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  • 1
    Publication Date: 2024-06-02
    Description: Underway optical chlorophyll-a and turbidity data were collected along the cruise track with Sea-Bird Scientific ECO FLNTU sensors installed within two autonomous measurement systems, called self-cleaning monitoring boxes (SMBs). The SMBs measure alternatingly. While one box is measuring, the other one is being cleaned. At the beginning of the transect, the boxes switched to operation every three hours, later, while the ship is transecting the Pacific Gyre, the cleaning interval was changed to only every 24 hours. The water inlet for the SMBs is at about 4 m depth. The data were quality controlled and the chlorophyll-a data were additionally calibrated using discrete water samples. In situ chlorophyll-a samples were collected by the scientific party from Niskin bottles during CTD stations and underway using a tow fish. Chlorophyll-a of these samples was determined in the lab on board using a bench top fluorometer. Details on all quality control steps, the calibration, as well as a comparison to satellite data can be found in the data processing report. The resulting data set contains the original data and corresponding quality flags and, in case of chlorophyll-a, additionally the calibrated data plus quality flag. The data source is given through the name of the active SMB. The data set contains data during transect and station. We recommend to use ship's speed to filter for only transect data.
    Keywords: Chlorophyll a; chlorophyll-a; DAM; DAM_Underway; DAM Underway Research Data; Data quality control procedures according to Copernicus Marine in situ TAC BGC quality control group (2021); DATE/TIME; DEPTH, water; EPA 445; Fluorescence; Fluorometer, Sea-Bird Scientific, ECO FLNTU; Fluorometer, Sea-Bird Scientific, ECO FLNTU; Calibration with samples measured according to Arar and Collins (1997); GEOTRACES GP21; ICBM; LATITUDE; LONGITUDE; Measurement container; Quality flag, chlorophyll a; Quality flag, turbidity; Ship speed; SO289; SO289_0_Underway-7; Sonne_2; turbidity; Turbidity (Nephelometric turbidity unit); Underway Measurement
    Type: Dataset
    Format: text/tab-separated-values, 470752 data points
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  • 2
    Publication Date: 2024-06-02
    Description: Manganese (Mn) is an essential micro-nutrient that can limit or, along with iron (Fe), co-limit phytoplankton growth in the ocean. Glacier meltwater is thought to be a key source of trace metals to high latitude coastal systems, but little is known about the nature of Mn delivered to glacially-influenced fjords and adjacent coastal waters. In this work, we combine in-situ dissolved Mn (dMn) measurements of surface waters with Mn K-edge X-ray absorption spectroscopy (XAS) data of suspended particles in four fjords of West Greenland. Data were collected from transects of up to 100 km in fjords with different underlying bedrock geology from 64 to 70°N. We found that dMn concentrations generally decreased conservatively with increasing salinity (from 80-120 nM at salinity 〈8 to 〈40 nM at salinities 〉25). Dissolved Fe (dFe) trends in these fjords similarly declined with increasing distance from glacier outflows (declining from 〉20 nM to 〈8 nM). However, the dMn/dFe ratio increased rapidly likely due to the greater stability of dMn at intermediate salinities (i.e. 10 – 20) compared to rapid precipitation of dFe across the salinity gradient. The XAS data indicated a widespread presence of Mn(II)-rich suspended particles near fjord surfaces, with structures akin to Mn(II)-bearing phyllosilicates. However, a distinct increase in Mn oxidation state with depth and the predominance of birnessite-like Mn(IV) oxides was observed for suspended particles in a fjord with tertiary basalt geology. The similar dMn behaviour in fjords with different suspended particle Mn speciation (i.e., Mn(II)-bearing phyllosilicates and Mn(IV)-rich birnessite) is consistent with the decoupling of dissolved and particulate Mn and suggests that dMn concentrations on the scale of these fjords are controlled primarily by dilution of a freshwater dMn source rather than exchange between dissolved and particle phases. This work provides new insights into the Mn cycle in high latitude coastal waters, where small changes in the relative availabilities of dMn, dFe and macronutrients may affect the identity of the nutrient(s) proximally limiting primary production.
    Type: Article , PeerReviewed
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  • 3
    Publication Date: 2024-06-01
    Description: Mangrove forests provide valuable ecosystem services to coastal communities across tropical and subtropical regions. Current anthropogenic stressors threaten these ecosystems and urge researchers to create improved monitoring methods for better environmental management. Recent efforts that have focused on automatically quantifying the above-ground biomass using image analysis have found some success on high resolution imagery of mangrove forests that have sparse vegetation. In this study, we focus on stands of mangrove forests with dense vegetation consisting of the endemic Pelliciera rhizophorae and the more widespread Rhizophora mangle mangrove species located in the remote Utría National Park in the Colombian Pacific coast. Our developed workflow used consumer-grade Unoccupied Aerial System (UAS) imagery of the mangrove forests, from which large orthophoto mosaics and digital surface models are built. We apply convolutional neural networks (CNNs) for instance segmentation to accurately delineate (33% instance average precision) individual tree canopies for the Pelliciera rhizophorae species. We also apply CNNs for semantic segmentation to accurately identify (97% precision and 87% recall) the area coverage of the Rhizophora mangle mangrove tree species as well as the area coverage of surrounding mud and water land-cover classes. We provide a novel algorithm for merging predicted instance segmentation tiles of trees to recover tree shapes and sizes in overlapping border regions of tiles. Using the automatically segmented ground areas we interpolate their height from the digital surface model to generate a digital elevation model, significantly reducing the effort for ground pixel selection. Finally, we calculate a canopy height model from the digital surface and elevation models and combine it with the inventory of Pelliciera rhizophorae trees to derive the height of each individual mangrove tree. The resulting inventory of a mangrove forest, with individual P. rhizophorae tree height information, as well as crown shape and size descriptions, enables the use of allometric equations to calculate important monitoring metrics, such as above-ground biomass and carbon stocks.
    Keywords: mangrove forests ; forest inventory ; monitoring ; habitat mapping ; UAV ; UAS ; artificial ; intelligence ; machine learning ; instance segmentation ; semantic segmentation ; above ground biomass ; carbon stock
    Repository Name: National Museum of Natural History, Netherlands
    Type: info:eu-repo/semantics/article
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  • 4
    Publication Date: 2024-06-01
    Description: Coral reefs are the most biodiverse marine ecosystems, and host a wide range of taxonomic diversity in a complex spatial community structure. Existing coral reef survey methods struggle to accurately capture the taxonomic detail within the complex spatial structure of benthic communities. We propose a workflow to leverage underwater hyperspectral image transects and two machine learning algorithms to produce dense habitat maps of 1150 m2 of reefs across the Curaçao coastline. Our multi-method workflow labelled all 500+ million pixels with one of 43 classes at taxonomic family, genus or species level for corals, algae, sponges, or to substrate labels such as sediment, turf algae and cyanobacterial mats. With low annotation effort (only 2% of pixels) and no external data, our workflow enables accurate (Fbeta of 87%) survey-scale mapping, with unprecedented thematic detail and with fine spatial resolution (2.5 cm/pixel). Our assessments of the composition and configuration of the benthic communities of 23 image transects showed high consistency. Digitizing the reef habitat and community structure enables validation and novel analysis of pattern and scale in coral reef ecology. Our dense habitat maps reveal the inadequacies of point sampling methods to accurately describe reef benthic communities.
    Keywords: coral reefs ; habitat mapping ; hyperspectral imaging ; machine learning ; survey scale mapping ; thematic detail
    Repository Name: National Museum of Natural History, Netherlands
    Type: info:eu-repo/semantics/article
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  • 5
    Publication Date: 2024-06-01
    Description: Shallow-water rhodolith beds are rare in the Mediterranean Sea and generally poorly known. The Punta de la Mona rhodolith bed extends for 16,000 square meters in shallow and oligotrophic waters at the southern coast of Spain, off Almuñecar in the Alborán Sea. We present a detailed analysis of the structure (rhodolith cover and density, rhodolith size and shape, sediment granulometry) and morphospecies composition of the bed along a depth gradient. A stratified sampling was carried out at six depths (9, 12, 15, 18, 21, and 24 m), estimating rhodolith cover and abundance; rhodoliths were collected from one 30 by 30 cm quadrat for each transect, resulting in 18 samples and a total of 656 rhodoliths. The collected rhodoliths were measured and the coralline algal components identified morphoanatomically through a stereomicroscope and SEM. Sediment on the seafloor mainly consisted of pebbles and cobbles; the highest rhodolith cover occurred between 15 and 18 m, and the lowest at the shallowest and deepest transects (9 and 24 m). Mean Rhodolith size was similar throughout the depth range (23–35 mm) with a slight increase at 24 m, although the largest rhodoliths occurred at 21 m. In monospecific rhodoliths, size depended more on the forming species than on depth. We found 25 non-geniculate coralline morphospecies, nearly all rhodolith-forming morphospecies reported in the Mediterranean Sea in recent accounts. The highest morphospecies richness (18–19) and proportional abundance were found at intermediate depths (15–18 m), where rhodolith cover is also highest. Lithophyllum incrustans and Lithophyllum dentatum dominated at shallow depths (9–12 m), whereas Lithothamnion valens was the dominant species at intermediate and greater depths. Overall, the latter species was the most common in the rhodolith bed. The shallow-water rhodolith bed in Punta de la Mona is probably the most diverse in the Mediterranean Sea. This highlights the importance of the conservation of this habitat and, in general, emphasizes the role of the Alborán Sea as a diversity center of coralline algae. The Punta de la Mona example contradicts the common assumption in the geological literature that rhodolith beds are indicative of oligophotic environments with high nutrients levels.
    Keywords: coralline red algae ; depth-gradient patterns ; rhodolith cover and size ; rhodolith diversity ; Alboran sea
    Repository Name: National Museum of Natural History, Netherlands
    Type: info:eu-repo/semantics/article
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  • 6
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    Universidade Estadual de Maringá. Departamento de Biologia. Programa de Pós-Graduação em Ecologia de Ambientes Aquáticos Continentais.
    Publication Date: 2024-06-01
    Description: An essential question in ecology relies on whether to analyze functional diversity through species traits or to explore the traits' variability at the individual level. Traditionally, several studies have been based on unique values to represent species traits, assuming that intraspecific trait variation (ITV) has minimal impact on overall community trait variability. However, ITV can significantly influence assessments of individual and species adaptation to environmental disturbances, providing insights concerning density patterns, speciation, dispersal, and biological interactions. Thus, the importance of ITV was assessed from two perspectives: (i) community assembly rules and (ii) biological invasions. A dataset comprising ten morphological traits related to habitat use and diet of 5226 fishes belonging to 49 species that occupy the marginal areas of the Itaipu Reservoir (Brazil) was used as a case study. First, the relative contributions of ITV and species turnover (interspecific variability) to overall trait variability and the strength of internal and external filters on fish assemblages using individual traits were investigated. Species turnover accounted for most trait variance within assemblages, but ITV also played an important role for specific traits. Internal filters such as competition highly influence the functional diversity of fish species in an old reservoir. Alternatively, external filters (i.e., regional processes) did not present significant effects on functional traits, which may be related to their greater influence during the reservoir's filling phase. The difference between the functional niche occupied by native species and non-native ones, and the impact of non-native species dominance on the functional diversity patterns of native assemblages (indexed by functional richness, functional evenness, functional divergence, and functional redundancy) was also investigated. It was observed that the functional niche occupied by native species differs from non-native species, suggesting that non-native species have traits that enable them to exploit resources differently. Non-native species presented negative effects on the functional attributes of native fish populations, even in highly impacted environments such as reservoirs, reinforcing the importance of understanding the dynamics between native and non-native species in specific ecosystems. It is expected that the results of this study will assist in the development of public policies in the area of reservoir conservation, offering new insights into critical mechanisms associated with the biodiversity of the marginal regions of reservoirs that are exploited by human activities.
    Description: Uma questão fundamental na ecologia consiste na escolha entre analisar a diversidade funcional por meio de traços a nível de espécie ou explorar a variabilidade dentro de cada espécie, a nível de indivíduo. Tradicionalmente, a maioria dos estudos têm se baseado em valores únicos para representar os traços das espécies, assumindo que a variabilidade intraespecífica dos traços (VIT) tem um impacto mínimo na variabilidade geral dos traços em uma comunidade. No entanto, a VIT pode influenciar significativamente a adaptação das espécies a perturbações ambientais, fornecendo insights sobre padrões de densidade, especiação, dispersão e interações biológicas. Assim, a importância da VIT foi avaliada a partir de duas perspectivas: (i) regras de montagem de comunidades e (ii) invasões biológicas, utilizando como estudo de caso um conjunto de dados composto por 10 traços morfológicos relacionados ao uso de habitat e dieta de 5226 peixes pertencentes a 49 espécies que ocupam as margens do reservatório de Itaipu. Primeiro, investigou-se a contribuição relativa da VIT versus turnover de espécies (variabilidade interespecífica) para a variabilidade geral dos traços, e também quais filtros atuam sobre as assembleias de peixes utilizando dados a nível de indivíduo. O turnover de espécies representou a maior parte da variância dos traços dentro das assembleias, mas a VIT também exerceu um papel significativo, especialmente para alguns traços. Observou-se que os filtros internos, como a competição, parecem atuar sobre a diversidade funcional das espécies de peixes em um reservatório antigo. Filtros externos (ou seja, processos regionais) não apresentaram efeitos significativos, o que pode ser atribuído à sua provável maior influência durante a fase de formação do reservatório, onde mudanças ambientais ocorreram de forma mais frequente. Investigou-se também a diferença entre o nicho funcional ocupado por espécies nativas e não nativas, e o impacto da dominância de espécies não nativas sobre a riqueza, equitabilidade, divergência e redundância funcional das assembleias de peixes nativas. Observou-se que nicho funcional ocupado por espécies nativas difere das espécies não nativas, sugerindo que as espécies não nativas possuem traços que lhes permitem explorar recursos de maneira diferente. Também se demonstrou que espécies não nativas exerceram efeitos negativos nos atributos funcionais das populações de peixes nativos, mesmo em ambientes altamente impactados como os reservatórios, destacando a importância de compreender a dinâmica entre espécies nativas e não nativas dentro de ecossistemas específicos. Espera-se que os resultados deste estudo auxiliem na elaboração de políticas públicas na área da conservação de reservatórios, oferecendo novos insights sobre mecanismos críticos associados à biodiversidade das áreas marginais de reservatórios que são exploradas por atividades humanas.
    Description: PhD
    Keywords: Peixes de água doce ; Comunidades, Ecologia de ; Invasões biológicas ; Diversidade funcional ; Ecomorfologia ; Variabilidade intraespecífica dos traços (VIT) ; Reservatórios ; ASFA_2015::F::Freshwater fish ; ASFA_2015::F::Freshwater ecology ; ASFA_2015::C::Communities (ecological) ; ASFA_2015::D::Dams ; ASFA_2015::B::Biodiversity ; ASFA_2015::D
    Repository Name: AquaDocs
    Type: Thesis/Dissertation
    Format: 77pp.
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  • 7
    Publication Date: 2024-06-01
    Description: The State of the Ocean Report (StOR) has the ambition to inform policymakers about the state of the ocean and to stimulate research and policy actions towards ‘the ocean we need for the future we want’, contributing to the 2030 Agenda and in particular SDG 14, which reads ‘Conserve and sustainably use the oceans, seas and marine resources’, as well as other global processes such as the UNFCCC, the Convention on Biological Diversity and the Sendai Framework for Disaster Risk Reduction. Structured around the seven UN Decade of Ocean Science for Sustainable Development Outcomes, the Report provides important information about the achievements of the UN Ocean Decade and, in the longer term, about ocean well-being. The StOR will be used to inform policy and administrative priorities and identify research focus areas that need to be strengthened or developed.
    Description: Published
    Description: Refereed
    Keywords: Plastic pollution ; Ecosystem restoration ; Deoxygenation ; Blue carbon ecosystems ; Marine spatial planning (MSP) ; Sustainable production ; Sustainable food prduction ; Carbon dioxide ; Harmful algal blooms ; Global Ocean Observing System ; Data sharing ; ASFA_2015::P::Plastics ; ASFA_2015::A::Acidification ; ASFA_2015::G::Global warming ; ASFA_2015::C::Carbon
    Repository Name: AquaDocs
    Type: Report
    Format: 92pp.
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  • 8
    Publication Date: 2024-06-01
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , peerRev
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  • 9
    Publication Date: 2024-06-01
    Description: High-resolution multi-proxy records from two lakes on the southern Tibetan Plateau, Nam Co and Tangra Yumco, are used to infer long-term variations in the Asian monsoon system. We examine the moisture evolution during the Late Glacial Maximum and Holocene using the trace element and stable isotope composition of ostracod shells. The sediment records covering the past 24 cal. ka BP and 18 cal. ka BP, respectively, demonstrate the suitability of ostracod shell chemistry as paleoenvironmental proxy. We analysed (i) Mg/Ca, Ba/Ca and Sr/Ca ratios as salinity proxies, (ii) Fe/Ca, Mn/Ca and U/Ca ratios representing redox conditions and microbial activity, and (iii) rare earth elements (REEs) reflecting weathering and changes in provenance.
    Keywords: Ostracoda; Paleoclimate; Paleolimnology; Rare earth elements; Stable carbon and oxygen isotopes; trace elements ratio
    Type: Dataset
    Format: application/zip, 4 datasets
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  • 10
    Publication Date: 2024-06-01
    Description: This dataset presents benthic foraminiferal δ¹⁸O chronostratigraphies for International Ocean Discovery Program (IODP) Site U1541, Ocean Drilling Program (ODP) Site 1090 and ODP Site 980-981 based on different tuning targets including LR04 (Lisiecki and Raymo, 2005), LR09 (Lisiecki and Raymo, 2009), CENOGRID (Westerhold et al., 2020) and Probstack (Ahn et al., 2017) obtained by Middleton et al. (2024). The benthic foraminiferal δ¹⁸O record for IODP Site U1541 (54°13'S, 125°25'W) recently recovered from the central South Pacific on IODP Expedition 383 (Winckler et al., 2021) is shown for the first time and is published in Middleton et al. (2024). All data records are based on Cibicidoides wuellerstorfi and Cibicides kullenbergi, or combinations thereof. The dataset provides the basis for investigating and discussing the uncertainties of benthic foraminiferal δ¹⁸O stratigraphies for conventional manual and automated tuning techniques and evaluate their impact on sedimentary age models over the past 3.5 Myr (Middleton et al., 2024).
    Keywords: Integrated Ocean Drilling Program / International Ocean Discovery Program; IODP; Ocean Drilling Program; ODP
    Type: Dataset
    Format: application/zip, 7 datasets
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