation, such that combined CO(2) enrichment and warming had no effect on SWC relative to control plots. As predicted, elevated CO(2) favoured C(3) grasses and enhanced stand productivity, whereas warming favoured C(4) grasses. Combined warming and CO(2) enrichment stimulated above-ground growth of C(4) grasses in 2 of 3 years when soil moisture most limited plant productivity. The results indicate that in a warmer, CO(2)-enriched world, both SWC and productivity in semi-arid grasslands may be higher than previously expected.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Morgan, Jack A -- LeCain, Daniel R -- Pendall, Elise -- Blumenthal, Dana M -- Kimball, Bruce A -- Carrillo, Yolima -- Williams, David G -- Heisler-White, Jana -- Dijkstra, Feike A -- West, Mark -- England -- Nature. 2011 Aug 3;476(7359):202-5. doi: 10.1038/nature10274.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉USDA-ARS, Rangeland Resources Research Unit and Northern Plains Area, Fort Collins, Colorado 80526, USA. jack.morgan@ars.usda.gov〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/21814202" target="_blank"〉PubMed〈/a〉
    Keywords: Atmosphere/chemistry ; Biomass ; Carbon Dioxide/metabolism/*pharmacology ; Desert Climate ; *Desiccation ; *Ecosystem ; *Global Warming ; Photosynthesis/*drug effects/physiology ; Plant Stomata/metabolism ; Plant Transpiration ; Poaceae/*drug effects/*growth & development/metabolism ; Seasons ; Soil/chemistry ; Volatilization ; Water/analysis ; Wyoming
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  • 90
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    Nature Publishing Group (NPG)
    Publication Date: 2011-06-24
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Fairley, Peter -- England -- Nature. 2011 Jun 22;474(7352):S2-5. doi: 10.1038/474S02a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/21697838" target="_blank"〉PubMed〈/a〉
    Keywords: *Biofuels/economics/supply & distribution/utilization ; Biomass ; Conservation of Natural Resources/*methods/*trends ; Global Warming/prevention & control ; Waste Management/methods
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    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 91
    Publication Date: 2012-06-23
    Description: Ecosystem respiration is the biotic conversion of organic carbon to carbon dioxide by all of the organisms in an ecosystem, including both consumers and primary producers. Respiration exhibits an exponential temperature dependence at the subcellular and individual levels, but at the ecosystem level respiration can be modified by many variables including community abundance and biomass, which vary substantially among ecosystems. Despite its importance for predicting the responses of the biosphere to climate change, it is as yet unknown whether the temperature dependence of ecosystem respiration varies systematically between aquatic and terrestrial environments. Here we use the largest database of respiratory measurements yet compiled to show that the sensitivity of ecosystem respiration to seasonal changes in temperature is remarkably similar for diverse environments encompassing lakes, rivers, estuaries, the open ocean and forested and non-forested terrestrial ecosystems, with an average activation energy similar to that of the respiratory complex (approximately 0.65 electronvolts (eV)). By contrast, annual ecosystem respiration shows a substantially greater temperature dependence across aquatic (approximately 0.65 eV) versus terrestrial ecosystems (approximately 0.32 eV) that span broad geographic gradients in temperature. Using a model derived from metabolic theory, these findings can be reconciled by similarities in the biochemical kinetics of metabolism at the subcellular level, and fundamental differences in the importance of other variables besides temperature-such as primary productivity and allochthonous carbon inputs-on the structure of aquatic and terrestrial biota at the community level.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Yvon-Durocher, Gabriel -- Caffrey, Jane M -- Cescatti, Alessandro -- Dossena, Matteo -- del Giorgio, Paul -- Gasol, Josep M -- Montoya, Jose M -- Pumpanen, Jukka -- Staehr, Peter A -- Trimmer, Mark -- Woodward, Guy -- Allen, Andrew P -- England -- Nature. 2012 Jul 26;487(7408):472-6. doi: 10.1038/nature11205.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉School of Biological & Chemical Sciences, Queen Mary University of London, London E1 4NS, UK. g.yvon-durocher@exeter.ac.uk〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/22722862" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Biomass ; Biota ; Carbon/*metabolism ; Carbon Dioxide/*metabolism ; Cell Respiration ; Data Collection ; *Ecosystem ; *Global Warming ; Humans ; Kinetics ; Lakes ; Marine Biology ; *Oxygen Consumption ; Photosynthesis ; Rivers ; Seasons ; Seawater ; *Temperature ; Time Factors ; Trees/metabolism
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    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 92
    Publication Date: 2012-08-17
    Description: Water has always been crucial to combustion and hydroelectric processes, but it could become the source of power in membrane-based systems that capture energy from natural and waste waters. Two processes are emerging as sustainable methods for capturing energy from sea water: pressure-retarded osmosis and reverse electrodialysis. These processes can also capture energy from waste heat by generating artificial salinity gradients using synthetic solutions, such as thermolytic salts. A further source of energy comes from organic matter in waste waters, which can be harnessed using microbial fuel-cell technology, allowing both wastewater treatment and power production.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Logan, Bruce E -- Elimelech, Menachem -- England -- Nature. 2012 Aug 16;488(7411):313-9. doi: 10.1038/nature11477.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Civil and Environmental Engineering, The Pennsylvania State University, University Park, Pennsylvania 16802, USA. blogan@psu.edu〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/22895336" target="_blank"〉PubMed〈/a〉
    Keywords: Biofuels ; Biomass ; Dialysis/*methods ; Electricity ; Hot Temperature ; *Renewable Energy/economics ; Salinity ; *Water
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    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 93
    Publication Date: 2012-09-22
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Glover, Jerry D -- Reganold, John P -- Cox, Cindy M -- England -- Nature. 2012 Sep 20;489(7416):359-61. doi: 10.1038/489359a.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉USAID Bureau for Food Security, Washington DC 20523, USA. jglover@usaid.gov〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/22996532" target="_blank"〉PubMed〈/a〉
    Keywords: Africa ; Agriculture/*methods ; Animals ; Biomass ; Crops, Agricultural/*growth & development/metabolism ; Fabaceae/growth & development/metabolism ; Food Supply/*statistics & numerical data ; Global Warming ; Livestock/metabolism ; *Plant Development ; Plants/metabolism ; Population Growth ; Soil/*chemistry
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    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 94
    Publication Date: 2012-11-23
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Goodman, Rosa C -- Phillips, Oliver L -- Baker, Timothy R -- England -- Nature. 2012 Nov 22;491(7425):527. doi: 10.1038/491527b.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/23172205" target="_blank"〉PubMed〈/a〉
    Keywords: Biomass ; Body Size ; Carbon/*metabolism ; *Ecosystem ; Trees/*anatomy & histology/classification/growth & development/*metabolism ; *Tropical Climate ; Wood/analysis
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    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 95
    Publication Date: 2012-08-31
    Description: The future trajectory of greenhouse gas concentrations depends on interactions between climate and the biogeosphere. Thawing of Arctic permafrost could release significant amounts of carbon into the atmosphere in this century. Ancient Ice Complex deposits outcropping along the ~7,000-kilometre-long coastline of the East Siberian Arctic Shelf (ESAS), and associated shallow subsea permafrost, are two large pools of permafrost carbon, yet their vulnerabilities towards thawing and decomposition are largely unknown. Recent Arctic warming is stronger than has been predicted by several degrees, and is particularly pronounced over the coastal ESAS region. There is thus a pressing need to improve our understanding of the links between permafrost carbon and climate in this relatively inaccessible region. Here we show that extensive release of carbon from these Ice Complex deposits dominates (57 +/- 2 per cent) the sedimentary carbon budget of the ESAS, the world's largest continental shelf, overwhelming the marine and topsoil terrestrial components. Inverse modelling of the dual-carbon isotope composition of organic carbon accumulating in ESAS surface sediments, using Monte Carlo simulations to account for uncertainties, suggests that 44 +/- 10 teragrams of old carbon is activated annually from Ice Complex permafrost, an order of magnitude more than has been suggested by previous studies. We estimate that about two-thirds (66 +/- 16 per cent) of this old carbon escapes to the atmosphere as carbon dioxide, with the remainder being re-buried in shelf sediments. Thermal collapse and erosion of these carbon-rich Pleistocene coastline and seafloor deposits may accelerate with Arctic amplification of climate warming.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Vonk, J E -- Sanchez-Garcia, L -- van Dongen, B E -- Alling, V -- Kosmach, D -- Charkin, A -- Semiletov, I P -- Dudarev, O V -- Shakhova, N -- Roos, P -- Eglinton, T I -- Andersson, A -- Gustafsson, O -- England -- Nature. 2012 Sep 6;489(7414):137-40. doi: 10.1038/nature11392.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Applied Environmental Science (ITM) and the Bert Bolin Centre for Climate Research, Stockholm University, SE-11418, Stockholm, Sweden.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/22932271" target="_blank"〉PubMed〈/a〉
    Keywords: Alkanes/analysis ; Arctic Regions ; Atmosphere/chemistry ; Bacteria/chemistry ; Biomass ; Carbon/*analysis ; Carbon Dioxide/analysis ; *Freezing ; Geography ; Geologic Sediments/*chemistry ; Global Warming/statistics & numerical data ; Greenhouse Effect/statistics & numerical data ; Ice/analysis ; Oceans and Seas ; Seawater/chemistry ; Siberia ; Soil/*chemistry
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    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 96
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    Nature Publishing Group (NPG)
    Publication Date: 2013-01-04
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Dixon, Richard A -- England -- Nature. 2013 Jan 3;493(7430):36-7. doi: 10.1038/493036a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/23282361" target="_blank"〉PubMed〈/a〉
    Keywords: Bacteria/*enzymology ; Biofuels/microbiology ; Biomass ; Cell Wall/*chemistry/*metabolism ; Fungi/*enzymology ; Plant Cells/chemistry/*metabolism
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  • 97
    Publication Date: 2013-05-03
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Zhang, Fusuo -- Chen, Xinping -- Vitousek, Peter -- England -- Nature. 2013 May 2;497(7447):33-5. doi: 10.1038/497033a.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Center for Resources, Environment and Food Security, China Agricultural University, Beijing, China. zhangfs@cau.edu.cn〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/23636381" target="_blank"〉PubMed〈/a〉
    Keywords: Agriculture/economics/methods/*statistics & numerical data/*trends ; Biomass ; China ; Crops, Agricultural/metabolism/radiation effects ; Ecosystem ; Fertilizers/adverse effects/utilization ; Food Supply/economics/*methods/*statistics & numerical data ; Food, Genetically Modified ; Models, Biological ; Plants, Genetically Modified ; Research/economics ; Soil/analysis/chemistry ; Sunlight ; Water Supply/statistics & numerical data
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  • 98
    Publication Date: 2013-06-14
    Description: Scientific ocean drilling has revealed a deep biosphere of widespread microbial life in sub-seafloor sediment. Microbial metabolism in the marine subsurface probably has an important role in global biogeochemical cycles, but deep biosphere activities are not well understood. Here we describe and analyse the first sub-seafloor metatranscriptomes from anaerobic Peru Margin sediment up to 159 metres below the sea floor, represented by over 1 billion complementary DNA (cDNA) sequence reads. Anaerobic metabolism of amino acids, carbohydrates and lipids seem to be the dominant metabolic processes, and profiles of dissimilatory sulfite reductase (dsr) transcripts are consistent with pore-water sulphate concentration profiles. Moreover, transcripts involved in cell division increase as a function of microbial cell concentration, indicating that increases in sub-seafloor microbial abundance are a function of cell division across all three domains of life. These data support calculations and models of sub-seafloor microbial metabolism and represent the first holistic picture of deep biosphere activities.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Orsi, William D -- Edgcomb, Virginia P -- Christman, Glenn D -- Biddle, Jennifer F -- England -- Nature. 2013 Jul 11;499(7457):205-8. doi: 10.1038/nature12230. Epub 2013 Jun 12.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Geology and Geophysics, Woods Hole Oceanographic Institution, Woods Hole, Massachusetts 02543, USA. william.orsi@gmail.com〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/23760485" target="_blank"〉PubMed〈/a〉
    Keywords: Anaerobiosis ; Biomass ; Cell Division/genetics ; Colony Count, Microbial ; DNA Repair/genetics ; DNA, Complementary/analysis/genetics ; Gene Expression Profiling ; Gene Expression Regulation, Bacterial ; Gene Expression Regulation, Fungal ; Geologic Sediments/*microbiology ; Metabolic Networks and Pathways/genetics ; Oceans and Seas ; Seawater/microbiology ; Sequence Analysis, DNA ; Sulfates/metabolism ; Transcriptome/*genetics ; Water Microbiology
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  • 99
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    Unknown
    Nature Publishing Group (NPG)
    Publication Date: 2013-04-20
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Tollefson, Jeff -- England -- Nature. 2013 Apr 18;496(7445):286-9. doi: 10.1038/496286a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/23598321" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Biodiversity ; Biomass ; Brazil ; Ecology/history ; *Ecosystem ; History, 20th Century ; History, 21st Century ; Time Factors ; Trees/*physiology ; *Tropical Climate
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    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 100
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    Unknown
    Nature Publishing Group (NPG)
    Publication Date: 2013-03-08
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Schiermeier, Quirin -- England -- Nature. 2013 Mar 7;495(7439):15. doi: 10.1038/495015a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/23467142" target="_blank"〉PubMed〈/a〉
    Keywords: Atmosphere/analysis/chemistry ; Biomass ; Carbon Dioxide/metabolism ; Climate Change/*statistics & numerical data ; *Earth (Planet) ; Environmental Monitoring/economics/*instrumentation ; Europe ; Snow ; Space Flight ; *Spacecraft ; Temperature ; Trees/metabolism
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    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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