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  • Data  (23)
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  • 1
    Publication Date: 2024-02-27
    Description: Herein we report the respiration rates (O2 consumption) of the cold-water coral Viminella flagellum exposed to acute Cu concentrations. In a lab experiment, sixty nubbins of V. flagellum were distributed in six aquaria of 8 L (ten nubbins per aquarium) of each Cu solution (0 (control); 60; 150; 250; 450 and 600 μg/L) for 96 h. After this period, four nubbins from each Cu treatment, selected randomly, were incubated individually for 6 h in glass chambers filled with ca. 110 mL of 0.2 μm pre-filtered seawater, with the respective Cu dilutions (4 chambers per Cu concentration). The incubation period was set to 6 h to record changes in O2 consumption without exposing corals to oxygen levels below 80 % (air saturation, a.s.). During the incubation period, dissolved O2 (μmol/L) depletion rates were recorded every 30 min and corrected by the corresponding rates/variations in chambers without corals. Coral respiration rates were normalized to the coral surface area and time. Results are presented by µmol of O2 consumption per m2 per h.
    Keywords: Azores_Deep_Octocoral_Sampling_Viminella_flagellum; Chamber number; cold-water octocoral; Condor Seamounts; copper; Copper; iAtlantic; INCUB; Incubation; Integrated Assessment of Atlantic Marine Ecosystems in Space and Time; Marine Ecosystem Restoration in Changing European Seas; MERCES; Oxygen consumption; Respiration rate; Specimen identification
    Type: Dataset
    Format: text/tab-separated-values, 114 data points
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  • 2
    Publication Date: 2024-02-27
    Description: We report the results of an aquaria-based experiment testing the effects of suspended particles generated during potential mining activities, on a common habitat-building coral species in the Azores, Dentomuricea aff. meteor. Corals were collected from the summit of Condor Seamount (Azores, NE Atlantic) at depths between 185-210 m in August 2014. Coral fragments were maintained in 10-L aquaria and exposed to three experimental treatments for a period of four weeks at the DeepSeaLab aquaria facilities (Okeanos-University of the Azores): (1) control conditions (no added sediments); (2) suspended polymetallic sulphide (PMS) particles; (3) suspended quartz particles. PMS particles were obtained by grinding PMS inactive chimney rocks collected at the hydrothermal vent field Lucky Strike. Both particle types were delivered at a concentration of 25 mg L-1. The putative effects of PMS particles were evaluated through measurements of the coral physiological responses at the levels of the organism (oxygen consumption, ammonium excretion), tissue (bioaccumulation of metals) and cell (enzyme activity and gene expression).
    Keywords: ATLAS; A Trans-Atlantic assessment and deep-water ecosystem-based spatial management plan for Europe; Cnidaria; Condor Seamounts; enzyme activity; experiment; gene expression; iAtlantic; Integrated Assessment of Atlantic Marine Ecosystems in Space and Time; JPI Oceans - Ecological Aspects of Deep-Sea Mining; JPIO-MiningImpact; Managing Impacts of Deep-seA reSource exploitation; metabolism; metal bioaccumulation; MIDAS; North Atlantic; octocorals; Sampling_Azores_Cold_Water_Octocoral
    Type: Dataset
    Format: application/zip, 7 datasets
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  • 3
    Publication Date: 2024-02-27
    Description: We report the results of an aquaria-based experiment testing the effects of suspended particles generated during potential mining activities, on a common habitat-building coral species in the Azores, Dentomuricea aff. meteor. Coral fragments were maintained in 10-L aquaria and exposed to three experimental treatments for a period of four weeks at the DeepSeaLab aquaria facilities (Okeanos-University of the Azores): (1) control conditions (no added sediments); (2) suspended polymetallic sulphide (PMS) particles; (3) suspended quartz particles. The concentration of suspended PMS and quartz particles in each treatment was measured during an exposure period of 4 hours. Suspended particle concentrations were measured one minute after particle addition, and then at intervals of 5, 15, 30 minutes, 1 hour, 2 hours and 4 hours after particle addition in the PMS and quartz particle treatments and in control aquaria with no particle addition.
    Keywords: Aquarium number; ATLAS; A Trans-Atlantic assessment and deep-water ecosystem-based spatial management plan for Europe; Cnidaria; Condor Seamounts; enzyme activity; experiment; gene expression; iAtlantic; Integrated Assessment of Atlantic Marine Ecosystems in Space and Time; JPI Oceans - Ecological Aspects of Deep-Sea Mining; JPIO-MiningImpact; Managing Impacts of Deep-seA reSource exploitation; Measurement duration; metabolism; metal bioaccumulation; MIDAS; North Atlantic; octocorals; Sampling_Azores_Cold_Water_Octocoral; Suspended polymetallic sulfide; Suspended quartz
    Type: Dataset
    Format: text/tab-separated-values, 92 data points
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  • 4
    Publication Date: 2024-02-27
    Description: We report the results of an aquaria-based experiment testing the effects of suspended particles generated during potential mining activities, on a common habitat-building coral species in the Azores, Dentomuricea aff. meteor. Coral fragments were maintained in 10-L aquaria and exposed to three experimental treatments for a period of four weeks at the DeepSeaLab aquaria facilities (Okeanos-University of the Azores): (1) control conditions (no added sediments); (2) suspended polymetallic sulphide (PMS) particles; (3) suspended quartz particles. Seawater physical-chemical parameters were measured daily in each aquarium. Seawater salinity was measured with a S30 SevenEasy™ conductivity meter, pH and temperature with a glass electrode (Crison pH 25+), and oxygen with a Fibox4 (PreSens) with a Oxygen Dipping Probe DP-PSt3. Seawater samples for inorganic nutrient analyses were collected on times 0 (immediately before the start of the experiment), and once a week on days 6, 13, 20 and 27 of the experiment and determined using a colorimetric autoanalyzer Sanplus with segmented flow.
    Keywords: Ammonia+Ammonium; Aquarium number; ATLAS; A Trans-Atlantic assessment and deep-water ecosystem-based spatial management plan for Europe; Cnidaria; Colorimetric autoanalysis; Condor Seamounts; Conductivity meter, S30 SevenEasy; Dissolved oxygen, in water, interpolated; enzyme activity; experiment; Experimental treatment; Experiment duration; Fiber optic oxygen meter, Fibox 4, Presens, Germany; gene expression; Glass electrode (Crison pH 25+); iAtlantic; Integrated Assessment of Atlantic Marine Ecosystems in Space and Time; JPI Oceans - Ecological Aspects of Deep-Sea Mining; JPIO-MiningImpact; Managing Impacts of Deep-seA reSource exploitation; metabolism; metal bioaccumulation; MIDAS; Nitrate; North Atlantic; octocorals; pH; Salinity; Sampling_Azores_Cold_Water_Octocoral; Temperature, water
    Type: Dataset
    Format: text/tab-separated-values, 913 data points
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  • 5
    Publication Date: 2024-02-27
    Description: We report the results of an aquaria-based experiment testing the effects of suspended particles generated during potential mining activities, on a common habitat-building coral species in the Azores, Dentomuricea aff. meteor. Coral fragments were maintained in 10-L aquaria and exposed to three experimental treatments for a period of four weeks at the DeepSeaLab aquaria facilities (Okeanos-University of the Azores): (1) control conditions (no added sediments); (2) suspended polymetallic sulphide (PMS) particles; (3) suspended quartz particles. Trace elements in the tissues and skeletons of corals at the end of the experiment were quantified by a quadrupole ICPMS (Thermo Elemental, X-Series). The metal concentrations in coral tissues are given in microgram per gram of dry weight tissue (μg g-1; dw).
    Keywords: Aquarium number; ATLAS; A Trans-Atlantic assessment and deep-water ecosystem-based spatial management plan for Europe; Cnidaria; Cobalt; Condor Seamounts; Copper; enzyme activity; experiment; Experimental treatment; gene expression; iAtlantic; ICP-MS; Inductively coupled plasma mass spectrometry; Integrated Assessment of Atlantic Marine Ecosystems in Space and Time; JPI Oceans - Ecological Aspects of Deep-Sea Mining; JPIO-MiningImpact; Managing Impacts of Deep-seA reSource exploitation; Manganese; metabolism; metal bioaccumulation; MIDAS; North Atlantic; octocorals; Sample material; Sampling_Azores_Cold_Water_Octocoral; Specimen identification
    Type: Dataset
    Format: text/tab-separated-values, 182 data points
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  • 6
    Publication Date: 2024-02-27
    Description: We report the results of an aquaria-based experiment testing the effects of suspended particles generated during potential mining activities, on a common habitat-building coral species in the Azores, Dentomuricea aff. meteor. Coral fragments were maintained in 10-L aquaria and exposed to three experimental treatments for a period of four weeks at the DeepSeaLab aquaria facilities (Okeanos-University of the Azores): (1) control conditions (no added sediments); (2) suspended polymetallic sulphide (PMS) particles; (3) suspended quartz particles. Integrated measurements of coral respiration and ammonium release rates were carried out by closed-chamber incubation in cylindrical acrylic chambers on days 0, 13 and 27 of the experiment using an oxygen meter Fibox4 with a PSt3 sensor (PreSens, Germany). Coral respiration and excretion rates were normalized to the coral skeletal surface area.
    Keywords: Ammonium, excretion; Aquarium number; ATLAS; A Trans-Atlantic assessment and deep-water ecosystem-based spatial management plan for Europe; Cnidaria; Colorimetric autoanalysis; Condor Seamounts; enzyme activity; experiment; Experimental treatment; Experiment duration; Fiber optic oxygen meter, Fibox 4, Presens, Germany; gene expression; iAtlantic; Integrated Assessment of Atlantic Marine Ecosystems in Space and Time; Managing Impacts of Deep-seA reSource exploitation; metabolism; metal bioaccumulation; MIDAS; North Atlantic; octocorals; Respiration rate, oxygen; Sampling_Azores_Cold_Water_Octocoral; Specimen identification
    Type: Dataset
    Format: text/tab-separated-values, 233 data points
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  • 7
    Publication Date: 2024-02-27
    Description: We report the results of an aquaria-based experiment testing the effects of suspended particles generated during potential mining activities, on a common habitat-building coral species in the Azores, Dentomuricea aff. meteor. Coral fragments were maintained in 10-L aquaria and exposed to three experimental treatments for a period of four weeks at the DeepSeaLab aquaria facilities (Okeanos-University of the Azores): (1) control conditions (no added sediments); (2) suspended polymetallic sulphide (PMS) particles; (3) suspended quartz particles. Antioxidant stress related biomarkers (glutathione S−transferase, superoxide dismutase, catalase, malondialdehyde) in D. aff. meteor tissues were used to evaluate the degree of cellular stress induced by exposure to PMS and quartz particles at times 0 and 13 days in all treatments and from the control and quartz treatments also at time 27 days of the experiment.
    Keywords: Activity description; Aquarium number; ATLAS; A Trans-Atlantic assessment and deep-water ecosystem-based spatial management plan for Europe; Biomarker; Cnidaria; Condor Seamounts; enzyme activity; experiment; Experimental treatment; Experiment duration; gene expression; iAtlantic; Integrated Assessment of Atlantic Marine Ecosystems in Space and Time; JPI Oceans - Ecological Aspects of Deep-Sea Mining; JPIO-MiningImpact; Managing Impacts of Deep-seA reSource exploitation; metabolism; metal bioaccumulation; MIDAS; North Atlantic; octocorals; Sampling_Azores_Cold_Water_Octocoral; SPEC; Specimen identification; Spectrophotometer
    Type: Dataset
    Format: text/tab-separated-values, 702 data points
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  • 8
    Publication Date: 2024-02-27
    Description: We report the results of an aquaria-based experiment testing the effects of suspended particles generated during potential mining activities, on a common habitat-building coral species in the Azores, Dentomuricea aff. meteor. Coral fragments were maintained in 10-L aquaria and exposed to three experimental treatments for a period of four weeks at the DeepSeaLab aquaria facilities (Okeanos-University of the Azores): (1) control conditions (no added sediments); (2) suspended polymetallic sulphide (PMS) particles; (3) suspended quartz particles. Gene expression profiles in D. aff. meteor were used to evaluate the physiological pathways involved in the response to exposure to PMS and quartz particles. Coral fragments were collected from each treatment at times 0, 3, and 13 days and for the control and quartz treatments also at time 27 days. The study targeted genes involved in cellular stress and antioxidant reaction system (heat shock protein, superoxide dismutase, ferritin), cell structure/integrity (α-carbonic anhydrase, receptor-type protein tyrosine phosphatase) and immune responses (toll-like receptor, lysozyme, rel homology domain, ferritin).
    Keywords: ATLAS; A Trans-Atlantic assessment and deep-water ecosystem-based spatial management plan for Europe; Cnidaria; Condor Seamounts; Cycles; enzyme activity; experiment; Experimental treatment; Experiment duration; gene expression; Gene expression, fold change, relative; Gene expression, fold change, relative, standard error; Gene name; iAtlantic; Integrated Assessment of Atlantic Marine Ecosystems in Space and Time; JPI Oceans - Ecological Aspects of Deep-Sea Mining; JPIO-MiningImpact; Managing Impacts of Deep-seA reSource exploitation; metabolism; metal bioaccumulation; MIDAS; North Atlantic; octocorals; Real-Time PCR, CFX Connect™ Real-Time PCR Detection System (BioRad); Sampling_Azores_Cold_Water_Octocoral; Specimen identification
    Type: Dataset
    Format: text/tab-separated-values, 2488 data points
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  • 9
    Publication Date: 2024-04-20
    Description: It is increasingly recognised that deep-sea mining of seafloor massive sulphides (SMS) could become an important source of mineral resources. These operations will remove the targeted substrate and produce potentially sediment toxic plumes from in situ seabed excavation and from the return water pumped back down to the seafloor. However, the spatial extent of the impacts of deep-sea mining plumes is still uncertain because few field experiments and models of plumes dispersion have been conducted. Morato et al. (2022) used three-dimensional hydrodynamic models of the Azores region together with a theoretical commercial mining operation of polymetallic SMS to simulate the potential dispersal of sediment plumes originating from different phases of mining operations and to assess the magnitude of potential impacts. The areas used in the modelling work were (from North to South): Cavala seamount (38.265, -30.710), Lucky Strike Hole (37.503, -31.955), Menez Hom (37.109, -32.618), Famous (37.001, -33.039), Saldanha (36.658, -33.420), and Rainbow (36.262 -33.824). The datasets published here contain all the model outputs, namely for 1) the in situ excavation sediment plume, 2) the return water discharge plume, and 3) the return sediments discharge plume: 1) The concentration of solids and of the discharge water in each horizontal 2-dimensional space cell is calculated as the maximum concentration in the 50 vertical layers of each 2-dimensional cell, for each output time step (3 hours), averaged over all time steps during each trimester and during a 12-months simulation. 1.1) Concentration of sediments produced during the in situ excavation sediment plume calculated as the maximum concentration in the 50 vertical layers of each 2-dimensional cell, for each output time step (3 hours), averaged over all time steps during a 12-months simulation. Sediments were composed of six classes of different particle diameter (0-10 μm, 10-50 μm, 50-100 μm, 100-200 μm, 200-2,000 μm, and 〉2,000 μm), an average particle density of 3,780 kg·m-3, and resultant settling velocities ranging from 75.1 cm·s-1 to 0.002 cm·s-1. 1.2) Concentration of return water discharge plume (shown in dilution folds) in six study areas calculated as the maximum concentration in the 50 vertical layers of each 2-dimensional cell, for each output time step (3 hours), averaged over all time steps during a 12-months simulation and assuming a control temperature as the annual minimum temperature of each location (T1). The salinity of discharge was calculated assuming the MOHID salinity of 83.3% surface water and 16.7% of seafloor water. 1.3) Concentration of sediments in the return sediment discharge plume, calculated as the maximum concentration in the 50 vertical layers of each 2-dimensional cell, for each output time step (3 hours), averaged over all time steps during a 12-months simulation. The average particle diameter was assumed to be 4 µm with an average particle density of 3,780 kg·m-3 and a resultant settling velocity of 0.002 cm·s-1. 2) The proportion of simulated time (temporal frequency) that a specific 2-dimensional space contained plume concentrations higher than the adopted thresholds; 1.2 mg·L-1 for sediment solids and 5,000 fold dilution for discharge water. Those cells whose temporal frequency above the thresholds was greater than 50%, i.e. 6 months out of 12 months, were considered as cells with persistent plumes. 2.1) Proportion of simulated time (temporal frequency) that a specific a 2-dimensional space cell, in six study areas, contained in situ excavation sediment plume above a 1.2 mg·L-1 concentration threshold, during a 12-months simulation, assuming six classes of particle diameter (0-10 μm, 10-50 μm, 50-100 μm, 100-200 μm, 200-2,000 μm, and 〉2,000 μm), an average particle density of 3,780 kg·m-3, and resultant settling velocities ranging from 75.1 cm·s-1 to 0.002 cm·s-1. 2.2) Proportion of simulated time (temporal frequency) that a specific 2-dimensional space, in six study areas, contained return water discharge plume concentrations higher than the adopted thresholds (i.e., 5,000 fold dilution), during a 12-months simulation and assuming a control temperature as the annual minimum temperature of each location (T1). The salinity of discharge was calculated assuming the MOHID salinity of 83.3% surface water and 16.7% of seafloor water. 2.3) Proportion of simulated time (temporal frequency) that a specific 2-dimensional space cell, in six study areas, contained return sediments discharge plume above a 1.2 mg·L-1 concentration threshold, during a 12-months simulation, assuming an average particle diameter of 4 µm, an average particle density of 3,780 kg·m-3, and a resultant settling velocity of 0.002 cm·s-1. 3) In addition to the thresholds and targets described above, the datasets also present the model results for Cavala seamount and Lucky Strike Hole against other thresholds: 5 mg·L-1, 10 mg·L-1 and 25 mg·L-1 for sediments and 1,000, 600, 300 and 200 fold dilution for discharge water. 4) Seasonal variations in the model outputs for plumes dispersal are also presented for Cavala seamount and Lucky Strike Hole by computing the probability of concentration above thresholds for four periods of three months (January-March, April-June, July-September, and October-December). In these scenarios, the model run duration was approximately 90 days. 5) The sediment thickness of the settled sediments from the discharge sediment and excavation. 5.1) Bottom thickness of settled sediments produced during the in situ excavation sediment plume assuming six classes of particle diameter (0-10 μm, 10-50 μm, 50-100 μm, 100-200 μm, 200-2,000 μm, and 〉2,000 μm), an average particle density of 3,780 kg·m-3, and resultant settling velocities ranging from 75.1 cm·s-1 to 0.002 cm·s-1. The duration of the simulation is one year. 5.2) Bottom thickness of settled sediments from the return sediment discharge plume modelled assuming an average particle diameter of 4 µm, an average particle density of 3,780 kg·m-3, and a resultant settling velocity of 0.002 cm·s-1. The duration of the simulation is one year.
    Keywords: ATLAS; A Trans-Atlantic assessment and deep-water ecosystem-based spatial management plan for Europe; Azores; Azores_Cavala_Plume; Azores_Famous_Plume; Azores_LuckyStrikeHole_Plume; Azores_MenezHom_Plume; Azores_Rainbow_Plume; Azores_Saldanha_Plume; Binary Object; Binary Object (File Size); Deep-sea; Deep-sea mining; Event label; hydrodynamic modelling; iAtlantic; Integrated Assessment of Atlantic Marine Ecosystems in Space and Time; Managing Impacts of Deep-seA reSource exploitation; Marine Ecosystem Restoration in Changing European Seas; MERCES; MIDAS; Model; MOHID; Sediment plumes; Spatial extent of impacts
    Type: Dataset
    Format: text/tab-separated-values, 6 data points
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  • 10
    Publication Date: 2024-04-17
    Description: We report the results of an aquaria-based experiment testing the effects of suspended particles generated during potential mining activities, on a common habitat-building coral species in the Azores, Dentomuricea aff. meteor. Coral fragments were maintained in 10-L aquaria and exposed to three experimental treatments for a period of four weeks at the DeepSeaLab aquaria facilities (Okeanos-University of the Azores): (1) control conditions (no added sediments); (2) suspended polymetallic sulphide (PMS) particles; (3) suspended quartz particles. Trace elements (Co, Cu, Mn) released from the resuspension of PMS particles to the water column in each aquaria were determined using passive sampling (DGT® Research Ltd) coupled with inductively coupled plasma mass spectrometry (ICPMS). DGT-holders were deployed in all aquaria and replaced every week (days 6, 13, 20, 27).
    Keywords: Aquarium number; ATLAS; A Trans-Atlantic assessment and deep-water ecosystem-based spatial management plan for Europe; Cnidaria; Cobalt; Condor Seamounts; Copper; enzyme activity; experiment; Experimental treatment; Experiment duration; gene expression; iAtlantic; ICP-MS; Inductively Coupled Plasma Mass Spectrometer (ICPMS); Inductively coupled plasma mass spectrometry; Integrated Assessment of Atlantic Marine Ecosystems in Space and Time; JPI Oceans - Ecological Aspects of Deep-Sea Mining; JPIO-MiningImpact; Managing Impacts of Deep-seA reSource exploitation; Manganese; metabolism; metal bioaccumulation; MIDAS; North Atlantic; octocorals; Sampling_Azores_Cold_Water_Octocoral
    Type: Dataset
    Format: text/tab-separated-values, 144 data points
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