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  • 1
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    Evaluating learning spaces in flood risk management in Germany: Lessons for governance research (2021)
    Blackwell Publishing Ltd | Oxford, UK
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    Publication Date: 2021-06-28
    Description: Efforts to collaboratively manage the risk of flooding are ultimately based on individuals learning about risks, the decision process, and the effectiveness of decisions made in prior situations. This article argues that much can be learned about a governance setting by explicitly evaluating the relationships through which influential individuals and their immediate contacts receive and send information to one another. We define these individuals as “brokers,” and the networks that emerge from their interactions as “learning spaces.” The aim of this article is to develop strategies to identify and evaluate the properties of a broker's learning space that are indicative of a collaborative flood risk management arrangement. The first part of this article introduces a set of indicators, and presents strategies to employ this list so as to systematically identify brokers, and compare their learning spaces. The second part outlines the lessons from an evaluation that explored cases in two distinct flood risk management settings in Germany. The results show differences in the observed brokers' learning spaces. The contacts and interactions of the broker in Baden‐Württemberg imply a collaborative setting. In contrast, learning space of the broker in North Rhine‐Westphalia lacks the same level of diversity and polycentricity.
    Description: Deutsche Forschungsgemeinschaft http://dx.doi.org/10.13039/501100001659
    Description: MWK Baden‐Württemberg
    Keywords: 333.91 ; brokerage ; collaborative water governance ; comanagement ; comparative analysis ; social networks
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  • 2
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    Synthetic resampling strategies and machine learning for digital soil mapping in Iran (2021)
    Blackwell Publishing Ltd | Oxford, UK
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    Publication Date: 2021-07-04
    Description: Most common machine learning (ML) algorithms usually work well on balanced training sets, that is, datasets in which all classes are approximately represented equally. Otherwise, the accuracy estimates may be unreliable and classes with only a few values are often misclassified or neglected. This is known as a class imbalance problem in machine learning and datasets that do not meet this criterion are referred to as imbalanced data. Most datasets of soil classes are, therefore, imbalanced data. One of our main objectives is to compare eight resampling strategies that have been developed to counteract the imbalanced data problem. We compared the performance of five of the most common ML algorithms with the resampling approaches. The highest increase in prediction accuracy was achieved with SMOTE (the synthetic minority oversampling technique). In comparison to the baseline prediction on the original dataset, we achieved an increase of about 10, 20 and 10% in the overall accuracy, kappa index and F‐score, respectively. Regarding the ML approaches, random forest (RF) showed the best performance with an overall accuracy, kappa index and F‐score of 66, 60 and 57%, respectively. Moreover, the combination of RF and SMOTE improved the accuracy of the individual soil classes, compared to RF trained on the original dataset and allowed better prediction of soil classes with a low number of samples in the corresponding soil profile database, in our case for Chernozems. Our results show that balancing existing soil legacy data using synthetic sampling strategies can significantly improve the prediction accuracy in digital soil mapping (DSM). Highlights Spatial distribution of soil classes in Iran can be predicted using machine learning (ML) algorithms. The synthetic minority oversampling technique overcomes the drawback of imbalanced and highly biased soil legacy data. When combining a random forest model with synthetic sampling strategies the prediction accuracy of the soil model improves significantly. The resulting new soil map of Iran has a much higher spatial resolution compared to existing maps and displays new soil classes that have not yet been mapped in Iran.
    Description: Alexander von Humboldt‐Stiftung http://dx.doi.org/10.13039/100005156
    Description: German Research Foundation http://dx.doi.org/10.13039/501100001659
    Description: Soil and Water Research Institute, Agricultural Research, Education and Extension Organization, Karaj, Iran
    Keywords: 631.4 ; covariates ; imbalanced data ; machine learning ; random forest ; soil legacy data
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  • 3
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    Impact of biochar on nutrient supply, crop yield and microbial respiration on sandy soils of northern Germany (2021)
    Blackwell Publishing Ltd | Oxford, UK
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    Publication Date: 2021-06-16
    Description: The application of biochar to agricultural soils to increase nutrient availability, crop production and carbon sequestration has gained increasing interest but data from field experiments on temperate, marginal soils are still under‐represented. In the current study, biochar, produced from organic residues (digestates) from a biogas plant, was applied with and without digestates at low (3.4 t ha−1) and intermediate (17.1 t ha−1) rates to two acidic and sandy soils in northern Germany that are used for corn (Zea mays L.) production. Soil nutrient availability, crop yields, microbial biomass and carbon dioxide (CO2) emissions from heterotrophic respiration were measured over two consecutive years. The effects of biochar application depended on the intrinsic properties of the two tested soils and the biochar application rates. Although the soils at the fallow site, with initially low nutrient concentrations, showed a significant increase in pH, soil nutrients and crop yield after low biochar application rates, a similar response was found at the cornfield site only after application of substantially larger amounts of biochar. The effect of a single dose of biochar at the beginning of the experiment diminished over time but was still detectable after 2 years. Whereas plant available nutrient concentrations increased after biochar application, the availability of potentially phytotoxic trace elements (Zn, Pb, Cd, Cr) decreased significantly, and although slight increases in microbial biomass carbon and heterotrophic CO2 fluxes were observed after biochar application, they were mostly not significant. The results indicate that the application of relatively small amounts of biochar could have positive effects on plant available nutrients and crop yields of marginal arable soils and may decrease the need for mineral fertilizers while simultaneously increasing the sequestration of soil organic carbon. Highlights A low rate of biochar increased plant available nutrients and crop yield on marginal soils. Biochar application reduced the availability of potentially harmful trace elements. Heterotrophic respiration showed no clear response to biochar application. Biochar application may reduce fertilizer need and increase carbon sequestration on marginal soils.
    Description: German Academic Exchange Service http://dx.doi.org/10.13039/501100001655
    Description: Institute Strategic Programme grants, “Soils to Nutrition”
    Keywords: 631.4 ; black carbon ; carbon sequestration ; corn ; digestate ; heterotrophic respiration ; marginal soils ; microbial biomass
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  • 4
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    Self‐stated recovery from flooding: Empirical results from a survey in Central Vietnam (2021)
    Blackwell Publishing Ltd | Oxford, UK
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    Publication Date: 2021-06-27
    Description: Social inequalities lead to flood resilience inequalities across social groups, a topic that requires improved documentation and understanding. The objective of this paper is to attend to these differences by investigating self‐stated flood recovery across genders in Vietnam as a conceptual replication of earlier results from Germany. This study employs a regression‐based analysis of 1,010 respondents divided between a rural coastal and an urban community in Thua Thien‐Hue province. The results highlight an important set of recovery process‐related variables. The set of relevant variables is similar across genders in terms of inclusion and influence, and includes age, social capital, internal and external support after a flood, perceived severity of previous flood impacts, and the perception of stress‐resilience. However, women were affected more heavily by flooding in terms of longer recovery times, which should be accounted for in risk management. Overall, the studied variables perform similarly in Vietnam and Germany. This study, therefore, conceptually replicates previous results suggesting that women display slightly slower recovery levels as well as that psychological variables influence recovery rates more than adverse flood impacts. This provides an indication of the results' potentially robust nature due to the different socio‐environmental contexts in Germany and Vietnam.
    Keywords: 333.7 ; flood recovery ; resilience ; societal equity ; vulnerability
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  • 5
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    The potential of ryegrass as cover crop to reduce soil N2O emissions and increase the population size of denitrifying bacteria (2021)
    Blackwell Publishing Ltd | Oxford, UK
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    Publication Date: 2021-07-05
    Description: Nitrogen (N) fertilization is the major contributor to nitrous oxide (N2O) emissions from agricultural soil, especially in post‐harvest seasons. This study was carried out to investigate whether ryegrass serving as cover crop affects soil N2O emissions and denitrifier community size. A microcosm experiment was conducted with soil planted with perennial ryegrass (Lolium perenne L.) and bare soil, each with four levels of N fertilizer (0, 5, 10 and 20 g N m−2; applied as calcium ammonium nitrate). The closed‐chamber approach was used to measure soil N2O fluxes. Real‐time PCR was used to estimate the biomass of bacteria and fungi and the abundance of genes involved in denitrification in soil. The results showed that the presence of ryegrass decreased the nitrate content in soil. Cumulative N2O emissions of soil with grass were lower than in bare soil at 5 and 10 g N m−2. Fertilization levels did not affect the abundance of soil bacteria and fungi. Soil with grass showed greater abundances of bacteria and fungi, as well as microorganisms carrying narG, napA, nirK, nirS and nosZ clade I genes. It is concluded that ryegrass serving as a cover crop holds the potential to mitigate soil N2O emissions in soils with moderate or high NO3− concentrations. This highlights the importance of cover crops for the reduction of N2O emissions from soil, particularly following N fertilization. Future research should explore the full potential of ryegrass to reduce soil N2O emissions under field conditions as well as in different soils. Highlights This study was to investigate whether ryegrass serving as cover crop affects soil N2O emissions and denitrifier community size; Plant reduced soil N substrates on one side, but their root exudates stimulated denitrification on the other side; N2O emissions were lower in soil with grass than bare soil at medium fertilizer levels, and growing grass stimulated the proliferation of almost all the denitrifying bacteria except nosZ clade II; Ryegrass serving as a cover crop holds the potential to mitigate soil N2O emissions.
    Description: China Scholarship Council http://dx.doi.org/10.13039/501100004543
    Description: The National Science Project for University of Anhui Province
    Keywords: 551.9 ; 631.4 ; denitrification ; perennial ryegrass (Lolium perenne L.) ; soil bacteria ; soil CO2 emissions ; soil N2O emissions
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  • 6
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    ogs5py: A Python‐API for the OpenGeoSys 5 Scientific Modeling Package (2021)
    Blackwell Publishing Ltd | Malden, US
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    Publication Date: 2021-07-04
    Description: High‐performance numerical codes are an indispensable tool for hydrogeologists when modeling subsurface flow and transport systems. But as they are written in compiled languages, like C/C++ or Fortran, established software packages are rarely user‐friendly, limiting a wider adoption of such tools. OpenGeoSys (OGS), an open‐source, finite‐element solver for thermo‐hydro‐mechanical–chemical processes in porous and fractured media, is no exception. Graphical user interfaces may increase usability, but do so at a dramatic reduction of flexibility and are difficult or impossible to integrate into a larger workflow. Python offers an optimal trade‐off between these goals by providing a highly flexible, yet comparatively user‐friendly environment for software applications. Hence, we introduce ogs5py, a Python‐API for the OpenGeoSys 5 scientific modeling package. It provides a fully Python‐based representation of an OGS project, a large array of convenience functions for users to interact with OGS and connects OGS to the scientific and computational environment of Python.
    Description: German Federal Environmental Foundation http://dx.doi.org/10.13039/100007636
    Description: Deutsche Forschungsgemeinschaft http://dx.doi.org/10.13039/501100001659
    Keywords: 551.49 ; hydrogeology ; subsurface flow ; modeling ; software
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  • 7
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    High‐Resolution Integrated Transport Model for Studying Surface Water–Groundwater Interaction (2021)
    Blackwell Publishing Ltd | Malden, US
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    Publication Date: 2021-06-27
    Description: Transport processes that lead to exchange of mass between surface water and groundwater play a significant role for the ecological functioning of aquatic systems, for hydrological processes and for biogeochemical transformations. In this study, we present a novel integral modeling approach for flow and transport at the sediment–water interface. The model allows us to simultaneously simulate turbulent surface and subsurface flow and transport with the same conceptual approach. For this purpose, a conservative transport equation was implemented to an existing approach that uses an extended version of the Navier–Stokes equations. Based on previous flume studies which investigated the spreading of a dye tracer under neutral, losing and gaining flow conditions the new solver is validated. Tracer distributions of the experiments are in close agreement with the simulations. The simulated flow paths are significantly affected by in‐ and outflowing groundwater flow. The highest velocities within the sediment are found for losing condition, which leads to shorter residence times compared to neutral and gaining conditions. The largest extent of the hyporheic exchange flow is observed under neutral condition. The new solver can be used for further examinations of cases that are not suitable for the conventional coupled models, for example, if Reynolds numbers are larger than 10. Moreover, results gained with the integral solver provide high‐resolution information on pressure and velocity distributions at the rippled streambed, which can be used to improve flow predictions. This includes the extent of hyporheic exchange under varying ambient groundwater flow conditions.
    Description: Technische Universität Berlin, Germany
    Description: German Research Foundation http://dx.doi.org/10.13039/501100001659
    Keywords: 551.4 ; aquatic systems ; sediment-water interface ; transport model
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  • 8
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    Iron isotope fractionation in soil and graminaceous crops after 100 years of liming in the long‐term agricultural experimental site at Berlin‐Dahlem, Germany (2021)
    Blackwell Publishing Ltd | Oxford, UK
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    Publication Date: 2021-07-05
    Description: Sustainable arable cropping relies on repeated liming. Yet, the associated increase in soil pH can reduce the availability of iron (Fe) to plants. We hypothesized that repeated liming, but not pedogenic processes such as lessivage (i.e., translocation of clay particles), alters the Fe cycle in Luvisol soil, thereby affecting Fe isotope composition in soils and crops. Hence, we analysed Fe concentrations and isotope compositions in soil profiles and winter rye from the long‐term agricultural experimental site in Berlin‐Dahlem, Germany, where a controlled liming trial with three field replicates per treatment has been conducted on Albic Luvisols since 1923. Heterogeneity in subsoil was observed at this site for Fe concentration but not for Fe isotope composition. Lessivage had not affected Fe isotope composition in the soil profiles. The results also showed that almost 100 years of liming lowered the concentration of the HCl‐extractable Fe that was potentially available for plant uptake in the surface soil (0–15 cm) from 1.03 (standard error (SE) 0.03) to 0.94 (SE 0.01) g kg−1. This HCl‐extractable Fe pool contained isotopically lighter Fe (δ56Fe = −0.05 to −0.29‰) than the bulk soil (δ56Fe = −0.08 to 0.08‰). However, its Fe isotope composition was not altered by the long‐term lime application. Liming resulted in relatively lower Fe concentrations in the roots of winter rye. In addition, liming led to a heavier Fe isotope composition of the whole plants compared with those grown in the non‐limed plots (δ56FeWholePlant_ + Lime = −0.12‰, SE 0.03 vs. δ56FeWholePlant_‐Lime = −0.21‰, SE 0.01). This suggests that the elevated soil pH (increased by one unit due to liming) promoted the Fe uptake strategy through complexation of Fe(III) from the rhizosphere, which favoured heavier Fe isotopes. Overall, the present study showed that liming and a related increase in pH did not affect the Fe isotope compositions of the soil, but may influence the Fe isotope composition of plants grown in the soil if they alter their Fe uptake strategy upon the change of Fe availability. Highlights Fe concentrations and stocks, but not Fe isotope compositions, were more heterogeneous in subsoil than in topsoil. Translocation of clay minerals did not result in Fe isotope fractionation in the soil profile of a Luvisol. Liming decreased Fe availability in topsoil, but did not affect its δ56Fe values. Uptake of heavier Fe isotopes by graminaceous crops was more pronounced at elevated pH.
    Description: Bundesministerium für Bildung und Forschung http://dx.doi.org/10.13039/501100002347
    Keywords: 551.9 ; liming ; plant‐available Fe pool in soil ; winter rye ; δ56Fe
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  • 9
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    How to Find Aquifer Statistics Utilizing Pumping Tests? Two Field Studies Using welltestpy (2021)
    Blackwell Publishing Ltd | Malden, US
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    Publication Date: 2022-04-01
    Description: We present a workflow to estimate geostatistical aquifer parameters from pumping test data using the Python package welltestpy. The procedure of pumping test analysis is exemplified for two data sets from the Horkheimer Insel site and from the Lauswiesen site, Germany. The analysis is based on a semi‐analytical drawdown solution from the upscaling approach Radial Coarse Graining, which enables to infer log‐transmissivity variance and horizontal correlation length, beside mean transmissivity, and storativity, from pumping test data. We estimate these parameters of aquifer heterogeneity from type‐curve analysis and determine their sensitivity. This procedure, implemented in welltestpy, is a template for analyzing any pumping test. It goes beyond the possibilities of standard methods, for example, based on Theis' equation, which are limited to mean transmissivity and storativity. A sensitivity study showed the impact of observation well positions on the parameter estimation quality. The insights of this study help to optimize future test setups for geostatistical aquifer analysis and provides guidance for investigating pumping tests with regard to aquifer statistics using the open‐source software package welltestpy.
    Description: Article impact statement: We present a workflow to infer parameters of subsurface heterogeneity from pumping test data exemplified at two sites using welltestpy.
    Description: German Federal Environmental Foundation (DBU) http://dx.doi.org/10.13039/100007636
    Keywords: ddc:551.49
    Language: English
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  • 10
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    Importance of sources of variability, scales and experimental design: A case study about the effects of biochar and slurry application on soil properties in agricultural silty loam soils (2021)
    Blackwell Publishing Ltd | Oxford, UK
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    Publication Date: 2022-04-01
    Description: In designed experiments, different sources of variability and an adequate scale of measurement need to be considered, but not all approaches in common usage are equally valid. In order to elucidate the importance of sources of variability and choice of scale, we conducted an experiment where the effects of biochar and slurry applications on soil properties related to soil fertility were studied for different designs: (a) for a field‐scale sampling design with either a model soil (without natural variability) as an internal control or with composited soils, (b) for a design with a focus on amendment variabilities, and (c) for three individual field‐scale designs with true field replication and a combined analysis representative of the population of loess‐derived soils. Three silty loam sites in Germany were sampled and the soil macroaggregates were crushed. For each design, six treatments (0, 0.15 and 0.30 g slurry‐N kg−1 with and without 30 g biochar kg−1) were applied before incubating the units under constant soil moisture conditions for 78 days. CO2 fluxes were monitored and soils were analysed for macroaggregate yields and associated organic carbon (C). Mixed‐effects models were used to describe the effects. For all soil properties, results for the loess sites differed with respect to significant contributions of fixed effects for at least one site, suggesting the need for a general inclusion of different sites. Analysis using a multilevel model allowed generalizations for loess soils to be made and showed that site:slurry:biochar and site:slurry interactions were not negligible for macroaggregate yields. The use of a model soil as an internal control enabled observation of variabilities other than those related to soils or amendments. Experiments incorporating natural variability in soils or amendments resulted in partially different outcomes, indicating the need to include all important sources of variability. Highlights Effects of biochar and slurry applications were studied for different designs and mixed‐effects models were used to describe the effects. Including an internal control allowed observation of, e.g., methodological and analytical variabilities. The results suggested the need for a general inclusion of different sites. Analysis using a multilevel model allowed generalizations for loess soils. The results indicated the need to include all important sources of variability.
    Keywords: ddc:631.4
    Language: English
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  • 11
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    Do tree species affect decadal changes in soil organic carbon and total nitrogen stocks in Danish common garden experiments? (2021)
    Blackwell Publishing Ltd | Oxford, UK
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    Publication Date: 2022-04-01
    Description: Temperate forest soils are often considered as an important sink for atmospheric carbon (C), thereby buffering anthropogenic CO2 emissions. However, the effect of tree species composition on the magnitude of this sink is unclear. We resampled a tree species common garden experiment (six sites) a decade after initial sampling to evaluate whether forest floor (FF) and topsoil organic carbon (Corg) and total nitrogen (Nt) stocks changed in dependence of tree species (Norway spruce—Picea abies L., European beech—Fagus sylvatica L., pedunculate oak—Quercus robur L., sycamore maple—Acer pseudoplatanus L., European ash—Fraxinus excelsior L. and small‐leaved lime—Tilia cordata L.). Two groups of species were identified in terms of Corg and Nt distribution: (1) Spruce with high Corg and Nt stocks in the FF developed as a mor humus layer which tended to have smaller Corg and Nt stocks and a wider Corg:Nt ratio in the mineral topsoil, and (2) the broadleaved species, of which ash and maple distinguished most clearly from spruce by very low Corg and Nt stocks in the FF developed as mull humus layer, had greater Corg and Nt stocks, and narrow Corg:Nt ratios in the mineral topsoil. Over 11 years, FF Corg and Nt stocks increased most under spruce, while small decreases in bulk mineral soil (esp. in 0–15 cm and 0–30 cm depth) Corg and Nt stocks dominated irrespective of species. Observed decadal changes were associated with site‐related and tree species‐mediated soil properties in a way that hinted towards short‐term accumulation and mineralisation dynamics of easily available organic substances. We found no indication for Corg stabilisation. However, results indicated increasing Nt stabilisation with increasing biomass of burrowing earthworms, which were highest under ash, lime and maple and lowest under spruce. Highlights We studied if tree species differences in topsoil Corg and Nt stocks substantiate after a decade. The study is unique in its repeated soil sampling in a multisite common garden experiment. Forest floors increased under spruce, but topsoil stocks decreased irrespective of species. Changes were of short‐term nature. Nitrogen was most stable under arbuscular mycorrhizal species.
    Description: Deutsche Forschungsgemeinschaff (DFG)
    Keywords: ddc:551.9 ; ddc:631.41
    Language: English
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  • 12
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    The ‘Flood Resilience Rose’: A management tool to promote transformation towards flood resilience (2021)
    Blackwell Publishing Ltd | Oxford, UK
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    Publication Date: 2021-09-29
    Description: Coping with the growing impacts of flooding in EU countries, a paradigm shift in flood management can be observed, moving from safety‐based towards risk‐based approaches and holistic perspectives. Flood resilience is a common denominator of most of the approaches. In this article, we present the ‘Flood Resilience Rose’ (FRR), a management tool to promote harmonised action towards flood resilience in European regions and beyond. The FRR is a result of a two‐step process. First, based on scientific concepts as well as analysis of relevant policy documents, we identified three ‘levels of operation’. The first level refers to the EU Floods Directive and an extended multi‐layer safety approach, comprising the four different layers of protection, prevention, preparedness and recovery, and related measures to be taken. This level is not independent but depends both on the institutional (second level) and the wider (third level) context. Second, we used surveys, semi‐structured interviews and group discussions during workshops with experts from Belgium, Denmark, Germany, the Netherlands and the United Kingdom to validate the definitions and the FRR's practical relevance. The presented FRR is thus the result of rigorous theoretical and practical consideration and provides a tool capable to strengthen flood risk management practice.
    Description: European Regional Development Fund http://dx.doi.org/10.13039/501100008530
    Keywords: 551.48 ; flood defence measures ; governance and institutions ; integrated flood risk management ; resilience
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  • 13
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    Inspecting the Reliability of Geochemical Facies Identified for the Waterworks' Capture Zone in Germany (2022)
    Blackwell Publishing Ltd | Malden, US
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    Publication Date: 2022-09-27
    Description: Little research attention has been given to validating clusters obtained from the groundwater geochemistry of the waterworks' capture zone with a prevailing lake‐groundwater exchange. To address this knowledge gap, we proposed a new scheme whereby Gaussian finite mixture modeling (GFMM) and Spike‐and‐Slab Bayesian (SSB) algorithms were utilized to cluster the groundwater geochemistry while quantifying the probability of the resulting cluster membership against each other. We applied GFMM and SSB to 13 geochemical parameters collected during different sampling periods at 13 observation points across the Barnim Highlands plateau located in the northeast of Berlin, Germany; this included 10 observation wells, two lakes, and a gallery of drinking production wells. The cluster analysis of GFMM yielded nine clusters, either with a probability ≥0.8, while the SSB produced three hierarchical clusters with a probability of cluster membership varying from 〈0.2 to 〉0.8. The findings demonstrated that the clustering results of GFMM were in good agreement with the classification as per the principal component analysis and Piper diagram. By superimposing the parameter clustering onto the observation clustering, we could identify discrepancies that exist among the parameters of a certain cluster. This enables the identification of different factors that may control the geochemistry of a certain cluster, although parameters of that cluster share a strong similarity. The GFMM results have shown that from 2002, there has been active groundwater inflow from the lakes towards the capture zone. This means that it is necessary to adopt appropriate measures to reverse the inflow towards the lakes.
    Description: Article impact statement: The probability of cluster membership quantified using an algorithm should be validated against another probabilistic‐based classifier.
    Description: Federal Ministry of Education and Research http://dx.doi.org/10.13039/501100002347
    Keywords: ddc:551.9 ; ddc:551.49
    Language: English
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  • 14
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    Application of mixed‐effects modelling and rule‐based models to explain copper variation in soil profiles of southern Germany (2022)
    Blackwell Publishing Ltd | Oxford, UK
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    Publication Date: 2022-10-01
    Description: Copper (Cu) is an essential element for plants and microorganisms and at larger concentrations a toxic pollutant. A number of factors controlling Cu dynamics have been reported, but information on quantitative relationships is scarce. We aimed to (i) quantitatively describe and predict soil Cu concentrations (CuAR) in aqua regia considering site‐specific effects and effects of pH, soil organic carbon (SOC) and cation exchange capacity (CEC), and (ii) study the suitability of mixed‐effects modelling and rule‐based models for the analysis of long‐term soil monitoring data. Thirteen uncontaminated long‐term monitoring soil profiles in southern Germany were analysed. Since there was no measurable trend of increasing CuAR concentrations with time in the respective depth ranges of the sites, data from different sampling dates were combined and horizon‐specific regression analyses including model simplifications were carried out for 10 horizons. Fixed‐ and mixed‐effects models with the site as a random effect were useful for the different horizons and significant contributions (either of main effects or interactions) of SOC, CEC and pH were present for 9, 8 and 7 horizons, respectively. Horizon‐specific rule‐based cubist models described the CuAR data similarly well. Validations of cubist models and mixed‐effects models for the CuAR concentrations in A horizons were successful for the given population after random splitting into calibration and validation samples, but not after independent validations with random splitting according to sites. Overall, site, CEC, SOC and pH provide important information for a description of CuAR concentrations using the different regression approaches. Highlights: Information on quantitative relationships for factors controlling Cu dynamics is scarce. Site, CEC, SOC and pH provide important information for a description of Cu concentrations. Validations of cubist models and mixed‐effects models for A horizons were successful for a closed population of sites.
    Description: Bavarian State Ministry of the Environment and Consumer Protection http://dx.doi.org/10.13039/501100010219
    Description: Ministry of Agriculture and Environment Mecklenburg‐Western Pomerania
    Keywords: ddc:631.4
    Language: English
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  • 15
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    Urban pluvial flood adaptation: Results of a household survey across four German municipalities (2021)
    Blackwell Publishing Ltd | Oxford, UK
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    Publication Date: 2022-09-30
    Description: In recent years, German cities were heavily impacted by pluvial flooding and related damage is projected to increase due to climate change and urbanisation. It is important to ask how to improve urban pluvial flood risk management. To understand the current state of property level adaptation, a survey was conducted in four municipalities that had recently been impacted by pluvial flooding. A hybrid framework based on the Protection Motivation Theory (PMT) and the Protection Action Decision Model (PADM) was used to investigate drivers of adaptive behaviour through both descriptive and regression analyses. Descriptive statistics revealed that participants tended to instal more low‐ and medium‐cost measures than high‐cost measures. Regression analyses showed that coping appraisal increased protection motivation, but that the adaptive behaviour also depends on framing factors, particularly homeownership. We further found that, while threat appraisal solely affects protection motivation and responsibility appraisal affects solely maladaptive thinking, coping appraisal affects both. Our results indicate that PMT is a solid starting point to study adaptive behaviours in the context of pluvial flooding, but we need to go beyond that by, for instance, considering factors of the PADM, such as responsibility, ownership, or respondent age, to fully understand this complex decision‐making process.
    Description: Bundesministerium für Bildung und Forschung http://dx.doi.org/10.13039/501100002347
    Keywords: ddc:551.489 ; ddc:363.34
    Language: English
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  • 16
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    Millimetre scale aeration of the rhizosphere and drilosphere (2022)
    Blackwell Publishing Ltd | Oxford, UK
    Details
    Publication Date: 2022-10-04
    Description: Soil aeration is a critical factor for oxygen‐limited subsoil processes, as transport by diffusion and advection is restricted by the long distance to the free atmosphere. Oxygen transport into the soil matrix is highly dependent on its connectivity to larger pore channels like earthworm and root colonised biopores. Here we hypothesize that the soil matrix around biopores represents different connectivity depending on biopore genesis and actual coloniser. We analysed the soil pore system of undisturbed soil core samples around biopores generated or colonised by roots and earthworms and compared them with the pore system of soil, not in the immediacy of a biopore. Oxygen partial pressure profiles and gas relative diffusion was measured in the rhizosphere and drilosphere from the biopore wall into the bulk soil with microelectrodes. The measurements were linked with structural features such as porosity and connectivity obtained from X‐ray tomography and image analysis. Aeration was enhanced in the soil matrix surrounding biopores in comparison to the bulk soil, shown by higher oxygen concentrations and higher relative diffusion coefficients. Biopores colonised by roots presented more connected lateral pores than earthworm colonised ones, which resulted in enhanced aeration of the rhizosphere compared to the drilosphere. This has influenced biotic processes (microbial turnover/mineralization or root respiration) at biopore interfaces and highlights the importance of microstructural features for soil processes and their dependency on the biopore's coloniser.
    Description: Deutsche Forschungsgemeinschaft http://dx.doi.org/10.13039/501100001659
    Keywords: ddc:631.4
    Language: English
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  • 17
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    Response of subsoil organic matter contents and physical properties to long‐term, high‐rate farmyard manure application (2022)
    Blackwell Publishing Ltd | Oxford, UK
    Details
    Publication Date: 2022-07-26
    Description: Application of farmyard manure (FYM) is common practice to improve physical and chemical properties of arable soil and crop yields. However, studies on effects of FYM application mainly focussed on topsoils, whereas subsoils have rarely been addressed so far. We, therefore, investigated the effects of 36‐year FYM application with different rates of annual organic carbon (OC) addition (0, 469, 938 and 1875 g C m−2 a−1) on OC contents of a Chernozem in 0–30 cm (topsoil) and 35–45 cm (subsoil) depth. We also investigated its effects on soil structure and hydraulic properties in subsoil. X‐ray computed tomography was used to analyse the response of the subsoil macropore system (≥19 μm) and the distribution of particulate organic matter (POM) to different FYM applications, which were related to contents in total OC (TOC) and water‐extractable OC (WEOC). We show that FYM‐C application of 469 g C m−2 a−1 caused increases in TOC and WEOC contents only in the topsoil, whereas rates of ≥938 g C m−2 a−1 were necessary for TOC enrichment also in the subsoil. At this depth, the subdivision of TOC into different OC sources shows that most of the increase was due to fresh POM, likely by the stimulation of root growth and bioturbation. The increase in subsoil TOC went along with increases in macroporosity and macropore connectivity. We neither observed increases in plant‐available water capacity nor in unsaturated hydraulic conductivity. In conclusion, only very high application of FYM over long periods can increase OC content of subsoil at our study site, but this increase is largely based on fresh, easily degradable POM and likely accompanied by high C losses when considering the discrepancy between OC addition rate by FYM and TOC response in soil. Highlights A new image processing procedure to distinguish fresh and decomposed POM. The increase of subsoil C stock based to a large extend on fresh, labile POM. Potential of arable subsoils for long‐term C storage by large FYM application rates is limited. The increase in TOC has no effect on hydraulic properties of the subsoil.
    Description: Deutsche Forschungsgemeinschaft http://dx.doi.org/10.13039/501100001659
    Keywords: ddc:631.4
    Language: English
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    Non‐exchangeable stable hydrogen isotope ratios in clay minerals and soil clay fractions: A method test (2022)
    Blackwell Publishing Ltd | Oxford, UK
    Details
    Publication Date: 2023-01-20
    Description: Stable hydrogen isotope ratios (δ2H values) in structural hydroxyl groups of pedogenic clay minerals are inherited from the surrounding water at the time of their formation. Only non‐exchangeable H preserves the environmental forensic and paleoclimate information (δ2Hn value). To measure δ2Hn values in structural H of clay minerals and soil clay fractions, we adapted a steam equilibration method by accounting for high hygroscopicity. Our δ2Hn values for USGS57 biotite (−95.3 ± SD 0.9‰) and USGS58 muscovite (30.7 ± 1.4‰) differed slightly but significantly from the reported δ2H values (−91.5 ± 2.4‰ and −28.4 ± 1.6‰), because the minerals contained 1.1%–4.4% of exchangeable H. The low SD of replicate measurements (n = 3) confirmed a high precision. The clay separation method including destruction of Fe oxides, carbonates and soil organic matter, and dispersion did not significantly change the δ2Hn values of five different clay minerals. However, we were unable to remove all organic matter from the soil clay fractions resulting in an estimated bias of 1‰ in two samples and 15‰ in the carbon‐richest sample. Our results demonstrate that δ2Hn values of structural H of clay minerals and soil clay fractions can be reliably measured without interference from atmospheric water and the method used to separate the soil clay fraction. Highlights We tested steam equilibration to determine stable isotope ratios of structural H in clay. Gas‐tight capsule sealing in Ar atmosphere was necessary to avoid remoistening. Our steam equilibration method showed a high accuracy and precision. The clay separation method did not change stable isotope ratios of structural H in clay.
    Description: Deutsche Forschungsgemeinschaft http://dx.doi.org/10.13039/501100001659
    Keywords: ddc:549 ; controlled isotope exchange technique ; deuterium ; montmorillonite ; soil clay separation ; soil organic matter removal ; steam equilibration ; structural H ; USGS57 biotite ; vermiculite ; δ2H
    Language: English
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    Potential erodibility of semi‐arid steppe soils derived from aggregate stability tests (2022)
    Koza, Moritz ; Pöhlitz, Julia ; Prays, Aleksey ; [et al.]
    Blackwell Publishing Ltd | Oxford, UK
    Details
    Publication Date: 2023-01-26
    Description: Erosion is a severe threat to the sustainable use of agricultural soils. However, the structural resistance of soil against the disruptive forces steppe soils experience under field conditions has not been investigated. Therefore, 132 topsoils under grass‐ and cropland covering a large range of physico‐chemical soil properties (sand: 2–76%, silt: 18–80%, clay: 6–30%, organic carbon: 7.3–64.2 g kg−1, inorganic carbon: 0.0–8.5 g kg−1, pH: 4.8–9.5, electrical conductivity: 32–946 μS cm−1) from northern Kazakhstan were assessed for their potential erodibility using several tests. An adjusted drop‐shatter method (low energy input of 60 Joule on a 250‐cm3 soil block) was used to estimate the stability of dry soil against weak mechanical forces, such as saltating particles striking the surface causing wind erosion. Three wetting treatments with various conditions and energies (fast wetting, slow wetting, and wet shaking) were applied to simulate different disruptive effects of water. Results indicate that aggregate stability was higher for grassland than cropland soils and declined with decreasing soil organic carbon content. The results of the drop‐shatter test suggested that 29% of the soils under cropland were at risk of wind erosion, but only 6% were at high risk (i.e. erodible fraction 〉60%). In contrast, the fast wetting treatment revealed that 54% of the samples were prone to become “very unstable” and 44% “unstable” during heavy rain or snowmelt events. Even under conditions comparable to light rain events or raindrop impact, 53–59% of the samples were “unstable.” Overall, cropland soils under semi‐arid conditions seem much more susceptible to water than wind erosion. Considering future projections of increasing precipitation in Kazakhstan, we conclude that the risk of water erosion is potentially underestimated and needs to be taken into account when developing sustainable land use strategies. Highlights Organic matter is the important binding agent enhancing aggregation in steppe topsoils. Tillage always declines aggregate stability even without soil organic carbon changes. All croplands soil are prone to wind or water erosion independent of their soil properties. Despite the semi‐arid conditions, erosion risk by water seems higher than by wind.
    Description: Bundesministerium für Bildung und Forschung http://dx.doi.org/10.13039/501100002347
    Keywords: ddc:631.4 ; climate change ; land use ; soil organic carbon ; soil texture ; water erosion ; wind erosion
    Language: English
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  • 20
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    Vertical SOC distribution and aromatic carbon in centuries old charcoal‐rich Technosols (2022)
    Bonhage, Alexander ; Raab, Thomas ; Schneider, Anna ; [et al.]
    Blackwell Publishing Ltd | Oxford, UK
    Details
    Publication Date: 2023-01-21
    Description: Charcoal‐rich Technosols on century‐old relict charcoal hearths (RCHs) are the subject of ongoing research regarding potential legacy effects that result from historic charcoal production and subsequent charcoal amendments on forest soil properties and forest ecosystems today. RCHs consist mostly of Auh horizons that are substantially enriched in soil organic carbon (SOC), of which the largest part seems to be of pyrogenic origin (PyC). However, the reported range of SOC and PyC contents in RCH soil also suggests that they are enriched in nonpyrogenic SOC. RCH soils are discussed as potential benchmarks for the long‐term influence of biochar amendment and the post‐wildfire influences on soil properties. In this study, we utilised a large soil sample dataset (n = 1245) from 52 RCH sites in north‐western Connecticut, USA, to quantify SOC contents by total element analysis. The contents of condensed highly aromatic carbon as a proxy for black carbon (BC) were predicted by using a modified benzene polycarboxylated acid (BPCA) marker method in combination with diffuse reflectance infrared Fourier transform (DRIFT) spectroscopy‐based partial least square regression (r2 = 0.89). A high vertical spatial sampling resolution allowed the identification of soil organic matter (SOM) enrichment and translocation processes. The results show an average 75% and 1862% increase in TOC and BPCA‐derived carbon, respectively, for technogenic Auh horizons compared to reference soils. In addition to an increase in aromatic properties, increased carboxylic properties of the RCH SOC suggest self‐humification effects of degrading charcoal and thereby the continuing formation of leachable aromatic carbon compounds, which could have effects on pedogenic processes in buried soils. Indeed, we show BPCA‐derived carbon concentrations in intermediate technogenic Cu horizons and buried top/subsoils that suggest vertical translocation of highly aromatic carbon originating in RCH Auh horizons. Topmost Auh horizons showed a gradual decrease in total organic carbon (TOC) contents with increasing depth, suggesting accumulation of recent, non‐pyrogenic SOM. Lower aliphatic absorptions in RCH soil spectra suggest different SOM turnover dynamics compared to reference soils. Furthermore, studied RCH soils featured additional TOC enrichment, which cannot be fully explained now. Highlights BC to TOC ratio and high resolution vertical SOC distribution in 52 RCH sites were studied. RCH soils non‐BC pool was potentially different to reference soils. RCH soils feature TOC accumulation in the topmost horizon. There is BC translocation into buried soils on RCH sites.
    Description: Deutsche Forschungsgemeinschaft http://dx.doi.org/10.13039/501100001659
    Keywords: ddc:631.4 ; benzene polycarboxylated acid marker (BPCA) ; black carbon ; charcoal degradation ; charcoal kiln ; pyrogenic carbon ; relict charcoal hearth ; biochar
    Language: English
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  • 21
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    Defining Hydrogeological Site Similarity with Hierarchical Agglomerative Clustering (2022)
    Blackwell Publishing Ltd | Malden, US
    Details
    Publication Date: 2024-02-28
    Description: 〈title xmlns:mml="http://www.w3.org/1998/Math/MathML"〉Abstract〈/title〉〈p xmlns:mml="http://www.w3.org/1998/Math/MathML" xml:lang="en"〉Hydrogeological information about an aquifer is difficult and costly to obtain, yet essential for the efficient management of groundwater resources. Transferring information from sampled sites to a specific site of interest can provide information when site‐specific data is lacking. Central to this approach is the notion of site similarity, which is necessary for determining relevant sites to include in the data transfer process. In this paper, we present a data‐driven method for defining site similarity. We apply this method to selecting groups of similar sites from which to derive prior distributions for the Bayesian estimation of hydraulic conductivity measurements at sites of interest. We conclude that there is now a unique opportunity to combine hydrogeological expertise with data‐driven methods to improve the predictive ability of stochastic hydrogeological models.〈/p〉
    Description: 〈p xmlns:mml="http://www.w3.org/1998/Math/MathML" xml:lang="en"〉〈italic〉Article impact statement〈/italic〉: This article introduces hierarchical clustering as a method for defining a notion of site similarity; the aim of this method is to improve the derivation of prior distributions in Bayesian methods in hydrogeology.〈/p〉
    Description: Deutsche Forschungsgemeinschaft http://dx.doi.org/10.13039/501100001659
    Description: https://github.com/GeoStat-Bayesian/geostatDB
    Description: https://github.com/GeoStat-Bayesian/exPrior
    Description: https://github.com/GeoStat-Bayesian/siteSimilarity
    Keywords: ddc:551.49 ; hydrogeological sites ; hydrogeological modeling
    Language: English
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    Toward an adequate level of detail in flood risk assessments (2023)
    Blackwell Publishing Ltd | Oxford, UK
    Details
    Publication Date: 2024-01-24
    Description: 〈title xmlns:mml="http://www.w3.org/1998/Math/MathML"〉Abstract〈/title〉〈p xmlns:mml="http://www.w3.org/1998/Math/MathML" xml:lang="en"〉Flood risk assessments require different disciplines to understand and model the underlying components hazard, exposure, and vulnerability. Many methods and data sets have been refined considerably to cover more details of spatial, temporal, or process information. We compile case studies indicating that refined methods and data have a considerable effect on the overall assessment of flood risk. But are these improvements worth the effort? The adequate level of detail is typically unknown and prioritization of improvements in a specific component is hampered by the lack of an overarching view on flood risk. Consequently, creating the dilemma of potentially being too greedy or too wasteful with the resources available for a risk assessment. A “sweet spot” between those two would use methods and data sets that cover all relevant known processes without using resources inefficiently. We provide three key questions as a qualitative guidance toward this “sweet spot.” For quantitative decision support, more overarching case studies in various contexts are needed to reveal the sensitivity of the overall flood risk to individual components. This could also support the anticipation of unforeseen events like the flood event in Germany and Belgium in 2021 and increase the reliability of flood risk assessments.〈/p〉
    Description: Deutsche Forschungsgemeinschaft http://dx.doi.org/10.13039/501100001659
    Description: BMBF http://dx.doi.org/10.13039/501100002347
    Description: Federal Environment Agency http://dx.doi.org/10.13039/501100010809
    Description: http://howas21.gfz-potsdam.de/howas21/
    Description: https://www.umwelt.niedersachsen.de/startseite/themen/wasser/hochwasser_amp_kustenschutz/hochwasserrisikomanagement_richtlinie/hochwassergefahren_und_hochwasserrisikokarten/hochwasserkarten-121920.html
    Description: https://download.geofabrik.de/europe/germany.html
    Description: https://emergency.copernicus.eu/mapping/list-of-components/EMSN024
    Description: https://data.jrc.ec.europa.eu/collection/id-0054
    Description: https://oasishub.co/dataset/surface-water-flooding-footprinthurricane-harvey-august-2017-jba
    Description: https://www.wasser.sachsen.de/hochwassergefahrenkarte-11915.html
    Keywords: ddc:551.48 ; decision support ; extreme events ; integrated flood risk management ; risk assessment
    Language: English
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    Small lateral air pressure gradients generated by a large chamber system have a strong effect on CO2 transport in soil (2023)
    Blackwell Publishing Ltd | Oxford, UK
    Details
    Publication Date: 2024-02-09
    Description: 〈title xmlns:mml="http://www.w3.org/1998/Math/MathML"〉Abstract〈/title〉〈p xmlns:mml="http://www.w3.org/1998/Math/MathML" xml:lang="en"〉Gas transport in soils is usually assumed to be purely diffusive, although several studies have shown that non‐diffusive processes can significantly enhance soil gas transport. These processes include barometric air pressure changes, wind‐induced pressure pumping and static air pressure fields generated by wind interacting with obstacles. The associated pressure gradients in the soil can cause advective gas fluxes that are much larger than diffusive fluxes. However, the contributions of the respective transport processes are difficult to separate. We developed a large chamber system to simulate pressure fields and investigate their influence on soil gas transport. The chamber consists of four subspaces in which pressure is regulated by fans that blow air in or out of the chamber. With this setup, we conducted experiments with oscillating and static pressure fields. CO〈sub〉2〈/sub〉 concentrations were measured along two soil profiles beneath the chamber. We found a significant relationship between static lateral pressure gradients and the change in the CO〈sub〉2〈/sub〉 profiles (R〈sup〉2〈/sup〉 = 0.53; 〈italic toggle="no"〉p〈/italic〉‐value 〈2e‐16). Even small pressure gradients between −1 and 1 Pa relative to ambient pressure resulted in an increase or decrease in CO〈sub〉2〈/sub〉 concentrations of 8% on average in the upper soil, indicating advective flow of air in the pore space. Positive pressure gradients resulted in decreasing, negative pressure gradients in increasing CO〈sub〉2〈/sub〉 concentrations. The concentration changes were probably caused by an advective flow field in the soil beneath the chamber generated by the pressure gradients. No effect of oscillating pressure fields was observed in this study. The results indicate that static lateral pressure gradients have a substantial impact on soil gas transport and therefore are an important driver of gas exchange between soil and atmosphere. Lateral pressure gradients in a comparable range can be induced under windy conditions when wind interacts with terrain features. They can also be caused by chambers used for flux measurements at high wind speed or by fans used for head‐space mixing within the chambers, which yields biased flux estimates.〈/p〉
    Description: Deutsche Forschungsgemeinschaft http://dx.doi.org/10.13039/501100001659
    Keywords: ddc:631.4 ; advective flux ; chamber flux measurements ; static air pressure fields ; wind‐induced pressure pumping
    Language: English
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    Redoxtrons – An experimental system to study redox processes within the capillary fringe (2023)
    Blackwell Publishing Ltd | Oxford, UK
    Details
    Publication Date: 2023-11-18
    Description: Spatiotemporal characterisation of the soil redox status within the capillary fringe (CF) is a challenging task. Air‐filled porosities (ε), oxygen concentration (O〈sub〉2〈/sub〉) and soil redox potential (EH) are interrelated soil variables within active biogeochemical domains such as the CF. We investigated the impact of water table (WT) rise and drainage in an undisturbed topsoil and subsoil sample taken from a Calcaric Gleysol for a period of 46 days. We merged 1D (EH and matric potential) and 2D (O〈sub〉2〈/sub〉) systems to monitor at high spatiotemporal resolution redox dynamics within self‐constructed redoxtron housings and complemented the data set by a 3D pore network characterization using X‐ray microtomography (X‐ray μCT). Depletion of O〈sub〉2〈/sub〉 was faster in the organic matter‐ and clay‐rich aggregated topsoil and the CF extended 〉10 cm above the artificial WT. The homogeneous and less‐aggregated subsoil extended only 4 cm above the WT as indicated by ε–O〈sub〉2〈/sub〉–EH data during saturation. After drainage, 2D O〈sub〉2〈/sub〉 imaging revealed a fast aeration towards the lower depths of the topsoil, which agrees with the connected ε derived by X‐ray μCT (ε〈sub〉CT_conn〈/sub〉) of 14.9% of the total porosity. However, small‐scaled anoxic domains with O〈sub〉2〈/sub〉 saturation 〈5% were apparent even after lowering the WT (down to 0.25 cm〈sup〉2〈/sup〉 in size) for 23 days. These domains remained a nucleus for reducing soil conditions (E〈sub〉H〈/sub〉 〈 −100 mV), which made it challenging to characterise the soil redox status in the CF. In contrast, the subsoil aeration reached O〈sub〉2〈/sub〉 saturation after 8 days for the complete soil volume. Values of ε〈sub〉CT_conn〈/sub〉 around zero in the subsoil highlighted that soil aeration was independent of this parameter suggesting that other variables such as microbial activity must be considered when predicting the soil redox status from ε alone. The use of redoxtrons in combination with localised redox‐measurements and image based pore space analysis resulted in a better 2D/3D characterisation of the pore system and related O〈sub〉2〈/sub〉 transport properties. This allowed us to analyse the distribution and activity of microbiological niches highly associated with the spatiotemporal variable redox dynamics in soil environments. Highlights: The time needed to turn from reducing to oxidising (period where all platinum electrodes feature E〈sub〉H〈/sub〉 〉 300 mV) condition differ for two samples with contrasting soil structure. The subsoil with presumably low O〈sub〉2〈/sub〉 consumption rates aerated considerably faster than the topsoil and exclusively by O〈sub〉2〈/sub〉 diffusion through medium‐ and fine‐sized pores. To derive the soil redox status based upon the triplet ε–O〈sub〉2〈/sub〉–E〈sub〉H〈/sub〉 is challenging at present in heterogeneous soil domains and larger soil volumes than 250 cm〈sup〉3〈/sup〉. Undisturbed soil sampling along with 2D/3D redox measurement systems (e.g., redoxtrons) improve our understanding of redox dynamics within the capillary fringe.
    Keywords: ddc:631.4 ; environmental monitoring ; incubation experiments ; redox processes ; soil reducing conditions ; undisturbed soil ; X‐ray microtomography
    Language: English
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    The dilemma of analytical method changes for soil organic carbon in long‐term experiments (2023)
    Blackwell Publishing Ltd | Oxford, UK
    Details
    Publication Date: 2023-11-17
    Description: 〈title xmlns:mml="http://www.w3.org/1998/Math/MathML"〉Abstract〈/title〉〈sec xmlns:mml="http://www.w3.org/1998/Math/MathML" id="ejss13362-sec-1003" xml:lang="en"〉 〈p xml:lang="en"〉Long‐term experiments (LTEs) have provided data to modellers and agronomists to investigate changes and dynamics of soil organic carbon (SOC) under different cropping systems. As treatment changes have occurred due to agricultural advancements, so too have analytical soil methods. This may lead to method bias over time, which could affect the robust interpretation of data and conclusions drawn. This study aims to quantify differences in SOC due to changes in dry combustion methods over time, using soil samples of a LTE established in 1963 that focuses on mineral and organic fertilizer management in the temperate zone of Northeast Germany. For this purpose, 1059 soil samples, collected between 1976 and 2008, have been analysed twice, once with their historical laboratory method right after sampling, and a second time in 2016 when all samples were analysed using the same elementary analyser. In 9 of 11 soil sampling campaigns, a paired 〈italic toggle="no"〉t〈/italic〉‐test provided evidence for significant differences in the historical SOC values when compared with the re‐analysed concentrations of the same LTE sample. In the sampling years 1988 and 2004, the historical analysis obtained about 0.9 g kg〈sup〉−1〈/sup〉 lower SOC compared with the re‐analysed one. For 1990 and 1998, this difference was about 0.4 g kg〈sup〉−1〈/sup〉. Correction factors, an approach often used to correct for different analytical techniques, could only be applied for 5 of 11 sampling campaigns to account for constant and proportional systematic method error. For this particular LTE, the interpretation of SOC changes due to agronomic management (here fertilization) deviates depending on the analytical method used, which may weaken the explanatory power of the historical data. We demonstrate that analytical method changes over time present one of many challenges in the interpretation of time series data of SOC dynamics. Therefore, LTE site managers need to ensure providing all necessary protocols and data in order to retrace method changes and if necessary recalculate SOC.〈/p〉 〈/sec〉〈sec xmlns:mml="http://www.w3.org/1998/Math/MathML" id="ejss13362-sec-0003" xml:lang="en"〉 〈title〉Highlights〈/title〉 〈p xml:lang="en"〉〈list list-type="bullet" id="ejss13362-list-0001"〉 〈list-item id="ejss13362-li-0001"〉〈p〉A total of 1059 LTE soil samples taken between 1976 and 2008 were re‐analysed for SOC in 2016〈/p〉〈/list-item〉 〈list-item id="ejss13362-li-0002"〉〈p〉Several methodological changes for SOC determination led to significant different SOC concentration in the same sample〈/p〉〈/list-item〉 〈list-item id="ejss13362-li-0003"〉〈p〉Interpretation and time series of LTE soil data suffer from consideration of analytical method changes and poor documentation of the same〈/p〉〈/list-item〉 〈list-item id="ejss13362-li-0004"〉〈p〉Soil archive establishment, thorough method protocols and diligent proficiency testing after soil method changes ameliorate the dilemma〈/p〉〈/list-item〉 〈/list〉〈/p〉 〈/sec〉
    Description: Brandenburger Staatsministerium für Wissenschaft, Forschung und Kultur http://dx.doi.org/10.13039/501100004581
    Description: Bundesministerium für Bildung und Forschung http://dx.doi.org/10.13039/501100004937
    Description: https://doi.org/10.4228/zalf-acge-b683
    Keywords: ddc:631.4 ; Bland–Altman ; carbon stocks ; data trueness ; Deming regression ; method bias ; soil archive ; soil survey
    Language: English
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    Optimised use of data fusion and memory‐based learning with an Austrian soil library for predictions with infrared data (2023)
    Blackwell Publishing Ltd | Oxford, UK
    Details
    Publication Date: 2023-12-12
    Description: 〈title xmlns:mml="http://www.w3.org/1998/Math/MathML"〉Abstract〈/title〉〈p xmlns:mml="http://www.w3.org/1998/Math/MathML" xml:lang="en"〉Infrared spectroscopy in the visible to near‐infrared (vis–NIR) and mid‐infrared (MIR) regions is a well‐established approach for the prediction of soil properties. Different data fusion and training approaches exist, and the optimal procedures are yet undefined and may depend on the heterogeneity present in the set and on the considered scale. The objectives were to test the usefulness of partial least squares regressions (PLSRs) for soil organic carbon (SOC), total carbon (C〈sub〉t〈/sub〉), total nitrogen (N〈sub〉t〈/sub〉) and pH using vis–NIR and MIR spectroscopy for an independent validation after standard calibration (use of a general PLSR model) or using memory‐based learning (MBL) with and without spiking for a national spectral database. Data fusion approaches were simple concatenation of spectra, outer product analysis (OPA) and model averaging. In total, 481 soils from an Austrian forest soil archive were measured in the vis–NIR and MIR regions, and regressions were calculated. Fivefold calibration‐validation approaches were carried out with a region‐related split of spectra to implement independent validations with n ranging from 47 to 99 soils in different folds. MIR predictions were generally superior over vis–NIR predictions. For all properties, optimal predictions were obtained with data fusion, with OPA and spectra concatenation outperforming model averaging. The greatest robustness of performance was found for OPA and MBL with spiking with 〈italic toggle="no"〉R〈/italic〉〈sup〉2〈/sup〉 ≥ 0.77 (N), 0.85 (SOC), 0.86 (pH) and 0.88 (C〈sub〉t〈/sub〉) in the validations of all folds. Overall, the results indicate that the combination of OPA for vis–NIR and MIR spectra with MBL and spiking has a high potential to accurately estimate properties when using large‐scale soil spectral libraries as reference data. However, the reduction of cost‐effectiveness using two spectrometers needs to be weighed against the potential increase in accuracy compared to a single MIR spectroscopy approach.〈/p〉
    Description: Deutsche Forschungsgemeinschaft http://dx.doi.org/10.13039/501100001659
    Keywords: ddc:631.4 ; data fusion ; independent validation ; infrared spectroscopy ; MBL ; nitrogen ; outer product analysis ; pH ; soil organic carbon ; spiking ; total carbon
    Language: English
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    Importance of catchment hydrological processes and calibration of hydrological‐hydrodynamic rainfall‐runoff models in small rural catchments (2023)
    Blackwell Publishing Ltd | Oxford, UK
    Details
    Publication Date: 2024-01-19
    Description: 〈title xmlns:mml="http://www.w3.org/1998/Math/MathML"〉Abstract〈/title〉〈p xmlns:mml="http://www.w3.org/1998/Math/MathML" xml:lang="en"〉In recent years, many two‐dimensional (2D) hydrodynamic models have been extended to include the direct rainfall method (DRM). This allows their application as a hydrological‐hydrodynamic model for the determination of floodplains in one model system. In previous studies on DRM, the role of catchment hydrological processes (CaHyPro) and its interaction with the calibration process was not investigated in detail. In the present, case‐oriented study, the influence of the spatiotemporal distribution of the processes precipitation and runoff formation in combination with the 2D model HEC‐RAS is investigated. In a further step, a conceptual approach for event‐based interflow is integrated. The study is performed on the basis of a single storm event in a small rural catchment (low mountain range, 38 km〈sup〉2〈/sup〉) in Hesse (Germany). The model results are evaluated against six quality criteria and compared to a simplified baseline model. Finally, the calibrated improved model is contrasted with a calibrated baseline model. The results show the enhancement of the model results due to the integration of the CaHyPro and highlight its interplay with the calibrated model parameters.〈/p〉
    Keywords: ddc:551.48 ; 2D hydrodynamic modeling ; calibration ; direct rainfall modeling ; hydrological processes ; radar data ; runoff formation
    Language: English
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  • 28
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    BODIUM—A systemic approach to model the dynamics of soil functions (2023)
    Blackwell Publishing Ltd | Oxford, UK
    Details
    Publication Date: 2024-01-26
    Description: 〈title xmlns:mml="http://www.w3.org/1998/Math/MathML"〉Abstract〈/title〉〈p xmlns:mml="http://www.w3.org/1998/Math/MathML" xml:lang="en"〉The increasing demand for biomass for food, animal feed, fibre and bioenergy requires optimization of soil productivity, while at the same time, protecting other soil functions such as nutrient cycling and buffering, carbon storage, habitat for biological activity and water filter and storage. Therefore, one of the main challenges for sustainable agriculture is to produce high yields while maintaining all the other soil functions. Mechanistic simulation models are an essential tool to fully understand and predict the complex interactions between physical, biological and chemical processes of soils that generate those functions. We developed a soil model to simulate the impact of various agricultural management options and climate change on soil functions by integrating the relevant processes mechanistically and in a systemic way. As a special feature, we include the dynamics of soil structure induced by tillage and biological activity, which is especially relevant in arable soils. The model operates on a 1D soil profile consisting of a number of discrete layers with dynamic thickness. We demonstrate the model performance by simulating crop growth, root growth, nutrient and water uptake, nitrogen cycling, soil organic matter turnover, microbial activity, water distribution and soil structure dynamics in a long‐term field experiment including different crops and different types and levels of fertilization. The model is able to capture essential features that are measured regularly including crop yield, soil organic carbon, and soil nitrogen. In this way, the plausibility of the implemented processes and their interactions is confirmed. Furthermore, we present the results of explorative simulations comparing scenarios with and without tillage events to analyse the effect of soil structure on soil functions. Since the model is process‐based, we are confident that the model can also be used to predict quantities that have not been measured or to estimate the effect of management measures and climate states not yet been observed. The model thus has the potential to predict the site‐specific impact of management decisions on soil functions, which is of great importance for the development of a sustainable agriculture that is currently also on the agenda of the ‘Green Deal’ at the European level.〈/p〉
    Description: Bundesministerium für Bildung und Forschung http://dx.doi.org/10.13039/501100002347
    Description: https://git.ufz.de/bodium/bodium_v1.0
    Keywords: ddc:631.4 ; agriculture ; computational model ; simulation ; soil microbiology ; soil structure ; sustainable soil
    Language: English
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  • 29
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    Temperature and soil moisture change microbial allocation of pesticide‐derived carbon (2023)
    Blackwell Publishing Ltd | Oxford, UK
    Details
    Publication Date: 2024-03-18
    Description: 〈title xmlns:mml="http://www.w3.org/1998/Math/MathML"〉Abstract〈/title〉〈p xmlns:mml="http://www.w3.org/1998/Math/MathML" xml:lang="en"〉Temperature and soil moisture are known to control pesticide mineralization. Half‐life times (DT〈sub〉50〈/sub〉) derived from pesticide mineralization curves generally indicate longer residence times at low soil temperature and moisture but do not consider potential changes in the microbial allocation of pesticide‐derived carbon (C). We aimed to determine carbon use efficiency (CUE, formation of new biomass relative to total C uptake) to better understand microbial utilization of pesticide‐derived C under different environmental conditions and to support the conventional description of degradation dynamics based on mineralization. We performed a microcosm experiment at two MCPA (2‐methyl‐4‐chlorophenoxyacetic acid) concentrations (1 and 20 mg kg〈sup〉−1〈/sup〉) and defined 20°C/pF 1.8 as optimal and 10°C/pF 3.5 as limiting environmental conditions. After 4 weeks, 70% of the initially applied MCPA was mineralized under optimal conditions but MCPA mineralization reached less than 25% under limiting conditions. However, under limiting conditions, an increase in CUE was observed, indicating a shift towards anabolic utilization of MCPA‐derived C. In this case, increased C assimilation implied C storage or the formation of precursor compounds to support resistance mechanisms, rather than actual growth since we did not find an increase in the 〈italic toggle="no"〉tfdA〈/italic〉 gene relevant to MCPA degradation. We were able to confirm the assumption that under limiting conditions, C assimilation increases relative to mineralization and that C redistribution, may serve as an explanation for the difference between mineralization and MCPA dissipation‐derived degradation dynamics. In addition, by introducing CUE to the temperature‐ and moisture‐dependent degradation of pesticides, we can capture the underlying microbial constraints and adaptive mechanisms to changing environmental conditions.〈/p〉
    Description: 〈p xmlns:mml="http://www.w3.org/1998/Math/MathML" xml:lang="en"〉Changing environmental conditions alter the MCPA degradation dynamics and the allocation of pesticide‐derived carbon to anabolic or catabolic metabolism.〈boxed-text position="anchor" content-type="graphic" id="ejss13417-blkfxd-0001" xml:lang="en"〉 〈graphic position="anchor" id="jats-graphic-1" xlink:href="urn:x-wiley:13510754:media:ejss13417:ejss13417-toc-0001"〉 〈/graphic〉 〈/boxed-text〉〈/p〉
    Description: Collaborative Research Center 1253 CAMPOS (DFG)
    Description: Deutsche Forschungsgemeinschaft http://dx.doi.org/10.13039/501100001659
    Description: DFG Priority Program 2322 “Soil System”
    Description: Ellrichshausen Foundation
    Description: Research Training Group “Integrated Hydrosystem modeling”
    Description: https://doi.org/10.5281/zenodo.5081655
    Keywords: ddc:631.4 ; anabolism ; carbon use efficiency ; catabolism ; effect of soil moisture and temperature ; gene‐centric process model ; MCPA biodegradation
    Language: English
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  • 30
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    Reducing tillage intensity benefits the soil micro‐ and mesofauna in a global meta‐analysis (2022)
    Blackwell Publishing Ltd | Oxford, UK
    Details
    Publication Date: 2024-03-22
    Description: Soil fauna drives crucial processes of energy and nutrient cycling in agricultural systems, and influences the quality of crops and pest incidence. Soil tillage is the most influential agricultural manipulation of soil structure, and has a profound influence on soil biology and its provision of ecosystem services. The objective of this study was to quantify through meta‐analyses the effects of reducing tillage intensity on density and diversity of soil micro‐ and mesofaunal communities, and how these effects vary among different pedoclimatic conditions and interact with concurrent management practices. We present the results of a global meta‐analysis of available literature data on the effects of different tillage intensities on taxonomic and functional groups of soil micro‐ and mesofauna. We collected paired observations (conventional vs. reduced forms of tillage/no‐tillage) from 133 studies across 33 countries. Our results show that reduced tillage intensity or no‐tillage increases the total density of springtails (+35%), mites (+23%), and enchytraeids (+37%) compared to more intense tillage methods. The meta‐analyses for different nematode feeding groups, life‐forms of springtails, and taxonomic mite groups showed higher densities under reduced forms of tillage compared to conventional tillage on omnivorous nematodes (+53%), epedaphic (+81%) and hemiedaphic (+84%) springtails, oribatid (+43%) and mesostigmatid (+57%) mites. Furthermore, the effects of reduced forms of tillage on soil micro‐ and mesofauna varied with depth, climate and soil texture, as well as with tillage method, tillage frequency, concurrent fertilisation, and herbicide application. Our findings suggest that reducing tillage intensity can have positive effects on the density of micro‐ and mesofaunal communities in areas subjected to long‐term intensive cultivation practices. Our results will be useful to support decision making on the management of soil faunal communities and will facilitate modelling efforts of soil biology in global agroecosystems. HIGHLIGHTS Global meta‐analysis to estimate the effect of reducing tillage intensity on micro‐ and mesofauna Reduced tillage or no‐tillage has positive effects on springtail, mite and enchytraeid density Effects vary among nematode feeding groups, springtail life forms and mite suborders Effects vary with texture, climate and depth and depend on the tillage method and frequency
    Description: Bundesministerium für Bildung und Forschung http://dx.doi.org/10.13039/501100002347
    Description: https://doi.org/10.20387/bonares-eh0f-hj28
    Keywords: ddc:631.4 ; agricultural land use ; conservation agriculture ; conventional agriculture ; soil biodiversity ; soil cultivation
    Language: English
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  • 31
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    Fifty years after deep‐ploughing: Effects on yield, roots, nutrient stocks and soil structure (2023)
    Blackwell Publishing Ltd | Oxford, UK
    Details
    Publication Date: 2024-05-30
    Description: 〈title xmlns:mml="http://www.w3.org/1998/Math/MathML"〉Abstract〈/title〉〈p xmlns:mml="http://www.w3.org/1998/Math/MathML" xml:lang="en"〉Deep‐ploughing far beyond the common depth of 30 cm was used more than 50 years ago in Northern Germany with the aim to break root‐restricting layers and thereby improve access to subsoil water and nutrient resources. We hypothesized that effects of this earlier intervention on soil properties and yields prevailed after 50 years. Hence, we sampled two sandy soils and one silty soil (Cambisols and a Luvisol) of which half of the field had been deep‐ploughed 50 years ago (soils then re‐classified as Treposols). The adjacent other half was not deep‐ploughed and thus served as the control. At all the three sites, both deep‐ploughed and control parts were then conventionally managed over the last 50 years. We assessed yields during the dry year 2019 and additionally in 2020, and rooting intensity at the year of sampling (2019), as well as changes in soil structure, carbon and nutrient stocks in that year. We found that deep‐ploughing improved yields in the dry spell of 2019 at the sandy sites, which was supported by a more general pattern of higher NDVI indices in deep‐ploughed parts for the period from 2016 to 2021 across varying weather conditions. Subsoil stocks of soil organic carbon and total plant‐available phosphorus were enhanced by 21%–199% in the different sites. Root biomass in the subsoil was reduced due to deep‐ploughing at the silty site and was increased or unaffected at the sandy sites. Overall, the effects of deep‐ploughing were site‐specific, with reduced bulk density in the buried topsoil stripes in the subsoil of the sandy sites, but with elevated subsoil density in the silty site. Hence, even 50 years after deep‐ploughing, changes in soil properties are still detectable, although effect size differed among sites.〈/p〉
    Description: BonaRes http://dx.doi.org/10.13039/501100022576
    Keywords: ddc:631.4 ; aggregates ; carbon sequestration ; deep‐ploughing ; macronutrients ; subsoil ; Treposol
    Language: English
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    Key impacts of climate engineering on biodiversity and ecosystems, with priorities for future research (2016)
    Taylor & Francis
    In:  Journal of Integrative Environmental Sciences, 13 (2-4). pp. 103-128.
    Details
    Publication Date: 2021-04-23
    Description: Climate change has significant implications for biodiversity and ecosystems. With slow progress towards reducing greenhouse gas emissions, climate engineering (or ‘geoengineering’) is receiving increasing attention for its potential to limit anthropogenic climate change and its damaging effects. Proposed techniques, such as ocean fertilization for carbon dioxide removal or stratospheric sulfate injections to reduce incoming solar radiation, would significantly alter atmospheric, terrestrial and marine environments, yet potential side-effects of their implementation for ecosystems and biodiversity have received little attention. A literature review was carried out to identify details of the potential ecological effects of climate engineering techniques. A group of biodiversity and environmental change researchers then employed a modified Delphi expert consultation technique to evaluate this evidence and prioritize the effects based on the relative importance of, and scientific understanding about, their biodiversity and ecosystem consequences. The key issues and knowledge gaps are used to shape a discussion of the biodiversity and ecosystem implications of climate engineering, including novel climatic conditions, alterations to marine systems and substantial terrestrial habitat change. This review highlights several current research priorities in which the climate engineering context is crucial to consider, as well as identifying some novel topics for ecological investigation.
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    A solid phase extraction based non-disruptive sampling technique to investigate the surface chemistry of macroalgae (2016)
    Taylor & Francis
    In:  Biofouling, 32 (2). pp. 145-153.
    Details
    Publication Date: 2019-02-01
    Description: The surface chemistry of aquatic organisms determines their biotic interactions. Metabolites in the spatially limited laminar boundary layer mediate processes, such as antifouling, allelopathy and chemical defense against herbivores. However, very few methods are available for the investigation of such surface metabolites. An approach is described in which surfaces are extracted by means of C18 solid phase material. By powdering wet algal surfaces with this material, organic compounds are adsorbed and can be easily recovered for subsequent liquid chromatography/mass spectrometry (LC/MS) and gas chromatography/mass spectrometry (GC/MS) investigations. The method is robust, picks up metabolites of a broad polarity range and is easy to handle. It is more universal compared to established solvent dipping protocols and it does not cause damage to the test organisms. A protocol is introduced for the macroalgae Fucus vesiculosus, Caulerpa taxifolia and Gracilaria vermiculophylla, but it can be easily transferred to other aquatic organisms.
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  • 34
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    The History of South American Tropical Precipitation for the Past 25,000 Years (2001)
    American Association for the Advancement of Science (AAAS)
    In:  Science, 291 (5504). pp. 640-643.
    Details
    Publication Date: 2017-01-04
    Description: Long sediment cores recovered from the deep portions of Lake Titicaca are used to reconstruct the precipitation history of tropical South America for the past 25,000 years. Lake Titicaca was a deep, fresh, and continuously overflowing lake during the last glacial stage, from before 25,000 to 15,000 calibrated years before the present (cal yr B.P.), signifying that during the last glacial maximum (LGM), the Altiplano of Bolivia and Peru and much of the Amazon basin were wetter than today. The LGM in this part of the Andes is dated at 21,000 cal yr B.P., approximately coincident with the global LGM. Maximum aridity and lowest lake level occurred in the early and middle Holocene (8000 to 5500 cal yr B.P.) during a time of low summer insolation. Today, rising levels of Lake Titicaca and wet conditions in Amazonia are correlated with anomalously cold sea-surface temperatures in the northern equatorial Atlantic. Likewise, during the deglacial and Holocene periods, there were several millennial-scale wet phases on the Altiplano and in Amazonia that coincided with anomalously cold periods in the equatorial and high-latitude North Atlantic, such as the Younger Dryas.
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  • 35
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    Predator and prey: the role of the round goby Neogobius melanostomus in the western Baltic (2017)
    Taylor & Francis
    In:  Marine Biology Research, 13 (2). pp. 188-197.
    Details
    Publication Date: 2020-01-02
    Description: Different studies on the position of the non-indigenous species Neogobius melanostomus within the coastal food web of the Pomeranian Bay (western Baltic) were performed, resulting in a quantitative and qualitative species list of prey organisms found in the stomachs of the invader and an estimation concerning the importance of round goby as prey for different resident predators. It seems that the colonization process is not fully completed yet, but the results reveal that the species is already established in the food web 16 years after the first observation within the study area. The results show that N. melanostomus feed upon a wide range of different resident organisms. While a direct predation effect on native fish species appears rather unlikely, indirect effects such as competition cannot yet be excluded. In addition, our results reveal an ontogenetic diet shift and that the round goby itself already serves as an important prey for piscivorous fish and seabirds. Finally, we formulate different hypotheses based on our results which will require further research.
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  • 36
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    Biological studies on the chokker squidloligo vulgaris reynaudii(Cephalopoda; Myopsida) on spawning grounds off the south-east coast of South Africa (1990)
    Taylor & Francis
    In:  South African Journal of Marine Science, 9 (1). pp. 11-26.
    Details
    Publication Date: 2020-05-26
    Description: The biology of the chokker squid Loligo vulgaris reynaudii on inshore grounds in the South-East Cape was studied by examination of trends in jig catches, length frequency analyses, length/weight relationships, analyses of maturity stages and SCUBA diving transects in a spawning area. Commercial catches probably reflected the influx of squid into shallow waters to spawn. Modal length at spawning was between 265 and 305 mm mantle length (ML) in males and between 175 and 195 mm ML in females. There was no modal progression to indicate growth, nearly all squid were mature, a percentage of males were spent, the level of feeding on the grounds was very low, and mantle walls were thinner than those of squid offshore. These factors all indicate that the squid population inshore had reached the end of its life cycle and was in the spawning phase. The sex ratio was biased towards males, an indication either of differential inshore migration or of greater longevity in males than in females. The frequency of occurrence of trawled egg capsules was highest in summer and all eggs were between 18 and 25 m deep. The preferred substratum for spawning appeared to be low-relief reef interspersed with coarse sand, and the stalks of egg capsules were always embedded in the sand to form individual clusters, as in most other loliginids. No evidence was found of post-spawning mortality in the areas examined.
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  • 37
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    The scent of death: Chemosensory assessment of predation risk by prey animals (1998)
    Taylor & Francis
    In:  Écoscience, 5 (3). pp. 361-394.
    Details
    Publication Date: 2020-04-20
    Description: It is well documented that animals take risk of predation into account when making decisions about how to behave in particular situations, often trading-off risk against opportunities for mating or acquiring energy. Such an ability implies that animals have reliable information about the risk of predation at a given place and time. Chemosensory cues are an important source of such information. They reliably reveal the presence of predators (or their presence in the immediate past) and may also provide information on predator activity level and diet. In certain circumstances (e.g., in the dark, for animals in hiding) they may be the only cues available. Although a vast literature exists on the responses of prey to predator chemosensory cues (or odours), these studies are widely scattered, from marine biology to biological control, and not well known or appreciated by behavioural ecologists. In this paper, we provide an exhaustive review of this literature, primarily in tabular form. We highlight some of the more representative examples in the text, and discuss some ecological and evolutionary aspects of the use of chemosensory information for prey decision making. Curiously, only one example illustrates the ability of birds to detect predator odours and we have found no examples for terrestrial insects, suggesting a fruitful area for future study.
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  • 38
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    Subduction initiation and ophiolite crust: new insights from IODP drilling (2017)
    Taylor & Francis
    In:  International Geology Review, 59 (11). pp. 1439-1450.
    Details
    Publication Date: 2020-02-06
    Description: International Ocean Discovery Program (IODP) Expedition 352 recovered a high-fidelity record of volcanism related to subduction initiation in the Bonin fore-arc. Two sites (U1440 and U1441) located in deep water nearer to the trench recovered basalts and related rocks; two sites (U1439 and U1442) located in shallower water further from the trench recovered boninites and related rocks. Drilling in both areas ended in dolerites inferred to be sheeted intrusive rocks. The basalts apparently erupted immediately after subduction initiation and have compositions similar to those of the most depleted basalts generated by rapid sea-floor spreading at mid-ocean ridges, with little or no slab input. Subsequent melting to generate boninites involved more depleted mantle and hotter and deeper subducted components as subduction progressed and volcanism migrated away from the trench. This volcanic sequence is akin to that recorded by many ophiolites, supporting a direct link between subduction initiation, fore-arc spreading, and ophiolite genesis.
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  • 39
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    Sexual reproduction in four Caribbean commercial sponges. II. Oogenesis and transfer of bacterial symbionts (1991)
    Taylor & Francis
    In:  Invertebrate Reproduction & Development, 19 (1). pp. 13-24.
    Details
    Publication Date: 2017-02-01
    Description: Oogenesis in four commercial Caribbean sponge species, Hippospongia lachne, Spongia barbara, S. cheiris and S. graminea, was studied using light and transmission electron microscopy. Eggs and embryos develop asynchronously in localized endosomal nurseries of these viviparous and gonochoristic species. Statistical analyses of specific morphological characteristics of reproductive elements have unequivocally identified four specific stages in the process of oogenesis. Oogonia undergo mitotic division to produce primary oocytes. Meiotic division occurs producing secondary oocytes which are fertilized before zygotes undergo major growth by phagocytosis and the transfer of nutrients through cytoplasmic bridges. During cleavage of the zygote, umbilici form between embryos and nurse cell layers and these function in the transfer of symbiotic bacteria and other mesohyl substances from the maternal parent to the embryo. These symbionts were observed dispersed between blastomeres of all young and maturing embryos and between internal cells of cytodifferentiated parenchymella larvae. Extracellular transfer of symbiotic bacteria from maternal tissues to developing embryos has not been reported in any other viviparous invertebrate.
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  • 40
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    Distribution and morphological characters of immature Martialia hyadesi (Cephalopoda: Oegopsida) in New Zealand waters (1991)
    Taylor & Francis
    In:  New Zealand Journal of Marine and Freshwater Research , 25 . pp. 275-282.
    Details
    Publication Date: 2020-06-22
    Description: Before 1985, Martialia hyadesi (Cephalopoda: Ommastrephidae) in the Pacific Ocean was known only from the Eltanin Fracture Zone and Macquarie Island. A joint Japan‐New Zealand squid survey around New Zealand captured many immature ommastrephid squids. Gel electrophoresis confirmed the presence of immature M. hyadesi. Aspects of the external morphology are described. The distinctive tentacle club was evident in the smallest specimen examined, 19 mm dorsal mantle length (ML). Arm trabeculae were first evident in specimens of 40–50 mm ML. Immature squid were distributed around and southward of the Subtropical Convergence Zone. The presence of very small squid (〈 10 mm ML) indicated spawning on or near the Auckland Island Shelf.
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  • 41
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    Cephalopods eaten by wandering albatrosses (Diomedea exulansL.) breeding at six circumpolar localities (1992)
    Taylor & Francis
    In:  Journal of the Royal Society of New Zealand, 22 (4). pp. 243-263.
    Details
    Publication Date: 2020-07-16
    Description: The beaks of 9,994 cephalopods of 61 species, obtained mainly from chick regurgitations of wandering albatrosses (Diomedea exulans L.) at Gough, Auckland, Antipodes, Prince Edward and Macquarie Islands and South Georgia, were used to specify and calculate the biomass of cephalopods consumed. Histioteuthidae were most important by numbers and biomass at Gough Island (in warmest seas), but Onycboteuthidae increasingly superseded them southwards; Kondakovia longimana formed 59 to 75% of biomass eaten at the three localities nearest the Antarctic Polar Front. Other important families were Octopoteuthidae, Cranchiidae, Architeuthidae (juveniles) and Ommastrephidae (South Georgia only). Most frequently eaten were Histioteuthis atlantica 13.7%, Galiteuthis glacialis 12.4%, H. eltaninae 12.0% and Kondakovia longimana 11.6%. Wandering albatrosses rearing chicks can forage at least to 3,000 km in a single foray, and may exploit an important food source about 1200 km from the nest (as in the probable commensalism of South Georgian birds with the Falkland Islands fishery). They feed, sometimes opportunistically, on cephalopods active or moribund at the surface, or discarded or lost by trawlers, cetaceans or seals. Vertically migrating cephalopods, especially bioluminescent species, are disproportionately frequent in their non-commensal diet, suggesting that they often feed at night.
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  • 42
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    Some foods of Buller's mollymawk Diomedea bulleri (1986)
    Taylor & Francis
    In:  New Zealand Journal of Zoology, 13 (2). pp. 169-174.
    Details
    Publication Date: 2020-06-22
    Description: Food samples from 27 Buller’s mollymawks Diomedea bulleri from the New Zealand region showed that cephalopods were, by frequency of occurrence and by mass, their preferred food. Fish, crustaceans, and tunicates, in decreasing order of importance, also were taken. Seventeen species of Cephalopoda were identified by their beaks, with 78.5% of individuals belonging to the Ommastrephidae (77% Nototodarus spp.) and 10% to the Histioteuthidae. The diet was compared with that of four other small species of Diomedea, and found to be similar to that of D. chrysostoma, D. irrorata, and D. cauta, but different from that of D. melanophris, whose preferred food is euphausiids. Squid-fishing operations around New Zealand may come into competition with Buller’s mollymawk.
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  • 43
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    Comparison of prey of the black Procellaria petrels of New Zealand (1976)
    Taylor & Francis
    In:  New Zealand Journal of Marine and Freshwater Research , 10 (1). pp. 119-130.
    Details
    Publication Date: 2020-06-22
    Description: Stomach contents of 68 black petrels, Procellaria parkinsoni, 12 Westland black petrels, P. westlandica, and 3 white‐chinned petrels, P. aequinoctialis, were compared. The main prey were Cephalopoda and fish, and these indicated predominantly nocturnal feeding with selection for bioluminescent forms. There is marked latitudinal variation in the Cephalopoda available to these petrels.
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  • 44
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    Big squid in big currents (1992)
    Taylor & Francis
    In:  South African Journal of Marine Science, 12 (1). pp. 225-235.
    Details
    Publication Date: 2020-05-26
    Description: A link is proposed between the processes that led to the evolution of large species of squid and the highly variable, cyclic recruitment seen in squid fisheries. Maximum growth requires maximal feeding and minimal routine metabolism at optimum temperatures, which decrease as squid grow. Topographically induced upwelling zones, inshore of western boundary currents, provide productive environments with appropriate temperatures for all life stages. Most squid are small and live in the tropics or subtropics; locomotor constraints prevent them from swimming long distances. Long annual migrations to spawn upstream in current systems require short-lived squids to maximize rates of growth. Therefore, such systems provide the opportunity and a powerful selective advantage for large size and rapid growth. Increased fecundity and cannibalism provide additional directional selection for large individuals. Current systems show food production peaks (blooms); paralarval release must match these to increase survival. Because squid are semelparous, disruption of delicately balanced lifecycles by physical events can virtually annihilate stocks. Recovery probably requires that populations of large squid "re-evolve" from smaller, more-stable tropical populations of small squid. This recovery phase may extend the "down-side" of abundance cycles. Studies of squid/current systems have focused on western boundary currents, but the Illex complex also associates with eastern boundaries. Such populations are generally smaller than in larger systems, supporting the hypothesis, but more detailed comparisons are required.
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  • 45
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    The distribution and abundance of cephalopods on the continental slope of the eastern South Atlantic (1992)
    Taylor & Francis
    In:  South African Journal of Marine Science, 12 (1). pp. 739-752.
    Details
    Publication Date: 2020-05-26
    Description: During a cruise in March 1988 dedicated to investigation of the marine resources of South Africa's continental slope, 62 species in 22 families of Cephalopoda were collected from the Cape Canyon and Cape Point Valley. Multivariate analysis revealed a clear distinction between cephalopods of the upper and lower continental slope in both benthic and epibenthic habitats. Todaropsis eblanae and Todarodes angolensis were indicator species for the upper slope benthic, from 300 to 500 m, but on the lower slope, in 700–900 m of water, they were replaced by Histioteuthis miranda and Opisthoteuthis agassizii. In the epibenthic, both upper and lower slopes were dominated by Abraliopsis gilchristi and Lycoteuthis ?diadema, but other species characteristic of the lower slope were the oceanic species Mastigoteuthis hjorti, Ctenopteryx sicula and Taonius sp. A. Cranchia scabra indicated the presence of oceanic water at stations 700–900 m deep. Other species of significance in the catches were Todarodes filippovae, Histioteuthis macrohista, Rossia enigmatica and Bathypolypus valdiviae. Species affinities indicate that the cephalopod fauna of the southern African continental slope includes the following zoogeographic components: southern African endemic, circum-Subantarctic species associated with Antarctic Intermediate Water, circum-global southern tropical/subtropical, tropical Indo-Pacific and cosmopolitan tropical/subtropical.
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  • 46
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    The importance of cephalopods as prey for hake and other groundfish in South African waters (1992)
    Taylor & Francis
    In:  South African Journal of Marine Science, 12 (1). pp. 651-662.
    Details
    Publication Date: 2020-05-26
    Description: Literature on trophic relationships in the Benguela ecosystem has stressed the importance of cephalopods as prey of groundfish. The groundfish community of the shelf and upper slope of southern Africa is dominated by the Cape hakes, and the results presented (1984–1991) confirm that both species of hake are important predators of cephalopods, especially taking into consideration the abundance of hake in the ecosystem. However, geographic, seasonal and species variability are evident in the patterns observed. The main prey species are Sepia spp. (predominantly Sepia australis), Loligo vulgaris reynaudii, Todaropsis eblanae and Lycoteuthis ?diadema. The last-named is an important food organism for fish. Its systematic status needs revision, however. Qualitative results of studies of cephalopod predation are also provided for kingklip and monkfish.
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  • 47
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    Cephalopods and the Benguela ecosystem: trophic relationships and impact (1992)
    Taylor & Francis
    In:  South African Journal of Marine Science, 12 (1). pp. 791-802.
    Details
    Publication Date: 2020-05-26
    Description: Cephalopods of importance in the Benguela ecosystem include Loligo vulgaris reynaudii, Todarodes angolensis, Todaropsis eblanae, Lycoteuthis ?diadema, Sepia australis, Octopus spp. (up to three species) and Argonauta spp., and possibly also Ocythoe tuberculata and Rossia enigmatica. Species which may prove important as a result of further research are Lolliguncula mercatoris, Ommastrephes bartramii, Todarodes filippovae, Histioteuthis miranda and Abraliopsis gilchristi. "Importance" is defined on the basis of "survey abundance" (including commercial fisheries) and their trophic links with other organisms. Use of the latter criterion indicates that Sepia australis, Todaropsis eblanae and Lycoteuthis ?diadema are sufficiently abundant to be exploited by fisheries. Unknown factors are dispersal, availability and market considerations. The only examples of cephalopods feeding on commercial species of fish are Loligo v. reynaudii feeding on anchovy Engraulis capensis and Cape hakes Merluccius capensis and/or M. paradoxus in the southern Benguela and Todarodes angolensis preying on Cape hake in the northern Benguela. Such feeding is opportunistic and is not believed to threaten the fish stocks. Predators of cephalopods are mostly opportunistic, switching to other prey when cephalopods are not available. There is no evidence that such predators pose a threat to the Loligo fisheries. The opportunistic nature of cephalopods as prey and predators makes quantification of predation (in both directions) difficult. Data for such quantification are, as yet, unavailable.
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  • 48
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    Cephalopods of the Benguela Current off Namibia: new additions and considerations on the genus Lycoteuthis (1993)
    Taylor & Francis
    In:  Journal of Natural History, 27 (1). pp. 15-46.
    Details
    Publication Date: 2020-07-21
    Description: The present study contributes new information on the cephalopods off Namibia, contains the first record of Ornithoteuthis volatilis (Sasaki, 1915) in the Atlantic, and adds records of six species in the Benguela Current and three species in Namibian waters. The presence of certain species seldom encountered in the Benguela Current has been confirmed. A compilation of the cephalopod fauna off Namibia had also been included, listing 65 species. Additional morphological data on Stoloteuthis leucoptera, Lycoteuthis lorigera, Architeuthis sp., Pholidoteuthis boschmai, Ornithoteuthis volatilis, Eledone nigra, and Graneledone sp. have been provided. The status of the genus Lycoteuthis has been reviewed in the light of the first collection of Lycoteuthis lorigera (Steenstrup, 1875) males in the Atlantic, and Lycoteuthis diadema (Chun, 1900) has been considered to be a synonym for Lycoteuthis lorigera
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  • 49
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    Abundance and distribution of rhynchoteuthion larvae ofIllex argentlnus(Cephalopoda: Ommastrephidae) in the south-western Atlantic (1992)
    Taylor & Francis
    In:  South African Journal of Marine Science, 12 (1). pp. 927-941.
    Details
    Publication Date: 2020-05-26
    Description: The results of ichthyoplankton surveys carried out by the Instituto Nacional de Pesca (INAPE) in the Argentine–Uruguayan Common Fishing Zone (AUCFZ) in summer 1980 and the winters of 1980–1982 are presented. In addition, the results of joint research with INIDEP, the Argentine and Japan Fisheries Agency, on larvae, juveniles and adults of the short-finned squid Illex argentinus carried out in winter 1989 are given, as are data obtained during the joint sardine and anchovy recruitment project carried out by R.V. Meteor in November/December 1989. The short-finned squid Illex argentinus is the most important cephalopod resource of the area, and an extended fishery is carried out on the Patagonian shelf and in the proximity of the Falkland Islands. The fishing season in the AUCFZ, for pre-spawning and spawning animals, extends from early autumn to winter (March–August). Abundance of rhynchoteuthion larvae (417–485 larvae·10 m−2) was greatest in winter in surface temperatures of 12,1–16,9°C and surface salinities of 34,8 – 35,2 × 10−3. The distribution of the larvae is related to the western boundary of the Brazil Current and the convergence front.
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  • 50
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    Can the Loligosquid fishery be managed effectively? A synthesis of research on Loligo vulgaris reynaudii (1992)
    Taylor & Francis
    In:  South African Journal of Marine Science, 12 (1). pp. 903-918.
    Details
    Publication Date: 2020-05-26
    Description: The question whether the chokka squid Loligo vulgaris reynaudii resource can be managed effectively is examined in the light of developments in the fishery and knowledge of the resource gathered in recent years. The history of the fishery since its inception in 1985, management controls and the current state of knowledge of stock identity, distribution, seasonality and abundance, life cycle and population dynamics are reviewed as a background to a discussion of management alternatives. Long-term measures, such as fleet limitation, seasonal closures and de facto closed areas and size limits, all appropriate in the early stages of a fishery when knowledge is limited, should be replaced by more-flexible alternatives as knowledge improves. Methods of stock assessment, stock-recruitment studies and further basic biological analyses are recognized as being crucial to improving management methods. An explanation embracing physical oceanographic features and plankton productivity in the vicinity of the spawning grounds is advanced for the mechanisms underlying hatchling survival. The possible contribution of trophic studies to squid management is recognized. Effective management of the chokka squid resource is concluded to be possible provided that the specific areas needing attention be addressed by means of goal-orientated research. Rational, but not necessarily optimal, management decisions can, however, be made even in the absence of stock-recruitment data, by the employment of common-sense measures which generally include some form of effort control.
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  • 51
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    Inhibitory potential of strepthonium A against Shiga toxin production in enterohemorrhagic Escherichia coli (EHEC) strain EDL933 (2017)
    Taylor & Francis
    In:  Natural Product Research, 31 (23). 2818-2823 .
    Details
    Publication Date: 2020-02-06
    Description: The production of shiga toxin (Stx) is a critical step in the establishment and progress of enterohemorrhagic Escherichia coli (EHEC) infections. The possible release of Stx from dead and dying bacteria, and the risk of resistance development have restricted the usage of antibiotics against EHEC. The chlorinated quaternary ammonium compound, strepthonium A, was isolated from the culture of Streptomyces sp. SBT345 that was cultivated from the Mediterranean sponge Agelas oroides. The structure was elucidated and confirmed by spectroscopic analyses including 1D and 2D NMR, ESI-HRMS, as well as ESI-HRMS2. Strepthonium A follows Lipinski's rule of five with respect to its molecular weight, CLogP values and the number of hydrogen acceptors and donors. Verotoxin ELISA assay demonstrated that Strepthonium A reduced the Stx production in EHEC strain EDL933 at 80 μM concentration without growth inhibition. This study demonstrates the potential of strepthonium A in restraining the production of Stx in EHEC infections.
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  • 52
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    Urbanization dynamics of Tehran city (1975–2015) using artificial neural networks (2017)
    Taylor & Francis
    In:  Journal of Maps, 13 (1). pp. 24-30.
    Details
    Publication Date: 2020-02-06
    Description: Land-use dynamic is a major challenge for town and country planners especially in developing countries such as Iran. Iran has been under rapid urban expansion and population growth for past three decades which led to lack of resources, environmental deterioration and haphazard landscape development. In this paper, an attempt has been made to map the urbanization dynamics of Tehran in 40 years based on remote sensing imagery and by means of artificial neural networks. The presented scheme could be taken into consideration when planning initiatives aimed at surveying, monitoring, managing and sustainable development of the territory. Moreover, it can serve the experts in the fields of geography, urban studies and planning as a background for number of geographical analyses.
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  • 53
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    Morphological Features of Co-Rich Manganese Deposits and Their Relation to Seabed Slopes (2000)
    Taylor & Francis
    In:  Marine Georesources & Geotechnology, 18 (1). pp. 43-76.
    Details
    Publication Date: 2017-05-09
    Description: The morphological features associated with Co-rich manganese deposits, the size variations of nodules, and the occurrence of different substrates have been analyzed, to evaluate the influence of various seabed slope angles on the distribution of these features. The coverage and size of the crusts depend on their surface morphology and seabed topography, resulting in cobble-type, lineated, or step-like outcrops. Small nodules (1–4 cm in diameter) dominate all seabed slopes, with a few locations having nodules ranging from 1 to 8 or 1 to 10 cm. Sediments invariably occur as substrates for nodules and as cover for crusts, their coverage being inversely proportional to that of the nodules and crust outcrops.
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  • 54
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    Chitin and collagen as universal and alternative templates in biomineralization (2010)
    Taylor & Francis
    In:  International Geology Review, 52 (7-8). pp. 661-699.
    Details
    Publication Date: 2017-05-12
    Description: Biomineralized structures and tissues are composites, containing a biologically produced organic matrix and nano- or microscale amorphous or crystalline minerals. Two main examples of organic matrices – the amino-polysaccharide chitin and the asymmetric protein collagen – are presented and discussed as the basic structural modules and organo-templates for calcium and silica biomineralization in nature. Both serve as templates, providing preferential sites for nucleation and controlling the location and orientation of mineral phases. Here, for the first time, chitin and collagen are analysed from evolutionary, structural, and functional points of view with respect to their templating properties in calcification and silicification phenomena, using both in vivo and in vitro data. It is proposed that these biopolymers be characterized as fundamental templates in biomineralization, inasmuch as they are very ancient from an evolutionary point of view, common to many species and biological systems with a global distribution. The two polymers also exhibit very similar hierarchical structural organizations, in spite of the possible alternatives they provide in chemical nature and origin. In addition, the phenomenon of multi-phase mineralization – where two minerals, amorphous and crystalline CaCO3, form from one biomolecule, chitin – is also described, analysed, and discussed for the first time.
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  • 55
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    Computer-aided identification of coelacanths, Latimeria chalumnae, using scale patterns (2012)
    Taylor & Francis
    In:  Marine Biology Research, 8 (3). pp. 300-306.
    Details
    Publication Date: 2017-06-20
    Description: Despite coelacanths, Latimeria chalumnae, being listed as either endangered by CITES or critically endangered by the IUCN, their population size within South Africa is unknown and still needs to be estimated. Their conservation status unfortunately excludes the use of conventional tagging to mark individual animals for a possible mark–recapture experiment. This study shows that because coelacanths have a unique spot patterning it is possible to quickly and accurately identify specific individuals photographically using computer-aided identification software. Without any manual intervention by an operator, the software accurately identified between 56 and 92% of the individuals. Indentification success increased to 100% if the operator could also manually select from other potential matching photographs. It was also shown that fish exhibiting a yaw angle not exceeding 60° could be accurately identified in photographs, although the percentage of fish correctly identified without operator-intervention decreased rapidly with increasing yaw angle. Computer-aided identification should therefore facilitate future coelacanth research as it is both efficient and accurate while also reducing potential stress on the animals observed.
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  • 56
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    Microbial Reefs in the Black Sea Fueled by Anaerobic Oxidation of Methane (2002)
    American Association for the Advancement of Science (AAAS)
    In:  Science, 297 (5583). pp. 1013-1015.
    Details
    Publication Date: 2017-07-07
    Description: Massive microbial mats covering up to 4-meter-high carbonate buildups prosper at methane seeps in anoxic waters of the northwestern Black Sea shelf. Strong 13C depletions indicate an incorporation of methane carbon into carbonates, bulk biomass, and specific lipids. The mats mainly consist of densely aggregated archaea (phylogenetic ANME-1 cluster) and sulfate-reducing bacteria (Desulfosarcina/Desulfococcusgroup). If incubated in vitro, these mats perform anaerobic oxidation of methane coupled to sulfate reduction. Obviously, anaerobic microbial consortia can generate both carbonate precipitation and substantial biomass accumulation, which has implications for our understanding of carbon cycling during earlier periods of Earth's history.
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  • 57
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    Side-Scan Sonar Characteristics and Manganese Nodule Abundance in the Clarion-Clipperton Fracture Zones, NE Equatorial Pacific (2004)
    Taylor & Francis
    In:  Marine Georesources & Geotechnology, 22 (1-2). pp. 103-114.
    Details
    Publication Date: 2017-07-20
    Description: The deep ocean floor between the Clarion and Clipperton fracture zones (NE equatorial Pacific) has the highest known manganese nodule abundance in the world oceans. A detailed analysis of MR1 (Mapping Researcher 1, 11–12 kHz) sonar images and free-fall grab data in the Korean manganese nodule field areas reveals a close relationship between side-scan sonar characteristics of the seafloor and manganese nodule abundance. Eight sonar facies are identified based on back-scattering intensity and distribution patterns. These sonar facies can be interpreted as (1) volcanic seamounts (facies I-1), (2) bounding faults of abyssal hills (facies I-2 and II-1), (3) lava flows or volcanoclastic mass-flow deposits around the volcanic seamounts (facies I-3 and II-2), (4) crests of abyssal hills (facies II-1), (5) abyssal troughs between abyssal hills (facies III-1), (6) relatively flat areas (facies II-3 and III-2). In the areas where facies II-1 (abyssal hill crests with thin sediment cover) and II-3 (relatively flat areas draped by thin sediments) are dominant, manganese nodules occur abundantly. In contrast, zones comprising facies III-1 (abyssal troughs with thick sediment cover) and III-2 (relatively flat areas covered by thick sediments) are characterized by low abundance of manganese nodules. This relationship between distribution of sonar facies and manganese nodule abundance implies that (1) the qualitative difference in acoustic reflectivity of long-range sidescan sonar with some ground truth data is useful for regional assessment of manganese nodule occurrence over wide areas in a reasonable time, and (2) seafloor topography and sediment thickness are important controlling factors for regional occurrences of manganese nodules.
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  • 58
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    Video observations on the habitat association of demersal nekton in the midshelf benthic environment off the Orange River, Namibia (2000)
    Taylor & Francis
    In:  South African Journal of Marine Science, 22 (1). pp. 1-7.
    Details
    Publication Date: 2017-07-06
    Description: A semi-quantitative assessment is made of the animals observed in archived videotapes taken from the research submersible Jago, during diamond mining and exploratory surveys off the mouth of the Orange River on the west coast of southern Africa (28°15′S, 29°11′S) in November 1996. The seabed environment is described and nekton associations with substratum features are identified. The area is characterized by heterogeneity to its physical and biological struture. The variety of observed nekton is low, and communities are dominated by goby Sufflogobius bibarbatus, juvenile hake Merluccius spp. and cuttlefish Sepia spp. (on soft substrata), as well as false jacopever Sebastes capensis and kingklip Genypterus capensis (on rocky substrata).
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  • 59
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    An annotated list of deep-sea fishes collected in the northern Red Sea, Gulf of Aqaba (1993)
    Taylor & Francis
    In:  Israel Journal of Zoology, 39 (4). pp. 299-336.
    Details
    Publication Date: 2017-08-10
    Description: During the years 1989–1993 an intensive collection of fishes from the aphotic zone (below 150 m) of the northern part of the Gulf of Aqaba was conducted. This survey recorded 69 fish species, 8 elasmobranchs, and 61 teleosts, belonging to 45 families. Fifteen species are endemic to the Red Sea: Mustelus mosis, Narcine bentuviai, Rhinobatos punctifer, Ophichthus echeloides, Rhynchoconger sp., Physiculus marisrubri, Ostichthys hypsipterygion sufensis, Pterygotrigla sp., Uranoscopus marisrubri, Parascolopsis sp.1 and sp. 2, Atrobucca geniae, Chromis pelloura, Samariscus sp., Thamnaconus modestoides erythraeensis. Eleven species are new records for the Red Sea: Gymnothorax johnsoni, Rhynchoconger sp., Synodus doaki, Pterygotrigla sp., Chelidoperca pleurospilus, Carangoides equula, Parascolopsis sp. 1 and sp. 2, Bodianus leucostictus, Paracaesio sordidus, and Samariscus sp. Two species, Cociella crocodilo and Parascolopsis eriomma, are first substantiated records for the Red Sea. None of the species recorded in this list is considered conventional deep-sea fishes. The ichthyofauna of the aphotic zone of the Gulf of Aqaba is composed of species of shallower origin.
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  • 60
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    A new flow-through bioassay for testing low-emission antifouling coatings (2017)
    Taylor & Francis
    In:  Biofouling, 33 (8). pp. 613-623.
    Details
    Publication Date: 2020-02-06
    Description: Current antifouling (AF) technologies are based on the continuous release of biocides into the water, and consequently discharge into the environment. Major efforts to develop more environmentally friendly coatings require efficient testing in laboratory assays, followed by field studies. Barnacles are important fouling organisms worldwide, increasing hydrodynamic drag on ships and damaging coatings on underwater surfaces, and thus are extensively used as models in AF research, mostly in static, laboratory-based systems. Reliable flow-through test assays for the screening of biocide-containing AF paints, however, are rare. Herein, a flow-through bioassay was developed to screen for diverse low-release biocide paints, and to evaluate their effects on pre- and post-settlement traits in barnacles. The assay distinguishes between the effects from direct surface contact and bulk-water effects, which are crucial when developing low-emission AF coatings. This flow-through bioassay adds a new tool for rapid laboratory-based first-stage screening of candidate compounds and novel AF formulations.
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  • 61
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    Trichocitrin, a new fusicoccane diterpene from the marine brown alga-endophytic fungusTrichoderma citrinoviridecf-27 (2016)
    Taylor & Francis
    In:  Natural Product Research, 30 (14). pp. 1605-1610.
    Details
    Publication Date: 2019-02-01
    Description: One new diterpene, trichocitrin (1), and four known secondary metabolites, nafuredin (2), 5-hydroxy-2,3-dimethyl-7-methoxychromone (3), 24-methylenecycloartanol (4) and citrostadienol (5), were isolated from the culture of marine brown alga-endophytic Trichoderma citrinoviride cf-27. Trichocitrin (1) represents the first Trichoderma-derived and furan-bearing fusicoccane diterpene, and its structure and relative configuration were identified by analysis of 1D/2D NMR and mass spectroscopic data. Compounds 1 and 2 exhibited 8.0- and 9.5-mm inhibition zones, respectively, against Escherichia coli at 20 μg/disc and 54.1 and 36.7% growth inhibition, respectively, of Prorocentrum donghaiense at 80 μg/mL.
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  • 62
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    Poissons characoïdes de l'Amazonie péruvienne (1964)
    Taylor & Francis
    In:  Beitrage zur Neotropischen Fauna, 4 (1). pp. 1-44.
    Details
    Publication Date: 2017-09-07
    Description: Description of 64 species of fresh‐water Fishes of the suborder Characoidei (Cypriniformes), collected by Dr. K. H. Lüling during his 1959/60 Expedition in lower Ucayali and Iquitos regions. New forms for science (about 10 per cent of the collected species) are: a new genus, Oxybrycon, which seems to be close to Leptobrycon and Macropsobrycon; a Hemigrammus‐species and 2 Hyphessobrycon‐species; a Cheirodon (the genus was not signaled from Peruvian Amazon); and a Serrasalmus. Besides, 10 species seem to be new for the concerned territory, whereas 2 other forms have been described in former papers (see References). Some identification‐Keys are given, concerning Amazonian Triportheus and Schizodon, as well as concerning one Curimatus‐group of species. Finally a list of the characoid Fishes, known to occur in the Iquitos surroundings and in the lower Ucayali, is given.
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  • 63
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    Sulfoglycolipid from the marine brown alga Sargassum Hemiphyllum (2001)
    Taylor & Francis
    In:  Journal of Asian Natural Products Research, 3 (2). pp. 117-122.
    Details
    Publication Date: 2018-02-05
    Description: One kinds of glycolipid (SBI) have been isolated from the marine brown alga Sargassum hemiphyllum (Turn.) Ag. The structures of SBI have been determined as the sodium salt of 1-0-acyl-3-0-(6′-sulfo-α-D-quinovopyrannosyl) glycerol (acyl: tetradecanoyl, pentadecanoyl, 11-hexadecenoyl, hexadecanoyl, 10,13-octadecadienoyl, 9-octade cenoyl, 15-metylheptadecanoyl and 11-eicosenoyl 17:1.5:19:153:1:19:1:2) on the basis of chemical and spectral evidence and GC-MS analysis, respectively. Four constituents of the SBI were new compounds [the sodium salt of 1-0-(11″-hexadecenoyl)-3-0-(6′-sulfo-α-D-quinovopyrannosyl) glycerol, the sodium salt of 1-0-(10″,13″-octadecadienoyl)-3-0-(6′-sulfo-α-D-quinovopyrannosyl) glycerol, and the sodium salt of 1-0-(15″-metylhexadecenoyl)-3-0-(6′-sulfo-α-D-quinovopyrannosyl) glycerol, and the sodium salt of 1-0-(11″-eicosenoyl)-3-0-(6′-sulfo-α-D-quinovopyrannosyl) glycerol]. All compounds were isolated from marine brown alga for the first time.
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  • 64
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    The French Global Geosciences Transect between Brabant and the Basque Provinces: A Complete Section of the Variscan Orogen of Western Europe (1999)
    Taylor & Francis
    In:  International Geology Review, 41 (3). pp. 243-262.
    Details
    Publication Date: 2017-11-24
    Description: A new image of the French continental crust between Brabant (Belgium) and the Basque province of Spain is presented on the basis of considerable recent geological and geophysical information as well as the compilation and reInterprétation of previously available data. The resulting section, which shows the main basement structures to a depth of 45 km, also is the first nonspeculative image of the westernmost part of the Variscan orogen. The French Global Geoscience Transect reveals a complete picture of this orogen between its remnant root and the surface. The divergent thrusts are bounded on the north and in the south by the old Brabant and Ebro-Aquitaine cratons, respectively; these thrusts also involve two previous plate boundaries. The lower part of the orogen is limited by a layered lower crust, probably of Permian age. Near the surface the Hercynian orogen is buried—near the northern end of the transect by the Paris Basin, which can be considered an eastward extension of the English Channel, and in the south by the South Armorican continental margin, which makes a transition between the oceanic crust of the Bay of Biscay and the axis of the Variscan orogen. In this area, the deep Parentis graben is located at the site of pronounced crustal thinning, since only 7 km of Hercynian crust are now preserved.
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  • 65
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    Depositional setting, provenance, and tectonic-volcanic setting of Eocene–Recent deep-sea sediments of the oceanic Izu–Bonin forearc, northwest Pacific (IODP Expedition 352) (2018)
    Taylor & Francis
    In:  International Geology Review, 60 (15). pp. 1816-1854.
    Details
    Publication Date: 2021-02-08
    Description: New biostratigraphical, geochemical, and magnetic evidence is synthesized with IODP Expedition 352 shipboard results to understand the sedimentary and tectono-magmatic development of the Izu–Bonin outer forearc region. The oceanic basement of the Izu–Bonin forearc was created by supra-subduction zone seafloor spreading during early Eocene (c. 50–51 Ma). Seafloor spreading created an irregular seafloor topography on which talus locally accumulated. Oxide-rich sediments accumulated above the igneous basement by mixing of hydrothermal and pelagic sediment. Basaltic volcanism was followed by a hiatus of up to 15 million years as a result of topographic isolation or sediment bypassing. Variably tuffaceous deep-sea sediments were deposited during Oligocene to early Miocene and from mid-Miocene to Pleistocene. The sediments ponded into extensional fault-controlled basins, whereas condensed sediments accumulated on a local basement high. Oligocene nannofossil ooze accumulated together with felsic tuff that was mainly derived from the nearby Izu–Bonin arc. Accumulation of radiolarian-bearing mud, silty clay, and hydrogenous metal oxides beneath the carbonate compensation depth (CCD) characterized the early Miocene, followed by middle Miocene–Pleistocene increased carbonate preservation, deepened CCD and tephra input from both the oceanic Izu–Bonin arc and the continental margin Honshu arc. The Izu–Bonin forearc basement formed in a near-equatorial setting, with late Mesozoic arc remnants to the west. Subduction-initiation magmatism is likely to have taken place near a pre-existing continent–oceanic crust boundary. The Izu–Bonin arc migrated northward and clockwise to collide with Honshu by early Miocene, strongly influencing regional sedimentation.
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    A new compound, jolynamine, from marine brown alga Jolyna laminarioides (2011)
    Taylor & Francis
    In:  Natural Product Research, 25 (9). pp. 898-904.
    Details
    Publication Date: 2018-01-24
    Description: A new compound, jolynamine (1), was isolated from the marine brown alga Jolyna laminarioides collected from the coast of Karachi, Pakistan. In addition, four known compounds, namely saringosterol (2), loliolide (3), methyl-4-hydroxybenzoate (4) and propyl-4-hydroxybenzoate (5), were isolated for the first time from the marine brown alga Iyengaria stellata, and two known compounds, namely 3,4,5-trimethylaniline (6) and harmine (7), were isolated for the first time from the marine brown alga Melanothamnus afaqhusainii. Compound 6 is synthetically known but was isolated for the first time from a natural source. The structures of these compounds were elucidated with the help of powerful spectroscopic techniques. Furthermore, the methanolic extracts of both algae showed anti-microbial activities against various bacteria and fungi.
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    The influence of temperature, sex and chela size in the foraging strategy of the shore crab,Carcinus maenas(L.) (1980)
    Taylor & Francis
    In:  Marine Behaviour and Physiology, 7 (1). pp. 15-24.
    Details
    Publication Date: 2018-04-18
    Description: Foraging rate was highly variable among shore crabs of the same size category and for individual crabs from day to day. Possible physiological reasons for this variability are discussed. Shore crab foraging rate, both in terms of mussels eaten per day and energy intake per day, was estimated to be higher at 17°C than at 10°C. The shape of diet curves and their mode for male shore crabs at 17°C closely resembled those for 10°C, indicating that the temperature increase had no effect on their previously demonstrated optimal foraging strategy. Female and certain male shore crabs showed a preference for prey smaller than for other equivalent sized males. These suboptimally feeding male and female crabs attained a relatively higher prédation rate (mussels day‐1), although their energy intake (KJ day‐1) remained lower than that of optimally feeding males. Preferred mussel size, number of mussels eaten per day and energy intake were strongly related to master chela height. The diet curves for female and suboptimally feeding male shore crabs could be explained by these crabs’ proportionately smaller master chelae.
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    Taxonomy, biology and phylogeny of Miraciidae (Copepoda: Harpacticoida) (1994)
    Taylor & Francis
    In:  Sarsia, 79 (3). pp. 207-283.
    Details
    Publication Date: 2018-04-19
    Description: The holoplanktonic family Miraciidae (Copepoda, Harpacticoida) is revised and a key to the four monotypic genera presented. Amended diagnoses are given for Miracia Dana, Oculosetella Dahl and Macrosetella A. Scott, based on complete redescriptions of their respective type species M. efferata Dana, 1849, O. gracilis (Dana, 1849) and M. gracilis (Dana, 1847). A fourth genus Distioculus gen. nov. is proposed to accommodate Miracia minor T. Scott, 1894. The occurrence of two size-morphs of M. gracilis in the Red Sea is discussed, and reliable distribution records of the problematic O. gracilis are compiled. The first nauplius of M. gracilis is described in detail and changes in the structure of the antennule, P2 endopod and caudal ramus during copepodid development are illustrated. Phylogenetic analysis revealed that Miracia is closest to the miraciid ancestor and placed Oculosetella-Macrosetella at the terminal branch of the cladogram. Various aspects of miraciid biology are reviewed, including reproduction, postembryonic development, vertical and geographical distribution, bioluminescence, photoreception and their association with filamentous Cyanobacteria (Trichodesmium).
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    Shear Strength of Artificially Cemented Sands (2009)
    Taylor & Francis
    In:  Marine Georesources & Geotechnology, 27 (3). pp. 201-216.
    Details
    Publication Date: 2018-04-24
    Description: In this study, a series of drained triaxial tests were performed in order to examine the effect of cementation on the shear behavior of granular soil. It was observed that the brittle nature and dilative tendency of granular soil is dominant under a low confining stress level, while high confining stress results in a contractive behavior despite the strong cementation bond. Based on experimental results, an idealized concept is suggested to define the shear strength of cemented sand in three distinctive zones: the cementation control zone with a constant cohesion intercept at a low confining stress level, the transition zone in which the cohesion intercept is gradually reduced after a breaking point, and the stress control zone with almost zero cohesion intercept due to breakage of cementation bonds at a high confining stress level. It was shown that the sitting pressures during cementation have little effect on the strength parameters of cemented sand, while the increase of gypsum content and relative density, and the decrease of particle size, result in an increase of the cohesion intercept and the breaking point. In addition, the prediction equations for the shear strength and cohesion intercept in the cementation control zone and the transition zone are suggested from the analytical and experimental interpretation.
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    Robustness of random forests for regression (2012)
    Taylor & Francis
    In:  Journal of Nonparametric Statistics, 24 (4). pp. 993-1006.
    Details
    Publication Date: 2018-03-26
    Description: In this paper, we empirically investigate the robustness of random forests for regression problems. We also investigate the performance of six variations of the original random forest method, all aimed at improving robustness. These variations are based on three main ideas: (1) robustify the aggregation method, (2) robustify the splitting criterion and (3) taking a robust transformation of the response. More precisely, with the first idea, we use the median (or weighted median), instead of the mean, to combine the predictions from the individual trees. With the second idea, we use least-absolute deviations from the median, instead of least-squares, as splitting criterion. With the third idea, we build the trees using the ranks of the response instead of the original values. The competing methods are compared via a simulation study with artificial data using two different types of contaminations and also with 13 real data sets. Our results show that all three ideas improve the robustness of the original random forest algorithm. However, a robust aggregation of the individual trees is generally more profitable than a robust splitting criterion.
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    Squid beaks regurgitated by greyheaded and yellownosed albatrosses,Diomedea chrysostoma and D. chlororhynchos at the Prince Edward Islands (1986)
    Taylor & Francis
    In:  Ostrich, 57 (4). pp. 203-206.
    Details
    Publication Date: 2020-06-15
    Description: Squid regurgitated by Greyheaded and Yellownosed Albatrosses at the Prince Edward Islands were predominantly two onychoteuthid species, Kondakovia longimana and Moroteuthis knipovitchi. Both squid are characteristic of cold, Antarctic waters and may have been caught south of the Antarctic Convergence, some 350 km to the south of the breeding station. Both albatross species regurgitated similar squid (by species and size), and these squid were similar to those found in previous studies of the diet of Wandering, Sooty and Lightmantled Sooty Albatrosses at the Prince Edward Islands
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    Ecosystem considerations of the KwaZulu-Natal sardine run (2010)
    Taylor & Francis
    In:  African Journal of Marine Science, 32 (2). pp. 413-421.
    Details
    Publication Date: 2016-12-14
    Description: The annual winter sardine run along the South African east coast impacts the KwaZulu-Natal (KZN) coastal system in a variety of ways. These include ecological impacts, such as enrichment of a largely oligotrophic environment, competition between migrant sardine Sardinops sagax, other migrant and resident small pelagic fish species, and interactions with predators, as well as the socio-economic impacts of the sardine run on the local people. Enrichment of KZN coastal waters with organic nitrogen contained within the sardine is compared with alternative sources of nitrogen such as upwelling, river, sewage and stormwater runoff, and groundwater discharge. The sardine run appears to contribute most nitrogen to this system—96 000 t compared to 500–3 300 t for each of the other significant sources at trophic level 2, although upwelling estimates are extremely wide. Nonetheless, the majority of surviving sardine, their young and predators return southwards, suggesting that the nett export of nitrogen to KZN waters during the run is likely to be of a similar order of magnitude as that from other sources. Further, whereas the sardine supply of nitrogen is exclusively during winter, the bulk of the riverine input is in summer, thus ensuring that nitrogen supply in the region is maintained at fairly constant levels throughout the year. Competition for food between small pelagic fish is minimised by resource partitioning, but further dietary data are needed for resident species. Although interactions between sardine and top predators must exist, further studies are needed to confirm links between top predator life cycles and the sardine run. The estimated value of sardine as a tourist spectacle is compared to that from a seasonal beach-seine or boat-based purse-seine fishery for this species. Whereas the estimated value of the sardine as a tourist attraction appears substantially higher than could be derived from catching them, the small-scale beach-seine fishery itself draws tourists and also provides limited, seasonal employment opportunities.
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    Radiolarians from the surface sediment in Lindåspollene, Western Norway (1973)
    Taylor & Francis
    In:  Sarsia, 53 (1). pp. 71-75.
    Details
    Publication Date: 2020-05-28
    Description: Sixtytwo species of radiolarians have been found in surface sediment in Lindåspollene. Some of these are common in deep-sea sediments from tropical and subtropical latitudes. These warm-water radiolarians are believed to have been introduced during a warm, postglacial period.
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    PTP1B: a simple enzyme for a complex world (2013)
    Taylor & Francis
    In:  Critical Reviews in Biochemistry and Molecular Biology, 48 (5). pp. 430-445.
    Details
    Publication Date: 2020-07-29
    Description: Our understanding of the fundamental regulatory roles that tyrosine phosphatases play within cells has advanced significantly in the last two decades. Out-dated ideas that tyrosine phosphatases acts solely as the “off” switch counterbalancing the action of tyrosine kinases has proved to be flawed. PTP1B is the most characterized of all the tyrosine phosphatases and it acts as a critical negative and positive regulator of numerous signaling cascades. PTP1B’s direct regulation of the insulin and the leptin receptors makes it an ideal therapeutic target for type II diabetes and obesity. Moreover, the last decade has also seen several reports establishing PTP1B as key player in cancer serving as both tumor suppressor and tumor promoter depending on the cellular context. Despite many key advances in these fields one largely ignored area is what role PTP1B may play in the modulation of immune signaling. The important recognition that PTP1B is a major negative regulator of Janus kinase – signal transducer and activator of transcription (JAK-STAT) signaling throughout evolution places it as a key link between metabolic diseases and inflammation, as well as a unique regulator between immune response and cancer. This review looks at the emergence of PTP1B through evolution, and then explore at the cell and systemic levels how it is controlled physiologically. The second half of the review will focus on the role(s) PTP1B can play in disease and in particular its involvement in metabolic syndromes and cancer. Finally we will briefly examine several novel directions in the development of PTP1B pharmacological inhibitors.
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    Sexual reproduction in four Caribbean commercial sponges. I. Reproductive cycles and spermatogenesis (1991)
    Taylor & Francis
    In:  Invertebrate Reproduction & Development, 19 (1). pp. 1-11.
    Details
    Publication Date: 2017-02-01
    Description: Sexual reproductive cycles of a Florida, U.S.A., population of four Caribbean commercial sponge species, Hippospongia lachne, Spongia barbara, S. cheiris and S. graminea, were determined by analysis of tissue samples collected over a three-year period. Spermatogenesis in these species was studied using light and transmission electron microscopy. The production of male gametes occurs in cysts within the endosomal tissue of mature specimens. Reproductive elements within an individual cyst develop synchronously while development between cysts is asynchronous. All available evidence suggests that these species are dioecious. Spermatogonia differentiate directly from choanocytes in situ. All cells of the chamber lose their collars and flagella and undergo mitosis to produce primary spermatocytes, each possessing a single flagellum. The ratio of nucleus to cell diameter in these cells is almost double that of choanocytes. Circumstantial evidence suggests that primary spermatocytes undergo meiosis to produce four spermatids, but confirmational chromatid linkage figures are still lacking. The mature spermatozoa lack both intermediate segments and acrosomes. Male gametes displayed a bright yellow-white autofluorescence when excited with blue light (460–485 nm).
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    Influence of positional accuracy, sample size and scale on modelling species distributions: a review (2012)
    Taylor & Francis
    In:  International Journal of Geographical Information Science, 26 (11). pp. 2083-2095.
    Details
    Publication Date: 2020-07-28
    Description: Species distribution models (SDMs) are an important tool in biogeography and ecology and are widely used for both fundamental and applied research purposes. SDMs require spatially explicit information about species occurrence and environmental covariates to produce a set of rules that identify and scale the environmental space where the species was observed and that can further be used to predict the suitability of a site for the species. More spatially accurate data are increasingly available, and the number of publications on the influence of spatial inaccuracies on the performance of modelling procedures is growing exponentially. Three main sources of uncertainty are associated with the three elements of a predictive function: the dependent variable, the explanatory variables and the algorithm or function used to relate these two variables. In this study, we review how spatial uncertainties influence model accuracy and we propose some methodological issues in the application of SDMs with regard to the modelling of fundamental and realized niches of species. We distinguish two cases suitable for different types of spatial data accuracy. For modelling the realized distribution of a species, particularly for management and conservation purposes, we suggest using only accurate species occurrence data and large sample sizes. Appropriate data filtering and examination of the spatial autocorrelation in predictors should be a routine procedure to minimize the possible influence of positional uncertainty in species occurrence data. However, if the data are sparse, models of the potential distribution of species can be created using a relatively small sample size, and this can provide a generalized indication of the main regional drivers of the distribution patterns. By this means, field surveys can be targeted to discover unknown populations and species in poorly surveyed regions in order to improve the robustness of the data for later modelling of the realized distributions. Based on this review, we conclude that (1) with data that are currently available, studies performed at a resolution of 1–100 km2 are useful for hypothesizing about the environmental conditions that limit the distribution of a species and (2) incorporating coarse resolution species occurrence data in a model, despite an increase in sample size, lowers model performance.
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    Food of squidLoligo vulgaris reynaudii(Cephalopoda: Loliginidae) on their spawning grounds off the Eastern Cape, South Africa (1991)
    Taylor & Francis
    In:  South African Journal of Marine Science, 10 (1). pp. 193-201.
    Details
    Publication Date: 2020-05-26
    Description: Squid on their spawning grounds feed mainly at night when they are more dispersed. In all, 28,5 per cent of squid sampled at night had food in their stomachs, whereas only 6,7 per cent of those collected by day had food. Most stomachs contained only a single prey species (90,8% of those analysed). Teleosts dominated the prey of squid collected at night (58%M), followed by crustaceans (25%), polychaetes (9%) and cephalopods (3%). By day the prey was dominated by cephalopods (61%), followed by teleosts (20%), crustaceans (14%) and polychaetes (2%). Bregmaceros sp. was the most frequently identified teleost, Loligo vulgaris reynaudii (cannibalism) the dominant cephalopod, ?Betaeus sp. (Alpheidae; pieces of coral were also found) the commonest crustacean and Nereis sp. the commonest polychaete. There were seasonal differences in the diet too: squid caught during summer seemed to have similar proportions of the four main prey components. Also, the incidence of feeding was higher than in winter. There were, however, no significant differences in stomach mass expressed as a percentage of body mass between day and night nor between season nor between sexes. The average stomach mass of all samples was 0,6 per cent of body mass, less than on the feeding grounds, where it is generally about 2 per cent.
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    Abundance and distribution of rhynchoteuthion larvae ofIllex argentlnus(Cephalopoda: Ommastrephidae) in the south-western Atlantic (1992)
    Taylor & Francis
    In:  South African Journal of Marine Science, 12 (1). pp. 927-941.
    Details
    Publication Date: 2020-05-26
    Description: The results of ichthyoplankton surveys carried out by the Instituto Nacional de Pesca (INAPE) in the Argentine–Uruguayan Common Fishing Zone (AUCFZ) in summer 1980 and the winters of 1980–1982 are presented. In addition, the results of joint research with INIDEP, the Argentine and Japan Fisheries Agency, on larvae, juveniles and adults of the short-finned squid Illex argentinus carried out in winter 1989 are given, as are data obtained during the joint sardine and anchovy recruitment project carried out by R.V. Meteor in November/December 1989. The short-finned squid Illex argentinus is the most important cephalopod resource of the area, and an extended fishery is carried out on the Patagonian shelf and in the proximity of the Falkland Islands. The fishing season in the AUCFZ, for pre-spawning and spawning animals, extends from early autumn to winter (March–August). Abundance of rhynchoteuthion larvae (417–485 larvae·10 m−2) was greatest in winter in surface temperatures of 12,1–16,9°C and surface salinities of 34,8 – 35,2 × 10−3. The distribution of the larvae is related to the western boundary of the Brazil Current and the convergence front.
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    Biological and chemical diversity in Antarctica: from new species to new natural products (2016)
    Taylor & Francis
    In:  Biodiversity, 17 (1-2). pp. 5-11.
    Details
    Publication Date: 2017-03-31
    Description: Antarctica is a still unexplored area in many respects, among which biological diversity and, even more so, chemical diversity are important challenges. Over recent years, our research group has been studying marine benthic ecosystems in different Antarctic areas. These studies yielded several interesting discoveries, including species new to science, as well as new natural products never seen before. Overall, we have been trying to unravel the complex network of interactions that exist between marine benthic organisms in these cold and hardly accessible ecosystems. We present here an overview of our recent results regarding the biological and the chemical diversity of these organisms. In fact, these ecosystems are as complex as many other marine environments on the planet, and indeed, many questions remain yet to be answered.
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    Parasite Selection for Immunogenetic Optimality (2003)
    American Association for the Advancement of Science (AAAS)
    In:  Science, 301 (5638). p. 1343.
    Details
    Publication Date: 2017-03-31
    Description: In vertebrates, genes of the major histocompatibility complex (MHC), with their pronounced polymorphism, potentially represent outstanding examples for the selective advantages of genetic diversity (1). Theoretical models predicted that, within an individual, MHC alleles can be subjected to two opposing selective forces, resulting in an optimal number of genes at intermediate individual MHC diversity (2, 3). Diversifying selection increases heterozygosity and enables wider recognition of pathogens (4). This process is opposed by the need to delete T cells that react with self peptide–MHC combinations (5) from the repertoire, which has been proposed as a possible mechanism constraining expansion of MHC genes. Because too high MHC diversity might delimit T cell diversity, it might also impose limitations on the efficiency of pathogen recognition. However, empirical evidence demonstrating fitness benefits in terms of parasite resistance caused by this type of optimal MHC diversity has been lacking. Therefore, we tested whether three-spined sticklebacks (Gasterosteus aculeatus L.) carrying an intermediate level of individual MHC diversity also displayed the strongest level of resistance against parasite infection. Sticklebacks are particularly suited to test MHC optimality, because MHC class II genotypes can differ markedly in the number of MHC class IIB alleles (6). We caught fish from an outbred population and used these to breed six sibships of immunologically naïve fish (i.e., they had no previous contact to parasites). Immunogenetic diversity ranged from three to nine MHC class IIB alleles found in reverse-transcribed messenger RNA (mRNA) [see (6) for details on genotyping]. The MHC genotypes within these sibships segregated above and below the hypothesized optimal number of ∼5 MHC class IIB alleles, which had previously been estimated in an epidemiological field survey (7). In individual infection treatments, fish from all sibships were simultaneously exposed to three of the most abundant parasite species identified in the field (Fig. 1A) (8). After two rounds of infection, separated by an interval of 8 weeks, we found a significant minimal mean infection rate at an intermediate number of individual MHC class IIB variants [i.e., 5.82 expressed alleles (Fig. 1B)]. This result was also confirmed when sibships were considered separately [i.e., 4.96 alleles (Fig. 1C)] (9). The strong pattern only appeared when infection with all three parasites was accounted for simultaneously. This may not be surprising, because single alleles are expected to correlate with single diseases and multiple alleles can contribute to resistance against several infectious agents (2).
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  • 81
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    Parasite Selection for Immunogenetic Optimality (2003)
    American Association for the Advancement of Science (AAAS)
    In:  Science, 301 (5638). p. 1343.
    Details
    Publication Date: 2017-12-14
    Description: In vertebrates, genes of the major histocompatibility complex (MHC), with their pronounced polymorphism, potentially represent outstanding examples for the selective advantages of genetic diversity (1). Theoretical models predicted that, within an individual, MHC alleles can be subjected to two opposing selective forces, resulting in an optimal number of genes at intermediate individual MHC diversity (2, 3). Diversifying selection increases heterozygosity and enables wider recognition of pathogens (4). This process is opposed by the need to delete T cells that react with self peptide–MHC combinations (5) from the repertoire, which has been proposed as a possible mechanism constraining expansion of MHC genes. Because too high MHC diversity might delimit T cell diversity, it might also impose limitations on the efficiency of pathogen recognition. However, empirical evidence demonstrating fitness benefits in terms of parasite resistance caused by this type of optimal MHC diversity has been lacking. Therefore, we tested whether three-spined sticklebacks (Gasterosteus aculeatus L.) carrying an intermediate level of individual MHC diversity also displayed the strongest level of resistance against parasite infection. Sticklebacks are particularly suited to test MHC optimality, because MHC class II genotypes can differ markedly in the number of MHC class IIB alleles (6). We caught fish from an outbred population and used these to breed six sibships of immunologically naïve fish (i.e., they had no previous contact to parasites). Immunogenetic diversity ranged from three to nine MHC class IIB alleles found in reverse-transcribed messenger RNA (mRNA) [see (6) for details on genotyping]. The MHC genotypes within these sibships segregated above and below the hypothesized optimal number of ∼5 MHC class IIB alleles, which had previously been estimated in an epidemiological field survey (7). In individual infection treatments, fish from all sibships were simultaneously exposed to three of the most abundant parasite species identified in the field (Fig. 1A) (8). After two rounds of infection, separated by an interval of 8 weeks, we found a significant minimal mean infection rate at an intermediate number of individual MHC class IIB variants [i.e., 5.82 expressed alleles (Fig. 1B)]. This result was also confirmed when sibships were considered separately [i.e., 4.96 alleles (Fig. 1C)] (9). The strong pattern only appeared when infection with all three parasites was accounted for simultaneously. This may not be surprising, because single alleles are expected to correlate with single diseases and multiple alleles can contribute to resistance against several infectious agents (2).
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    The missing half of the subduction factory: shipboard results from the Izu rear arc, IODP Expedition 350 (2017)
    Taylor & Francis
    In:  International Geology Review, 59 (13). pp. 1677-1708.
    Details
    Publication Date: 2020-02-06
    Description: IODP Expedition 350 was the first to be drilled in the rear part of the Izu-Bonin, although several sites had been drilled in the arc axis to fore-arc region; the scientific objective was to understand the evolution of the Izu rear arc, by drilling a deep-water volcaniclastic section with a long temporal record (Site U1437). The Izu rear arc is dominated by a series of basaltic to dacitic seamount chains up to ~100-km long roughly perpendicular to the arc front. Dredge samples from these are geochemically distinct from arc front rocks, and drilling was undertaken to understand this arc asymmetry. Site U1437 lies in an ~20-km-wide basin between two rear arc seamount chains, ~90-km west of the arc front, and was drilled to 1804 m below the sea floor (mbsf) with excellent recovery. We expected to drill a volcaniclastic apron, but the section is much more mud-rich than expected (~60%), and the remaining fraction of the section is much finer-grained than predicted from its position within the Izu arc, composed half of ashes/tuffs, and half of lapilli tuffs of fine grain size (clasts 〈3 cm). Volcanic blocks (〉6.4 cm) are only sparsely scattered through the lowermost 25% of the section, and only one igneous unit was encountered, a rhyolite peperite intrusion at ~1390 mbsf. The lowest biostratigaphic datum is at 867 mbsf (~6.5 Ma), the lowest palaeomagnetic datum is at ~1300 mbsf (~9 Ma), and the rhyolite peperite at ~1390 mbsf has yielded a U–Pb zircon concordia intercept age of (13.6 + 1.6/−1.7) Ma. Both arc front and rear arc sources contributed to the fine-grained (distal) tephras of the upper 1320 m, but the coarse-grained (proximal) volcaniclastics in the lowest 25% of the section are geochemically similar to the arc front, suggesting arc asymmetry is not recorded in rocks older than ~13 Ma.
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    Population-Size and Breeding Success of Emperor Penguins Aptenodytes forsteriat Auster and Taylor Glacier Colonies, Mawson Coast, Antarctica (1992)
    Taylor & Francis
    In:  Emu, 92 (2). pp. 65-71.
    Details
    Publication Date: 2020-07-31
    Description: The population size and breeding success of Emperor Penguins Aptenodytes forsteri at the Auster and Taylor Glacier colonies were estimated during the 1988 breeding season. At Auster a total of 10 963 pairs produced about 6350 fledglings for a breeding success of 58%. At Taylor Glacier about 2900 pairs raised 1774 fledglings for a breeding success of 61%. Fledglings left Taylor Glacier over a period of 33 days at a mean mass of 10.56 kg.
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  • 84
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    Sexual maturation in squid: quantum or continuum? (1995)
    Taylor & Francis
    In:  South African Journal of Marine Science, 15 (1). pp. 207-223.
    Details
    Publication Date: 2020-05-26
    Description: A model is presented which tests the representation of the maturity process in terms of gonadosomatic indices (GSI) in chokka squid Loligo vulgaris reynaudii. It assumes that the true maturation process is reflected by the results of histological investigation, which cannot be used in large-scale ecological work in the field. However, the maturity scales used in ecological studies define some morphological categories which can be linked directly to microscopic development. Therefore, the overlap of GSI ranges for each morphological maturity category may be used to judge how well the GSIs represent the histological stages. Results have shown that the overlap is large and that GSI cannot be recommended as adequately reflecting the maturation process in squid. A morphological scale of maturity with possible broad applications in exploited families of squid is proposed as a better representation of the maturation process than GSI.
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  • 85
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    Descriptions of the paralarvae of two loliginid squids in southern African waters (1995)
    Taylor & Francis
    In:  South African Journal of Marine Science, 15 (1). pp. 1-7.
    Details
    Publication Date: 2020-05-26
    Description: Morphological differences between paralarvae of two loliginid squid species common in southern African waters (Loligo vulgaris reynaudii and Lolliguncula mercatoris) are described. The differences are: Loligo — "cheek patches" consisting of four dark chromatophores, nine large dark dorsal chromatophores on the mantle, tentacular clubs broad and much wider than tentacle stalks, proximal row of three club suckers with others tetraserial, suckers large enough to appear crowded on the club surface; Lolliguncula — "cheek patches" with three dark chromatophores, two pairs of" large, dark dorsal chromatophores on the mantle, tentacular clubs narrow, proximal club suckers arranged in three pairs, suckers small, not particularly crowded. Relationships with other myopsids are briefly discussed.
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  • 86
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    Challenges and strategies for the visual exploration of complex environmental data (2017)
    Taylor & Francis
    In:  International Journal of Digital Earth, 10 (10). pp. 1070-1076.
    Details
    Publication Date: 2020-02-06
    Description: In this opinion paper, we, a group of scientists from environmental-, geo-, ocean- and information science, argue visual data exploration should become a common analytics approach in Earth system science due to its potential for analysis and interpretation of large and complex spatio-temporal data. We discuss the challenges that appear such as synthesis of heterogeneous data from various sources, reducing the amount of information and facilitating multidisciplinary, collaborative research. We argue that to fully exploit the potential of visual data exploration, several bottlenecks and challenges have to be addressed: providing an efficient data management and an integrated modular workflow, developing and applying suitable visual exploration concepts and methods with the help of effective and tailored tools as well as generating and raising the awareness of visual data exploration and education. We are convinced visual data exploration is worth the effort since it significantly facilitates insight into environmental data and derivation of knowledge from it.
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  • 87
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    Rediscovery of Cereopsis studeri Koch, 1891, a forgotten Mediterranean soft coral species, and its inclusion in the genus Nidalia Gray, 1835 (Octocorallia, Alcyonacea, Nidaliidae) (2012)
    Taylor & Francis
    In:  Marine Biology Research, 8 (7). pp. 594-604.
    Details
    Publication Date: 2017-06-20
    Description: Cereopsis studeri was described by G. von Koch in 1891 with material from Naples. However, it was subsequently synonymized, erroneously identified, and overlooked in subsequent soft coral literature of the twentieth century. After the original description, this species was not recorded or correctly described for 120 years. The study of newly collected material from the North Western Mediterranean permits the re-description of this forgotten species and its assignation to the genus Nidalia in the family Nidaliidae. The main features of Nidalia studeri com. nov. are: colony torch-like, a capitulum light orange in colour, not laterally flattened, dome-shaped and not distinctly projecting beyond the stalk, introvert with sclerites transversally placed in two longitudinal rows per interseptal space, anthocodial crown with 28–38 sclerite rows, points separated from polyps distally, formed by 6–9 pairs of sclerites, and the presence of intermediate points (secondary points) between principal (interseptal) ones. Nidalia studeri is here compared with its closest congeners, especially with the Indonesian species N. simpsoni, species from the West Indian Region N. dissidens, N.occidentalis, N. deichmannae, and the recently described Nidalia aurantia from the Mid-Atlantic Ocean. This is the first time that the genus Nidalia and the family Nidaliidae have been reported with certainty for the Mediterranean Sea.
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    Histological investigation of organisms with hard skeletons: a case study of siliceous sponges (2003)
    Taylor & Francis
    In:  Biotechnic & Histochemistry, 78 (3-4). pp. 191-199.
    Details
    Publication Date: 2017-06-27
    Description: Siliceous and calcareous sponges commonly are treated with acid to remove the spicules prior to embedding and cutting for histological investigations. Histology of spiculated sponge tissue represents a challenging problem in sponge histotechnology. Furthermore, fluorescence in situ hybridization (FISH), a key method for studying sponge-associated microbes, is not possible after acid treatment. For a broad range of siliceous sponge species, we developed and evaluated methods for embedding in paraffin, methylmethacrylate resins, LR White resin and cryomatrix. Different methods for cutting tissue blocks as well as mounting and staining sections also were tested. Our aim was to enable histological investigations and FISH without prior removal of the spicules. To obtain an overview of tissue and skeleton arrangement, we recommend embedding tissue blocks with LR White resin combined with en bloc staining techniques for large specimens with thick and numerous spicules, but paraffin embedding and subsequent staining for whole small specimens. For FISH on siliceous sponges, we recommend Histocryl embedding if the spicule content is high, but paraffin embedding if it is low. Classical histological techniques are used for detailed tissue examinations.
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    A review: carbon dioxide capture: biomass-derived-biochar and its applications (2013)
    Taylor & Francis
    In:  Journal of Dispersion Science and Technology, 34 (7). pp. 974-984.
    Details
    Publication Date: 2017-09-25
    Description: The changes in global temperatures as a result of carbon dioxide (CO2) emissions has suggested that cumulative CO2 emissions will continue to increase over time. Many countries are looking for ways to reduce or alter the amount of CO2 harming our environment; therefore, this review is a compilation of CO2 adsorption on biomass-derived-biochar (BDB). This suggests that effective measures to mitigate the risk of dangerous climate change will need to limit cumulative emissions of CO2. Further, if cumulative CO2 emissions overshoot acceptable limits, it will become necessary to remove CO2 from the air, that is, the so-called “negative emissions.” In this review, we discuss the definitions and classes of technologies for capturing CO2 from the air and the application of biochar in the improvement of soil fertility. We also discuss the economic tradeoff between biochar and bio-oil, agricultural nutrient leaching, the novel magnetic property of biochar and its durability.
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  • 90
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    Cadmium in Zinc Deposits: Economic Geology of a Polluting Element (2000)
    Taylor & Francis
    In:  International Geology Review, 42 . pp. 445-469.
    Details
    Publication Date: 2017-09-29
    Description: The chief host of cadmium in zinc deposits is sphalerite, the cadmium content of which depends on the type of deposit. Sphalerite from Mississippi Valley-type (MVT) deposits has high cadmium concentrations whereas sphalerite from exhalative deposits has low cadmium concentrations. The Cd content of sphalerite depends on the Cd/Zn ratio, ligand activities, and temperature of the ore-forming fluids. The combined effect of variation of temperature, pH, total activity of reduced sulfur, and activity of Cl- cannot by itself account for either Cd depletion (exhalative deposits) or Cd enrichment (MVT deposits). Variations in the Cd/Zn ratio of the fluid have a significant effect in determining that of sphalerite. Basinal brines, which can considered to be the recent equivalents of MVT fluids, have high Cd/Zn ratios, and active exhalative systems are characterized by low Cd/Zn ratios. Probably the differences in sphalerite composition between the different deposit types are less a function of temperature and ligand activities than Cd/Zn ratio of the ore-forming fluids. In the hydrothermal environment, the Cd/Zn ratio is generally not high enough to allow crystallization of cadmium sulfides (greenockite or hawleyite). The abundance of greenockite in the supergene alteration zone of hydrothermal zinc deposits can be explained on the basis of Zn scavenging by crystallizing smithsonite.
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  • 91
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    Three new compounds from the marine-derived fungusTrichoderma atrovirideG20-12 (2012)
    Taylor & Francis
    In:  Journal of Asian Natural Products Research, 14 (7). pp. 647-651.
    Details
    Publication Date: 2018-01-24
    Description: Three new compounds, 4′-(4,5-dimethyl-1,3-dioxolan-2-yl)methyl-phenol (1), (3′-hydroxybutan-2′-yl)5-oxopyrrolidine-2-carboxylate (2), and atroviridetide (3), have been isolated from the marine-derived fungus Trichoderma atroviride G 20-12. Their structures were determined on the basis of chemical and spectroscopic methods.
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  • 92
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    Estimates of Cenozoic Oceanic Sedimentation Rates (1977)
    American Association for the Advancement of Science (AAAS)
    In:  Science, 197 (4298). pp. 53-55.
    Details
    Publication Date: 2018-02-07
    Description: Estimation of average Cenozoic sedimentation rates for the Atlantic, Indian, and Pacific oceans indicates global synchronous fluctuations. Paleocene-early Eocene and late Eocene-early Miocene rates are only a fraction of middle Eocene and middle Miocene-Recent rates. These changes must reflect significantly different modes of continental weathering, which may be due to alternate states of atmospheric circulation marked by reduction of global precipitation.
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  • 93
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    Do hexactinellids structure antarctic sponge associations? (1992)
    Taylor & Francis
    In:  Ophelia, 36 (2). pp. 111-118.
    Details
    Publication Date: 2018-03-01
    Description: This paper presents an idea on the possible structuring effect of hex actinellids on Antarctic sponge associations. To this end, information derived from underwater photography performed on the eastern Weddell Sea shelf is reported and original trawl data are presented. Underwater photography shows the existence of different sponge associations; species poor associations are connected to soft bottom, species rich associations exist on substrates characterized by bryozoan debris and especially sponge spicule mats. The trawl. catches show differences in the population structure of a hexactinellid sponge, Rassella racovitzae Topsent at two stations, distinguishable from each other by substrate structure. On average small and therefore probably young specimens were found on bryozoan debris, while a population with larger and probably older specimens was found on solid hexactinellid spicule mats. These observations form the basis for the hypothesis that hexactinellid sponges are a major biological structuring agent for Antarctic sponge associations; they colonize soft substrate and bryozoan debris dominated areas and subsequently change the quality of the substrate by spicule deposition. The ensuing spicule mats are a suitable settling ground for a large number of demosponge species dependent on hard substrates. Mass occurrences of hexactinellids are also found in areas other than Antarctica. The phenomenon recognized in the Weddell Sea probably occurs more widely spread.
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    A method for the detection of clouds using AVHRR infrared observations (1992)
    Taylor & Francis
    In:  International Journal of Remote Sensing, 13 (10). pp. 1829-1841.
    Details
    Publication Date: 2018-03-09
    Description: A method is proposed for cloud detection over sea using a single infrared channel of a high spatial resolution satellite radiometer. The method combines a spatial coherence test and an absolute threshold test for the temperature field. The threshold for the second test is automatically determined by a histogram analysis of data which were preselected by the coherence test. The coherence test used differs from the classical standard deviation test in the way of the test value computation: the weight of the pixel to be investigated is increased. A simulation shows that under conditions of low cloud cover this makes the proposed coherence test more sensitive than the standard deviation test. When applied to real data the test was also found to be very sensitive compared with visible and IR threshold tests. Cloud cover obtained by the whole method is finally compared with that resulting from the visible and IR histogram analysis procedure of Phulpin et al. This comparison indicates a high reliability of the proposed method.
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    Gammarid amphipods and littorinid snails have significant but different effects on algal succession in littoral fringe tidepools (1993)
    Taylor & Francis
    In:  Ophelia, 38 (2). pp. 69-88.
    Details
    Publication Date: 2018-03-22
    Description: Tests on the effects of two herbivore groups (littorinid snails and gammarid amphipods), on algal succession in high intertidal tidepools dominated by Fucus distichus showed that the grazer groups exert different grazing pressures on the algae. The differences can be related to the feeding morphologies ofthe two grazer guilds. The scraping, microphagous littorinid snails prevent the establishment of both micro- and rnacroalgae at the microscopic level. The biting, macrophagous gammarid amphipods are ineffective at grazing microalgae and prostrate macroalgae from the substratum, but exert a considerable influence on the erect macroalgae which escape littorinid grazing. Despite differences in feeding mechanisms, the magnitude of the effect of the two grazer groups on the canopy cover of macroalgae is similar.
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    Bias-corrected random forests in regression (2012)
    Taylor & Francis
    In:  Journal of Applied Statistics, 39 (1). pp. 151-160.
    Details
    Publication Date: 2018-07-13
    Description: It is well known that random forests reduce the variance of the regression predictors compared to a single tree, while leaving the bias unchanged. In many situations, the dominating component in the risk turns out to be the squared bias, which leads to the necessity of bias correction. In this paper, random forests are used to estimate the regression function. Five different methods for estimating bias are proposed and discussed. Simulated and real data are used to study the performance of these methods. Our proposed methods are significantly effective in reducing bias in regression context.
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    Determination of Soil Parameters to Analyze Mechanical Behavior Using Lade's Double-Surface Work-Hardening Model (2016)
    Taylor & Francis
    In:  Marine Georesources & Geotechnology, 34 (5). pp. 465-473.
    Details
    Publication Date: 2019-02-01
    Description: In this study, Lade's double-surface work-hardening constitutive model was adopted which uses the elasto-plasticity model as a basic conceptual framework. The model can analyze work hardening and work softening of nonlinear stress-strain behavior, and is regarded as superior to other elasto-plasticity constitutive models in terms of estimation. In the double-surface work-hardening constitutive model, 14 soil parameters are needed to estimate soil behaviors. To determine them, laboratory tests—isotropical consolidation test and conventional compression test—were conducted. Determining of soil parameters is highly complicated and time-consuming; randomness cannot be ruled out in determining parameters that are sensitive to stress-strain estimation, and error may occur. For this reason, a linear and nonlinear regression analysis was used to determine soil parameters. In estimation of undrained behavior, the estimated stress-strain behavior based on the two constitutive models largely overlapped with the test results. However, in estimating drained behavior, the outcome of the two models and the test results were mostly the same, but between the two models, the double-surface work-hardening constitutive model had a sharper slope in initial stress state, and a smaller maximum deviatoric stress.
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    Reproductive biology of the shore crabCarcinus maenas(Decapoda, Portunidae): a macroscopic and histological view (2012)
    Taylor & Francis
    In:  Invertebrate Reproduction & Development, 56 (2). pp. 144-156.
    Details
    Publication Date: 2018-04-11
    Description: A histological study of the reproductive cycle of male and female shore crabs, Carcinus maenas (Linnaeus), was performed monthly on the South West coast of Ireland (from December 2006 to July 2008). The calculated sex ratio deviated from equality, 1:0.53, revealing a strong male bias. A system was devised, based on screening of tissue sections, to describe and stage gametogenic development. Histological examinations revealed that ovarian development occurred biannually, with a primary winter cycle in which the larger crabs reproduced and a secondary summer cycle, when smaller crabs reproduced. An association was observed where more of the larger specimens were caught in the summer months and the smaller specimens in the winter months, which inversely correlated with the segregated breeding cycles. There was strong evidence that mature male crabs could potentially copulate year round since all mature specimens, collected throughout the year, contained viable spermatozoa. Developmental stages of oogenesis and spermatogenesis were described to develop a practical gonadal index for this portunid crab, providing information on the biology of this species, which will be of benefit for fisheries management.
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    Water-body preferences of dominant calanoid copepod species in the Angola-Benguela frontal zone (2005)
    Taylor & Francis
    In:  African Journal of Marine Science, 27 (3). pp. 597-608.
    Details
    Publication Date: 2018-04-11
    Description: The distribution of five dominant calanoid copepods was related to different water masses in the Angola-Benguela Front system. Five water bodies were identified by principal component analysis, on the basis of abiotic parameter such as temperature, salinity, dissolved oxygen, phosphate, silicate, nitrate and nitrite. These parameters were reduced to single factors and arranged along two principal component axes. The copepod species incuded females and copepodites C5 of Calanoides carinatus and females of Metridia lucens, Centropages brachiatus, Nannocalanus minor and Aetideopsis carinata. The water bodies identified in the frontal system were related to currents, upwelling processes, an oxygen minimum layer and biological modification. The different copepod species, as well as the two ontogenetic stages of C. carinatus, showed clear preference for specific water bodies, and their behavioural and physiological adaptations to the environment are discussed.
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    Force chain buckling, unjamming transitions and shear banding in dense granular assemblies (2007)
    Taylor & Francis
    In:  Philosophical Magazine, 87 (32). pp. 4987-5016.
    Details
    Publication Date: 2018-04-11
    Description: Force chain buckling, leading to unjamming and shear banding, is examined quantitatively via a discrete element analysis of a two-dimensional, densely-packed, cohesionless granular assembly subject to quasistatic, boundary-driven biaxial compression. A range of properties associated with the confined buckling of force chains has been established, including: degree of buckling, buckling modes, spatial and strain evolution distributions, and relative contributions to non-affine deformation, dilatation and decrease in macroscopic shear strength and potential energy. Consecutive cycles of unjamming–jamming events, akin to slip–stick events arising in other granular systems, characterize the strain-softening regime and the shear band evolution. Peaks in the dissipation rate, kinetic energy and local non-affine strain are strongly correlated: the largest peaks coincide with each unjamming event that is evident in the concurrent drops in the macroscopic shear stress and potential energy. Unjamming nucleates from the buckling of a few force chains within a small region inside the band. A specific mode of force chain buckling, prevalent in and confined to the shear band, leads to above-average levels of local non-affine strain and release of potential energy during unjamming. Ongoing studies of this and other buckling modes from a structural stability standpoint serve as the basis for the formulation of internal variables and associated evolution laws, central to the development of thermomicromechanical constitutive theory for granular materials.
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