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  • Nature Research  (47)
  • American Meteorological Society  (32)
  • American Chemical Society (ACS)
  • 2020-2023  (79)
  • 2020  (79)
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  • 1
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    Inter-annual decrease in pulse rate and peak frequency of Southeast Pacific blue whale song types (2020)
    Nature Research
    Details
    Publication Date: 2022-05-25
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Malige, F., Patris, J., Buchan, S. J., Stafford, K. M., Shabangu, F., Findlay, K., Hucke-Gaete, R., Neira, S., Clark, C. W., & Glotin, H. Inter-annual decrease in pulse rate and peak frequency of Southeast Pacific blue whale song types. Scientific Reports, 10(1), (2020): 8121, doi:10.1038/s41598-020-64613-0.
    Description: A decrease in the frequency of two southeast Pacific blue whale song types was examined over decades, using acoustic data from several different sources in the eastern Pacific Ocean ranging between the Equator and Chilean Patagonia. The pulse rate of the song units as well as their peak frequency were measured using two different methods (summed auto-correlation and Fourier transform). The sources of error associated with each measurement were assessed. There was a linear decline in both parameters for the more common song type (southeast Pacific song type n.2) between 1997 to 2017. An abbreviated analysis, also showed a frequency decline in the scarcer southeast Pacific song type n.1 between 1970 to 2014, revealing that both song types are declining at similar rates. We discussed the use of measuring both pulse rate and peak frequency to examine the frequency decline. Finally, a comparison of the rates of frequency decline with other song types reported in the literature and a discussion on the reasons of the frequency shift are presented.
    Description: The authors thank the help of Explorasub diving center (Chile), Agrupación turística Chañaral de Aceituno (Chile), ONG Eutropia (Chile), Valparaiso university (Chile), the international institutions and research programs CTBTO, IWC, BRILAM STIC AmSud 17-STIC-01. S.J.B. thanks support from the Center for Oceanographic Research COPAS Sur-Austral, CONICYT PIA PFB31, Biology Department of Woods Hole Oceanographic Institution, the Office of Naval Research Global (awards N62909-16-2214 and N00014-17-2606), and a grant to the Centro de Estudios Avanzados en Zonas Ãridas (CEAZA) “Programa Regional CONICYT R16A10003”. We thank SABIOD MI CNRS, EADM MaDICS CNRS and ANR-18-CE40-0014 SMILES supporting this research. We are grateful to colleagues at DCLDE 2018 and SOLAMAC 2018 conferences for useful comments on the preliminary version of this work. In this work we used only the free and open-source softwares Latex, Audacity and OCTAVE.
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  • 2
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    Representing the function and sensitivity of coastal interfaces in earth system models (2020)
    Nature Research
    Details
    Publication Date: 2022-05-25
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Ward, N. D., Megonigal, J. P., Bond-Lamberty, B., Bailey, V. L., Butman, D., Canuel, E. A., Diefenderfer, H., Ganju, N. K., Goni, M. A., Graham, E. B., Hopkinson, C. S., Khangaonkar, T., Langley, J. A., McDowell, N. G., Myers-Pigg, A. N., Neumann, R. B., Osburn, C. L., Price, R. M., Rowland, J., Sengupta, A., Simard, M., Thornton, P. E., Tzortziou, M., Vargas, R., Weisenhorn, P. B., & Windham-Myers, L. Representing the function and sensitivity of coastal interfaces in earth system models. Nature Communications, 11(1), (2020): 2458, doi:10.1038/s41467-020-16236-2.
    Description: Between the land and ocean, diverse coastal ecosystems transform, store, and transport material. Across these interfaces, the dynamic exchange of energy and matter is driven by hydrological and hydrodynamic processes such as river and groundwater discharge, tides, waves, and storms. These dynamics regulate ecosystem functions and Earth’s climate, yet global models lack representation of coastal processes and related feedbacks, impeding their predictions of coastal and global responses to change. Here, we assess existing coastal monitoring networks and regional models, existing challenges in these efforts, and recommend a path towards development of global models that more robustly reflect the coastal interface.
    Description: Funding for this work was provided by Pacific Northwest National Laboratory (PNNL) Laboratory Directed Research & Development (LDRD) as part of the Predicting Ecosystem Resilience through Multiscale Integrative Science (PREMIS) Initiative. PNNL is operated by Battelle for the U.S. Department of Energy under Contract DE-AC05-76RL01830. Additional support to J.P.M. was provided by the NSF-LTREB program (DEB-0950080, DEB-1457100, DEB-1557009), DOE-TES Program (DE-SC0008339), and the Smithsonian Institution. This manuscript was motivated by discussions held by co-authors during a three-day workshop at PNNL in Richland, WA: The System for Terrestrial Aquatic Research (STAR) Workshop: Terrestrial-Aquatic Research in Coastal Systems. The authors thank PNNL artist Nathan Johnson for preparing the figures in this manuscript and Terry Clark, Dr. Charlette Geffen, and Dr. Nancy Hess for their aid in organizing the STAR workshop. The authors thank all workshop participants not listed as authors for their valuable insight: Lihini Aluwihare (contributed to biogeochemistry discussions and development of concept for Fig. 3), Gautam Bisht (contributed to modeling discussion), Emmett Duffy (contributed to observational network discussions), Yilin Fang (contributed to modeling discussion), Jeremy Jones (contributed to biogeochemistry discussions), Roser Matamala (contributed to biogeochemistry discussions), James Morris (contributed to biogeochemistry discussions), Robert Twilley (contributed to biogeochemistry discussions), and Jesse Vance (contributed to observational network discussions). A full report on the workshop discussions can be found at https://www.pnnl.gov/publications/star-workshop-terrestrial-aquatic-research-coastal-systems.
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  • 3
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    Amplified seasonal cycle in hydroclimate over the Amazon river basin and its plume region (2020)
    Nature Research
    Details
    Publication Date: 2022-05-25
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Liang, Y., Lo, M., Lan, C., Seo, H., Ummenhofer, C. C., Yeager, S., Wu, R., & Steffen, J. D. Amplified seasonal cycle in hydroclimate over the Amazon river basin and its plume region. Nature Communications, 11(1), (2020): 4390, doi:10.1038/s41467-020-18187-0.
    Description: The Amazon river basin receives ~2000 mm of precipitation annually and contributes ~17% of global river freshwater input to the oceans; its hydroclimatic variations can exert profound impacts on the marine ecosystem in the Amazon plume region (APR) and have potential far-reaching influences on hydroclimate over the tropical Atlantic. Here, we show that an amplified seasonal cycle of Amazonia precipitation, represented by the annual difference between maximum and minimum values, during the period 1979–2018, leads to enhanced seasonalities in both Amazon river discharge and APR ocean salinity. An atmospheric moisture budget analysis shows that these enhanced seasonal cycles are associated with similar amplifications in the atmospheric vertical and horizontal moisture advections. Hierarchical sensitivity experiments using global climate models quantify the relationships of these enhanced seasonalities. The results suggest that an intensified hydroclimatological cycle may develop in the Amazonia atmosphere-land-ocean coupled system, favouring more extreme terrestrial and marine conditions.
    Description: M.-H.L., C.-W.L., and R.-J.W. are supported by the Ministry of Science and Technology in Taiwan under grant 106-2111-M-002-010-MY4. H.S. and J.D.S. are grateful for support from NOAA NA19OAR4310376 and NA17OAR4310255. C.C.U. acknowledges support from the U.S. National Science Foundation under grant OCE-1663704. The National Center for Atmospheric Research (NCAR) is a major facility sponsored by the US National Science Foundation (NSF) under Cooperative Agreement No. 1852977. We thank Dr. Young-Oh Kwon at Woods Hole Oceanographic Institution and Dr. Who Kim at NCAR for discussions about the ocean model experiment design. We thank Dr. Mehnaz Rashid at National Taiwan University and Wen-Yin Wu at the University of Texas at Austin in helping generate the high-resolution Amazon river mask. We also thank Dr. Gael Forget at Massachusetts Institue of Technology for comments on using ECCO and other ocean-state estimate products.
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  • 4
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    Latitudinal structure of the meridional overturning circulation variability on interannual to decadal time scales in the North Atlantic Ocean (2020)
    American Meteorological Society
    Details
    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2020. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Climate 33(9), (2020): 3845-3862, doi:10.1175/JCLI-D-19-0215.1.
    Description: The latitudinal structure of the Atlantic meridional overturning circulation (AMOC) variability in the North Atlantic is investigated using numerical results from three ocean circulation simulations over the past four to five decades. We show that AMOC variability south of the Labrador Sea (53°N) to 25°N can be decomposed into a latitudinally coherent component and a gyre-opposing component. The latitudinally coherent component contains both decadal and interannual variabilities. The coherent decadal AMOC variability originates in the subpolar region and is reflected by the zonal density gradient in that basin. It is further shown to be linked to persistent North Atlantic Oscillation (NAO) conditions in all three models. The interannual AMOC variability contained in the latitudinally coherent component is shown to be driven by westerlies in the transition region between the subpolar and the subtropical gyre (40°–50°N), through significant responses in Ekman transport. Finally, the gyre-opposing component principally varies on interannual time scales and responds to local wind variability related to the annual NAO. The contribution of these components to the total AMOC variability is latitude-dependent: 1) in the subpolar region, all models show that the latitudinally coherent component dominates AMOC variability on interannual to decadal time scales, with little contribution from the gyre-opposing component, and 2) in the subtropical region, the gyre-opposing component explains a majority of the interannual AMOC variability in two models, while in the other model, the contributions from the coherent and the gyre-opposing components are comparable. These results provide a quantitative decomposition of AMOC variability across latitudes and shed light on the linkage between different AMOC variability components and atmospheric forcing mechanisms.
    Description: The authors gratefully acknowledge support from the Physical Oceanography Program of the U.S. National Science Foundation (Awards OCE-1756143 and OCE-1537136) and the Climate Program Office of the National Oceanic and Atmospheric Administration (Award NA15OAR4310088). Gratitude is extended to Claus Böning and Arne Biastoch who shared ORCA025 output. S. Zou thanks F. Li, M. Buckley, and L. Li for helpful discussions. We also thank three anonymous reviewers for helpful suggestions.
    Keywords: Deep convection ; Ocean circulation ; Thermocline circulation
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  • 5
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    Ocean acidification disrupts the orientation of postlarval Caribbean spiny lobsters (2020)
    Nature Research
    Details
    Publication Date: 2022-05-25
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Gravinese, P. M., Page, H. N., Butler, C. B., Spadaro, A. J., Hewett, C., Considine, M., Lankes, D., & Fisher, S. Ocean acidification disrupts the orientation of postlarval Caribbean spiny lobsters. Scientific Reports, 10(1), (2020): 18092, doi:10.1038/s41598-020-75021-9.
    Description: Anthropogenic inputs into coastal ecosystems are causing more frequent environmental fluctuations and reducing seawater pH. One such ecosystem is Florida Bay, an important nursery for the Caribbean spiny lobster, Panulirus argus. Although adult crustaceans are often resilient to reduced seawater pH, earlier ontogenetic stages can be physiologically limited in their tolerance to ocean acidification on shorter time scales. We used a Y-maze chamber to test whether reduced-pH seawater altered the orientation of spiny lobster pueruli toward chemical cues produced by Laurencia spp. macroalgae, a known settlement cue for the species. We tested the hypothesis that pueruli conditioned in reduced-pH seawater would be less responsive to Laurencia spp. chemical cues than pueruli in ambient-pH seawater by comparing the proportion of individuals that moved to the cue side of the chamber with the proportion that moved to the side with no cue. We also recorded the amount of time (sec) before a response was observed. Pueruli conditioned in reduced-pH seawater were less responsive and failed to select the Laurencia cue. Our results suggest that episodic acidification of coastal waters might limit the ability of pueruli to locate settlement habitats, increasing postsettlement mortality.
    Description: We thank the Steinwachs Family Foundation, which provided funding that supported Gravinese’s postdoctoral fellowship at Mote Marine Laboratory and Aquarium. We also acknowledge the partial support provided by the St. Petersburg College Titan Achievement minigrant program. Page was supported by a Mote Marine Laboratory and Aquarium Postdoctoral Research Fellowship. Postlarval spiny lobsters were collected with a state-issued Special Activity License (SAL-17-1868G-SR). We also thank those who helped with animal collection throughout this work including in-kind support provided by E. Muller and the Mote CAOS facility, as well as E. Bartels and C. Walter of the Coral Reef Monitoring and Assessment Program at Mote Marine Laboratory and Aquarium, as well as other field personnel including: L. Toth, S. Perry, T. Parker, A. Fine, L. Humphrey, and many undergraduate interns. We also thank L. Toth, E. Ross, B. Sharp, C. Crowley, J. Butler, and B. Crowder for editorial comments.
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  • 6
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    Sources and upstream pathways of the densest overflow water in the Nordic Seas (2020)
    Nature Research
    Details
    Publication Date: 2022-05-25
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Huang, J., Pickart, R. S., Huang, R. X., Lin, P., Brakstad, A., & Xu, F. Sources and upstream pathways of the densest overflow water in the Nordic Seas. Nature Communications, 11(1), (2020): 5389, doi:10.1038/s41467-020-19050-y.
    Description: Overflow water from the Nordic Seas comprises the deepest limb of the Atlantic Meridional Overturning Circulation, yet questions remain as to where it is ventilated and how it reaches the Greenland-Scotland Ridge. Here we use historical hydrographic data from 2005-2015, together with satellite altimeter data, to elucidate the source regions of the Denmark Strait and Faroe Bank Channel overflows and the pathways feeding these respective sills. A recently-developed metric is used to calculate how similar two water parcels are, based on potential density and potential spicity. This reveals that the interior of the Greenland Sea gyre is the primary wintertime source of the densest portion of both overflows. After subducting, the water progresses southward along several ridge systems towards the Greenland-Scotland Ridge. Kinematic evidence supports the inferred pathways. Extending the calculation back to the 1980s reveals that the ventilation occurred previously along the periphery of the Greenland Sea gyre.
    Description: Funding for the study was provided by the US National Science Foundation under grants OCE-1558742 (J.H., R.P.) and OCE-1259618 (P.L.); the Bergen Research Foundation under grant BFS2016REK01 (A.B.); and the National Natural Science Foundation of China No. 41576018 (F.X.) and 41606020 (F.X.).
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  • 7
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    The role of suction thrust in the metachronal paddles of swimming invertebrates (2020)
    Nature Research
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    Publication Date: 2022-05-25
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Colin, S. P., Costello, J. H., Sutherland, K. R., Gemmell, B. J., Dabiri, J. O., & Du Clos, K. T. The role of suction thrust in the metachronal paddles of swimming invertebrates. Scientific Reports, 10(1), (2020): 17790, doi:10.1038/s41598-020-74745-y.
    Description: An abundance of swimming animals have converged upon a common swimming strategy using multiple propulsors coordinated as metachronal waves. The shared kinematics suggest that even morphologically and systematically diverse animals use similar fluid dynamic relationships to generate swimming thrust. We quantified the kinematics and hydrodynamics of a diverse group of small swimming animals who use multiple propulsors, e.g. limbs or ctenes, which move with antiplectic metachronal waves to generate thrust. Here we show that even at these relatively small scales the bending movements of limbs and ctenes conform to the patterns observed for much larger swimming animals. We show that, like other swimming animals, the propulsors of these metachronal swimmers rely on generating negative pressure along their surfaces to generate forward thrust (i.e., suction thrust). Relying on negative pressure, as opposed to high pushing pressure, facilitates metachronal waves and enables these swimmers to exploit readily produced hydrodynamic structures. Understanding the role of negative pressure fields in metachronal swimmers may provide clues about the hydrodynamic traits shared by swimming and flying animals.
    Description: This work was funded by National Science Foundation (NSF OCE 1829913 to SPC), the Alfred P. Sloan Foundation (to BJG) and the Gordon and Betty Moore Foundation (8835 to KRS). The work was also supported by the Roger Williams Foundation to Promote Scholarship and Teaching.
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  • 8
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    Importance of Orography for Greenland cloud and melt response to atmospheric blocking (2020)
    American Meteorological Society
    Details
    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2020. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Hahn, L. C., Storelvmo, T., Hofer, S., Parfitt, R., & Ummenhofer, C. C. Importance of Orography for Greenland cloud and melt response to atmospheric blocking. Journal of Climate, 33(10), (2020): 4187-4206, doi:10.1175/JCLI-D-19-0527.1.
    Description: More frequent high pressure conditions associated with atmospheric blocking episodes over Greenland in recent decades have been suggested to enhance melt through large-scale subsidence and cloud dissipation, which allows more solar radiation to reach the ice sheet surface. Here we investigate mechanisms linking high pressure circulation anomalies to Greenland cloud changes and resulting cloud radiative effects, with a focus on the previously neglected role of topography. Using reanalysis and satellite data in addition to a regional climate model, we show that anticyclonic circulation anomalies over Greenland during recent extreme blocking summers produce cloud changes dependent on orographic lift and descent. The resulting increased cloud cover over northern Greenland promotes surface longwave warming, while reduced cloud cover in southern and marginal Greenland favors surface shortwave warming. Comparison with an idealized model simulation with flattened topography reveals that orographic effects were necessary to produce area-averaged decreasing cloud cover since the mid-1990s and the extreme melt observed in the summer of 2012. This demonstrates a key role for Greenland topography in mediating the cloud and melt response to large-scale circulation variability. These results suggest that future melt will depend on the pattern of circulation anomalies as well as the shape of the Greenland Ice Sheet.
    Description: This research was supported by the Woods Hole Oceanographic Institution Summer Student Fellow program, by the U.S. National Science Foundation under AGS-1355339 to C.C.U., and by the European Research Council through Grant 758005.
    Keywords: Ice sheets ; Blocking ; Cloud cover ; Topographic effects ; Climate change ; Climate variability
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  • 9
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    CRISPR/Cas9 mediated mutation of the mtnr1a melatonin receptor gene causes rod photoreceptor degeneration in developing Xenopus tropicalis (2020)
    Nature Research
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    Publication Date: 2022-05-25
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Wiechmann, A. F., Martin, T. A., & Horb, M. E. CRISPR/Cas9 mediated mutation of the mtnr1a melatonin receptor gene causes rod photoreceptor degeneration in developing Xenopus tropicalis. Scientific Reports, 10(1), (2020): 13757, doi:10.1038/s41598-020-70735-2.
    Description: Nighttime surges in melatonin levels activate melatonin receptors, which synchronize cellular activities with the natural light/dark cycle. Melatonin receptors are expressed in several cell types in the retina, including the photon-sensitive rods and cones. Previous studies suggest that long-term photoreceptor survival and retinal health is in part reliant on melatonin orchestration of circadian homeostatic activities. This scenario would accordingly envisage that disruption of melatonin receptor signaling is detrimental to photoreceptor health. Using in vivo CRISPR/Cas9 genomic editing, we discovered that a small deletion mutation of the Mel1a melatonin receptor (mtnr1a) gene causes a loss of rod photoreceptors in retinas of developing Xenopus tropicalis heterozygous, but not homozygous mutant tadpoles. Cones were relatively spared from degeneration, and the rod loss phenotype was not obvious after metamorphosis. Localization of Mel1a receptor protein appeared to be about the same in wild type and mutant retinas, suggesting that the mutant protein is expressed at some level in mutant retinal cells. The severe impact on early rod photoreceptor viability may signify a previously underestimated critical role in circadian influences on long-term retinal health and preservation of sight. These data offer evidence that disturbance of homeostatic, circadian signaling, conveyed through a mutated melatonin receptor, is incompatible with rod photoreceptor survival.
    Description: The National Xenopus Resource (NXR) Genome Editing Workshop conducted at the Marine Biological Laboratory (MBL) contributed to the early development of this project (A.F.W. & M.E.H). We thank Dr. Marcin Wlizla, Sean McNamara, Rosie Falco, and Dr. Will Ratzen of the NXR and MBL for their advice and assistance with the F0 founders. We thank Cynthia Bulmer of the NIH Diabetes CoBRE (P20GM104934) Core Histology Facility at the University of Oklahoma Health Sciences Center (OUHSC) for preparing the histology specimens. We thank Dr. David Sherry of OUHSC for critically reading the initial version of the manuscript and his helpful advice during this study.
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  • 10
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    Compounding impact of severe weather events fuels marine heatwave in the coastal ocean (2020)
    Nature Research
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    Publication Date: 2022-05-25
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Dzwonkowski, B., Coogan, J., Fournier, S., Lockridge, G., Park, K., & Lee, T. Compounding impact of severe weather events fuels marine heatwave in the coastal ocean. Nature Communications, 11(1), (2020): 4623, doi:10.1038/s41467-020-18339-2.
    Description: Exposure to extreme events is a major concern in coastal regions where growing human populations and stressed natural ecosystems are at significant risk to such phenomena. However, the complex sequence of processes that transform an event from notable to extreme can be challenging to identify and hence, limit forecast abilities. Here, we show an extreme heat content event (i.e., a marine heatwave) in coastal waters of the northern Gulf of Mexico resulted from compounding effects of a tropical storm followed by an atmospheric heatwave. This newly identified process of generating extreme ocean temperatures occurred prior to landfall of Hurricane Michael during October of 2018 and, as critical contributor to storm intensity, likely contributed to the subsequent extreme hurricane. This pattern of compounding processes will also exacerbate other environmental problems in temperature-sensitive ecosystems (e.g., coral bleaching, hypoxia) and is expected to have expanding impacts under global warming predictions.
    Description: This work would not have been possible without the help of the Tech Support Group at the Dauphin Island Sea Lab. A portion of this work was conducted at the Jet Propulsion Laboratory, California Institute of Technology, under contract with NASA. This research was made possible by the NOAA RESTORE Science Program (NA17NOS4510101 and NA19NOS4510194) and NOAA NGI NMFS Regional Collaboration Network (18-NGI3-61).
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  • 11
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    The Iceland Greenland Seas Project (2020)
    American Meteorological Society
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    Publication Date: 2022-05-26
    Description: © The Author(s), 2019. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Renfrew, I. A., Pickart, R. S., Vage, K., Moore, G. W. K., Bracegirdle, T. J., Elvidge, A. D., Jeansson, E., Lachlan-Cope, T., McRaven, L. T., Papritz, L., Reuder, J., Sodemann, H., Terpstra, A., Waterman, S., Valdimarsson, H., Weiss, A., Almansi, M., Bahr, F., Brakstad, A., Barrell, C., Brooke, J. K., Brooks, B. J., Brooks, I. M., Brooks, M. E., Bruvik, E. M., Duscha, C., Fer, I., Golid, H. M., Hallerstig, M., Hessevik, I., Huang, J., Houghton, L., Jonsson, S., Jonassen, M., Jackson, K., Kvalsund, K., Kolstad, E. W., Konstali, K., Kristiansen, J., Ladkin, R., Lin, P., Macrander, A., Mitchell, A., Olafsson, H., Pacini, A., Payne, C., Palmason, B., Perez-Hernandez, M. D., Peterson, A. K., Petersen, G. N., Pisareva, M. N., Pope, J. O., Seidl, A., Semper, S., Sergeev, D., Skjelsvik, S., Soiland, H., Smith, D., Spall, M. A., Spengler, T., Touzeau, A., Tupper, G., Weng, Y., Williams, K. D., Yang, X., & Zhou, S. The Iceland Greenland Seas Project. Bulletin of the American Meteorological Society, 100(9), (2019): 1795-1817, doi:10.1175/BAMS-D-18-0217.1.
    Description: The Iceland Greenland Seas Project (IGP) is a coordinated atmosphere–ocean research program investigating climate processes in the source region of the densest waters of the Atlantic meridional overturning circulation. During February and March 2018, a field campaign was executed over the Iceland and southern Greenland Seas that utilized a range of observing platforms to investigate critical processes in the region, including a research vessel, a research aircraft, moorings, sea gliders, floats, and a meteorological buoy. A remarkable feature of the field campaign was the highly coordinated deployment of the observing platforms, whereby the research vessel and aircraft tracks were planned in concert to allow simultaneous sampling of the atmosphere, the ocean, and their interactions. This joint planning was supported by tailor-made convection-permitting weather forecasts and novel diagnostics from an ensemble prediction system. The scientific aims of the IGP are to characterize the atmospheric forcing and the ocean response of coupled processes; in particular, cold-air outbreaks in the vicinity of the marginal ice zone and their triggering of oceanic heat loss, and the role of freshwater in the generation of dense water masses. The campaign observed the life cycle of a long-lasting cold-air outbreak over the Iceland Sea and the development of a cold-air outbreak over the Greenland Sea. Repeated profiling revealed the immediate impact on the ocean, while a comprehensive hydrographic survey provided a rare picture of these subpolar seas in winter. A joint atmosphere–ocean approach is also being used in the analysis phase, with coupled observational analysis and coordinated numerical modeling activities underway.
    Description: The IGP has received funding from the U.S. National Science Foundation: Grant OCE-1558742; the U.K.’s Natural Environment Research Council: AFIS (NE/N009754/1); the Research Council of Norway: MOCN (231647), VENTILATE (229791), SNOWPACE (262710) and FARLAB (245907); and the Bergen Research Foundation (BFS2016REK01). We thank all those involved in the field work associated with the IGP, particularly the officers and crew of the Alliance, and the operations staff of the aircraft campaign.
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  • 12
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    Oscillations in the near-field feeding current of a calanoid copepod are useful for particle sensing (2020)
    Nature Research
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    Publication Date: 2022-05-26
    Description: © The Author(s), 2019. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Giuffre, C., Hinow, P., Jiang, H., & Strickler, J. R. Oscillations in the near-field feeding current of a calanoid copepod are useful for particle sensing. Scientific Reports, 9(1), (2019): 17742, doi: 10.1038/s41598-019-54264-1.
    Description: Calanoid copepods are small crustaceans that constitute a major element of aquatic ecosystems. Key to their success is their feeding apparatus consisting of sensor-studded mouth appendages that are in constant motion. These appendages generate a feeding current to enhance the encounter probability with food items. Additionally, sensing enables the organism to determine the position and quality of food particles, and to alter the near-field flow to capture and manipulate the particles for ingestion or rejection. Here we observe a freely swimming copepod Leptodiaptomus sicilis in multiple perspectives together with suspended particles that allow us to analyse the flow field created by the animal. We observe a highly periodic motion of the mouth appendages that is mirrored in oscillations of nearby tracer particles. We propose that the phase shift between the fluid and the particle velocities is sufficient for mechanical detection of the particles entrained in the feeding current. Moreover, we propose that an immersed algal cell may benefit from the excitation by increased uptake of dissolved inorganic compounds.
    Description: We acknowledge funding from the Simons Foundation (grant #278436 to PH) during two visits of HJ to Milwaukee. HJ was also supported by NSF grant OCE-1559062. We thank Dr. Russell Cuhel (School of Freshwater Sciences, University of Wisconsin - Milwaukee) for collecting the animals from Lake Michigan and four unknown readers for valuable comments.
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  • 13
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    Helium, inorganic and organic carbon isotopes of fluids and gases across the Costa Rica convergent margin (2020)
    Nature Research
    Details
    Publication Date: 2022-05-26
    Description: © The Author(s), 2019. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Barry, P. H., Nakagawa, M., Giovannelli, D., de Moor, J. M., Schrenk, M., Seltzer, A. M., Manini, E., Fattorini, D., di Carlo, M., Regoli, F., Fullerton, K., & Lloyd, K. G. Helium, inorganic and organic carbon isotopes of fluids and gases across the Costa Rica convergent margin. Scientific Data, 6(1), (2019): 284, doi: 10.1038/s41597-019-0302-4.
    Description: In 2017, fluid and gas samples were collected across the Costa Rican Arc. He and Ne isotopes, C isotopes as well as total organic and inorganic carbon concentrations were measured. The samples (n = 24) from 2017 are accompanied by (n = 17) samples collected in 2008, 2010 and 2012. He-isotopes ranged from arc-like (6.8 RA) to crustal (0.5 RA). Measured dissolved inorganic carbon (DIC) δ13CVPDB values varied from 3.55 to −21.57‰, with dissolved organic carbon (DOC) following the trends of DIC. Gas phase CO2 only occurs within ~20 km of the arc; δ13CVPDB values varied from −0.84 to −5.23‰. Onsite, pH, conductivity, temperature and dissolved oxygen (DO) were measured; pH ranged from 0.9–10.0, conductivity from 200–91,900 μS/cm, temperatures from 23–89 °C and DO from 2–84%. Data were used to develop a model which suggests that ~91 ± 4.0% of carbon released from the slab/mantle beneath the Costa Rican forearc is sequestered within the crust by calcite deposition with an additional 3.3 ± 1.3% incorporated into autotrophic biomass.
    Description: This work was principally supported by a grant (G-2016-7206) from the Alfred P. Sloan Foundation and the Deep Carbon Observatory to P.H.B. In addition, P.H.B. was supported by NSF grant 1144559 during a portion of this project. D.G. was supported by an NSF grant (MCB 15–17567) and an ELSI Origins Network (EON) research Fellowship, which is supported by a grant from the John Templeton Foundation. The opinions expressed in this publication are those of the authors and do not necessarily reflect the views of the John Templeton Foundation. DG was also partially supported a Deep Life Modeling and Visualization Fellowship, which is supported by the Deep Carbon Observatory. This work was further supported in party by JSPS KAKENHI grants (JP17K14412, JP17H06105, JP17H02989) awarded to M.N., NSF OCE-1431598 and NASA Exobiology NNX16AL59G awarded to K.G.L. J.M.d.M. gratefully acknowledges funding from Universidad Nacional Costa Rica, the World Bank, and the Costa Rican Ley Transitorio 8933 used to acquire a laser carbon isotope system in collaboration with R. Sánchez-Murillo and G. Esquivel-Hernandez. M.N. produced the most data. We thank Patricia Barcala Dominguez for assistance with figure illustration. We thank Bruce Deck, Marten Wahlen and Keith Blackmon for analytical assistance at SIO. Finally, we acknowledge D. Hummer, T. Lopez, C.A. Pratt, Y. Alpízar Segura, A. Battaglia, P. Beaudry, G. Bini, M. Cascante, G. d’Errico, K. Fullerton, E. Gazel, G. González, S. A. Halldórsson, K. Iacovino, T. Ilanko, J.T. Kulongoski, M. Martínez, H. Miller, S. Ono, S. Patwardhan, C.J. Ramírez, F. Smedile, S. Turner, C. Vetriani, M. Yücel, C.J. Ballentine, T.P. Fischer, and D.R. Hilton, who were instrumental in proposal writing, sample collection, sample analysis and data analysis.
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  • 14
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    Mn oxide formation by phototrophs: spatial and temporal patterns, with evidence of an enzymatic superoxide-mediated pathway (2020)
    Nature Research
    Details
    Publication Date: 2022-05-26
    Description: © The Author(s), 2019. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Chaput, D. L., Fowler, A. J., Seo, O., Duhn, K., Hansel, C. M., & Santelli, C. M. Mn oxide formation by phototrophs: spatial and temporal patterns, with evidence of an enzymatic superoxide-mediated pathway. Scientific Reports, 9(1), (2019): 18244, doi: 10.1038/s41598-019-54403-8.
    Description: Manganese (Mn) oxide minerals influence the availability of organic carbon, nutrients and metals in the environment. Oxidation of Mn(II) to Mn(III/IV) oxides is largely promoted by the direct and indirect activity of microorganisms. Studies of biogenic Mn(II) oxidation have focused on bacteria and fungi, with phototrophic organisms (phototrophs) being generally overlooked. Here, we isolated phototrophs from Mn removal beds in Pennsylvania, USA, including fourteen Chlorophyta (green algae), three Bacillariophyta (diatoms) and one cyanobacterium, all of which consistently formed Mn(III/IV) oxides. Isolates produced cell-specific oxides (coating some cells but not others), diffuse biofilm oxides, and internal diatom-specific Mn-rich nodules. Phototrophic Mn(II) oxidation had been previously attributed to abiotic oxidation mediated by photosynthesis-driven pH increases, but we found a decoupling of Mn oxide formation and pH alteration in several cases. Furthermore, cell-free filtrates of some isolates produced Mn oxides at specific time points, but this activity was not induced by Mn(II). Manganese oxide formation in cell-free filtrates occurred via reaction with the oxygen radical superoxide produced by soluble extracellular proteins. Given the known widespread ability of phototrophs to produce superoxide, the contribution of phototrophs to Mn(II) oxidation in the environment may be greater and more nuanced than previously thought.
    Description: This work was funded by a Smithsonian Scholarly Studies grant to CMS, by a Smithsonian Postdoctoral Fellowship to DLC, by the National Science Foundation, grant number CBET-1336496, to CMH and CMS, and by MnDRIVE Environment at the University of Minnesota to CMS. We thank Margaret Dunn and Cliff Denholm, Stream Restoration Inc., for assistance and access to field sites, Carolyn Zeiner (WHOI/Harvard) for useful discussions and advice regarding ROS experiments, as well as Jeff Post, Tim Rose and Tim Gooding (Smithsonian NMNH) for assistance with the SEM/EDS work. Portions of the laboratory work were conducted in and with the support of the L.A.B. facilities at the National Museum of Natural History, Smithsonian Institution.
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  • 15
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    On the steadiness and instability of the Intermediate Western Boundary Current between 24 degrees and 18 degrees S (2020)
    American Meteorological Society
    Details
    Publication Date: 2022-05-26
    Description: Author Posting. © American Meteorological Society, 2019. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 49(12), (2019): 3127-3143, doi: 10.1175/JPO-D-19-0011.1.
    Description: The Intermediate Western Boundary Current (IWBC) transports Antarctic Intermediate Water across the Vitória–Trindade Ridge (VTR), a seamount chain at ~20°S off Brazil. Recent studies suggest that the IWBC develops a strong cyclonic recirculation in Tubarão Bight, upstream of the VTR, with weak time dependency. We herein use new quasi-synoptic observations, data from the Argo array, and a regional numerical model to describe the structure and variability of the IWBC and to investigate its dynamics. Both shipboard acoustic Doppler current profiler (ADCP) data and trajectories of Argo floats confirm the existence of the IWBC recirculation, which is also captured by our Regional Oceanic Modeling System (ROMS) simulation. An “intermediate-layer” quasigeostrophic (QG) model indicates that the ROMS time-mean flow is a good proxy for the IWBC steady state, as revealed by largely parallel isolines of streamfunction ψ⎯ and potential vorticity Q⎯; a ψ⎯−Q⎯ scatter diagram also shows that the IWBC is potentially unstable. Further analysis of the ROMS simulation reveals that remotely generated, westward-propagating nonlinear eddies are the main source of variability in the region. These eddies enter the domain through the Tubarão Bight eastern edge and strongly interact with the IWBC. As they are advected downstream and negotiate the local topography, the eddies grow explosively through horizontal shear production.
    Description: We thank Frank O. Smith for copy editing and proofreading this manuscript. This study was financed in part by Coordenação de Aperfeiçoamento de Pessoal de Nível Superior—CAPES, Brazil—Finance Code 001 and by Projeto REMARSUL (Processo CAPES 88882.158621/2014-01), Projeto VT-Dyn (Processo FAPESP 2015/21729-4) and Projeto SUBMESO (Processo CNPq 442926/2015-4). Rocha was supported by a WHOI Postdoctoral Scholarship.
    Description: 2020-06-06
    Keywords: South Atlantic Ocean ; Instability ; Mesoscale processes ; Intermediate waters ; In situ oceanic observations ; Quasigeostrophic models
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  • 16
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    Impact of multidecadal variability in Atlantic SST on winter atmospheric blocking (2020)
    American Meteorological Society
    Details
    Publication Date: 2022-05-26
    Description: © The Author(s), 2019. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Kwon, Y., Seo, H., Ummenhofer, C. C., & Joyce, T. M. Impact of multidecadal variability in Atlantic SST on winter atmospheric blocking. Journal of Climate, 33(3), (2020): 867-892, doi: 10.1175/JCLI-D-19-0324.1.
    Description: Recent studies have suggested that coherent multidecadal variability exists between North Atlantic atmospheric blocking frequency and the Atlantic multidecadal variability (AMV). However, the role of AMV in modulating blocking variability on multidecadal times scales is not fully understood. This study examines this issue primarily using the NOAA Twentieth Century Reanalysis for 1901–2010. The second mode of the empirical orthogonal function for winter (December–March) atmospheric blocking variability in the North Atlantic exhibits oppositely signed anomalies of blocking frequency over Greenland and the Azores. Furthermore, its principal component time series shows a dominant multidecadal variability lagging AMV by several years. Composite analyses show that this lag is due to the slow evolution of the AMV sea surface temperature (SST) anomalies, which is likely driven by the ocean circulation. Following the warm phase of AMV, the warm SST anomalies emerge in the western subpolar gyre over 3–7 years. The ocean–atmosphere interaction over these 3–7-yr periods is characterized by the damping of the warm SST anomalies by the surface heat flux anomalies, which in turn reduce the overall meridional gradient of the air temperature and thus weaken the meridional transient eddy heat flux in the lower troposphere. The anomalous transient eddy forcing then shifts the eddy-driven jet equatorward, resulting in enhanced Rossby wave breaking and blocking on the northern flank of the jet over Greenland. The opposite is true with the AMV cold phases but with much shorter lags, as the evolution of SST anomalies differs in the warm and cold phases.
    Description: We gratefully acknowledge support from the NSF Climate and Large-scale Dynamics Program (AGS-1355339) to Y-OK, HS, CCU, and TMJ, the NASA Physical Oceanography Program (NNX13AM59G) to Y-OK, HS, and TMJ, NOAA CPO Climate Variability and Predictability Program (NA13OAR4310139) and DOE CESD Regional and Global Model Analysis Program (DE-SC0019492) to Y-OK, and NSF Physical Oceanography Program (OCE-1419235) to HS. We are very grateful to the three anonymous reviewers and editor Dr. Mingfang Ting, for their thorough and insightful suggestions. The NOAA 20CR dataset was downloaded from the NOAA Earth System Research Laboratory Physical Science Division webpage (https://www.esrl.noaa.gov/psd/data/20thC_Rean/). Support for the 20CR Project version 2c dataset is provided by the U.S. Department of Energy, Office of Science Biological and Environmental Research (BER), and by the National Oceanic and Atmospheric Administration Climate Program Office. The HadISST dataset was downloaded from the U.K. Met Office Hadley Centre webpage (https://www.metoffice.gov.uk/hadobs/hadisst/). The ERA-20C dataset was downloaded from the ECMWF webpage (https://apps.ecmwf.int/datasets/data/era20c-daily/). The ERSST5 dataset was provided by the NOAA Earth System Research Laboratory Physical Science Division (https://www.esrl.noaa.gov/psd/data/gridded/data.noaa.ersst.v5.html).
    Keywords: North Atlantic Ocean ; Atmosphere-ocean interaction ; Blocking ; Climate variability ; Multidecadal variability ; North Atlantic Oscillation
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  • 17
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    Nanoparticle-biological interactions in a marine benthic foraminifer (2020)
    Nature Research
    Details
    Publication Date: 2022-05-26
    Description: © The Author(s), 2019. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Ciacci, C., Grimmelpont, M. V., Corsi, I., Bergami, E., Curzi, D., Burini, D., Bouchet, V. M. P., Ambrogini, P., Gobbi, P., Ujiié, Y., Ishitani, Y., Coccioni, R., Bernhard, J. M., & Frontalini, F. Nanoparticle-biological interactions in a marine benthic foraminifer. Scientific Reports, (91), (2019): 19441, doi:10.1038/s41598-019-56037-2.
    Description: The adverse effects of engineered nanomaterials (ENM) in marine environments have recently attracted great attention although their effects on marine benthic organisms such as foraminifera are still largely overlooked. Here we document the effects of three negatively charged ENM, different in size and composition, titanium dioxide (TiO2), polystyrene (PS) and silicon dioxide (SiO2), on a microbial eukaryote (the benthic foraminifera Ammonia parkinsoniana) using multiple approaches. This research clearly shows the presence, within the foraminiferal cytoplasm, of metallic (Ti) and organic (PS) ENM that promote physiological stress. Specifically, marked increases in the accumulation of neutral lipids and enhanced reactive oxygen species production occurred in ENM-treated specimens regardless of ENM type. This study indicates that ENM represent ecotoxicological risks for this microbial eukaryote and presents a new model for the neglected marine benthos by which to assess natural exposure scenarios.
    Description: The authors are very grateful to two anonymous reviewers for their thoughtful and valuable comments that have greatly improved our contribution. NP characterization by DLS was conducted at the facilities of the Department of Biotechnologies, Chemistry and Pharmacy of the University of Siena (Italy). The authors acknowledge Prof. Andrea M. Atrei for the support in DLS analysis. Margot V. Grimmelpont’s stay at Urbino University was supported by an ERASMUS + fellowship.
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  • 18
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    Dispersion in the open ocean seasonal pycnocline at scales of 1-10 km and 1-6 days (2020)
    American Meteorological Society
    Details
    Publication Date: 2022-05-26
    Description: Author Posting. © American Meteorological Society, 2020. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 50(2), (2020): 415-437, doi:10.1175/JPO-D-19-0019.1.
    Description: Results are presented from two dye release experiments conducted in the seasonal thermocline of the Sargasso Sea, one in a region of low horizontal strain rate (~10−6 s−1), the second in a region of intermediate horizontal strain rate (~10−5 s−1). Both experiments lasted ~6 days, covering spatial scales of 1–10 and 1–50 km for the low and intermediate strain rate regimes, respectively. Diapycnal diffusivities estimated from the two experiments were κz = (2–5) × 10−6 m2 s−1, while isopycnal diffusivities were κH = (0.2–3) m2 s−1, with the range in κH being less a reflection of site-to-site variability, and more due to uncertainties in the background strain rate acting on the patch combined with uncertain time dependence. The Site I (low strain) experiment exhibited minimal stretching, elongating to approximately 10 km over 6 days while maintaining a width of ~5 km, and with a notable vertical tilt in the meridional direction. By contrast, the Site II (intermediate strain) experiment exhibited significant stretching, elongating to more than 50 km in length and advecting more than 150 km while still maintaining a width of order 3–5 km. Early surveys from both experiments showed patchy distributions indicative of small-scale stirring at scales of order a few hundred meters. Later surveys show relatively smooth, coherent distributions with only occasional patchiness, suggestive of a diffusive rather than stirring process at the scales of the now larger patches. Together the two experiments provide important clues as to the rates and underlying processes driving diapycnal and isopycnal mixing at these scales.
    Description: Results are presented from two dye release experiments conducted in the seasonal thermocline of the Sargasso Sea, one in a region of low horizontal strain rate (~10−6 s−1), the second in a region of intermediate horizontal strain rate (~10−5 s−1). Both experiments lasted ~6 days, covering spatial scales of 1–10 and 1–50 km for the low and intermediate strain rate regimes, respectively. Diapycnal diffusivities estimated from the two experiments were κz = (2–5) × 10−6 m2 s−1, while isopycnal diffusivities were κH = (0.2–3) m2 s−1, with the range in κH being less a reflection of site-to-site variability, and more due to uncertainties in the background strain rate acting on the patch combined with uncertain time dependence. The Site I (low strain) experiment exhibited minimal stretching, elongating to approximately 10 km over 6 days while maintaining a width of ~5 km, and with a notable vertical tilt in the meridional direction. By contrast, the Site II (intermediate strain) experiment exhibited significant stretching, elongating to more than 50 km in length and advecting more than 150 km while still maintaining a width of order 3–5 km. Early surveys from both experiments showed patchy distributions indicative of small-scale stirring at scales of order a few hundred meters. Later surveys show relatively smooth, coherent distributions with only occasional patchiness, suggestive of a diffusive rather than stirring process at the scales of the now larger patches. Together the two experiments provide important clues as to the rates and underlying processes driving diapycnal and isopycnal mixing at these scales.
    Description: 2020-08-06
    Keywords: Ocean ; Atlantic Ocean ; Diapycnal mixing ; Diffusion ; Dispersion ; Mixing
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  • 19
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    Improved statistical method for quality control of hydrographic observations (2020)
    American Meteorological Society
    Details
    Publication Date: 2022-05-26
    Description: Author Posting. © American Meteorological Society, 2020. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of the Atmospheric and Oceanic Technology 37(5), (2020): 789-806, doi:10.1175/JTECH-D-18-0244.1.
    Description: Realistic ocean state prediction and its validation rely on the availability of high quality in situ observations. To detect data errors, adequate quality check procedures must be designed. This paper presents procedures that take advantage of the ever-growing observation databases that provide climatological knowledge of the ocean variability in the neighborhood of an observation location. Local validity intervals are used to estimate binarily whether the observed values are considered as good or erroneous. Whereas a classical approach estimates validity bounds from first- and second-order moments of the climatological parameter distribution, that is, mean and variance, this work proposes to infer them directly from minimum and maximum observed values. Such an approach avoids any assumption of the parameter distribution such as unimodality, symmetry around the mean, peakedness, or homogeneous distribution tail height relative to distribution peak. To reach adequate statistical robustness, an extensive manual quality control of the reference dataset is critical. Once the data have been quality checked, the local minima and maxima reference fields are derived and the method is compared with the classical mean/variance-based approach. Performance is assessed in terms of statistics of good and bad detections. It is shown that the present size of the reference datasets allows the parameter estimates to reach a satisfactory robustness level to always make the method more efficient than the classical one. As expected, insufficient robustness persists in areas with an especially low number of samples and high variability.
    Description: This study has been conducted using EU Copernicus Marine Service Information and was supported by the European Union within the EU Copernicus Marine Service In Situ phase-I and phase-II contracts led by Ifremer. The publication was also supported by SOERE CTDO2 in France. The Argo data were collected and made freely available by the International Argo Program and the national programs that contribute to it (see http://www.argo.ucsd.edu, http://argo.jcommops.org). The Argo Program is part of the Global Ocean Observing System (http://doi.org/10.17882/42182). The marine mammal data were collected and made freely available by the International MEOP Consortium and the national programs that contribute to it (see http://www.meop.net; https://doi.org/10.17882/45461). Aleix Gelabert and Dídac Costa were the skippers of the OPOO, sponsored by the Intergovernmental Oceanographic Commission (UNESCO) and Pharmaton. The BWR is a periodic oceanic race organized by the Fundació Navegació Oceànica de Barcelona (FNOB). Reviewer D. Briand provided some useful comments on the final version of the draft paper before submission.
    Description: 2020-11-04
    Keywords: Ocean ; Climatology ; Salinity ; Temperature ; Data quality control ; Oceanic variability
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  • 20
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    Surface expression of a wall fountain: application to subglacial discharge plumes (2020)
    American Meteorological Society
    Details
    Publication Date: 2022-05-26
    Description: Author Posting. © American Meteorological Society, 2020. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 50(5), (2020): 1245-1263, doi:10.1175/JPO-D-19-0213.1.
    Description: We use laboratory experiments and theoretical modeling to investigate the surface expression of a subglacial discharge plume, as occurs at many fjords around Greenland. The experiments consider a fountain that is released vertically into a homogeneous fluid, adjacent either to a vertical or a sloping wall, that then spreads horizontally at the free surface before sinking back to the bottom. We present a model that separates the fountain into two separate regions: a vertical fountain and a horizontal, negatively buoyant jet. The model is compared to laboratory experiments that are conducted over a range of volume fluxes, density differences, and ambient fluid depths. It is shown that the nondimensionalized length, width, and aspect ratio of the surface expression are dependent on the Froude number, calculated at the start of the negatively buoyant jet. The model is applied to observations of the surface expression from a Greenland subglacial discharge plume. In the case where the discharge plume reaches the surface with negative buoyancy the model can be used to estimate the discharge properties at the base of the glacier.
    Description: We gratefully acknowledge technical assistance from Anders Jensen and thank anonymous reviewers for improving the clarity of the manuscript. CM thanks the Weston Howard Jr. Scholarship for funding. Support to CC was given by NSF project OCE-1434041 and OCE-1658079.
    Description: 2020-10-27
    Keywords: Ocean ; Glaciers ; Ice sheets ; Convection ; Laboratory/physical models
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  • 21
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    Limited and localized magmatism in the Central Atlantic Magmatic Province (2020)
    Nature Research
    Details
    Publication Date: 2022-05-26
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Marzen, R. E., Shillington, D. J., Lizarralde, D., Knapp, J. H., Heffner, D. M., Davis, J. K., & Harder, S. H. Limited and localized magmatism in the Central Atlantic Magmatic Province. Nature Communications, 11(1), (2020): 3397, doi:10.1038/s41467-020-17193-6.
    Description: The Central Atlantic Magmatic Province (CAMP) is the most aerially extensive magmatic event in Earth’s history, but many questions remain about its origin, volume, and distribution. Despite many observations of CAMP magmatism near Earth’s surface, few constraints exist on CAMP intrusions at depth. Here we present detailed constraints on crustal and upper mantle structure from wide-angle seismic data across the Triassic South Georgia Rift that formed shortly before CAMP. Lower crustal magmatism is concentrated where synrift sedimentary fill is thickest and the crust is thinnest, suggesting that lithospheric thinning influenced the locus and volume of magmatism. The limited distribution of lower crustal intrusions implies modest total CAMP volumes of 85,000 to 169,000 km3 beneath the South Georgia Rift, consistent with moderately elevated mantle potential temperatures (〈1500 °C). These results suggest that CAMP magmatism in the South Georgia Rift is caused by syn-rift decompression melting of a warm, enriched mantle.
    Description: This project was funded by an NSF GRFP fellowship DGE 16-44869 and a grant from the National Science Foundation’s Division of Earth Sciences (NSF-EAR) EarthScope program through the collaborative awards EAR-1144534/−1144829/−1144391. Data collection was made possible with help from IRIS PASSCAL, the University of Texas El Paso Seismic Source Facility, the teams of students who deployed and recovered geophones, and the support of landowners and county and state officials. We thank Alistair Harding for the VMTomo code, Nathan Miller for the PyVM toolbox, and William Wilcock for maintaining the Upicker package to pick arrivals.
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  • 22
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    Using the Helmholtz decomposition to define the Indian Ocean meridional overturning streamfunction (2020)
    American Meteorological Society
    Details
    Publication Date: 2022-05-26
    Description: Author Posting. © American Meteorological Society, 2020. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 50(3), (2020): 679-694, doi:10.1175/JPO-D-19-0218.1.
    Description: The zonally integrated flow in a basin can be separated into the divergent/nondivergent parts, and a uniquely defined meridional overturning circulation (MOC) can be calculated. For a basin with significant volume exchange at zonal open boundaries, this method is competent in removing the components associated with the nonzero source terms due to zonal transports at open boundaries. This method was applied to the zonally integrated flow in the Indian Ocean basin extended all the way to the Antarctic by virtue of the ECCO dataset. The contributions due to two major zonal flow systems at open boundaries, the Indonesian Throughflow (ITF) and the Antarctic Circumpolar Current (ACC), were well separated from the rotational flow component, and a nondivergent overturning circulation pattern was identified. Comparisons with previous studies on the MOC of the Indian Ocean in different seasons showed overall consistency but with refinements in details to the south of the entry of the ITF, reflecting the influence of ITF on the MOC pattern in the domain. Other options of decomposition are also examined.
    Description: LH was supported by the National Basic Research Program of China through Grant 2019YFA0606703 and “The Fundamental Research Funds of Shandong University” (2019GN051). The authors thank the anonymous reviewers and the editor for their constructive comments. Code availability: The Matlab code that performs the decomposition and produces some figures in this paper is available at https://github.com/lei-han-SDU/IMOC/.
    Description: 2020-09-02
    Keywords: Meridional overturning circulation ; Ocean circulation ; Streamfunction
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  • 23
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    Microbial diversity drives carbon use efficiency in a model soil (2020)
    Nature Research
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    Publication Date: 2022-05-26
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Domeignoz-Horta, L. A., Pold, G., Liu, X. A., Frey, S. D., Melillo, J. M., & DeAngelis, K. M. Microbial diversity drives carbon use efficiency in a model soil. Nature Communications, 11(1), (2020): 3684, doi:10.1038/s41467-020-17502-z.
    Description: Empirical evidence for the response of soil carbon cycling to the combined effects of warming, drought and diversity loss is scarce. Microbial carbon use efficiency (CUE) plays a central role in regulating the flow of carbon through soil, yet how biotic and abiotic factors interact to drive it remains unclear. Here, we combine distinct community inocula (a biotic factor) with different temperature and moisture conditions (abiotic factors) to manipulate microbial diversity and community structure within a model soil. While community composition and diversity are the strongest predictors of CUE, abiotic factors modulated the relationship between diversity and CUE, with CUE being positively correlated with bacterial diversity only under high moisture. Altogether these results indicate that the diversity × ecosystem-function relationship can be impaired under non-favorable conditions in soils, and that to understand changes in soil C cycling we need to account for the multiple facets of global changes.
    Description: Funding for this project was provided by the Department of Energy grant DE-SC0016590 to K.M.D. and S.D.F., and an American Association of University Women Dissertation fellowship to G.P. We would also like to thank Stuart Grandy and Kevin Geyer for the fruitful discussions and Mary Waters, Courtney Bly and Ana Horta for their help with samples processing.
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    Deep high-temperature hydrothermal circulation in a detachment faulting system on the ultra-slow spreading ridge (2020)
    Nature Research
    Details
    Publication Date: 2022-05-26
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Tao, C., Seyfried, W. E., Jr., Lowell, R. P., Liu, Y., Liang, J., Guo, Z., Ding, K., Zhang, H., Liu, J., Qiu, L., Egorov, I., Liao, S., Zhao, M., Zhou, J., Deng, X., Li, H., Wang, H., Cai, W., Zhang, G., Zhou, H., Lin, J., & Li, W. Deep high-temperature hydrothermal circulation in a detachment faulting system on the ultra-slow spreading ridge. Nature Communications, 11(1), (2020): 1300, doi:10.1038/s41467-020-15062-w.
    Description: Coupled magmatic and tectonic activity plays an important role in high-temperature hydrothermal circulation at mid-ocean ridges. The circulation patterns for such systems have been elucidated by microearthquakes and geochemical data over a broad spectrum of spreading rates, but such data have not been generally available for ultra-slow spreading ridges. Here we report new geophysical and fluid geochemical data for high-temperature active hydrothermal venting at Dragon Horn area (49.7°E) on the Southwest Indian Ridge. Twin detachment faults penetrating to the depth of 13 ± 2 km below the seafloor were identified based on the microearthquakes. The geochemical composition of the hydrothermal fluids suggests a long reaction path involving both mafic and ultramafic lithologies. Combined with numerical simulations, our results demonstrate that these hydrothermal fluids could circulate ~ 6 km deeper than the Moho boundary and to much greater depths than those at Trans-Atlantic Geotraverse and Logachev-1 hydrothermal fields on the Mid-Atlantic Ridge.
    Description: This work was supported by National Key R&D Program of China under contract no. 2018YFC0309901, 2017YFC0306603, 2017YFC0306803, and 2017YFC0306203, COMRA Major Project under contract No. DY135-S1-01-01 and No. DY135-S1-01-06.
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    Dual clumped isotope thermometry resolves kinetic biases in carbonate formation temperatures (2020)
    Nature Research
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    Publication Date: 2022-05-26
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Bajnai, D., Guo, W., Spötl, C., Coplen, T. B., Methner, K., Löffler, N., Krsnik, E., Gischler, E., Hansen, M., Henkel, D., Price, G. D., Raddatz, J., Scholz, D., & Fiebig, J. Dual clumped isotope thermometry resolves kinetic biases in carbonate formation temperatures. Nature Communications, 11(1), (2020): 4005, doi:10.1038/s41467-020-17501-0.
    Description: Surface temperature is a fundamental parameter of Earth’s climate. Its evolution through time is commonly reconstructed using the oxygen isotope and the clumped isotope compositions of carbonate archives. However, reaction kinetics involved in the precipitation of carbonates can introduce inaccuracies in the derived temperatures. Here, we show that dual clumped isotope analyses, i.e., simultaneous ∆47 and ∆48 measurements on the single carbonate phase, can identify the origin and quantify the extent of these kinetic biases. Our results verify theoretical predictions and evidence that the isotopic disequilibrium commonly observed in speleothems and scleractinian coral skeletons is inherited from the dissolved inorganic carbon pool of their parent solutions. Further, we show that dual clumped isotope thermometry can achieve reliable palaeotemperature reconstructions, devoid of kinetic bias. Analysis of a belemnite rostrum implies that it precipitated near isotopic equilibrium and confirms the warmer-than-present temperatures during the Early Cretaceous at southern high latitudes.
    Description: This work became possible through DFG grant “INST 161/871-1” and the Investment in Science Fund at Woods Hole Oceanographic Institution. The authors would like to thank Sven Hofmann and Manuel Schumann for their assistance in the joint Goethe University – Senckenberg BiK-F Stable Isotope Facility at the Institute of Geosciences, Goethe University Frankfurt. K.M. acknowledges funding through “DFG ME 4955/1-1”, E.K. through “DFG MU 2845/6-1”, D.S. through “DFG SCHO 1274/8-1” and “DFG SCHO 1274/11-1”, and M.H. through “DFG HA 8694/1-1”. C.S. acknowledges funding from the University of Innsbruck. A review of the manuscript by David Evans on behalf of the USGS is acknowledged.
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    Historically unprecedented Northern Gulf of Mexico hurricane activity from 650 to 1250 CE (2020)
    Nature Research
    Details
    Publication Date: 2022-05-26
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Rodysill, J. R., Donnelly, J. P., Sullivan, R., Lane, P. D., Toomey, M., Woodruff, J. D., Hawkes, A. D., MacDonald, D., d'Entremont, N., McKeon, K., Wallace, E., & van Hengstum, P. J. Historically unprecedented Northern Gulf of Mexico hurricane activity from 650 to 1250 CE. Scientific Reports, 10(1), (2020): 19092. doi:10.1038/s41598-020-75874-0.
    Description: Hurricane Michael (2018) was the first Category 5 storm on record to make landfall on the Florida panhandle since at least 1851 CE (Common Era), and it resulted in the loss of 59 lives and $25 billion in damages across the southeastern U.S. This event placed a spotlight on recent intense (exceeding Category 4 or 5 on the Saffir-Simpson Hurricane Wind Scale) hurricane landfalls, prompting questions about the natural range in variability of hurricane activity that the instrumental record is too short to address. Of particular interest is determining whether the frequency of recent intense hurricane landfalls in the northern Gulf of Mexico (GOM) is within or outside the natural range of intense hurricane activity prior to 1851 CE. In this study, we identify intense hurricane landfalls in northwest Florida during the past 2000 years based on coarse anomaly event detection from two coastal lacustrine sediment archives. We identified a historically unprecedented period of heightened storm activity common to four Florida panhandle localities from 650 to 1250 CE and a shift to a relatively quiescent storm climate in the GOM spanning the past six centuries. Our study provides long-term context for events like Hurricane Michael and suggests that the observational period 1851 CE to present may underrepresent the natural range in landfalling hurricane activity.
    Description: Funding for this project was provided by the Strategic Environmental Research and Development Program (SERDP) grant and NSF awards 0903020, 1902463, and 1854980 awarded to Jeffrey Donnelly, and the USGS Land Change Science Program.
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    Octopus arms exhibit exceptional flexibility (2020)
    Nature Research
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    Publication Date: 2022-05-26
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Kennedy, E. B. L., Buresch, K. C., Boinapally, P., & Hanlon, R. T. Octopus arms exhibit exceptional flexibility. Scientific Reports, 10(1), (2020): 20872. doi:10.1038/s41598-020-77873-7.
    Description: The octopus arm is often referred to as one of the most flexible limbs in nature, yet this assumption requires detailed inspection given that this has not been measured comprehensively for all portions of each arm. We investigated the diversity of arm deformations in Octopus bimaculoides with a frame-by-frame observational analysis of laboratory video footage in which animals were challenged with different tasks. Diverse movements in these hydrostatic arms are produced by some combination of four basic deformations: bending (orally, aborally; inward, outward), torsion (clockwise, counter-clockwise), elongation, and shortening. More than 16,500 arm deformations were observed in 120 min of video. Results showed that all eight arms were capable of all four types of deformation along their lengths and in all directions. Arms function primarily to bring the sucker-lined oral surface in contact with target surfaces. Bending was the most common deformation observed, although the proximal third of the arms performed relatively less bending and more shortening and elongation as compared with other arm regions. These findings demonstrate the exceptional flexibility of the octopus arm and provide a basis for investigating motor control of the entire arm, which may aid the future development of soft robotics.
    Description: We gratefully acknowledge funding from Grant N00014-19-1-2445 from the Office of Naval Research, Tom McKenna and Marc Steinberg, Program Managers. We also thank the staff of the Marine Resources Center at MBL for assistance with water quality measurements, seawater system maintenance, and collection of food items for octopuses.
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    Maximizing CRISPR/Cas9 phenotype penetrance applying predictive modeling of editing outcomes in Xenopus and zebrafish embryos (2020)
    Nature Research
    Details
    Publication Date: 2022-05-26
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Naert, T., Tulkens, D., Edwards, N. A., Carron, M., Shaidani, N. I., Wlizla, M., Boel, A., Demuynck, S., Horb, M. E., Coucke, P., Willaert, A., Zorn, A. M., & Vleminckx, K. Maximizing CRISPR/Cas9 phenotype penetrance applying predictive modeling of editing outcomes in Xenopus and zebrafish embryos. Scientific Reports, 10(1), (2020): 14662, doi:10.1038/s41598-020-71412-0.
    Description: CRISPR/Cas9 genome editing has revolutionized functional genomics in vertebrates. However, CRISPR/Cas9 edited F0 animals too often demonstrate variable phenotypic penetrance due to the mosaic nature of editing outcomes after double strand break (DSB) repair. Even with high efficiency levels of genome editing, phenotypes may be obscured by proportional presence of in-frame mutations that still produce functional protein. Recently, studies in cell culture systems have shown that the nature of CRISPR/Cas9-mediated mutations can be dependent on local sequence context and can be predicted by computational methods. Here, we demonstrate that similar approaches can be used to forecast CRISPR/Cas9 gene editing outcomes in Xenopus tropicalis, Xenopus laevis, and zebrafish. We show that a publicly available neural network previously trained in mouse embryonic stem cell cultures (InDelphi-mESC) is able to accurately predict CRISPR/Cas9 gene editing outcomes in early vertebrate embryos. Our observations can have direct implications for experiment design, allowing the selection of guide RNAs with predicted repair outcome signatures enriched towards frameshift mutations, allowing maximization of CRISPR/Cas9 phenotype penetrance in the F0 generation.
    Description: Research in the Vleminckx laboratory is supported by the Research Foundation—Flanders (FWO-Vlaanderen) (Grants G0A1515N and G029413N), by the Belgian Science Policy (Interuniversity Attraction Poles—IAP7/07) and by the Concerted Research Actions from Ghent University (BOF15/GOA/011). Further support was obtained by the Hercules Foundation, Flanders (Grant AUGE/11/14) and the Desmoid Tumor Research Foundation and the Desmoid Tumour Foundation Canada. T.N. is funded by “Kom op tegen Kanker” (Stand up to Cancer), the Flemish cancer society and previously held PhD fellowship with VLAIO-HERMES during the course of this work. D.T. and M. C. hold a PhD fellowship from the Research Foundation-Flanders (FWO-Vlaanderen). The Zorn Lab is supported by Funding from NIH National Institute of Child Health and Human Development (NICHD) P01 HD093363. A.W. and A.B. are supported by the Ghent University (Universiteit Gent) Methusalem grant BOFMET2015000401 to Anne De Paepe. The National Xenopus Resource and Horb lab is supported by funding from the National Institutes of Health (P40 OD010997 and R01 HD084409).
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    Role of C4 carbon fixation in Ulva prolifera, the macroalga responsible for the world's largest green tides (2020)
    Nature Research
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    Publication Date: 2022-05-26
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Liu, D., Ma, Q., Valiela, I., Anderson, D. M., Keesing, J. K., Gao, K., Zhen, Y., Sun, X., & Wang, Y. Role of C4 carbon fixation in Ulva prolifera, the macroalga responsible for the world's largest green tides. Communications Biology, 3(1), (2020): 494, doi:10.1038/s42003-020-01225-4.
    Description: Most marine algae preferentially assimilate CO2 via the Calvin-Benson Cycle (C3) and catalyze HCO3− dehydration via carbonic anhydrase (CA) as a CO2-compensatory mechanism, but certain species utilize the Hatch-Slack Cycle (C4) to enhance photosynthesis. The occurrence and importance of the C4 pathway remains uncertain, however. Here, we demonstrate that carbon fixation in Ulva prolifera, a species responsible for massive green tides, involves a combination of C3 and C4 pathways, and a CA-supported HCO3− mechanism. Analysis of CA and key C3 and C4 enzymes, and subsequent analysis of δ13C photosynthetic products showed that the species assimilates CO2 predominately via the C3 pathway, uses HCO3− via the CA mechanism at low CO2 levels, and takes advantage of high irradiance using the C4 pathway. This active and multi-faceted carbon acquisition strategy is advantageous for the formation of massive blooms, as thick floating mats are subject to intense surface irradiance and CO2 limitation.
    Description: This work was supported by the State Key Project of Research and Development Plan, Ministry of Science and Technology of the Peopleʼs Republic of China (2016YFC1402106). Support for D.M.A. provided by the Woods Hole Oceanographic Institution—Ocean University of China Cooperative Research Initiative. We thank Dr. Juntian Xu, Jing Ma, Ying Li, and Chenglong Ji for assisting culture experiments and sample analysis.
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    The hierarchical assembly of septins revealed by high-speed AFM (2020)
    Nature Research
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    Publication Date: 2022-05-26
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Jiao, F., Cannon, K. S., Lin, Y. C., Gladfelter, A. S., & Scheuring, S. The hierarchical assembly of septins revealed by high-speed AFM. Nature Communications, 11(1), (2020): 5062, doi:10.1038/s41467-020-18778-x.
    Description: Septins are GTP-binding proteins involved in diverse cellular processes including division and membrane remodeling. Septins form linear, palindromic heteromeric complexes that can assemble in filaments and higher-order structures. Structural studies revealed various septin architectures, but questions concerning assembly-dynamics and -pathways persist. Here we used high-speed atomic force microscopy (HS-AFM) and kinetic modeling which allowed us to determine that septin filament assembly was a diffusion-driven process, while formation of higher-order structures was complex and involved self-templating. Slightly acidic pH and increased monovalent ion concentrations favor filament-assembly, -alignment and -pairing. Filament-alignment and -pairing further favored diffusion-driven assembly. Pairing is mediated by the septin N-termini face, and may occur symmetrically or staggered, likely important for the formation of higher-order structures of different shapes. Multilayered structures are templated by the morphology of the underlying layers. The septin C-termini face, namely the C-terminal extension of Cdc12, may be involved in membrane binding.
    Description: We thank J. Thorner for the generous gift of the CTE mutant plasmids. K.S.C. was supported in part by a grant from NIGMS under award T32 GM119999 and A.S.G., F.J. and S.S. were supported by NIH RO1 GM130934.
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    Revising evidence of hurricane strikes on Abaco Island (the Bahamas) over the last 700 years (2020)
    Nature Research
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    Publication Date: 2022-05-26
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Winkler, T. S., van Hengstum, P. J., Donnelly, J. P., Wallace, E. J., Sullivan, R. M., MacDonald, D., & Albury, N. A. Revising evidence of hurricane strikes on Abaco Island (the Bahamas) over the last 700 years. Scientific Reports, 10(1), (2020): 16556, doi:10.1038/s41598-020-73132-x.
    Description: The northern Bahamas have experienced more frequent intense-hurricane impacts than almost anywhere else in the Atlantic since 1850 CE. In 2019, category 5 (Saffir-Simpson scale) Hurricane Dorian demonstrated the destructive potential of these natural hazards. Problematically, determining whether high hurricane activity levels remained constant through time is difficult given the short observational record (〈 170 years). We present a 700-year long, near-annually resolved stratigraphic record of hurricane passage near Thatchpoint Blue Hole (TPBH) on Abaco Island, The Bahamas. Using longer sediment cores (888 cm) and more reliable age-control, this study revises and temporally expands a previous study from TPBH that underestimated the sedimentation rate. TPBH records at least 13 ≥ category 2 hurricanes per century between 1500 to 1670 CE, which exceeds the 9 ≥ category 2 hurricanes per century within 50 km of TPBH since 1850 CE. The eastern United States also experienced frequent hurricanes from 1500 to 1670 CE, but frequency was depressed elsewhere in the Atlantic Ocean. This suggests that spatial heterogeneity in Atlantic hurricane activity since 1850 CE could have persisted throughout the last millennium. This heterogeneity is impacted by climatic and stochastic forcing, but additional high-resolution paleo-hurricane reconstructions are required to assess the mechanisms that impact regional variability.
    Description: Field support was provided by Jody Albury and the staff of Friends of the Environment in Marsh Harbour, The Bahamas, and technical support was provided was provided by M. Horgan and S. Molodtsov. Funding for this project was provided by NSF Awards OCE-1356509, OCE-1356708, OCE-1854917, OCE-1903616, and ICER-1854980. The open access publishing fees for this article have been covered by the Texas A&M University Open Access to Knowledge Fund (OAKFund), supported by the University Libraries.
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    Bifurcation and upwelling of the equatorial undercurrent west of the Galapagos Archipelago (2020)
    American Meteorological Society
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    Publication Date: 2022-05-26
    Description: Author Posting. © American Meteorological Society, 2020. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 50(4), (2020): 887-905, doi:10.1175/JPO-D-19-0110.1.
    Description: The Equatorial Undercurrent (EUC) encounters the Galápagos Archipelago on the equator as it flows eastward across the Pacific. The impact of the Galápagos Archipelago on the EUC in the eastern equatorial Pacific remains largely unknown. In this study, the path of the EUC as it reaches the Galápagos Archipelago is measured directly using high-resolution observations obtained by autonomous underwater gliders. Gliders were deployed along three lines that define a closed region with the Galápagos Archipelago as the eastern boundary and 93°W from 2°S to 2°N as the western boundary. Twelve transects were simultaneously occupied along the three lines during 52 days in April–May 2016. Analysis of individual glider transects and average sections along each line show that the EUC splits around the Galápagos Archipelago. Velocity normal to the transects is used to estimate net horizontal volume transport into the volume. Downward integration of the net horizontal transport profile provides an estimate of the time- and areal-averaged vertical velocity profile over the 52-day time period. Local maxima in vertical velocity occur at depths of 25 and 280 m with magnitudes of (1.7 ± 0.6) × 10−5 m s−1 and (8.0 ± 1.6) × 10−5 m s−1, respectively. Volume transport as a function of salinity indicates that water crossing 93°W south (north) of 0.4°S tends to flow around the south (north) side of the Galápagos Archipelago. Comparisons are made between previous observational and modeling studies with differences attributed to effects of the strong 2015/16 El Niño event, the annual cycle of local winds, and varying longitudes between studies of the equatorial Pacific.
    Description: This work was supported by National Science Foundation (Grants OCE-1232971 and OCE-1233282) and the NASA Earth and Space Science Fellowship Program (Grant 80NSSC17K0443).
    Keywords: Tropics ; Boundary currents ; Topographic effects ; Transport ; Upwelling/downwelling ; In situ oceanic observations
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    Assessment of numerical simulations of deep circulation and variability in the Gulf of Mexico using recent observations (2020)
    American Meteorological Society
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    Publication Date: 2022-05-26
    Description: Author Posting. © American Meteorological Society, 2020. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 50(4), (2020): 1045-1064, doi:10.1175/JPO-D-19-0137.1.
    Description: Three simulations of the circulation in the Gulf of Mexico (the “Gulf”) using different numerical general circulation models are compared with results of recent large-scale observational campaigns conducted throughout the deep (〉1500 m) Gulf. Analyses of these observations have provided new understanding of large-scale mean circulation features and variability throughout the deep Gulf. Important features include cyclonic flow along the continental slope, deep cyclonic circulation in the western Gulf, a counterrotating pair of cells under the Loop Current region, and a cyclonic cell to the south of this pair. These dominant circulation features are represented in each of the ocean model simulations, although with some obvious differences. A striking difference between all the models and the observations is that the simulated deep eddy kinetic energy under the Loop Current region is generally less than one-half of that computed from observations. A multidecadal integration of one of these numerical simulations is used to evaluate the uncertainty of estimates of velocity statistics in the deep Gulf computed from limited-length (4 years) observational or model records. This analysis shows that the main deep circulation features identified from the observational studies appear to be robust and are not substantially impacted by variability on time scales longer than the observational records. Differences in strengths and structures of the circulation features are identified, however, and quantified through standard error analysis of the statistical estimates using the model solutions.
    Description: This work was supported by the Gulf Research Program of the National Academy of Sciences under Awards 2000006422 and 2000009966. The content is solely the responsibility of the authors and does not necessarily represent the official views of the Gulf Research Program or the National Academy of Sciences. The authors acknowledge the GLORYS project for providing the ocean reanalysis data used in the ROMS simulation. GLORYS is jointly conducted by MERCATOR OCEAN, CORIOLIS, and CNRS/INSU. Installation, recovery, data acquisition, and processing of the CANEK group current-meter moorings were possible because of CICESE-PetróleosMexicanos Grant PEP-CICESE 428229851 and the dedicated work of the crew of the B/O Justo Sierra and scientists of the CANEK group. The authors thank Dr. Aljaz Maslo, CICESE, for assistance with analysis of model data. The Bureau of Ocean Energy Management (BOEM), U.S. Dept. of the Interior, provided funding for the Lagrangian Study of the Deep Circulation in the Gulf of Mexico and the Observations and Dynamics of the Loop Current study. HYCOM simulation data are available from the HYCOM data server (https://www.hycom.org/data/goml0pt04/expt-02pt2), MITgcm data are available from the ECCO data server (http://ecco.ucsd.edu/gom_results2.html), and the ROMS simulation data are available from GRIIDC (NA.x837.000:0001).
    Keywords: Ocean circulation ; Abyssal circulation ; Bottom currents/bottom water ; Eddies ; Ocean models
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    The contrasting dynamics of the buoyancy-forced Lofoten and Greenland Basins (2020)
    American Meteorological Society
    Details
    Publication Date: 2022-05-26
    Description: Author Posting. © American Meteorological Society, 2020. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 50(5),(2020): 1227-1244, doi:10.1175/JPO-D-19-0280.1.
    Description: The Nordic seas are commonly described as a single basin to investigate their dynamics and sensitivity to environmental changes when using a theoretical framework. Here, we introduce a conceptual model for a two-basin marginal sea that better represents the Nordic seas geometry. In our conceptual model, the marginal sea is characterized by both a cyclonic boundary current and a front current as a result of different hydrographic properties east and west of the midocean ridge. The theory is compared to idealized model simulations and shows good agreement over a wide range of parameter settings, indicating that the physics in the two-basin marginal sea is well captured by the conceptual model. The balances between the atmospheric buoyancy forcing and the lateral eddy heat fluxes from the boundary current and the front current differ between the Lofoten and the Greenland Basins, since the Lofoten Basin is more strongly eddy dominated. Results show that this asymmetric sensitivity leads to opposing responses depending on the strength of the atmospheric buoyancy forcing. Additionally, the front current plays an essential role for the heat and volume budget of the two basins, by providing an additional pathway for heat toward the interior of both basins via lateral eddy heat fluxes. The variability of the temperature difference between east and west influences the strength of the different flow branches through the marginal sea and provides a dynamical explanation for the observed correlation between the front current and the slope current of the Norwegian Atlantic Current in the Nordic seas.
    Description: We thank Ilker Fer and two anonymous reviewers whose comments improved this paper. S. L. Ypma and S. Georgiou were supported by NWO (Netherlands Organisation for Scientific Research) VIDI Grant 864.13.011 awarded to C. A. Katsman. M. A. Spall was supported by National Science Foundation Grants OCE-1558742 and OPP-1822334. E. Lambert is funded by the ERA4CS project INSeaPTION. The model data analyzed in this study are available on request from the corresponding author. This study has been conducted using E.U. Copernicus Marine Service Information. The altimeter products were produced by Ssalto/Duacs and distributed by Aviso+, with support from CNES (https://www.aviso.altimetry.fr).
    Description: 2020-10-27
    Keywords: Boundary currents ; Deep convection ; Eddies ; Fronts ; Instability ; Meridional overturning circulation
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    Decadal predictability of North Atlantic blocking and the NAO (2020)
    Nature Research
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    Publication Date: 2022-05-26
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Athanasiadis, P. J., Yeager, S., Kwon, Y. O., Bellucci, A., Smith, D. W., & Tibaldi, S. Decadal predictability of North Atlantic blocking and the NAO. Npj Climate and Atmospheric Science, 3(1), (2020): 20, doi:10.1038/s41612-020-0120-6.
    Description: Can multi-annual variations in the frequency of North Atlantic atmospheric blocking and mid-latitude circulation regimes be skilfully predicted? Recent advances in seasonal forecasting have shown that mid-latitude climate variability does exhibit significant predictability. However, atmospheric predictability has generally been found to be quite limited on multi-annual timescales. New decadal prediction experiments from NCAR are found to exhibit remarkable skill in reproducing the observed multi-annual variations of wintertime blocking frequency over the North Atlantic and of the North Atlantic Oscillation (NAO) itself. This is partly due to the large ensemble size that allows the predictable component of the atmospheric variability to emerge from the background chaotic component. The predictable atmospheric anomalies represent a forced response to oceanic low-frequency variability that strongly resembles the Atlantic Multi-decadal Variability (AMV), correctly reproduced in the decadal hindcasts thanks to realistic ocean initialization and ocean dynamics. The occurrence of blocking in certain areas of the Euro-Atlantic domain determines the concurrent circulation regime and the phase of known teleconnections, such as the NAO, consequently affecting the stormtrack and the frequency and intensity of extreme weather events. Therefore, skilfully predicting the decadal fluctuations of blocking frequency and the NAO may be used in statistical predictions of near-term climate anomalies, and it provides a strong indication that impactful climate anomalies may also be predictable with improved dynamical models.
    Description: This study received support by the Blue-Action project (European Union’s Horizon 2020 research and innovation program, #727852). A.B. was supported by the H2020 EUCP (grant no. GA 776613) project. S.Y. acknowledges the support of National Science Foundation (NSF) grants OPP-1737377 and OCE-1243015. NCAR is a major facility sponsored by NSF under Cooperative Agreement No. 1852977. The CESM-DPLE was generated using computational resources provided by the National Energy Research Scientific Computing Center, which is supported by the Office of Science of the U.S. Department of Energy under Contract DE-AC02-05CH11231, as well as by an Accelerated Scientific Discovery grant for Cheyenne (https://doi.org/10.5065/D6RX99HX) that was awarded by NCAR’s Computational and Information Systems Laboratory. Y.-O.K. was supported by the DOE Regional and Global Model Analysis Program (DE-SC0019492), and the NSF Arctic Natural Science Program (OPP-1736738) and Climate and Large-scale Dynamics Program (AGS-1355339).
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    Baleen whale acoustic presence and behaviour at a Mid-Atlantic migratory habitat, the Azores Archipelago (2020)
    Nature Research
    Details
    Publication Date: 2022-05-26
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Romagosa, M., Baumgartner, M., Cascão, I., Lammers, M. O., Marques, T. A., Santos, R. S., & Silva, M. A. Baleen whale acoustic presence and behaviour at a Mid-Atlantic migratory habitat, the Azores Archipelago. Scientific Reports, 10(1), (2020): 4766, doi: 10.1038/s41598-020-61849-8.
    Description: The identification of important areas during the annual life cycle of migratory animals, such as baleen whales, is vital for their conservation. In boreal springtime, fin and blue whales feed in the Azores on their way to northern latitudes while sei whales migrate through the archipelago with only occasional feeding. Little is known about their autumn or winter presence or their acoustic behaviour in temperate migratory habitats. This study used a 5-year acoustic data set collected by autonomous recorders in the Azores that were processed and analysed using an automated call detection and classification system. Fin and blue whales were acoustically present in the archipelago from autumn to spring with marked seasonal differences in the use of different call types. Diel patterns of calling activity were only found for fin whales with more calls during the day than night. Sei whales showed a bimodal distribution of acoustic presence in spring and autumn, corresponding to their expected migration patterns. Diel differences in sei whale calling varied with season and location. This work highlights the importance of the Azores as a migratory and wintering habitat for three species of baleen whales and provides novel information on their acoustic behaviour in a mid-Atlantic region.
    Description: This work was supported by Fundação para a Ciência e Tecnologia (FCT), Azores 2020 Operational Programme and Fundo Regional da Ciência e Tecnologia (FRCT) through research projects TRACE (PTDC/MAR/74071/2006), MAPCET (M2.1.2/F/012/2011) and AWARENESS (PTDC/BIA-BMA/30514/201), co-funded by FEDER, COMPETE, QREN, POPH, ERDF, ESF, the Lisbon Regional Operational Programme, and the Portuguese Ministry for Science and Education. Funding for publication fees was provided by Project AWARENESS (PTDC/BIA-BMA/30514/201). Okeanos R&D Centre is supported by FCT, through the strategic fund (UIDB/05634/2020). MR was supported by a DRCT doctoral grant (M3.1.a/F/028/2015) and MAS by an FCT-Investigator contract (IF/00943/2013). TAM thanks partial support by CEAUL (funded by FCT - Fundação para a Ciência e a Tecnologia, Portugal, through the project UID/MAT/00006/2013). We are grateful to Rui Prieto, Sérgio Gómez, Norberto Serpa, skilled skippers and crew that participated in the preparation and deployment of EARs at DOP/IMAR and to Ken Sexton and Michael Richlen for their roles in manufacturing the EARs. We are also grateful to Dr. Helena Silva for her feedback on statistical analysis.
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    Atmospheric convection and air-sea interactions over the tropical oceans: scientific progress, challenges, and opportunities (2020)
    American Meteorological Society
    Details
    Publication Date: 2022-05-26
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Hagos, S., Foltz, G. R., Zhang, C., Thompson, E., Seo, H., Chen, S., Capotondi, A., Reed, K. A., DeMott, C., & Protat, A. Atmospheric convection and air-sea interactions over the tropical oceans: scientific progress, challenges, and opportunities. Bulletin of the American Meteorological Society, 101(3), (2020): E253-E258, doi:10.1175/BAMS-D-19-0261.1.
    Description: Over the past 30 years, the scientific community has made considerable progress in understanding and predicting tropical convection and air–sea interactions, thanks to sustained investments in extensive in situ and remote sensing observations, targeted field experiments, advances in numerical modeling, and vastly improved computational resources and observing technologies. Those investments would not have been fruitful as isolated advancements without the collaborative effort of the atmospheric convection and air–sea interaction research communities. In this spirit, a U.S.- and International CLIVAR–sponsored workshop on “Atmospheric convection and air–sea interactions over the tropical oceans” was held in the spring of 2019 in Boulder, Colorado. The 90 participants were observational and modeling experts from the atmospheric convection and air–sea interactions communities with varying degrees of experience, from early-career researchers and students to senior scientists. The presentations and discussions covered processes over the broad range of spatiotemporal scales (Fig. 1).
    Description: The workshop was sponsored by the United States and International CLIVAR. Funding was provided by the U.S. Department of Energy, Office of Naval Research, NOAA, NSF, and the World Climate Research Programme. We thank Mike Patterson, Jennie Zhu, and Jeff Becker from the U.S. CLIVAR Project Office for coordinating the workshop.
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    Cover crops and chicken grazing in a winter fallow field improve soil carbon and nitrogen contents and decrease methane emissions (2020)
    Nature Research
    Details
    Publication Date: 2022-05-26
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Zheng, H., Zhou, L., Wei, J., Tang, Q., Zou, Y., Tang, J., & Xu, H. Cover crops and chicken grazing in a winter fallow field improve soil carbon and nitrogen contents and decrease methane emissions. Scientific Reports, 10(1), (2020): 12607, doi:10.1038/s41598-020-69407-y.
    Description: Using symbiotic farming methods [cover crops and chicken grazing (+ C)] in a winter fallow field, we found that the soil organic matter and total nitrogen of the + C treatment were 5.2% and 26.6% higher, respectively, than those of a treatment with cover crops and no chicken grazing (− C). The annual rice grain yield of the + C treatment was 3.8% higher than that of the − C treatment and 12.3% higher than that of the bare fallow field (CK), while the annual CH4 emissions of the + C treatment were 26.9% lower than those of the − C treatment and 10.6% lower than those of the CK treatment. The 100-year global warming potential of the + C treatment was 6.2% lower than that of the − C treatment. Therefore, the use of winter cover crops and chicken grazing in a winter fallow field was effective at reducing CH4 emissions and significantly improving soil nutrients and rice yield.
    Description: This study was supported by the Earmarked Fund for China Agriculture Research System (CARS-01-26), the China-UK joint Red Soil Critical Zone project from the National Natural Science Foundation of China (Grant No. 41571130053), and Hunan “A Hundred Scholars” Program.
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    Genetic tool development in marine protists: emerging model organisms for experimental cell biology (2020)
    Nature Research
    Details
    Publication Date: 2022-05-26
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Faktorova, D., Nisbet, R. E. R., Robledo, J. A. F., Casacuberta, E., Sudek, L., Allen, A. E., Ares, M., Jr., Areste, C., Balestreri, C., Barbrook, A. C., Beardslee, P., Bender, S., Booth, D. S., Bouget, F., Bowler, C., Breglia, S. A., Brownlee, C., Burger, G., Cerutti, H., Cesaroni, R., Chiurillo, M. A., Clemente, T., Coles, D. B., Collier, J. L., Cooney, E. C., Coyne, K., Docampo, R., Dupont, C. L., Edgcomb, V., Einarsson, E., Elustondo, P. A., Federici, F., Freire-Beneitez, V., Freyria, N. J., Fukuda, K., Garcia, P. A., Girguis, P. R., Gomaa, F., Gornik, S. G., Guo, J., Hampl, V., Hanawa, Y., Haro-Contreras, E. R., Hehenberger, E., Highfield, A., Hirakawa, Y., Hopes, A., Howe, C. J., Hu, I., Ibanez, J., Irwin, N. A. T., Ishii, Y., Janowicz, N. E., Jones, A. C., Kachale, A., Fujimura-Kamada, K., Kaur, B., Kaye, J. Z., Kazana, E., Keeling, P. J., King, N., Klobutcher, L. A., Lander, N., Lassadi, I., Li, Z., Lin, S., Lozano, J., Luan, F., Maruyama, S., Matute, T., Miceli, C., Minagawa, J., Moosburner, M., Najle, S. R., Nanjappa, D., Nimmo, I. C., Noble, L., Vanclova, A. M. G. N., Nowacki, M., Nunez, I., Pain, A., Piersanti, A., Pucciarelli, S., Pyrih, J., Rest, J. S., Rius, M., Robertson, D., Ruaud, A., Ruiz-Trillo, I., Sigg, M. A., Silver, P. A., Slamovits, C. H., Smith, G. J., Sprecher, B. N., Stern, R., Swart, E. C., Tsaousis, A. D., Tsypin, L., Turkewitz, A., Turnsek, J., Valach, M., Verge, V., von Dassow, P., von der Haar, T., Waller, R. F., Wang, L., Wen, X., Wheeler, G., Woods, A., Zhang, H., Mock, T., Worden, A. Z., & Lukes, J. Genetic tool development in marine protists: emerging model organisms for experimental cell biology. Nature Methods, 17, (2020): 481-494, doi:10.1038/s41592-020-0796-x.
    Description: Diverse microbial ecosystems underpin life in the sea. Among these microbes are many unicellular eukaryotes that span the diversity of the eukaryotic tree of life. However, genetic tractability has been limited to a few species, which do not represent eukaryotic diversity or environmentally relevant taxa. Here, we report on the development of genetic tools in a range of protists primarily from marine environments. We present evidence for foreign DNA delivery and expression in 13 species never before transformed and for advancement of tools for eight other species, as well as potential reasons for why transformation of yet another 17 species tested was not achieved. Our resource in genetic manipulation will provide insights into the ancestral eukaryotic lifeforms, general eukaryote cell biology, protein diversification and the evolution of cellular pathways.
    Description: We thank M. Salisbury and D. Lacono, C. Poirier, M. Hamilton, C. Eckmann, H. Igel, C. Yung and K. Hoadley for assistance; V.K. Nagarajan, M. Accerbi and P.J. Green who carried out Agrobacterium studies in Heterosigma akashiwo, and N. Kraeva, C. Bianchi and V. Yurchenko for the help with designing the p57-V5+NeoR construct. We are also grateful to the protocols.io team (L. Teytelman and A. Broellochs) for their support. This collaborative effort was supported by the Gordon and Betty Moore Foundation EMS Program of the Marine Microbiology Initiative (grant nos. GBMF4972 and 4972.01 to F.-Y.B.; GBMF4970 and 4970.01 to M.A. and A.Z.W.; GBMF3788 to A.Z.W.; GBMF 4968 and 4968.01 to H.C.; GBMF4984 to V.H.; GBMF4974 and 4974.01 to C. Brownlee; GBMF4964 to Y. Hirakawa; GBMF4961 to T. Mock; GBMF4958 to P.S.; GBMF4957 to A.T.; GBMF4960 to G.J.S.; GBMF4979 to K.C.; GBMF4982 and 4982.01 to J.L.C.; GBMF4964 to P.J.K.; GBMF4981 to P.v.D.; GBMF5006 to A.E.A.; GBMF4986 to C.M.; GBMF4962 to J.A.F.R.; GBMF4980 and 4980.01 to S.L.; GBMF 4977 and 4977.01 to R.F.W.; GBMF4962.01 to C.H.S.; GBMF4985 to J.M.; GBMF4976 and 4976.01 to C.H.; GBMF4963 and 4963.01 to V.E.; GBMF5007 to C.L.D.; GBMF4983 and 4983.01 to J.L.; GBMF4975 and 4975.01 to A.D.T.; GBMF4973 and 4973.01 to I.R.-T. and GBMF4965 to N.K.), by The Leverhulme Trust (RPG-2017-364) to T. Mock and A. Hopes, and by ERD funds (16_019/0000759) from the Czech Ministry of Education to J.L.
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    Spiny lobster sounds can be detectable over kilometres underwater (2020)
    Nature Research
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    Publication Date: 2022-05-26
    Description: The detection ranges of broadband sounds produced by marine invertebrates are not known. To address this deficiency, a linear array of hydrophones was built in a shallow water area to experimentally investigate the propagation features of the sounds from various sizes of European spiny lobsters (Palinurus elephas), recorded between 0.5 and 100 m from the animals. The peak-to-peak source levels (SL, measured at one meter from the animals) varied significantly with body size, the largest spiny lobsters producing SL up to 167 dB re 1 µPa2. The sound propagation and its attenuation with the distance were quantified using the array. This permitted estimation of the detection ranges of spiny lobster sounds. Under the high ambient noise conditions recorded in this study, the sounds propagated between 5 and 410 m for the smallest and largest spiny lobsters, respectively. Considering lower ambient noise levels and different realistic propagation conditions, spiny lobster sounds can be detectable up to several kilometres away from the animals, with sounds from the largest individuals propagating over 3 km. Our results demonstrate that sounds produced by P. elephas can be utilized in passive acoustic programs to monitor and survey this vulnerable species at kilometre scale in coastal waters.
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Jezequel, Y., Chauvaud, L., & Bonnel, J. Spiny lobster sounds can be detectable over kilometres underwater. Scientific Reports, 10(1), (2020): 7943, doi:10.1038/s41598-020-64830-7.
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    The modulation of Gulf Stream influence on the troposphere by the eddy-driven jet (2020)
    American Meteorological Society
    Details
    Publication Date: 2022-05-26
    Description: Author Posting. © American Meteorological Society, 2020. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Climate 33(10), (2020): 4109-4120, doi:10.1175/JCLI-D-19-0294.1.
    Description: This study suggests that the Gulf Stream influence on the wintertime North Atlantic troposphere is most pronounced when the eddy-driven jet (EDJ) is farthest south and better collocated with the Gulf Stream. Using the reanalysis dataset NCEP-CFSR for December–February 1979–2009, the daily EDJ latitude is separated into three regimes (northern, central, and southern). It is found that the average trajectory of atmospheric fronts covaries with EDJ latitude. In the southern EDJ regime (~19% of the time), the frequency of near-surface atmospheric fronts that pass across the Gulf Stream is maximized. Analysis suggests that this leads to significant strengthening in near-surface atmospheric frontal convergence resulting from strong air–sea sensible heat flux gradients (due to strong temperature gradients in the atmosphere and ocean). In recent studies, it was shown that the pronounced band of time-mean near-surface wind convergence across the Gulf Stream is set by atmospheric fronts. Here, it is shown that an even smaller subset of atmospheric fronts—those associated with a southern EDJ—primarily sets the time mean, due to enhanced Gulf Stream air–sea interaction. Furthermore, statistically significant anomalies in vertical velocity extending well above the boundary layer are identified in association with changes in EDJ latitude. These anomalies are particularly strong for a southern EDJ and are spatially consistent with increases in near-surface atmospheric frontal convergence over the Gulf Stream. These results imply that much of the Gulf Stream influence on the time-mean atmosphere is modulated on synoptic time scales, and enhanced when the EDJ is farthest south.
    Description: For part of this study, R. P. was funded by the Weston Howland Jr. postdoctoral scholarship at Woods Hole Oceanographic Institution. We gratefully acknowledge the support to Y.-O. K. from the NOAA CPO Climate Variability and Predictability program (NA13OAR4310139), the DOE Regional and Global Model Analysis program (DE-SC0014433 and DE-SC0019492), and the NSF AGS Climate and Large-scale Dynamics program and OCE Physical Oceanography program (AGS-1355339). We thank NCAR for allowing access to the NCEP-CFSR dataset, accessible at https://rda.ucar.edu. We thank the editor Hisashi Nakamura and the three reviewers whose comments have helped greatly improve the manuscript.
    Description: 2020-10-13
    Keywords: Atmosphere-ocean interaction ; Atmosphere-ocean interaction
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    Author correction: the solute carrier SLC9C1 is a Na(+)/H(+)-exchanger gated by an S4-type voltage-sensor and cyclic-nucleotide binding (2020)
    Nature Research
    Details
    Publication Date: 2022-05-26
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Windler, F., Bönigk, W., Körschen, H. G., Grahn, E., Strünker, T., Seifert, R., & Kaupp, U. B. Author correction: the solute carrier SLC9C1 is a Na(+)/H(+)-exchanger gated by an S4-type voltage-sensor and cyclic-nucleotide binding. Nature Communications, 11(1),(2020): 4210, doi:10.1038/s41467-020-18023-5.
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    The Iceland-Faroe slope jet: a conduit for dense water toward the Faroe Bank Channel overflow (2020)
    Nature Research
    Details
    Publication Date: 2022-05-26
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Semper, S., Pickart, R. S., Vage, K., Larsen, K. M. H., Hatun, H., & Hansen, B. The Iceland-Faroe slope jet: a conduit for dense water toward the Faroe Bank Channel overflow. Nature Communications, 11(1), (2020): 5390, doi:10.1038/s41467-020-19049-5.
    Description: Dense water from the Nordic Seas passes through the Faroe Bank Channel and supplies the lower limb of the Atlantic Meridional Overturning Circulation, a critical component of the climate system. Yet, the upstream pathways of this water are not fully known. Here we present evidence of a previously unrecognised deep current following the slope from Iceland toward the Faroe Bank Channel using high-resolution, synoptic shipboard observations and long-term measurements north of the Faroe Islands. The bulk of the volume transport of the current, named the Iceland-Faroe Slope Jet (IFSJ), is relatively uniform in hydrographic properties, very similar to the North Icelandic Jet flowing westward along the slope north of Iceland toward Denmark Strait. This suggests a common source for the two major overflows across the Greenland-Scotland Ridge. The IFSJ can account for approximately half of the total overflow transport through the Faroe Bank Channel, thus constituting a significant component of the overturning circulation in the Nordic Seas.
    Description: Support for this work was provided by the Bergen Research Foundation Grant BFS2016REK01 (S.S. and K.V.), the U.S. National Science Foundation Grants OCE-1558742 and OCE-1259618 (R.S.P.), the Danish Ministry of Climate, Energy and Utilities (K.M.H.L., H.H., and B.H.) and the European Union’s Horizon 2020 research and innovation programme under grant agreement 727852 (Blue-Action) (K.M.H.L., H.H., and B.H.).
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    Accuracy of wind observations from open-ocean buoys: correction for flow distortion (2020)
    American Meteorological Society
    Details
    Publication Date: 2022-05-26
    Description: Author Posting. © American Meteorological Society, 2020. This article is posted here by permission of [publisher] for personal use, not for redistribution. The definitive version was published in Schlundt, M., Farrar, J. T., Bigorre, S. P., Plueddemann, A. J., & Weller, R. A. (2020). Accuracy of wind observations from open-ocean buoys: correction for flow distortion. Journal of Atmospheric and Oceanic Technology, 37(4), 687-703, doi:10.1175/JTECH-D-19-0132.1.
    Description: The comparison of equivalent neutral winds obtained from (i) four WHOI buoys in the subtropics and (ii) scatterometer estimates at those locations reveals a root-mean-square (RMS) difference of 0.56–0.76 m s−1. To investigate this RMS difference, different buoy wind error sources were examined. These buoys are particularly well suited to examine two important sources of buoy wind errors because 1) redundant anemometers and a comparison with numerical flow simulations allow us to quantitatively assess flow distortion errors, and 2) 1-min sampling at the buoys allows us to examine the sensitivity of buoy temporal sampling/averaging in the buoy–scatterometer comparisons. The interanemometer difference varies as a function of wind direction relative to the buoy wind vane and is consistent with the effects of flow distortion expected based on numerical flow simulations. Comparison between the anemometers and scatterometer winds supports the interpretation that the interanemometer disagreement, which can be up to 5% of the wind speed, is due to flow distortion. These insights motivate an empirical correction to the individual anemometer records and subsequent comparison with scatterometer estimates show good agreement.
    Description: We gratefully acknowledge the help of three anonymous reviewers, whose input greatly improved the paper. In particular, one reviewer pointed out a mistake in our initial interpretation of scatterometer stability, which was corrected in the final manuscript. JTF and MS were supported by NASA Grant NNX14AM71G (International Ocean Vector Winds Science Team). The SPURS observations were supported by NASA (Grants NNX11AE84G, NNX15AG20G, and 80NSSC18K1494). The Stratus, NTAS, and WHOTS ocean reference stations (ORS) are long-term surface moorings deployed as part of the OceanSITES (http://www.oceansites.org) component of the Global Ocean Observing System, and are supported by NOAA’s Climate Program Office’s Ocean Observing and Monitoring Division, as are RAW, AJP, and SPB through the Cooperative Institute for the North Atlantic Region (CINAR) under Cooperative Agreement NA14OAR4320158 with NOAA Climate Program Office (CPO) (FundRef No. 100007298). The technical staff of the UOP Group at WHOI and the crews of NOAA and UNOLS vessels have been essential to the successful long-term maintenance of the ORS.
    Keywords: Ocean ; Wind ; Buoy observations ; Remote sensing
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    A barotropic vorticity budget for the subtropical North Atlantic based on observations (2020)
    American Meteorological Society
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    Publication Date: 2022-05-26
    Description: Author Posting. © American Meteorological Society, 2019. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 49(11), (2019): 2781-2797, doi: 10.1175/JPO-D-19-0111.1.
    Description: To ground truth the large-scale dynamical balance of the North Atlantic subtropical gyre with observations, a barotropic vorticity budget is constructed in the ECCO state estimate and compared with hydrographic observations and wind stress data products. The hydrographic dataset at the center of this work is the A22 WOCE section, which lies along 66°W and creates a closed volume with the North and South American coasts to its west. The planetary vorticity flux across A22 is quantified, providing a metric for the net meridional flow in the western subtropical gyre. The wind stress forcing over the subtropical gyre to the west and east of the A22 section is calculated from several wind stress data products. These observational budget terms are found to be consistent with an approximate barotropic Sverdrup balance in the eastern subtropical gyre and are on the same order as budget terms in the ECCO state estimate. The ECCO vorticity budget is closed by bottom pressure torques in the western subtropical gyre, which is consistent with previous studies. In sum, the analysis provides observational ground truth for the North Atlantic subtropical vorticity balance and explores the seasonal variability of this balance for the first time using the ECCO state estimate. This balance is found to hold on monthly time scales in ECCO, suggesting that the integrated subtropical gyre responds to forcing through fast barotropic adjustment.
    Description: We thank Alonso Hernández-Guerra, M. Dolores Pérez-Hernández, and María Casanova-Masjoan for providing the inverse model results from Casanova-Masjoan et al. (2018). The A22 section is part of the WOCE/CLIVAR observing effort, with all data available at http://cchdo.ucsd.edu/. We thank Carl Wunsch, Patrick Heimbach, Chris Hill, and Diana Lees Spiegel for their assistance with the ECCO fields. The state estimates were provided by the ECCO Consortium for Estimating the Circulation and Climate of the Ocean funded by the National Oceanographic Partnership Program (NOPP) and can be downloaded at http://www.ecco-group.org/products.htm. The citable URL for the ECCO version 4 release 2 product is http://hdl.handle.net/1721.1/102062. We are grateful to Joseph Pedlosky and Glenn Flierl for their comments on an earlier version of this work. IALB and JMT were supported financially by U.S. NSF Grants OCE-0726720, 1332667, and 1332834. MS was supported by the U.S. NASA Sea Level Change Team (Contract NNX14AJ51G) and through the ECCO Consortium funding via the Jet Propulsion Laboratory. We thank two anonymous reviewers, whose thoughtful comments led to improvements.
    Description: 2020-04-17
    Keywords: North Atlantic Ocean ; Barotropic flows ; Boundary currents ; Ocean circulation ; Gyres ; Vorticity
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    Role of residual overturning for the sensitivity of Southern Ocean isopycnal slopes to changes in wind forcing (2020)
    American Meteorological Society
    Details
    Publication Date: 2022-05-26
    Description: Author Posting. © American Meteorological Society, 2019. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 49(11), (2019): 2867-2881, doi: 10.1175/JPO-D-19-0072.1.
    Description: The Antarctic Circumpolar Current plays a central role in the ventilation of heat and carbon in the global ocean. In particular, the isopycnal slopes determine where each water mass outcrops and thus how the ocean interacts with the atmosphere. The region-integrated isopycnal slopes have been suggested to be eddy saturated, that is, stay relatively constant as the wind forcing changes, but whether or not the flow is saturated in realistic present day and future parameter regimes is unknown. This study analyzes an idealized two-layer quasigeostrophic channel model forced by a wind stress and a residual overturning generated by a mass flux across the interface between the two layers, with and without a blocking ridge. The sign and strength of the residual overturning set which way the isopycnal slopes change with the wind forcing, leading to an increase in slope with an increase in wind forcing for a positive overturning and a decrease in slope for a negative overturning, following the usual conventions; this behavior is caused by the dominant standing meander weakening as the wind stress weakens causing the isopycnal slopes to become more sensitive to changes in the wind stress and converge with the slopes of a flat-bottomed simulation. Eddy saturation only appears once the wind forcing passes a critical level. These results show that theories for saturation must have both topography and residual overturning in order to be complete and provide a framework for understanding how the isopycnal slopes in the Southern Ocean may change in response to future changes in wind forcing.
    Description: MKY and RF acknowledge support through NSF Awards OCE-1536515 and AGS-1835576. MKY acknowledges funding from NDSEG. GRF was supported by NSF OCE-1459702. We are very grateful for conversations with David Marshall, Andrew Stewart, and two anonymous reviewers that greatly improved the manuscript. The code for running the model is found at https://github.com/mkyoungs/JPO-QG-Channel.
    Description: 2020-04-30
    Keywords: Southern Ocean ; Eddies ; Storm tracks ; Quasigeostrophic models
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    Latitudinal distributions and controls of bacterial community composition during the summer of 2017 in western Arctic surface waters (from the Bering Strait to the Chukchi Borderland) (2020)
    Nature Research
    Details
    Publication Date: 2022-05-26
    Description: © The Author(s), 2019. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Lee, J., Kang, S. H., Yang, E. J., Macdonald, A. M., Joo, H. M., Park, J., Kim, K., Lee, G. S., Kim, J. H., Yoon, J. E., Kim, S. S., Lim, J. H., & Kim, I. N. Latitudinal distributions and controls of bacterial community composition during the summer of 2017 in western Arctic surface waters (from the Bering Strait to the Chukchi Borderland). Scientific Reports, 9(1), (2019): 16822, doi: 10.1038/s41598-019-53427-4.
    Description: The western Arctic Ocean is experiencing some of the most rapid environmental changes in the Arctic. However, little is known about the microbial community response to these changes. Employing observations from the summer of 2017, this study investigated latitudinal variations in bacterial community composition in surface waters between the Bering Strait and Chukchi Borderland and the factors driving the changes. Results indicate three distinctive communities. Southern Chukchi bacterial communities are associated with nutrient rich conditions, including genera such as Sulfitobacter, whereas the northern Chukchi bacterial community is dominated by SAR clades, Flavobacterium, Paraglaciecola, and Polaribacter genera associated with low nutrients and sea ice conditions. The frontal region, located on the boundary between the southern and northern Chukchi, is a transition zone with intermediate physical and biogeochemical properties; however, bacterial communities differed markedly from those found to the north and south. In the transition zone, Sphingomonas, with as yet undetermined ecological characteristics, are relatively abundant. Latitudinal distributions in bacterial community composition are mainly attributed to physical and biogeochemical characteristics, suggesting that these communities are susceptible to Arctic environmental changes. These findings provide a foundation to improve understanding of bacterial community variations in response to a rapidly changing Arctic Ocean.
    Description: This research was a part of the project titled the Korea-Arctic Ocean Observing System project (K-AOOS) (KOPRI, 20160245) funded by the Ministry of Oceans and Fisheries, Korea. This work was also supported by a grant from the National Institute of Fisheries Science in Republic of Korea (R2019024) and the National Research Foundation of Korea (NRF) grant funded by the Korea government (MSIT) (NRF-2019R1F1A1051790&NRF-2019R1A4A1026423).
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    Wave-current interaction between Hurricane Matthew wave fields and the Gulf Stream (2020)
    American Meteorological Society
    Details
    Publication Date: 2022-05-26
    Description: Author Posting. © American Meteorological Society, 2019. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 49(11), (2019): 2883-2900, doi: 10.1175/JPO-D-19-0124.1.
    Description: Hurricanes interact with the Gulf Stream in the South Atlantic Bight (SAB) through a wide variety of processes, which are crucial to understand for prediction of open-ocean and coastal hazards during storms. However, it remains unclear how waves are modified by large-scale ocean currents under storm conditions, when waves are aligned with the storm-driven circulation and tightly coupled to the overlying wind field. Hurricane Matthew (2016) impacted the U.S. Southeast coast, causing extensive coastal change due to large waves and elevated water levels. The hurricane traveled on the continental shelf parallel to the SAB coastline, with the right side of the hurricane directly over the Gulf Stream. Using the Coupled Ocean–Atmosphere–Wave–Sediment Transport modeling system, we investigate wave–current interaction between Hurricane Matthew and the Gulf Stream. The model simulates ocean currents and waves over a grid encompassing the U.S. East Coast, with varied coupling of the hydrodynamic and wave components to isolate the effect of the currents on the waves, and the effect of the Gulf Stream relative to storm-driven circulation. The Gulf Stream modifies the direction of the storm-driven currents beneath the right side of the hurricane. Waves transitioned from following currents that result in wave lengthening, through negative current gradients that result in wave steepening and dissipation. Wave–current interaction over the Gulf Stream modified maximum coastal total water levels and changed incident wave directions at the coast by up to 20°, with strong implications for the morphodynamic response and stability of the coast to the hurricane.
    Description: C.A. Hegermiller is grateful to the Woods Hole Oceanographic Institution (WHOI) Postdoctoral Scholarship program and the WHOI-U.S. Geological Survey (USGS) cooperative agreement for support. This project was supported by the USGS Coastal and Marine Hazards and Resources Program and by the Office of Naval Research, Increasing the Fidelity of Morphological Storm Impact Predictions Project. Thank you to the internal and external reviewers for improving the quality of this work, and to conversations within the Woods Hole community during the development of the experiment and analysis of the results. Model data can be found at http://geoport.whoi.edu/thredds/catalog/sand/usgs/users/chegermiller/projects/WCI_JPO_2019/catalog.html. Figure color maps are from Thyng et al. (2016).
    Description: 2020-05-01
    Keywords: Hurricanes ; Waves, oceanic ; Coupled models
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    The beta-oxidation pathway is downregulated during diapause termination in Calanus copepods (2020)
    Nature Research
    Details
    Publication Date: 2022-05-26
    Description: © The Author(s), 2019. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Skottene, E., Tarrant, A. M., Olsen, A. J., Altin, D., Ostensen, M., Hansen, B. H., Choquet, M., Jenssen, B. M., & Olsen, R. E. R. The beta-oxidation pathway is downregulated during diapause termination in Calanus copepods. Scientific Reports, 9, (2019): 16686, doi: 10.1038/s41598-019-53032-5.
    Description: Calanus copepods are keystone species in marine ecosystems, mainly due to their high lipid content, which is a nutritious food source for e.g. juvenile fish. Accumulated lipids are catabolized to meet energy requirements during dormancy (diapause), which occurs during the last copepodite stage (C5). The current knowledge of lipid degradation pathways during diapause termination is limited. We characterized changes in lipid fullness and generated transcriptional profiles in C5s during termination of diapause and progression towards adulthood. Lipid fullness of C5s declined linearly during developmental progression, but more β-oxidation genes were upregulated in early C5s compared to late C5s and adults. We identified four possible master regulators of energy metabolism, which all were generally upregulated in early C5s, compared to late C5s and adults. We discovered that one of two enzymes in the carnitine shuttle is absent from the calanoid copepod lineage. Based on the geographical location of the sampling site, the field-samples were initially presumed to consist of C. finmarchicus. However, the identification of C. glacialis in some samples underlines the need for performing molecular analyses to reliably identify Calanus species. Our findings contributes to a better understanding of molecular events occurring during diapause and diapause termination in calanoid copepods.
    Description: The authors wish to thank Dept. of Biology at Norwegian University of Science and Technology (NTNU) for additional funding for Elise Skottene´s stay at Woods Hole Oceanographic Institution (WHOI), Christoffer H. Hilde for help in the field and in the lab, Siv Anina Etter, Øystein Leiknes, Sofia Soloperto and Clara Igisch for help with the field work, Justyna Świeżak and Signe D. Løvmo for experimental assistance, Hanny Rivera for help with bioinformatic analyses at WHOI. The RNA seq work was provided by the Genomics Core Facility (GCF). GCF is funded by the Faculty of Medicine and Health Sciences at NTNU and Central Norway Regional Health Authority. Ann M. Tarrant was funded by the National Science Foundation (Award Number OPP-1746087).
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    Energy fluxes in coastal trapped waves (2020)
    American Meteorological Society
    Details
    Publication Date: 2022-05-26
    Description: Author Posting. © American Meteorological Society, 2019. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 49(12), (2019): 3061-3068, doi: 10.1175/JPO-D-18-0172.1.
    Description: The calculation of energy flux in coastal trapped wave modes is reviewed in the context of tidal energy pathways near the coast. The significant barotropic pressures and currents associated with coastal trapped wave modes mean that large errors in estimating the wave flux are incurred if only the baroclinic component is considered. A specific example is given showing that baroclinic flux constitutes only 10% of the flux in a mode-1 wave for a reasonable choice of stratification and bathymetry. The interpretation of baroclinic energy flux and barotropic-to-baroclinic conversion at the coast is discussed: in contrast to the open ocean, estimates of baroclinic energy flux do not represent a wave energy flux; neither does conversion represent the scattering of energy from the tidal Kelvin wave to higher modes.
    Description: This work was supported by the Postdoctoral Scholar Program at the Woods Hole Oceanographic Institution, with funding provided by the Weston Howland Jr. Postdoctoral Scholarship, and by NSF under Grant OCE-1756781. I am grateful to K. Brink for the many useful conversations that contributed to this work and to J. Toole for providing detailed comments on an early version of this paper. The comments of three anonymous reviewers were very helpful in improving this paper.
    Description: 2020-06-03
    Keywords: Diapycnal mixing ; Internal waves ; Kelvin waves ; Topographic effects ; Waves, oceanic ; Tides
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    Persistent turbulence in the Samoan Passage (2020)
    American Meteorological Society
    Details
    Publication Date: 2022-05-26
    Description: © The Author(s), 2019. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Cusack, J. M., Voet, G., Alford, M. H., Girton, J. B., Carter, G. S., Pratt, L. J., Pearson-Potts, K. A., & Tan, S. Persistent turbulence in the Samoan Passage. Journal of Physical Oceanography, 49(12), (2019): 3179-3197, doi: 10.1175/JPO-D-19-0116.1.
    Description: Abyssal waters forming the lower limb of the global overturning circulation flow through the Samoan Passage and are modified by intense mixing. Thorpe-scale-based estimates of dissipation from moored profilers deployed on top of two sills for 17 months reveal that turbulence is continuously generated in the passage. Overturns were observed in a density band in which the Richardson number was often smaller than ¼, consistent with shear instability occurring at the upper interface of the fast-flowing bottom water layer. The magnitude of dissipation was found to be stable on long time scales from weeks to months. A second array of 12 moored profilers deployed for a shorter duration but profiling at higher frequency was able to resolve variability in dissipation on time scales from days to hours. At some mooring locations, near-inertial and tidal modulation of the dissipation rate was observed. However, the modulation was not spatially coherent across the passage. The magnitude and vertical structure of dissipation from observations at one of the major sills is compared with an idealized 2D numerical simulation that includes a barotropic tidal forcing. Depth-integrated dissipation rates agree between model and observations to within a factor of 3. The tide has a negligible effect on the mean dissipation. These observations reinforce the notion that the Samoan Passage is an important mixing hot spot in the global ocean where waters are being transformed continuously.
    Description: The authors thank Zhongxiang Xao and Jody Klymak, who provided earlier setups of the numerical model, and also Arjun Jagannathan for insightful discussions on the subject of flow over topography. We also thank John Mickett and Eric Boget for their assistance in designing, deploying, and recovering the moorings. In addition, we also thank the crew and scientists aboard the R/V Revelle and R/V Thompson, without whom the data presented in this paper could not have been gathered. Ilker Fer and two anonymous reviewers provided thoughtful feedback that improved the paper. This work was supported by the National Science Foundation under Grants OCE-1029268, OCE-1029483, OCE-1657264, OCE-1657795, OCE-1657870, and OCE-1658027.
    Keywords: Gravity waves ; Turbulence ; Abyssal circulation ; Mixing ; Tides
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    Glacial-interglacial Nd isotope variability of North Atlantic Deep Water modulated by North American ice sheet (2020)
    Nature Research
    Details
    Publication Date: 2022-05-26
    Description: © The Author(s), 2019. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Zhao, N., Oppo, D. W., Huang, K., Howe, J. N. W., Blusztajn, J., & Keigwin, L. D. Glacial-interglacial Nd isotope variability of North Atlantic Deep Water modulated by North American ice sheet. Nature Communications, 10, (2019): 5773, doi: 10.1038/s41467-019-13707-z.
    Description: The Nd isotope composition of seawater has been used to reconstruct past changes in the contribution of different water masses to the deep ocean. In the absence of contrary information, the Nd isotope compositions of endmember water masses are usually assumed constant during the Quaternary. Here we show that the Nd isotope composition of North Atlantic Deep Water (NADW), a major component of the global overturning ocean circulation, was significantly more radiogenic than modern during the Last Glacial Maximum (LGM), and shifted towards modern values during the deglaciation. We propose that weathering contributions of unradiogenic Nd modulated by the North American Ice Sheet dominated the evolution of the NADW Nd isotope endmember. If water mass mixing dominated the distribution of deep glacial Atlantic Nd isotopes, our results would imply a larger fraction of NADW in the deep Atlantic during the LGM and deglaciation than reconstructed with a constant northern endmember.
    Description: This study was supported by National Science Foundation grants (OCE 1335191 and OCE 1811305) to D.W.O. We thank Kathryn Pietro and Mary Carman for help with lab work, Steve Galer and Jerry McManus for helpful discussions. L.D.K. acknowledges the Grayce B. Kerr Fund for supporting research cruise KNR198. N.Z. acknowledges supports by a graduate internship from National Ocean Sciences Accelerator Mass Spectrometry facility and a post-doctoral scholarship from Max Planck Institute for Chemistry. K.-F.H. acknowledges funding from Taiwan MOST (MOST 104-2628-M-001-007-MY3).
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    Tropical cyclone rainbands can trigger meteotsunamis (2020)
    Nature Research
    Details
    Publication Date: 2022-05-26
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Shi, L., Olabarrieta, M., Nolan, D. S., & Warner, J. C. Tropical cyclone rainbands can trigger meteotsunamis. Nature Communications, 11(1), (2020): 678, doi:10.1038/s41467-020-14423-9.
    Description: Tropical cyclones are one of the most destructive natural hazards and much of the damage and casualties they cause are flood-related. Accurate characterization and prediction of total water levels during extreme storms is necessary to minimize coastal impacts. While meteotsunamis are known to influence water levels and to produce severe consequences, their impacts during tropical cyclones are underappreciated. This study demonstrates that meteotsunami waves commonly occur during tropical cyclones, and that they can contribute significantly to total water levels. We use an idealized coupled ocean–atmosphere–wave numerical model to analyze tropical cyclone-induced meteotsunami generation and propagation mechanisms. We show that the most extreme meteotsunami events are triggered by inherent features of the structure of tropical cyclones: inner and outer spiral rainbands. While outer distant spiral rainbands produce single-peak meteotsunami waves, inner spiral rainbands trigger longer lasting wave trains on the front side of the tropical cyclones.
    Description: We thank all the developers of COAWST, ROMS, WRF, and SWAN models. D.N. was supported by NSF grant AGS-1654831. We would like to thank Dr. K. Bagamian for her editorial and writing suggestions. We would like to thank Dr. A. Aretxabaleta for the internal US Geological Survey internal revision and suggestions.
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    Comparative transcriptomics of an arctic foundation species, tussock cottongrass (Eriophorum vaginatum), during an extreme heat event (2020)
    Nature Research
    Details
    Publication Date: 2022-05-26
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Mohl, J. E., Fetcher, N., Stunz, E., Tang, J., & Moody, M. L. Comparative transcriptomics of an arctic foundation species, tussock cottongrass (Eriophorum vaginatum), during an extreme heat event. Scientific Reports, 10(1), (2020): 8990, doi:10.1038/s41598-020-65693-8.
    Description: Tussock cottongrass (Eriophorum vaginatum) is a foundation species for much of the arctic moist acidic tundra, which is currently experiencing extreme effects of climate change. The Arctic is facing higher summer temperatures and extreme weather events are becoming more common. We used Illumina RNA-Seq to analyse cDNA libraries for differential expression of genes from leaves of ecologically well-characterized ecotypes of tussock cottongrass found along a latitudinal gradient in the Alaskan Arctic and transplanted into a common garden. Plant sampling was performed on a typical summer day and during an extreme heat event. We obtained a de novo assembly that contained 423,353 unigenes. There were 363 unigenes up-regulated and 1,117 down-regulated among all ecotypes examined during the extreme heat event. Of these, 26 HSP unigenes had 〉log2-fold up-regulation. Several TFs associated with heat stress in previous studies were identified that had 〉log2-fold up- or down-regulation during the extreme heat event (e.g., DREB, NAC). There was consistent variation in DEGs among ecotypes, but not specifically related to whether plants originated from taiga or tundra ecosystems. As the climate changes it is essential to determine ecotypic diversity at the genomic level, especially for widespread species that impact ecosystem function.
    Description: We thank Thomas Parker for providing crucial logistical support at Toolik Field station and Darrel Dech, Stephen Turner, and Mayra Melendez for assistance in field sampling. Funding for this research was provided through the National Science Foundation (NSF/PLR 1418010 to NF, NSF/PLR 1417645 to MLM, NSF/PLR 1417763 to JT) and JEM received funding in part from NIH Grant #5G12RR007592 from the National Center for Research Resources (NCRR)/NIH to UTEP’s Border Biomedical Research Center. Significant logistic support came from Toolik Field Station and the Arctic LTER (NSF/PLR 1637459).
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    EcoCTD for profiling oceanic physical-biological properties from an underway ship (2020)
    American Meteorological Society
    Details
    Publication Date: 2022-05-26
    Description: Author Posting. © American Meteorological Society, 2020. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of the Atmospheric and Oceanic Technology 37(5), (2020): 825-840, doi:10.1175/JTECH-D-19-0145.1.
    Description: The study of ocean dynamics and biophysical variability at submesoscales of O(1) km and O(1) h raises several observational challenges. To address these by underway sampling, we recently developed a towed profiler called the EcoCTD, capable of concurrently measuring both hydrographic and bio-optical properties such as oxygen, chlorophyll fluorescence, and optical backscatter. The EcoCTD presents an attractive alternative to currently used towed platforms due to its light footprint, versatility in the field, and ease of deployment and recovery without cranes or heavy-duty winches. We demonstrate its use for gathering high-quality data at submesoscale spatiotemporal resolution. A dataset of bio-optical and hydrographic properties, collected with the EcoCTD during field trials in 2018, highlights its scientific potential for the study of physical–biological interactions at submesoscales.
    Description: Authors would like to acknowledge Melissa Omand, Ben Pietro, and Jing He for their valuable input during the design phase of the EcoCTD, as well as for their support for deploying the EcoCTD in the field. We are grateful to Eva Alou, Andrea Carbonero, and John Allen for providing calibrated data from the shipboard CTD. Authors would also like to thank Don Peters along with Dynamics System Analysis Ltd. for facilitating access to ProteusDS and providing support in using the software. We are grateful to the crew of the RV Armstrong and NRV Alliance for their support in the field. Development of the EcoCTD is supported by the Office of Naval Research (ONR) through the CALYPSO Departmental Research Initiative (Grant N000141613130). Advanced field testing was supported by Woods Hole Oceanographic Institution internal funding. MATLAB routines for data processing are publicly available at https://github.com/mfreilich1/ecoctd_processing.
    Description: 2020-11-08
    Keywords: Fronts ; Upwelling/downwelling ; Vertical motion ; Data processing ; Profilers ; oceanic ; Quality assurance/control
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    Scaling the laws of thermal imaging-based whale detection (2020)
    American Meteorological Society
    Details
    Publication Date: 2022-05-26
    Description: Author Posting. © American Meteorological Society, 2020. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of the Atmospheric and Oceanic Technology 37(5), (2020): 807-824, doi:10.1175/JTECH-D-19-0054.1.
    Description: Marine mammals are under growing pressure as anthropogenic use of the ocean increases. Ship strikes of large whales and loud underwater sound sources including air guns for marine geophysical prospecting and naval midfrequency sonar are criticized for their possible negative effects on marine mammals. Competent authorities regularly require the implementation of mitigation measures, including vessel speed reductions or shutdown of acoustic sources if marine mammals are sighted in sensitive areas or in predefined exclusion zones around a vessel. To ensure successful mitigation, reliable at-sea detection of animals is crucial. To date, ship-based marine mammal observers are the most commonly implemented detection method; however, thermal (IR) imaging–based automatic detection systems have been used in recent years. This study evaluates thermal imaging–based automatic whale detection technology for its use across different oceans. The performance of this technology is characterized with respect to environmental conditions, and an automatic detection algorithm for whale blows is presented. The technology can detect whales in polar, temperate, and subtropical ocean regimes over distances of up to several kilometers and outperforms marine mammal observers in the number of whales detected. These results show that thermal imaging technology can be used to assist in providing protection for marine mammals against ship strike and acoustic impact across the world’s oceans.
    Description: This work was funded by the Office of Naval Research (ONR) under Award N000141310856, by the Environmental Studies Research Fund (ESRF; esrfunds.org) under Award 2014-03S and by the Alfred-Wegener-Institute Helmholtz Zentrum für Polar- und Meeresforschung. DPZ and OB declare competing financial interests: 1) Patent US8941728B2, DE102011114084B4: A method for automatic real-time marine mammal detection. The patent describes the ideas basic to the automatic whale detection software as used to acquire and process the data presented in this paper. 2) Licensing of the Tashtego automatic whale detection software to the manufacturer of IR sensor. The authors confirm that these competing financial interests did not alter their adherence good scientific practice. We thank P. Abgrall, J. Coffey, K. Keats, B. Mactavish, V. Moulton, and S. Penney-Belbin for data collection or IR image review. We thank S. Besaw, J. Christian, A. Coombs, P. Coombs, W. Costello, T. Elliott, E. Evans, I. Goudie, C. Jones, K. Knowles, R. Martin, A. Murphy, D. and J. Shepherd; and the staffs at the Irish Loop Express, the Myrick Wireless Interpretive Centre, the Mistaken Point Ecological Reserve, and the lighthouse keepers for logistical assistance at our remote field site. We thank D. Boutilier and B. McDonald (DFO) for assisting us in obtaining license to occupy permits for Cape Race. We thank D. Taylor (ESRF Research Manager) for his support.
    Keywords: Ocean ; Instrumentation/sensors ; Remote sensing ; Animal studies ; Field experiments
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    Could the North Pacific Oscillation be modified by the initiation of the East Asian winter monsoon? (2020)
    American Meteorological Society
    Details
    Publication Date: 2022-05-26
    Description: Author Posting. © American Meteorological Society, 2020. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Climate 33(6), (2020): 2389-2406, doi:10.1175/JCLI-D-19-0112.1.
    Description: This study investigates the modulation of North Pacific Oscillation (NPO) variability upon initiation of the East Asian winter monsoon (EAWM). The data show that the initiation of EAWM in the Philippine Sea strongly connects to the southern lobe variability of the NPO in January followed by a basin-scale oceanic Victoria mode pattern. No apparent connection was found for the northern lobe of the NPO when the ENSO signals are removed. The strengthening of the EAWM in November interacts with the Kuroshio front and generates a low-level heating source in the Philippine Sea. Significant Rossby wave sources are then formed in the lower to midtroposphere. Wave ray tracing analyses confirm the atmospheric teleconnection established by the Rossby wave propagation in the mid- to upper troposphere. Analyses of the origin of wave trajectories from the Philippine Sea show a clear eastward propagating pathway that affects the southern lobe of the NPO from the southern lobe of the western Pacific pattern at 500 hPa and above on the time scale of 20 days. No ray trajectories from the lower troposphere can propagate eastward to influence the central-eastern subtropical Pacific. The wave propagation process is further supported by the coupled model experiments.
    Description: We thank three anonymous reviewers for their constructive comments that have helped to improve the clarity of the presentation. This study was supported by the MOST Grants 107-2611-M-002-013-MY4 and 108-2111-M-002-006 -MY3, Taiwan.
    Description: 2020-08-21
    Keywords: Atmosphere-ocean interaction ; ENSO ; Climate variability ; Interannual variability
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    Sinking flux of particulate organic matter in the oceans: Sensitivity to particle characteristics (2020)
    Nature Research
    Details
    Publication Date: 2022-05-26
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Omand, M. M., Govindarajan, R., He, J., & Mahadevan, A. Sinking flux of particulate organic matter in the oceans: Sensitivity to particle characteristics. Scientific Reports, 10(1), (2020): 5582, doi:10.1038/s41598-020-60424-5.
    Description: The sinking of organic particles produced in the upper sunlit layers of the ocean forms an important limb of the oceanic biological pump, which impacts the sequestration of carbon and resupply of nutrients in the mesopelagic ocean. Particles raining out from the upper ocean undergo remineralization by bacteria colonized on their surface and interior, leading to an attenuation in the sinking flux of organic matter with depth. Here, we formulate a mechanistic model for the depth-dependent, sinking, particulate mass flux constituted by a range of sinking, remineralizing particles. Like previous studies, we find that the model does not achieve the characteristic ‘Martin curve’ flux profile with a single type of particle, but instead requires a distribution of particle sizes and/or properties. We consider various functional forms of remineralization appropriate for solid/compact particles, and aggregates with an anoxic or oxic interior. We explore the sensitivity of the shape of the flux vs. depth profile to the choice of remineralization function, relative particle density, particle size distribution, and water column density stratification, and find that neither a power-law nor exponential function provides a definitively superior fit to the modeled profiles. The profiles are also sensitive to the time history of the particle source. Varying surface particle size distribution (via the slope of the particle number spectrum) over 3 days to represent a transient phytoplankton bloom results in transient subsurface maxima or pulses in the sinking mass flux. This work contributes to a growing body of mechanistic export flux models that offer scope to incorporate underlying dynamical and biological processes into global carbon cycle models.
    Description: We thank NSF (OCE 1260080), NASA (NNX16AR48G), and the Ministry of Earth Sciences, Government of India (Monsoon Mission Project on the Bay of Bengal) for support. This work was largely done in 2012 while MMO was a postdoctoral associate at WHOI, during a visit by RG supported by The Mary Sears visiting scholar program to the Woods Hole Oceanographic Institution. Thanks also to Benjamin Hodges for many thoughtful contributions.
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    Transformation and upwelling of bottom water in fracture zone valleys (2020)
    American Meteorological Society
    Details
    Publication Date: 2022-05-26
    Description: Author Posting. © American Meteorological Society, 2020. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 50(3), (2020): 715-726, doi:10.1175/JPO-D-19-0021.1.
    Description: Closing the overturning circulation of bottom water requires abyssal transformation to lighter densities and upwelling. Where and how buoyancy is gained and water is transported upward remain topics of debate, not least because the available observations generally show downward-increasing turbulence levels in the abyss, apparently implying mean vertical turbulent buoyancy-flux divergence (densification). Here, we synthesize available observations indicating that bottom water is made less dense and upwelled in fracture zone valleys on the flanks of slow-spreading midocean ridges, which cover more than one-half of the seafloor area in some regions. The fracture zones are filled almost completely with water flowing up-valley and gaining buoyancy. Locally, valley water is transformed to lighter densities both in thin boundary layers that are in contact with the seafloor, where the buoyancy flux must vanish to match the no-flux boundary condition, and in thicker layers associated with downward-decreasing turbulence levels below interior maxima associated with hydraulic overflows and critical-layer interactions. Integrated across the valley, the turbulent buoyancy fluxes show maxima near the sidewall crests, consistent with net convergence below, with little sensitivity of this pattern to the vertical structure of the turbulence profiles, which implies that buoyancy flux convergence in the layers with downward-decreasing turbulence levels dominates over the divergence elsewhere, accounting for the net transformation to lighter densities in fracture zone valleys. We conclude that fracture zone topography likely exerts a controlling influence on the transformation and upwelling of bottom water in many areas of the global ocean.
    Description: The data used in this study were collected in the context of several projects funded by the U.S. National Science Foundation (NSF), in particular BBTRE (OCE-9415589 and OCE-9415598) and DoMORE (OCE-1235094). Funding for the analysis was provided as part of the NSF DoMORE and DECIMAL (OCE-1735618) projects. Author Ijichi is a Japan Society for the Promotion of Science (JSPS) Overseas Research Fellow. Comments on an early draft of this paper by Jim Ledwell and Bryan Kaiser, as well as topical discussions with Jörn Callies and Trevor McDougall, are gratefully acknowledged. The paper was greatly improved during the review process, in particular because of the critical comments from one of the two anonymous reviewers.
    Keywords: Diapycnal mixing ; Topographic effects ; Turbulence ; Upwelling/downwelling ; Bottom currents/bottom water
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    Characterization of deep-sea benthic invertebrate megafauna of the Galapagos Islands (2020)
    Nature Research
    Details
    Publication Date: 2022-05-26
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Salinas-de-León, P., Martí-Puig, P., Buglass, S., Arnés-Urgellés, C., Rastoin-Laplane, E., Creemers, M., Cairns, S., Fisher, C., O'Hara, T., Ott, B., Raineault, N. A., Reiswig, H., Rouse, G., Rowley, S., Shank, T. M., Suarez, J., Watling, L., Wicksten, M. K., & Marsh, L. Characterization of deep-sea benthic invertebrate megafauna of the Galapagos Islands. Scientific Reports, 10(1), (2020): 13894, doi:10.1038/s41598-020-70744-1.
    Description: The deep sea represents the largest and least explored biome on the planet. Despite the iconic status of the Galapagos Islands and being considered one of the most pristine locations on earth, the deep-sea benthic ecosystems of the archipelago are virtually unexplored in comparison to their shallow-water counterparts. In 2015, we embarked on a multi-disciplinary scientific expedition to conduct the first systematic characterization of deep-sea benthic invertebrate communities of the Galapagos, across a range of habitats. We explored seven sites to depths of over 3,300 m using a two-part Remotely Operated Vehicle (ROV) system aboard the E/V Nautilus, and collected 90 biological specimens that were preserved and sent to experts around the world for analysis. Of those, 30 taxa were determined to be undescribed and new to science, including members of five new genera (2 sponges and 3 cnidarians). We also systematically analysed image frame grabs from over 85 h of ROV footage to investigate patterns of species diversity and document the presence of a range of underwater communities between depths of 290 and 3,373 m, including cold-water coral communities, extensive glass sponge and octocoral gardens, and soft-sediment faunal communities. This characterization of Galapagos deep-sea benthic invertebrate megafauna across a range of ecosystems represents a first step to study future changes that may result from anthropogenic impacts to the planet’s climate and oceans, and informed the creation of fully protected deep-water areas in the Galapagos Marine Reserve that may help preserve these unique communities in our changing planet.
    Description: We are thankful to the Ocean Exploration Trust as well as the pilots and crew aboard the E/V Nautilus during cruise NA064 for their assistance in sample collection and exploration using the Hercules ROV. Thank you to the NOAA Office of Exploration and Research for funding the E/V Nautilus Exploration Program (NA15OAR0110220). Further acknowledgements and thanks go out to the Charles Darwin Foundation and the Galapagos National Park Directorate for their collaboration and assistance in the exploration of the Galapagos Platform conducted under research permits PC-26–15 & PC-45-15. We also gratefully recognize the Government of Ecuador via the Ecuadorian Navy for permission to operate in their territorial waters. This research was supported by a grant from the Helmsley Charitable Trust and the Gordon and Betty Moore Foundation. This publication is contribution number 2354 of the Charles Darwin Foundation for the Galapagos Islands.
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    Intermediate intraseasonal variability in the western tropical Pacific Ocean: meridional distribution of equatorial Rossby waves influenced by a tilted boundary (2020)
    American Meteorological Society
    Details
    Publication Date: 2022-05-26
    Description: Author Posting. © American Meteorological Society, 2020. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 50(4),(2020): 921-933, doi:10.1175/JPO-D-19-0184.1.
    Description: Intermediate-depth intraseasonal variability (ISV) at a 20–90-day period, as detected in velocity measurements from seven subsurface moorings in the tropical western Pacific, is interpreted in terms of equatorial Rossby waves. The moorings were deployed between 0° and 7.5°N along 142°E from September 2014 to October 2015. The strongest ISV energy at 1200 m occurs at 4.5°N. Peak energy at 4.5°N is also seen in an eddy-resolving global circulation model. An analysis of the model output identifies the source of the ISV as short equatorial Rossby waves with westward phase speed but southeastward and downward group velocity. Additionally, it is shown that a superposition of first three baroclinic modes is required to represent the ISV energy propagation. Further analysis using a 1.5-layer shallow water model suggests that the first meridional mode Rossby wave accounts for the specific meridional distribution of ISV in the western Pacific. The same model suggests that the tilted coastlines of Irian Jaya and Papua New Guinea, which lie to the south of the moorings, shift the location of the northern peak of meridional velocity oscillation from 3°N to near 4.5°N. The tilt of this boundary with respect to a purely zonal alignment therefore needs to be taken into account to explain this meridional shift of the peak. Calculation of the barotropic conversion rate indicates that the intraseasonal kinetic energy below 1000 m can be transferred into the mean flows, suggesting a possible forcing mechanism for intermediate-depth zonal jets.
    Description: This study is supported by the National Natural Science Foundation of China (Grants 91958204 and 41776022), the China Ocean Mineral Resources Research and Development Association Program (DY135-E2-3-02), and the Strategic Priority Research Program of the Chinese Academy of Sciences (Grant XDA22000000). L. Pratt was supported by the U.S. National Science Foundation Grant OCE-1657870. F. Wang thanks the support from the Scientific and Technological Innovation Project by Qingdao National Laboratory for Marine Science and Technology (Grant 2016ASKJ12), the National Program on Global Change and Air-Sea Interaction (Grant GASI-IPOVAI-01-01), and the National Natural Science Foundation of China (Grants 41730534, 41421005, and U1406401).
    Keywords: North Pacific Ocean ; Rossby waves ; Model output statistics ; Numerical analysis/modeling ; Intraseasonal variability
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    Bowhead whales use two foraging strategies in response to fine-scale differences in zooplankton vertical distribution (2020)
    Nature Research
    Details
    Publication Date: 2022-05-26
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Fortune, S. M. E., Ferguson, S. H., Trites, A. W., Hudson, J. M., & Baumgartner, M. F. Bowhead whales use two foraging strategies in response to fine-scale differences in zooplankton vertical distribution. Scientific Reports, 10(1), (2020): 20249, doi:10.1038/s41598-020-76071-9.
    Description: As zooplanktivorous predators, bowhead whales (Balaena mysticetus) must routinely locate patches of prey that are energy-rich enough to meet their metabolic needs. However, little is known about how the quality and quantity of prey might influence their feeding behaviours. We addressed this question using a new approach that included: (1) multi-scale biologging and unmanned aerial system observations of bowhead whales in Cumberland Sound, Nunavut (Canada), and (2) an optical plankton counter (OPC) and net collections to identify and enumerate copepod prey species through the water column. The OPC data revealed two prey layers comprised almost exclusively of lipid-rich calanoid copepods. The deep layer contained fewer, but larger, particles (10% greater overall biomass) than the shallow prey layer. Dive data indicated that the whales conducted long deep Square-shaped dives (80% of dives; averaging depth of 260.4 m) and short shallow Square-shaped dives (16%; averaging depth of 22.5 m) to feed. The whales tended to dive proportionally more to the greater biomass of zooplankton that occurred at depth. Combining behavioural recordings with prey sampling showed a more complex feeding ecology than previously understood, and provides a means to evaluate the energetic balance of individuals under current environmental conditions.
    Description: Funding was awarded to S.H.F and provided by: Fisheries and Oceans Canada (Emerging Fisheries), World Wildlife Fund Canada (Arctic Species Conservation Fund), Nunavut Wildlife Research Trust Fund, Nunavut General Monitoring Program, Ocean Tracking Network and ArcticNet Centre of Excellence. Personal support was awarded to S.M.E.F and provided by Natural Sciences and Engineering Research Council Canadian Graduate Scholarship, Northern Scientific Training Program (Canadian Polar Commission), The Molson Foundation and the W.Garfield Weston Foundation.
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    Drivers and impacts of the most extreme marine heatwaves events (2020)
    Nature Research
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    Publication Date: 2022-05-26
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Sen Gupta, A., Thomsen, M., Benthuysen, J. A., Hobday, A. J., Oliver, E., Alexander, L. V., Burrows, M. T., Donat, M. G., Feng, M., Holbrook, N. J., Perkins-Kirkpatrick, S., Moore, P. J., Rodrigues, R. R., Scannell, H. A., Taschetto, A. S., Ummenhofer, C. C., Wernberg, T., & Smale, D. A. Drivers and impacts of the most extreme marine heatwaves events. Scientific Reports, 10(1), (2020): 19359. doi:10.1038/s41598-020-75445-3.
    Description: Prolonged high-temperature extreme events in the ocean, marine heatwaves, can have severe and long-lasting impacts on marine ecosystems, fisheries and associated services. This study applies a marine heatwave framework to analyse a global sea surface temperature product and identify the most extreme events, based on their intensity, duration and spatial extent. Many of these events have yet to be described in terms of their physical attributes, generation mechanisms, or ecological impacts. Our synthesis identifies commonalities between marine heatwave characteristics and seasonality, links to the El Niño-Southern Oscillation, triggering processes and impacts on ocean productivity. The most intense events preferentially occur in summer, when climatological oceanic mixed layers are shallow and winds are weak, but at a time preceding climatological maximum sea surface temperatures. Most subtropical extreme marine heatwaves were triggered by persistent atmospheric high-pressure systems and anomalously weak wind speeds, associated with increased insolation, and reduced ocean heat losses. Furthermore, the most extreme events tended to coincide with reduced chlorophyll-a concentration at low and mid-latitudes. Understanding the importance of the oceanic background state, local and remote drivers and the ocean productivity response from past events are critical steps toward improving predictions of future marine heatwaves and their impacts.
    Description: Concepts and analyses were developed during three workshops organized by an international working group on marine heatwaves (https://www.marineheatwaves.org) funded by a University of Western Australia Research Collaboration Award and a Natural Environment Research Council (UK) International Opportunity Fund (NE/N00678X/1). D.A.S. is supported by a UKRI Future Leaders Fellowship (MR/S032827/1). The Australian Research Council supported T.W. (FT110100174 and DP170100023) and A.S.T. (FT160100495). N.J.H. and L.V.A. are supported by the ARC Centre of Excellence for Climate Extremes (CE170100023). M.S.T was supported by the Brian Mason Trust. P.J.M. is supported by a Marie Curie Career Integration Grant (PCIG10-GA-2011–303685) and a Natural Environment Research Council (UK) Grant (NE/J024082/1). E.C.J.O. was supported by National Sciences and Engineering Research Council of Canada (NSERC) Discovery Grant RGPIN-2018-05255 and Marine Environmental Observation, Prediction and Response Network (MEOPAR) project 1-02-02-059.1. C.C.U. acknowledges financial support through the Early Career Scientist Endowed Fund, George E. Thibault Early Career Scientist Fund, and The Joint Initiative Awards Fund from the Andrew W. Mellon Foundation at WHOI. M.G.D. received funding by the Spanish Ministry for the Economy, Industry and Competitiveness Ramón y Cajal 2017 grant reference RYC-2017-22964. NOAA High Resolution SST data provided by the NOAA/OAR/ESRL PSD, Boulder, Colorado, USA, from their Web site at https://www.esrl.noaa.gov/psd/.
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    Contrasting global, regional and local patterns of genetic structure in gray reef shark populations from the Indo-Pacific region (2020)
    Nature Research
    Details
    Publication Date: 2022-05-26
    Description: © The Author(s), 2019. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Boissin, E., Thorrold, S. R., Braun, C. D., Zhou, Y., Clua, E. E., & Planes, S. Contrasting global, regional and local patterns of genetic structure in gray reef shark populations from the Indo-Pacific region. Scientific Reports, 9(1), (2019): 15816. doi: 10.1038/s41598-019-52221-6.
    Description: Human activities have resulted in the loss of over 90% of sharks in most ocean basins and one in four species of elasmobranch are now listed at risk of extinction by the IUCN. How this collapse will affect the ability of populations to recover in the face of continued exploitation and global climate change remains unknown. Indeed, important ecological and biological information are lacking for most shark species, particularly estimates of genetic diversity and population structure over a range of spatial scales. Using 15 microsatellite markers, we investigated genetic diversity and population structure in gray reef sharks over their Indo-Pacific range (407 specimens from 9 localities). Clear genetic differentiation was observed between the Indian and the Pacific Ocean specimens (FST = 0.145***). Further differentiation within the Pacific included a West and East cleavage as well as North-Central and South-Central Pacific clusters. No genetic differentiation was detected within archipelagos. These results highlight the legacy of past climate changes and the effects of large ocean expanses and circulation patterns on contrasting levels of connectivity at global, regional and local scales. Our results indicate a need for regional conservation units for gray reef sharks and pinpoint the isolation and vulnerability of their French Polynesian population.
    Description: All of the following provided funding for the research presented here (no particular order after the first organization): Laboratoire d’Excellence CORAIL, Ministère de l’Ecologie du Développement Durable et de l’Energie, Ministère de l’Outre-Mer, Fonds Pacifique, IFRECOR, Délégation à la recherche de Polynésie, Agence Nationale de la Recherche and the Robertson Foundation. We also thank Andrew Chin, Jennifer Ovenden, Mark Meekan and Conrad Speed, Mael Imirizaldu, David Lecchini, Patrick Plantard, Jonathan Werry, Johann Mourier, Thomas Vignaud, Matis Jorge, Noémie Jublier and several other students for providing samples or for assistance with sampling. We are grateful to three anonymous reviewers who provided helpful comments.
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    Dynamics and thermodynamics of the mean transpolar drift and ice thickness in the Arctic Ocean (2020)
    American Meteorological Society
    Details
    Publication Date: 2022-05-26
    Description: Author Posting. © American Meteorological Society, 2019. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Climate 32(24), (2019): 8449-8463, doi: 10.1175/JCLI-D-19-0252.1.
    Description: A theory for the mean ice thickness and the Transpolar Drift in the Arctic Ocean is developed. Asymptotic expansions of the ice momentum and thickness equations are used to derive analytic expressions for the leading-order ice thickness and velocity fields subject to wind stress forcing and heat loss to the atmosphere. The theory is most appropriate for the eastern and central Arctic, but not for the region of the Beaufort Gyre subject to anticyclonic wind stress curl. The scale analysis reveals two distinct regimes: a thin ice regime in the eastern Arctic and a thick ice regime in the western Arctic. In the eastern Arctic, the ice drift is controlled by a balance between wind and ocean drag, while the ice thickness is controlled by heat loss to the atmosphere. In contrast, in the western Arctic, the ice thickness is determined by a balance between wind and internal ice stress, while the drift is indirectly controlled by heat loss to the atmosphere. The southward flow toward Fram Strait is forced by the across-wind gradient in ice thickness. The basic predictions for ice thickness, heat loss, ice volume, and ice export from the theory compare well with an idealized, coupled ocean–ice numerical model over a wide range of parameter space. The theory indicates that increasing atmospheric temperatures or wind speed result in a decrease in maximum ice thickness and ice volume. Increasing temperatures also result in a decrease in heat loss to the atmosphere and ice export through Fram Strait, while increasing winds drive increased heat loss and ice export.
    Description: MAS was supported by the National Science Foundation under Grant OPP-1822334. Comments and suggestions from Michael Steele, Gianluca Meneghello, and an anonymous reviewer helped to clarify the work.
    Description: 2020-05-15
    Keywords: Arctic ; Sea ice ; Ocean circulation
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    Tidal wetland resilience to sea level rise increases their carbon sequestration capacity in United States (2020)
    Nature Research
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    Publication Date: 2022-05-26
    Description: © The Author(s), 2019. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Wang, F., Lu, X., Sanders, C. J., & Tang, J. Tidal wetland resilience to sea level rise increases their carbon sequestration capacity in United States. Nature Communications, 10(1), (2019): 5434, doi: 10.1038/s41467-019-13294-z.
    Description: Coastal wetlands are large reservoirs of soil carbon (C). However, the annual C accumulation rates contributing to the C storage in these systems have yet to be spatially estimated on a large scale. We synthesized C accumulation rate (CAR) in tidal wetlands of the conterminous United States (US), upscaled the CAR to national scale, and predicted trends based on climate change scenarios. Here, we show that the mean CAR is 161.8 ± 6 g Cm−2 yr−1, and the conterminous US tidal wetlands sequestrate 4.2–5.0 Tg C yr−1. Relative sea level rise (RSLR) largely regulates the CAR. The tidal wetland CAR is projected to increase in this century and continue their C sequestration capacity in all climate change scenarios, suggesting a strong resilience to sea level rise. These results serve as a baseline assessment of C accumulation in tidal wetlands of US, and indicate a significant C sink throughout this century.
    Description: This study was partially funded by Natural Science Foundation of China (31300419, 31670621, 31870463), the Key Special Project for Introduced Talents Team of Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) (GML2019ZD0408), R&D Program of Guangdong Provincial Department of Science and Technology (2018B030324003) and Pearl River Nova Program of Guangzhou (201710010140) awarded to F.W. J.T. is supported by the NOAA National Estuarine Research Reserve Science Collaborative (NA09NOS4190153 and NA14NOS4190145). C.J.S. is supported by Australian Research Council (DE160100443).
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    Intergyre salt transport in the climate warming response (2020)
    American Meteorological Society
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    Publication Date: 2022-05-26
    Description: Author Posting. © American Meteorological Society, 2020. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 50(1), (2020): 255-268, doi:10.1175/JPO-D-19-0166.1.
    Description: Regional connectivity is important to the global climate salinity response, particularly because salinity anomalies do not have a damping feedback with atmospheric freshwater fluxes and may therefore be advected over long distances by ocean circulation, resulting in nonlocal influences. Climate model intercomparison experiments such as CMIP5 exhibit large uncertainty in some aspects of the salinity response, hypothesized here to be a result of ocean dynamics. We use two types of Lagrangian particle tracking experiments to investigate pathways of exchange for salinity anomalies. The first uses forward trajectories to estimate average transport time scales between water cycle regimes. The second uses reverse trajectories and a freshwater accumulation method to quantitatively identify remote influences in the salinity response. Additionally, we compare velocity fields with both resolved and parameterized eddies to understand the impact of eddy stirring on intergyre exchange. These experiments show that surface anomalies are readily exchanged within the ocean gyres by the mean circulation, but intergyre exchange is slower and largely eddy driven. These dynamics are used to analyze the North Atlantic salinity response to climate warming and water cycle intensification, where the system is broadly forced with fresh surface anomalies in the subpolar gyre and salty surface anomalies in the subtropical gyres. Under these competing forcings, strong intergyre eddy fluxes carry anomalously salty subtropical water into the subpolar gyre which balances out much of the local freshwater input.
    Description: We acknowledge the World Climate Research Programme’s Working Group on Coupled Modelling, which is responsible for CMIP, and we thank the climate modeling groups (listed in Table 1 of this paper) for producing and making available their model output. We also thank the creators of the SODA and ECCO reanalysis products. This work was supported by NASA Headquarters under the NASA Earth and Space Science Fellowship Program Award 80NSSC17K0372, and by National Science Foundation Award OCE-1433132. The SODA outputs used here can be accessed at http://www.atmos.umd.edu/~ocean/, and the ECCO outputs at https://ecco.jpl.nasa.gov/. Data from the CMIP5 ensemble is available at https://esgf-node.llnl.gov/projects/esgf-llnl/. The particle tracking code used for these experiments can be found at https://github.com/slevang/particle-tracking.
    Description: 2020-07-20
    Keywords: North Atlantic Ocean ; Eddies ; Hydrologic cycle ; Lagrangian circulation/transport ; Transport ; Climate change
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    The various routes to functional regeneration in the central nervous system (2020)
    Nature Research
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    Publication Date: 2022-05-26
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Echeverri, K. The various routes to functional regeneration in the central nervous system. Communications Biology, 3(1), (2020): 47, doi:10.1038/s42003-020-0773-z.
    Description: The axolotl is a type of Mexican salamander with astonishing regenerative capacity1. In our recent paper, we identified a signaling heterodimer that is formed directly after injury in the glial cells adjacent to the injury in axolotls. The c-Fos and JunB genes forming this heterodimer are not unique to animals with high regenerative capacity but they are present in humans too. In this paper I propose perspectives on molecular control of regeneration and future directions that need to be taken to advance our understanding of regeneration at a molecular level.
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    Temporal patterns in acoustic presence and foraging activity of oceanic dolphins at seamounts in the Azores (2020)
    Nature Research
    Details
    Publication Date: 2022-05-26
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Cascao, I., Lammers, M. O., Prieto, R., Santos, R. S., & Silva, M. A. Temporal patterns in acoustic presence and foraging activity of oceanic dolphins at seamounts in the Azores. Scientific Reports, 10(1), (2020): 3610, doi:10.1038/s41598-020-60441-4.
    Description: Several seamounts have been identified as hotspots of marine life in the Azores, acting as feeding stations for top predators, including cetaceans. Passive acoustic monitoring is an efficient tool to study temporal variations in the occurrence and behaviour of vocalizing cetacean species. We deployed bottom-moored Ecological Acoustic Recorders (EARs) to investigate the temporal patterns in acoustic presence and foraging activity of oceanic dolphins at two seamounts (Condor and Gigante) in the Azores. Data were collected in March–May 2008 and April 2010–February 2011. Dolphins were present year round and nearly every day at both seamounts. Foraging signals (buzzes and bray calls) were recorded in 〉87% of the days dolphin were present. There was a strong diel pattern in dolphin acoustic occurrence and behaviour, with higher detections of foraging and echolocation vocalizations during the night and of social signals during daylight hours. Acoustic data demonstrate that small dolphins consistently use Condor and Gigante seamounts to forage at night. These results suggest that these seamounts likely are important feeding areas for dolphins. This study contributes to a better understanding of the feeding ecology of oceanic dolphins and provides new insights into the role of seamount habitats for top predators.
    Description: This research was supported by the Fundação para a Ciência e a Tecnologia (FCT), Azores 2020 Operational Programme and the Fundo Regional da Ciência e Tecnologia (FRCT), through research projects TRACE (PTDC/MAR/74071/2006), MAPCET (M2.1.2/F/012/2011), FCT-Exploratory (IF/00943/2013/CP1199/CT0001), WATCH IT (Acores-01-0145-FEDER-000057) and MISTIC SEAS II (GA11.0661/2017/750679/SUB/ENV.C2), co-funded by FEDER, COMPETE, QREN, POPH, European Social Fund (ESF), the Portuguese Ministry for Science and Education, and EU-DG/ENV. The Azores 2020 Operational Programme is funded by the community structural funds ERDF and ESF. Funds were also provided by FCT to MARE, through the strategic project UID/MAR/04292/2013. MAS was supported through a FCT Investigator contract funded by POPH, QREN, ESF and the Portuguese Ministry for Science and Education (IF/00943/2013). IC was supported by a FCT doctoral grant (SFRH/BD/41192/2007) and RP by a FCT postdoctoral grant (SFRH/BPD/108007/2015). We thank the field and crew teams for assisting with the many deployments and recoveries of the EARs. Special thanks to Norberto Serpa for helping with mooring design, Ken Sexton and Michael Richlen for their roles in manufacturing the EARs, Sergio Gomes for building the battery packs, and Lisa Munger for adapting Triton for EAR data analysis.
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    Wind-forced variability of the remote meridional overturning circulation (2020)
    American Meteorological Society
    Details
    Publication Date: 2022-05-26
    Description: Author Posting. © American Meteorological Society, 2020. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 50(2), (2020): 455-469, doi:10.1175/JPO-D-19-0190.1.
    Description: The mechanisms by which time-dependent wind stress anomalies at midlatitudes can force variability in the meridional overturning circulation at low latitudes are explored. It is shown that winds are effective at forcing remote variability in the overturning circulation when forcing periods are near the midlatitude baroclinic Rossby wave basin-crossing time. Remote overturning is required by an imbalance in the midlatitude mass storage and release resulting from the dependence of the Rossby wave phase speed on latitude. A heuristic theory is developed that predicts the strength and frequency dependence of the remote overturning well when compared to a two-layer numerical model. The theory indicates that the variable overturning strength, relative to the anomalous Ekman transport, depends primarily on the ratio of the meridional spatial scale of the anomalous wind stress curl to its latitude. For strongly forced systems, a mean deep western boundary current can also significantly enhance the overturning variability at all latitudes. For sufficiently large thermocline displacements, the deep western boundary current alternates between interior and near-boundary pathways in response to fluctuations in the wind, leading to large anomalies in the volume of North Atlantic Deep Water stored at midlatitudes and in the downstream deep western boundary current transport.
    Description: MAS and DN were supported by the National Science Foundation under Grant OCE-1634468.
    Description: 2020-11-10
    Keywords: Meridional overturning circulation ; Ocean circulation ; Rossby waves ; Thermocline circulation
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    Another note on Rossby wave energy flux (2020)
    American Meteorological Society
    Details
    Publication Date: 2022-05-26
    Description: Author Posting. © American Meteorological Society, 2020. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 50(2),(2020): 531-534, doi:10.1175/JPO-D-19-0237.1.
    Description: Longuet-Higgins in 1964 first pointed out that the Rossby wave energy flux as defined by the pressure work is not the same as that defined by the group velocity. The two definitions provide answers that differ by a nondivergent vector. Longuet-Higgins suggested that the problem arose from ambiguity in the definition of energy flux, which only impacts the energy equation through its divergence. Numerous authors have addressed this issue from various perspectives, and we offer one more approach that we feel is more succinct than previous ones, both mathematically and conceptually. We follow the work described by Cai and Huang in 2013 in concluding that there is no need to invoke the ambiguity offered by Longuet-Higgins. By working directly from the shallow-water equations (as opposed to the more involved quasigeostrophic treatment of Cai and Huang), we provide a concise derivation of the nondivergent pressure work and demonstrate that the two energy flux definitions are equivalent when only the divergent part of the pressure work is considered. The difference vector comes from the nondivergent part of the geostrophic pressure work, and the familiar westward component of the Rossby wave group velocity comes from the divergent part of the geostrophic pressure work. In a broadband wave field, the expression for energy flux in terms of a single group velocity is no longer meaningful, but the expression for energy flux in terms of the divergent pressure work is still valid.
    Description: This work was supported by NASA Grants NNX13AE46G and NNX14AM71G, and National Science Foundation Grant OCE-1336752. We are indebted to Roger Samelson, Joe Pedlosky, and two anonymous reviewers for comments that significantly improved the presentation.
    Description: 2020-08-19
    Keywords: Rossby waves
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    Estuarine exchange flow variability in a seasonal, segmented estuary (2020)
    American Meteorological Society
    Details
    Publication Date: 2022-05-26
    Description: Author Posting. © American Meteorological Society, 2020. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 50(3),(2020): 595-613, doi:10.1175/JPO-D-19-0108.1.
    Description: Small estuaries in Mediterranean climates display pronounced salinity variability at seasonal and event time scales. Here, we use a hydrodynamic model of the Coos Estuary, Oregon, to examine the seasonal variability of the salinity dynamics and estuarine exchange flow. The exchange flow is primarily driven by tidal processes, varying with the spring–neap cycle rather than discharge or the salinity gradient. The salinity distribution is rarely in equilibrium with discharge conditions because during the wet season the response time scale is longer than discharge events, while during low flow it is longer than the entire dry season. Consequently, the salt field is rarely fully adjusted to the forcing and common power-law relations between the salinity intrusion and discharge do not apply. Further complicating the salinity dynamics is the estuarine geometry that consists of multiple branching channel segments with distinct freshwater sources. These channel segments act as subestuaries that import both higher- and lower-salinity water and export intermediate salinities. Throughout the estuary, tidal dispersion scales with tidal velocity squared, and likely includes jet–sink flow at the mouth, lateral shear dispersion, and tidal trapping in branching channel segments inside the estuary. While the estuarine inflow is strongly correlated with tidal amplitude, the outflow, stratification, and total mixing in the estuary are dependent on the seasonal variation in river discharge, which is similar to estuaries that are dominated by subtidal exchange flow.
    Description: We thank two anonymous reviewers for constructive comments, the staff of the South Slough National Estuarine Research Reserve for providing time series data, and Parker MacCready for sharing LiveOcean boundary conditions. This work was partially sponsored by the National Estuarine Research Reserve System Science Collaborative, which supports collaborative research that addresses coastal management problems important to the reserves. The Science Collaborative is funded by the National Oceanic and Atmospheric Administration and managed by the University of Michigan Water Center (NAI4NOS4190145). Computations were performed on the University of Oregon high performance computer Talapas.
    Description: 2020-08-26
    Keywords: Estuaries ; North Pacific Ocean ; Baroclinic flows ; Channel flows ; Dispersion ; Mixing
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    Reply to "comments on 'corrections for pumped SBE 41CP CTDs determined from stratified tank experiments'" (2020)
    American Meteorological Society
    Details
    Publication Date: 2022-05-26
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Martini, K. I., Murphy, D. J., Schmitt, R. W., & Larson, N. G. Reply to "comments on 'corrections for pumped SBE 41CP CTDs determined from stratified tank experiments'". Journal of Atmospheric and Oceanic Technology, 37(2), (2020): 357-363, doi:10.1175/JTECH-D-19-0171.1.
    Description: The response in Johnson (2020) that the method used to determine cell thermal mass correction coefficients for SBE 41CP CTD data from Argo floats is biased as determined by Martini et al. (2019) is valid. However, the recommendation for correction coefficients should not be followed due to these three errors in Johnson (2020): Alignment is as large a source of dynamic error as cell thermal mass in the SBE 41CP CTD. Order of operations was overlooked, so that cell thermal mass is used to correct for alignment errors caused by the temporal mismatch of temperature and conductivity. The cell thermal mass corrections determined in Johnson et al. (2007) and Johnson (2020) also bias salinity. In this response we will do the following: Detail how the corrections in Johnson (2020) are biased because the optimization procedure does not accurately model physics in the tank and conductivity cell. Verify using in situ data from Argo floats deployed in the ocean that alignment is a significant source of error for the SBE 41CP as shown in Martini et al. (2019). Determine cell thermal mass correction coefficients from the stratified tank experiment merging the methods of Johnson (2020) and Martini et al. (2019) to optimize against a model that better represents the physics in the tank and conductivity cell. Compare the corrections using in situ data using the coefficients determined in Johnson et al. (2007), Martini et al. (2019), Johnson (2020), and this manuscript.
    Description: Thanks to Pelle Robbins for finding the in situ profiles used for this analysis in the vast database of Argo floats, John Gilson showing me how to access that high-resolution data, Ray Schmitt for use of the stratified tank, Susan Wijffels, Breck Owens, and Annie Wong for intellectual support, and Diego Sorrentino and Vlad Simontov for validating the sampling scheme in the SBE 41CP.
    Description: 2020-08-24
    Keywords: Ocean ; Algorithms ; Data processing ; In situ oceanic observations ; Measurements ; Profilers, oceanic
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    Long-term imaging of the photosensitive, reef-building coral Acropora muricata using light-sheet illumination (2020)
    Nature Research
    Details
    Publication Date: 2022-05-26
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Laissue, P. P., Roberson, L., Gu, Y., Qian, C., & Smith, D. J. Long-term imaging of the photosensitive, reef-building coral Acropora muricata using light-sheet illumination. Scientific Reports, 10(1), (2020):10369, doi:10.1038/s41598-020-67144-w.
    Description: Coral reefs are in alarming decline due to climate emergency, pollution and other man-made disturbances. The numerous ecosystem services derived from coral reefs are underpinned by the growth and physical complexity of reef-forming corals. Our knowledge of their fundamental biology is limited by available technology. We need a better understanding of larval settlement and development, skeletogenesis, interactions with pathogens and symbionts, and how this biology interacts with environmental factors such as light exposure, temperature, and ocean acidification. We here focus on a fast-growing key coloniser, Acropora muricata (Linnaeus, 1758). To enable dynamic imaging of this photosensitive organism at different scales, we developed light-sheet illumination for fluorescence microscopy of small coral colonies. Our approach reveals live polyps in previously unseen detail. An imaging range for Acropora muricata with no measurable photodamage is defined based upon polyp expansion, coral tissue reaction, and photobleaching. We quantify polyp retraction as a photosensitive behavioural response and show coral tissue rupture at higher irradiance with blue light. The simple and flexible technique enables non-invasive continuous dynamic imaging of highly photosensitive organisms with sizes between 1 mm3 and 5 cm3, for eight hours, at high temporal resolution, on a scale from multiple polyps down to cellular resolution. This live imaging tool opens a new window into the dynamics of reef-building corals.
    Description: This work was made possible through a Royal Society Research Grant [RG120274], an innovation voucher from the University of Essex [DBF6000], a Royal Society Industry Fellowship [IF150018] and two Whitman Center Fellowships from the Marine Biological Laboratory (Woods Hole, USA) to PPL. PPL would like to thank Russell Smart for aquarium maintenance and Tony Jordan for production of customised parts. PPL also thanks the open-source communities OpenSPIM and µManager for support, as well as Cairn Research, 89North, Nikon Instruments UK, Alex Gardiol from Olympus Keymed UK, and Scott Young, Matt Preston and Daniel Croucher from Teledyne Photometrics for equipment loans. PPL is grateful to Amy Gladfelter, Hari Shroff, Abhishek Kumar, Louis Kerr, Philip M. Mullineaux, Marino Exposito-Rodriguez and Jean A. Laissue for support and critical discussions.
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    Redrawing the Iceland−Scotland overflow water pathways in the North Atlantic (2020)
    Nature Research
    Details
    Publication Date: 2022-05-26
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Zou, S., Bower, A., Furey, H., Susan Lozier, M., & Xu, X. Redrawing the Iceland−Scotland overflow water pathways in the North Atlantic. Nature Communications, 11(1), (2020): 890, doi:10.1038/s41467-020-15513-4.
    Description: Iceland-Scotland Overflow Water (ISOW) is a primary deep water mass exported from the Norwegian Sea into the North Atlantic as part of the global Meridional Overturning Circulation. ISOW has historically been depicted as flowing counter-clockwise in a deep boundary current around the subpolar North Atlantic, but this single-boundary-following pathway is being challenged by new Lagrangian observations and model simulations. We show here that ISOW leaves the boundary and spreads into the interior towards the central Labrador and Irminger basins after flowing through the Charlie-Gibbs Fracture Zone. We also describe a newly observed southward pathway of ISOW along the western flank of the Mid-Atlantic Ridge. The partitioning of these pathways is shown to be influenced by deep-reaching eddies and meanders of the North Atlantic Current. Our results, in tandem with previous studies, call for a revision in the historical depiction of ISOW pathways throughout the North Atlantic.
    Description: S.Z., A.B. and H.F. gratefully acknowledge the support from the Physical Oceanography Program of the U.S. National Science Foundation (grant number OCE-17-56361). S.Z. and M.S.L. also acknowledge support from NSF-OCE-17-56143. X.X. acknowledges support from NSF award 1537136. Gratitude is also extended to C. Böning and A. Biastoch for sharing FLAME output and trajectory calculation code.
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    Likely weakening of the Florida Current during the past century revealed by sea-level observations (2020)
    Nature Research
    Details
    Publication Date: 2022-05-26
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Piecuch, C. G. Likely weakening of the Florida Current during the past century revealed by sea-level observations. Nature Communications, 11(1), (2020): 3973, doi:10.1038/s41467-020-17761-w.
    Description: The Florida Current marks the beginning of the Gulf Stream at Florida Straits, and plays an important role in climate. Nearly continuous measurements of Florida Current transport are available at 27°N since 1982. These data are too short for assessing possible multidecadal or centennial trends. Here I reconstruct Florida Current transport during 1909–2018 using probabilistic methods and principles of ocean physics applied to the available transport data and longer coastal sea-level records. Florida Current transport likely declined steadily during the past century. Transport since 1982 has likely been weaker on average than during 1909–1981. The weakest decadal-mean transport in the last 110 y likely took place in the past two decades. Results corroborate hypotheses that the deep branch of the overturning circulation declined over the recent past, and support relationships observed in climate models between the overturning and surface western boundary current transports at multidecadal and longer timescales.
    Description: Funding came from NSF awards OCE-1558966 and OCE-1834739. I acknowledge helpful conversations with M. Andres, L. Beal, S. Coats, S. Dangendorf, S. Elipot, T. Frederikse, N. Foukal, G. Gawarkiewicz, G. Gebbie, B. Hamlington, J. Heiderich, A. Kemp, Y.-O. Kwon, F. Landerer, C. Little, M. Thomas, T. Wahl, and S. Wijffels.
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    Recycled arc mantle recovered from the Mid-Atlantic Ridge (2020)
    Nature Research
    Details
    Publication Date: 2022-05-26
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Urann, B. M., Dick, H. J. B., Parnell-Turner, R., & Casey, J. F. Recycled arc mantle recovered from the Mid-Atlantic Ridge. Nature Communications, 11(1), (2020): 3887, doi:10.1038/s41467-020-17604-8.
    Description: Plate tectonics and mantle dynamics necessitate mantle recycling throughout Earth’s history, yet direct geochemical evidence for mantle reprocessing remains elusive. Here we present evidence of recycled supra-subduction zone mantle wedge peridotite dredged from the Mid-Atlantic Ridge near 16°30′N. Peridotite trace-element characteristics are inconsistent with fractional anhydrous melting typically associated with a mid-ocean ridge setting. Instead, the samples are best explained by hydrous flux melting which changed the melting reactions such that clinopyroxene was not exhausted at high degrees of melting and was retained in the residuum. Based on along-axis ridge depth variations, this buoyant refractory arc mantle is likely compensated at depth by denser, likely garnet-rich, lithologies within the mantle column. Our results suggest that highly refractory arc mantle relicts are entrained in the upper mantle and may constitute 〉60% of the upper mantle by volume. These highly refractory mantle domains, which contribute little to mantle melting, are under-represented in compilations of mantle composition that rely on inverted basalt compositions alone.
    Description: We thank the science party for their dutiful collection and description of dredge samples, and in particular chief scientist Dr. Deborah K. Smith. Analysis work for this research was supported by an internal grant from the MIT EAPS Student Research Fund to BMU. Urann was supported by the Stanley W. Watson Student Fellowship Fund based at WHOI. Dick and Urann were supported by NSF OCE-1637130 and OCE-1155650. Dr. Yongjun Gao is thanked for conducting LA-ICP-MS trace elements analyses.
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    An observational estimate of the direct response of the cold-season atmospheric circulation to the Arctic Sea ice loss (2020)
    American Meteorological Society
    Details
    Publication Date: 2022-05-26
    Description: Author Posting. © American Meteorological Society, 2020. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Climate 33(9), (2020): 3863-3882, doi:10.1175/JCLI-D-19-0687.1.
    Description: The direct response of the cold-season atmospheric circulation to the Arctic sea ice loss is estimated from observed sea ice concentration (SIC) and an atmospheric reanalysis, assuming that the atmospheric response to the long-term sea ice loss is the same as that to interannual pan-Arctic SIC fluctuations with identical spatial patterns. No large-scale relationship with previous interannual SIC fluctuations is found in October and November, but a negative North Atlantic Oscillation (NAO)/Arctic Oscillation follows the pan-Arctic SIC fluctuations from December to March. The signal is field significant in the stratosphere in December, and in the troposphere and tropopause thereafter. However, multiple regressions indicate that the stratospheric December signal is largely due to concomitant Siberian snow-cover anomalies. On the other hand, the tropospheric January–March NAO signals can be unambiguously attributed to SIC variability, with an Iceland high approaching 45 m at 500 hPa, a 2°C surface air warming in northeastern Canada, and a modulation of blocking activity in the North Atlantic sector. In March, a 1°C northern Europe cooling is also attributed to SIC. An SIC impact on the warm Arctic–cold Eurasia pattern is only found in February in relation to January SIC. Extrapolating the most robust results suggests that, in the absence of other forcings, the SIC loss between 1979 and 2016 would have induced a 2°–3°C decade−1 winter warming in northeastern North America and a 40–60 m decade−1 increase in the height of the Iceland high, if linearity and perpetual winter conditions could be assumed.
    Description: This research was supported by the Blue-Action project (European Union’s Horizon 2020 research and innovation program, Grant 727852) and by the National Science Foundation (OPP 1736738).
    Description: 2020-10-06
    Keywords: Atmosphere-ocean interaction ; Climate change ; Climate variability ; Ice loss/growth
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    Increased typhoon activity in the Pacific deep tropics driven by Little Ice Age circulation changes (2020)
    Nature Research
    Details
    Publication Date: 2022-10-26
    Description: Author Posting. © The Author(s), 2020. This is the author's version of the work. It is posted here by permission of Nature Research for personal use, not for redistribution. The definitive version was published in Bramante, J. F., Ford, M. R., Kench, P. S., Ashton, A. D., Toomey, M. R., Sullivan, R. M., Karnauskas, K. B., Ummenhofer, C. C., & Donnelly, J. P. (2020). Increased typhoon activity in the Pacific deep tropics driven by Little Ice Age circulation changes. Nature Geoscience, 13, 806–811. doi:10.1038/s41561-020-00656-2.
    Description: The instrumental record reveals that tropical cyclone activity is sensitive to oceanic and atmospheric variability on inter-annual and decadal scales. However, our understanding of the influence of climate on tropical cyclone behaviour is restricted by the short historical record and the sparseness of prehistorical reconstructions, particularly in the western North Pacific, where coastal communities suffer loss of life and livelihood from typhoons annually. Here, to explore past regional typhoon dynamics, we reconstruct three millennia of deep tropical North Pacific cyclogenesis. Combined with existing records, our reconstruction demonstrates that low-baseline typhoon activity prior to 1350 ce was followed by an interval of frequent storms during the Little Ice Age. This pattern, concurrent with hydroclimate proxy variability, suggests a centennial-scale link between Pacific hydroclimate and tropical cyclone climatology. An ensemble of global climate models demonstrates a migration of the Pacific Walker circulation and variability in two Pacific climate modes during the Little Ice Age, which probably contributed to enhanced tropical cyclone activity in the tropical western North Pacific. In the next century, projected changes to the Pacific Walker circulation and expansion of the tropics will invert these Little Ice Age hydroclimate trends, potentially reducing typhoon activity in the deep tropical Pacific.
    Description: This work was supported by the Strategic Environmental Research and Development Program (SERDP RC-2336). C.C.U. acknowledges support from NSF under AGS-1602455. We thank student intern D. Carter for extensive labwork on core LTD3. We acknowledge the WCRP’s Working Group on Coupled Modelling, which is responsible for CMIP, and we thank the climate modelling groups for producing and making available their model output. CMIP5 model output was provided by the WHOI CMIP5 Community Storage Server via their website: http://cmip5.whoi.edu/. Any use of trade, firm or product names is for descriptive purposes only and does not imply endorsement by the US Government.
    Description: 2021-05-16
    Keywords: Tropical cyclones ; Little Ice Age ; Last millennium ; Paleoclimate
    Repository Name: Woods Hole Open Access Server
    Type: Preprint
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