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  • 1
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    Effects of ocean acidification on larval swimming behaviour of the cold-water coral Desmophyllum pertusum (2024)
    PANGAEA
    Details
    Publication Date: 2024-06-15
    Description: The objective of this study is to determine the effects of ocean acidification (OA) on the survival, development and swimming behaviour of embryos of the deep-sea coral Desmophyllum pertusum (syn. Lophelia pertusa). Upon spawning, fertilized embryos were collected and exposed to two pCO2 treatments corresponding to present pCO2 conditions (400 ppm) and future pCO2 conditions predicted under scenario IPCC RCP8.5 for the end of the century (1000 ppm). We monitored survival daily and we measured swimming velocity on day 9 after spawning. Temperature and pH were measured every 24h, salinity was measured every other day, and water samples were collected during the first and last day of the experiment to determine total alkalinity (TA). This dataset includes data on the effects of ocean acidification on swimming velocity of larvae of the deep-sea coral Desmophyllum pertusum. Embryos were exposed to two acidification (pCO2) treatments: present pCO2 conditions (400 ppm) and future pCO2 conditions predicted under RCP8.5 for the end of the century (1000 ppm). After rearing the embryos in the respective treatments for nine days, we recorded the swimming behaviour of larvae with a video camera. Videos were analyzed with manual particle tracking, and here we report the swimming velocity and total traveled distance of larvae in each experimental treatment.
    Keywords: ASSEMBLE_Plus; Association of European Marine Biological Laboratories Expanded; Climate change; cold-water coral; DATE/TIME; Deep sea; early life history; early life stages; iAtlantic; Image analysis, NIH ImageJ, MTrackJ plugin; Integrated Assessment of Atlantic Marine Ecosystems in Space and Time; Laboratory experiment; Larvae; larval behaviour; physiology; Remote operated vehicle; ROV; Sample ID; Species; Species, unique identification (Semantic URI); Species, unique identification (URI); Speed, swimming; Swim distance; Time in hours; Tisler_Sampling_Lophelia_pertusa_4; Tisler_Sampling_Lophelia_pertusa_6; Tisler Reef, Skagerrak; Treatment
    Type: Dataset
    Format: text/tab-separated-values, 480 data points
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    DATA PANGAEA
  • 2
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    Effects of ocean acidification on larval survival rates of the cold-water coral Desmophyllum pertusum (2024)
    PANGAEA
    Details
    Publication Date: 2024-06-15
    Description: The objective of this study is to determine the effects of ocean acidification (OA) on the survival, development and swimming behaviour of embryos of the deep-sea coral Desmophyllum pertusum (syn. Lophelia pertusa). Upon spawning, fertilized embryos were collected and exposed to two pCO2 treatments corresponding to present pCO2 conditions (400 ppm) and future pCO2 conditions predicted under scenario IPCC RCP8.5 for the end of the century (1000 ppm). We monitored survival daily and we measured swimming velocity on day 9 after spawning. Temperature and pH were measured every 24h, salinity was measured every other day, and water samples were collected during the first and last day of the experiment to determine total alkalinity (TA). This dataset includes data on the effects of OA on embryo and larval survival of the deep-sea coral Desmophyllum pertusum. Embryos (age: first cleavage and 2 cell stage) were exposed to two acidification (pCO2) treatments: present pCO2 conditions (400 ppm) and future pCO2 conditions predicted under RCP8.5 for the end of the century (1000 ppm) and reared for a total of nine days. We counted embryos and larvae daily to determine larval survival under the two treatments.
    Keywords: ASSEMBLE_Plus; Association of European Marine Biological Laboratories Expanded; Climate change; cold-water coral; DATE/TIME; Deep sea; early life history; early life stages; iAtlantic; Integrated Assessment of Atlantic Marine Ecosystems in Space and Time; Laboratory experiment; Larvae; larval behaviour; pH; pH meter, Mettler Toledo, Seven2Go pH /Ion meter S8; physiology; Remote operated vehicle; Replicate; ROV; Salinity; Sample ID; Species; Species, unique identification (Semantic URI); Species, unique identification (URI); Temperature, water; Time in hours; Tisler_Sampling_Lophelia_pertusa_4; Tisler_Sampling_Lophelia_pertusa_6; Tisler Reef, Skagerrak; Treatment; Visual counts
    Type: Dataset
    Format: text/tab-separated-values, 1116 data points
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    DATA PANGAEA
  • 3
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    The SeisComP seismological software package (2008)
    GFZ Data Services
    Details
    Publication Date: 2024-06-14
    Description: Abstract
    Description: SeisComP is a seismological software for data acquisition, processing, distribution and interactive analysis. The seismological software package has evolved within a decade from pure acquisition modules to a fully featured real-time earthquake monitoring software. The SeedLink protocol for seismic data transmission has been the core of SeisComP from the very beginning. Later additions included simple, purely automatic event detection, location and magnitude determination capabilities. Especially within the development of the 3rd-generation SeisComP, also known as SeisComP3 automatic processing capabilities have been augmented by graphical user interfaces (GUIs) for visualization, rapid event review and quality control.Communication between the modules is achieved using a dedicated messaging system that allows distributed computing and remote review. For seismological metadata exchange export/import tools to/from QuakeML and FDSN StationXML are available, which also provide convenient interfaces with 3rd-party software. The initial SeisComP3 development took place at GFZ between 2006 and 2008 within the GITEWS project (German Indonesian Tsunami Early Warning System) and continued with increasing engagement of gempa GmbH, a software company established by the initial development team of the GFZ.
    Keywords: real-time ; data ; processing ; earthquakes ; monitoring ; fdsn ; standards ; seismology ; C++ ; python ; AGPL ; open ; EARTH SCIENCE SERVICES 〉 DATA ANALYSIS AND VISUALIZATION ; EARTH SCIENCE 〉 SOLID EARTH 〉 TECTONICS 〉 EARTHQUAKES ; EARTH SCIENCE
    Language: English
    Type: Software
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    DATA GFZ
  • 4
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    Geophysical Imaging of Deep EarthShape (GIDES): Seismic data of the Private Reserve Santa Gracia, Chile (2024)
    GFZ Data Services
    Details
    Publication Date: 2024-06-14
    Description: Abstract
    Description: The dataset contains the seismic weight drop data acquired in Private Reserve Santa Gracia, Chile. The data acquisition was conducted as a part of the EarthShape project in the subproject of Geophysical Imaging of the Deep EarthShape (GIDES). The seismic line was setup to cut across an existing borehole location with core and geophysical logging data available (Krone et al., 2021; Weckmann et al., 2020). The data was acquired to image the deep weathering zone identified by the borehole data across the seismic profile. Included in the datasets are the raw data of the CUBE data logger, SEG-Y data of the recorded shots, and the shot and receiver geometry data. A vital aspect of comprehending the interplay between geological and biological processes lies in the imaging of the critical zone, located deep beneath the surface, where the transition from unaltered bedrock to fragmented regolith occurs. It had been hypothesized that the depth of such weathering zone is dependent on the climate condition of the area. A more humid climate with higher precipitation will result in a deeper weathering front. As a part of the EarthShape project (SPP-1803 ‘EarthShape: Earth Surface Shaping by Biota’), specifically the Geophysical Imaging of the Deep EarthShape (GIDES - Grant No. KR 2073/5-1), we aim to image the weathering zone using the geophysical approach. Using the seismic method, we can differentiate different weathered layers based on the seismic velocity while also providing a 2D subsurface image of the critical zone. We conducted a seismic weight drop experiment in the Private Reserve Santa Gracia, Chile, to observe the depth of the weathering zone in a semi-arid climate and compare the resulting model with existing borehole data (Krone et al., 2021; Weckmann et al., 2020). The acquired data can then be used for multiple seismic imaging techniques, including body wave tomography and multichannel analysis of surface waves.
    Description: Other
    Description: The DFG Priority Program 1803 "EarthShape - Earth Surface Shaping by Biota" (2016-2022; https://www.earthshape.net/) explored between scientific disciplines and includes geoscientists and biologists to study from different viewpoints the complex question how microorganisms, animals, and plants influence the shape and development of the Earth’s surface over time scales from the present-day to the young geologic past. All study sites are located in the north-to-south trending Coastal Cordillera mountains of Chile, South America. These sites span from the Atacama Desert in the north to the Araucaria forests approximately 1300 km to the south. The site selection contains a large ecological and climate gradient ranging from very dry to humid climate conditions.
    Keywords: Geophysics ; seismic ; weight drop ; weathering zone ; critical zone ; bedrock ; granite ; passive seismic ; 3C sensor ; EarthShape ; Chile ; Coastal Cordillera ; Private Reserve Santa Gracia ; CONTROLLED_SOURCE_SEISMOLOGY 〉 REFRACTION ; CONTROLLED_SOURCE_SEISMOLOGY 〉 WEIGHT-DROP_SOURCE ; CONTROLLED_SOURCE_SEISMOLOGY 〉 NEAR_SURFACE ; PASSIVE_SEISMIC 〉 STATIONS ; SENSOR 〉 GEOPHONE ; SENSOR 〉 3-C ; LAND ; SEG-Y_DATA_FORMAT ; MINISEED_DATA_FORMAT ; CONTROLLED_SOURCE_SEISMOLOGY 〉 RAW_DATA ; CONTROLLED_SOURCE_SEISMOLOGY 〉 VERTICALLY_STACKED_DATA ; EARTH SCIENCE 〉 SOLID EARTH ; EARTH SCIENCE 〉 SOLID EARTH 〉 TECTONICS 〉 EARTHQUAKES 〉 SEISMIC PROFILE
    Type: Dataset , Dataset
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    DATA GFZ
  • 5
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    New insights into the geometry of gas chimneys in the Gorgan plain through seismic attribute integration (2024)
    Springer
    Details
    Publication Date: 2024-06-14
    Description: Gas chimneys and gas clouds in the subsurface media are known as one of the indications of possible petroleum reservoirs. Investigations of their properties are mostly initiated by seismic attribute interpretation on reflection seismic data. However, due to the complexity of their behavior and their difficult interpretation of seismic attributes, state-of-the-art methods are mostly required to be applied on the seismic data to prevent any misinterpretation. This is mostly done through attribute integration and multi-attribute analysis. This research presents a study on seismic attributes and integration on several 2D seismic reflection lines from the Gorgan Plain. It is located in Northeast Iran, on the western border of the region’s well-known Kopeh-Dagh fold and thrust belt, and southeastern border of the South Caspian Basin. Hydrocarbon systems of the Gorgan Plain are poorly known and have not been widely studied, but according to preliminary investigations, this region has the potential for hydrocarbon occurrences. The aim of this study is to investigate presence and then delaminate the affected area of possible gas chimneys that are related to possible hydrocarbon reservoirs. Gas chimneys are assumed to be created due to the routes, mostly made by faults, that provoke light hydrocarbons components to migrate toward the surface. Preliminary interpretations of seismic reflection data in this study revealed that at least two gas chimneys occurred within the Gorgan Plain. As it was mentioned, since they are mostly due to the faulting above the hydrocarbon reservoir, gas chimney and heavy faulting might exhibit the same effects on the seismic data and then on its attributes, which are amplitude reduction and high damping on energies, distortion of the waveshape and seismic velocity reduction. Thus, care should be taken in separation of these two different geologic phenomena on seismic attributes. This also was done in this study through utilized integration of the most relevant seismic attributes such as Instantaneous-phase, Chaos, Variance and Remove-bias attributes. Based on the result of interpretations and according to the evolution of the basin and its structural reconstruction on other studies, gas chimneys of the Gorgan Plain, are in relation to the operation of fault zones in Cenozoic erathem in the region. These fault zones which cut the entire Cenozoic erathem, create the pathway for vertical migration of hydrocarbons through Cheleken formation (reservoir rock) and its overburden sedimentary sequences. In other words, operation of fault zones within Cenozoic sedimentary sequence, is the main reason for gas seepage in the Gorgan Plain, which is also shown in seismic data.
    Type: Article , PeerReviewed
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  • 6
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    High-resolution carbon and oxygen isotopic compositions of cultured brachiopods: Effect of pH, temperature and growth (2024)
    Elsevier
    Details
    Publication Date: 2024-06-14
    Description: Highlights • δ13C and δ18O profiles increase from exterior to interior until reaching a plateau. • Primary Layer δ13C reflects the δ13C of the Dissolved Inorganic Carbon. • In high pCO2 experiments, δ13C and δ18O closer to equilibrium fields. • Brachiopods grow according to an incremental growth model. Abstract Brachiopod shells are ubiquitous since the Early Cambrian up to now. As they secrete a shell made of low-magnesium calcite, more resistant to diagenesis than biocarbonates richer in Mg, their geochemical signatures are generally considered a powerful tool for paleo-environmental and paleo-climatic reconstructions. However, gaps in knowledge still remain on the underlying controls of the shell chemistry, in particular at a high spatial resolution. In this study, in situ oxygen and carbon isotope measurements by SIMS (Secondary Ion Mass Spectrometry) were performed in brachiopod shells of the cold-temperate water species Magellania venosa, constituted of a primary and a secondary layer. The individual specimens studied here grew under controlled conditions mimicking the natural environment and in experiments under low-pH (high pCO2) and high-temperature conditions. Transversal carbon and oxygen profiles showed a “brachiopod pattern” typical of extant two-layered brachiopods, with the primary layer depleted in 18O and 13C relative to equilibrium and the secondary layer showing a gradual increasing trend until reaching a near-equilibrium plateau. Overall, shells cultured at low pH were found to have δ18O and δ13C values closer to equilibrium when compared to shells from the control experiment. These near-equilibrium values may reflect a decrease in shell precipitation rate, leading to less kinetic effects, and/or a more rapid kinetics for the equilibration between DIC species and water. By close pairing of seawater δ18O and δ13C to that of shell microstructure, our study enables us to derive layer-specific C and O enrichment factors, which show the extent of pH and temperature effects superimposed on the seawater δ18O and DIC δ13C signal inherited. Finally, we show that during brachiopod shell growth, newly precipitated calcite is added to the calcite already existing, thus empirically validating the conceptual accretionary growth model proposed by Ackerly (1989).
    Type: Article , PeerReviewed , info:eu-repo/semantics/article
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  • 7
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    Magnetic orientation in juvenile Atlantic herring ( Clupea harengus ) could involve cryptochrome 4 as a potential magnetoreceptor (2024)
    Details
    Publication Date: 2024-06-14
    Description: The Earth's magnetic field can provide reliable directional information, allowing migrating animals to orient themselves using a magnetic compass or estimate their position relative to a target using map-based orientation. Here we show for the first time that young, inexperienced herring (Clupea harengus, Ch) have a magnetic compass when they migrate hundreds of kilometres to their feeding grounds. In birds, such as the European robin (Erithacus rubecula), radical pair-based magnetoreception involving cryptochrome 4 (ErCRY4) was demonstrated; the molecular basis of magnetoreception in fish is still elusive. We show that cry4 expression in the eye of herring is upregulated during the migratory season, but not before, indicating a possible use for migration. The amino acid structure of herring ChCRY4 shows four tryptophans and a flavin adenine dinucleotide-binding site, a prerequisite for a magnetic receptor. Using homology modelling, we successfully reconstructed ChCRY4 of herring, DrCRY4 of zebrafish (Danio rerio) and StCRY4 of brown trout (Salmo trutta) and showed that ChCRY4, DrCRY4 and ErCRY4a, but not StCRY4, exhibit very comparable dynamic behaviour. The electron transfer could take place in ChCRY4 in a similar way to ErCRY4a. The combined behavioural, transcriptomic and simulation experiments provide evidence that CRY4 could act as a magnetoreceptor in Atlantic herring.
    Type: Article , PeerReviewed
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  • 8
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    Impact of green and blue‐green light on the growth, pigment concentration, and fatty acid unsaturation in the microalga Monoraphidium braunii (2024)
    Wiley
    Details
    Publication Date: 2024-06-14
    Description: The spectral composition of light is an important factor for the metabolism of photosynthetic organisms. Several blue light-regulated metabolic processes have already been identified in the industrially relevant microalga Monoraphidium braunii. However, little is known about the spectral impact on this species' growth, fatty acid (FA), and pigment composition. In this study, M. braunii was cultivated under different light spectra (white light: 400–700 nm, blue light: 400–550 nm, green light: 450–600 nm, and red light: 580–700 nm) at 25°C for 96 h. The growth was monitored daily. Additionally, the FA composition, and pigment concentration was analyzed after 96 h. The highest biomass production was observed upon white light and red light irradiation. However, green light also led to comparably high biomass production, fueling the scientific debate about the contribution of weakly absorbed light wavelengths to microalgal biomass production. All light spectra (white, blue, and green) that comprised blue-green light (450–550 nm) led to a higher degree of FA unsaturation and a greater concentration of all identified pigments than red light. These results further contribute to the growing understanding that blue-green light is an essential trigger for maximized pigment concentration and FA unsaturation in green microalgae.
    Type: Article , PeerReviewed
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  • 9
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    Ocean alkalinity enhancement using sodium carbonate salts does not lead to measurable changes in Fe dynamics in a mesocosm experiment (2024)
    Copernicus Publications (EGU)
    Details
    Publication Date: 2024-06-14
    Description: The addition of carbonate minerals to seawater through an artificial ocean alkalinity enhancement (OAE) process increases the concentrations of hydroxide, bicarbonate, and carbonate ions. This leads to changes in the pH and the buffering capacity of the seawater. Consequently, OAE could have relevant effects on marine organisms and in the speciation and concentration of trace metals that are essential for their physiology. During September and October 2021, a mesocosm experiment was carried out in the coastal waters of Gran Canaria (Spain), consisting on the controlled variation of total alkalinity (TA). Different concentrations of carbonate salts (NaHCO3 and Na2CO3) previously homogenized were added to each mesocosm to achieve an alkalinity gradient between Δ0 to Δ2400 µmol L−1. The lowest point of the gradient was 2400 µmol kg−1, being the natural alkalinity of the medium, and the highest point was 4800 µmol kg−1. Iron (Fe) speciation was monitored during this experiment to analyse total dissolved iron (TdFe, unfiltered samples), dissolved iron (dFe, filtered through a 0.2 µm pore size filter), soluble iron (sFe, filtered through a 0.02 µm pore size filter), dissolved labile iron (dFe′), iron-binding ligands (LFe), and their conditional stability constants () because of change due to OAE and the experimental conditions in each mesocosm. Observed iron concentrations were within the expected range for coastal waters, with no significant increases due to OAE. However, there were variations in Fe size fractionation during the experiment. This could potentially be due to chemical changes caused by OAE, but such an effect is masked by the stronger biological interactions. In terms of size fractionation, sFe was below 1.0 nmol L−1, dFe concentrations were within 0.5–4.0 nmol L−1, and TdFe was within 1.5–7.5 nmol L−1. Our results show that over 99 % of Fe was complexed, mainly by L1 and L2 ligands with ranging between 10.92 ± 0.11 and 12.68 ± 0.32, with LFe ranging from 1.51 ± 0.18 to 12.3 ± 1.8 nmol L−1. Our data on iron size fractionation, concentration, and iron-binding ligands substantiate that the introduction of sodium salts in this mesocosm experiment did not modify iron dynamics. As a consequence, phytoplankton remained unaffected by alterations in this crucial element.
    Type: Article , PeerReviewed , info:eu-repo/semantics/article
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  • 10
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    UXO and environmental risk factors impacting EOD operations in German waters** (2024)
    Wiley
    Details
    Publication Date: 2024-06-14
    Description: This article presents risk factors that are associated with the handling of unexploded ordnance (UXO) during explosive ordnance disposal (EOD) operations in German waters. The construction of offshore wind parks and the German immediate action program are expected to increase the number of EOD operations. Existing literature and guidelines do not offer a structured and reproducible framework for assessing EOD risk. To fill this gap, a network of EOD risk factors was developed by means of a literature review and validation via expert consultation. The study was scoped to “personnel and equipment at the EOD location” as the risk receptor and “undesired detonation” as the undesired event under investigation. Factors are subdivided into UXO factors that depend on the object that should be handled and factors that describe the object's surrounding environment. While the former can be researched by an EOD expert, the latter must be measured on site or acquired from a model. Each of these factors contributes to risk, some directly and others indirectly via other factors. The complexity of the resulting network, with its 33 factors, demonstrates the need for a reliable and reproducible model to quantify EOD risk. Its purpose is not to replace EOD experts but to aid them in their decision‐making process. Such a tool can provide valuable support for the high‐cost and high‐risk EOD operations.
    Type: Article , PeerReviewed , info:eu-repo/semantics/article
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