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  • 1
    Publication Date: 2024-02-27
    Description: We report the results of an aquaria-based experiment testing the effects of suspended particles generated during potential mining activities, on a common habitat-building coral species in the Azores, Dentomuricea aff. meteor. Corals were collected from the summit of Condor Seamount (Azores, NE Atlantic) at depths between 185-210 m in August 2014. Coral fragments were maintained in 10-L aquaria and exposed to three experimental treatments for a period of four weeks at the DeepSeaLab aquaria facilities (Okeanos-University of the Azores): (1) control conditions (no added sediments); (2) suspended polymetallic sulphide (PMS) particles; (3) suspended quartz particles. PMS particles were obtained by grinding PMS inactive chimney rocks collected at the hydrothermal vent field Lucky Strike. Both particle types were delivered at a concentration of 25 mg L-1. The putative effects of PMS particles were evaluated through measurements of the coral physiological responses at the levels of the organism (oxygen consumption, ammonium excretion), tissue (bioaccumulation of metals) and cell (enzyme activity and gene expression).
    Keywords: ATLAS; A Trans-Atlantic assessment and deep-water ecosystem-based spatial management plan for Europe; Cnidaria; Condor Seamounts; enzyme activity; experiment; gene expression; iAtlantic; Integrated Assessment of Atlantic Marine Ecosystems in Space and Time; JPI Oceans - Ecological Aspects of Deep-Sea Mining; JPIO-MiningImpact; Managing Impacts of Deep-seA reSource exploitation; metabolism; metal bioaccumulation; MIDAS; North Atlantic; octocorals; Sampling_Azores_Cold_Water_Octocoral
    Type: Dataset
    Format: application/zip, 7 datasets
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  • 2
    Publication Date: 2024-02-27
    Description: We report the results of an aquaria-based experiment testing the effects of suspended particles generated during potential mining activities, on a common habitat-building coral species in the Azores, Dentomuricea aff. meteor. Coral fragments were maintained in 10-L aquaria and exposed to three experimental treatments for a period of four weeks at the DeepSeaLab aquaria facilities (Okeanos-University of the Azores): (1) control conditions (no added sediments); (2) suspended polymetallic sulphide (PMS) particles; (3) suspended quartz particles. The concentration of suspended PMS and quartz particles in each treatment was measured during an exposure period of 4 hours. Suspended particle concentrations were measured one minute after particle addition, and then at intervals of 5, 15, 30 minutes, 1 hour, 2 hours and 4 hours after particle addition in the PMS and quartz particle treatments and in control aquaria with no particle addition.
    Keywords: Aquarium number; ATLAS; A Trans-Atlantic assessment and deep-water ecosystem-based spatial management plan for Europe; Cnidaria; Condor Seamounts; enzyme activity; experiment; gene expression; iAtlantic; Integrated Assessment of Atlantic Marine Ecosystems in Space and Time; JPI Oceans - Ecological Aspects of Deep-Sea Mining; JPIO-MiningImpact; Managing Impacts of Deep-seA reSource exploitation; Measurement duration; metabolism; metal bioaccumulation; MIDAS; North Atlantic; octocorals; Sampling_Azores_Cold_Water_Octocoral; Suspended polymetallic sulfide; Suspended quartz
    Type: Dataset
    Format: text/tab-separated-values, 92 data points
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  • 3
    Publication Date: 2024-02-27
    Description: We report the results of an aquaria-based experiment testing the effects of suspended particles generated during potential mining activities, on a common habitat-building coral species in the Azores, Dentomuricea aff. meteor. Coral fragments were maintained in 10-L aquaria and exposed to three experimental treatments for a period of four weeks at the DeepSeaLab aquaria facilities (Okeanos-University of the Azores): (1) control conditions (no added sediments); (2) suspended polymetallic sulphide (PMS) particles; (3) suspended quartz particles. Seawater physical-chemical parameters were measured daily in each aquarium. Seawater salinity was measured with a S30 SevenEasy™ conductivity meter, pH and temperature with a glass electrode (Crison pH 25+), and oxygen with a Fibox4 (PreSens) with a Oxygen Dipping Probe DP-PSt3. Seawater samples for inorganic nutrient analyses were collected on times 0 (immediately before the start of the experiment), and once a week on days 6, 13, 20 and 27 of the experiment and determined using a colorimetric autoanalyzer Sanplus with segmented flow.
    Keywords: Ammonia+Ammonium; Aquarium number; ATLAS; A Trans-Atlantic assessment and deep-water ecosystem-based spatial management plan for Europe; Cnidaria; Colorimetric autoanalysis; Condor Seamounts; Conductivity meter, S30 SevenEasy; Dissolved oxygen, in water, interpolated; enzyme activity; experiment; Experimental treatment; Experiment duration; Fiber optic oxygen meter, Fibox 4, Presens, Germany; gene expression; Glass electrode (Crison pH 25+); iAtlantic; Integrated Assessment of Atlantic Marine Ecosystems in Space and Time; JPI Oceans - Ecological Aspects of Deep-Sea Mining; JPIO-MiningImpact; Managing Impacts of Deep-seA reSource exploitation; metabolism; metal bioaccumulation; MIDAS; Nitrate; North Atlantic; octocorals; pH; Salinity; Sampling_Azores_Cold_Water_Octocoral; Temperature, water
    Type: Dataset
    Format: text/tab-separated-values, 913 data points
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  • 4
    Publication Date: 2024-02-27
    Description: We report the results of an aquaria-based experiment testing the effects of suspended particles generated during potential mining activities, on a common habitat-building coral species in the Azores, Dentomuricea aff. meteor. Coral fragments were maintained in 10-L aquaria and exposed to three experimental treatments for a period of four weeks at the DeepSeaLab aquaria facilities (Okeanos-University of the Azores): (1) control conditions (no added sediments); (2) suspended polymetallic sulphide (PMS) particles; (3) suspended quartz particles. Trace elements in the tissues and skeletons of corals at the end of the experiment were quantified by a quadrupole ICPMS (Thermo Elemental, X-Series). The metal concentrations in coral tissues are given in microgram per gram of dry weight tissue (μg g-1; dw).
    Keywords: Aquarium number; ATLAS; A Trans-Atlantic assessment and deep-water ecosystem-based spatial management plan for Europe; Cnidaria; Cobalt; Condor Seamounts; Copper; enzyme activity; experiment; Experimental treatment; gene expression; iAtlantic; ICP-MS; Inductively coupled plasma mass spectrometry; Integrated Assessment of Atlantic Marine Ecosystems in Space and Time; JPI Oceans - Ecological Aspects of Deep-Sea Mining; JPIO-MiningImpact; Managing Impacts of Deep-seA reSource exploitation; Manganese; metabolism; metal bioaccumulation; MIDAS; North Atlantic; octocorals; Sample material; Sampling_Azores_Cold_Water_Octocoral; Specimen identification
    Type: Dataset
    Format: text/tab-separated-values, 182 data points
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  • 5
    Publication Date: 2024-02-27
    Description: We report the results of an aquaria-based experiment testing the effects of suspended particles generated during potential mining activities, on a common habitat-building coral species in the Azores, Dentomuricea aff. meteor. Coral fragments were maintained in 10-L aquaria and exposed to three experimental treatments for a period of four weeks at the DeepSeaLab aquaria facilities (Okeanos-University of the Azores): (1) control conditions (no added sediments); (2) suspended polymetallic sulphide (PMS) particles; (3) suspended quartz particles. Integrated measurements of coral respiration and ammonium release rates were carried out by closed-chamber incubation in cylindrical acrylic chambers on days 0, 13 and 27 of the experiment using an oxygen meter Fibox4 with a PSt3 sensor (PreSens, Germany). Coral respiration and excretion rates were normalized to the coral skeletal surface area.
    Keywords: Ammonium, excretion; Aquarium number; ATLAS; A Trans-Atlantic assessment and deep-water ecosystem-based spatial management plan for Europe; Cnidaria; Colorimetric autoanalysis; Condor Seamounts; enzyme activity; experiment; Experimental treatment; Experiment duration; Fiber optic oxygen meter, Fibox 4, Presens, Germany; gene expression; iAtlantic; Integrated Assessment of Atlantic Marine Ecosystems in Space and Time; Managing Impacts of Deep-seA reSource exploitation; metabolism; metal bioaccumulation; MIDAS; North Atlantic; octocorals; Respiration rate, oxygen; Sampling_Azores_Cold_Water_Octocoral; Specimen identification
    Type: Dataset
    Format: text/tab-separated-values, 233 data points
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  • 6
    Publication Date: 2024-02-27
    Description: We report the results of an aquaria-based experiment testing the effects of suspended particles generated during potential mining activities, on a common habitat-building coral species in the Azores, Dentomuricea aff. meteor. Coral fragments were maintained in 10-L aquaria and exposed to three experimental treatments for a period of four weeks at the DeepSeaLab aquaria facilities (Okeanos-University of the Azores): (1) control conditions (no added sediments); (2) suspended polymetallic sulphide (PMS) particles; (3) suspended quartz particles. Antioxidant stress related biomarkers (glutathione S−transferase, superoxide dismutase, catalase, malondialdehyde) in D. aff. meteor tissues were used to evaluate the degree of cellular stress induced by exposure to PMS and quartz particles at times 0 and 13 days in all treatments and from the control and quartz treatments also at time 27 days of the experiment.
    Keywords: Activity description; Aquarium number; ATLAS; A Trans-Atlantic assessment and deep-water ecosystem-based spatial management plan for Europe; Biomarker; Cnidaria; Condor Seamounts; enzyme activity; experiment; Experimental treatment; Experiment duration; gene expression; iAtlantic; Integrated Assessment of Atlantic Marine Ecosystems in Space and Time; JPI Oceans - Ecological Aspects of Deep-Sea Mining; JPIO-MiningImpact; Managing Impacts of Deep-seA reSource exploitation; metabolism; metal bioaccumulation; MIDAS; North Atlantic; octocorals; Sampling_Azores_Cold_Water_Octocoral; SPEC; Specimen identification; Spectrophotometer
    Type: Dataset
    Format: text/tab-separated-values, 702 data points
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  • 7
    Publication Date: 2024-02-27
    Description: We report the results of an aquaria-based experiment testing the effects of suspended particles generated during potential mining activities, on a common habitat-building coral species in the Azores, Dentomuricea aff. meteor. Coral fragments were maintained in 10-L aquaria and exposed to three experimental treatments for a period of four weeks at the DeepSeaLab aquaria facilities (Okeanos-University of the Azores): (1) control conditions (no added sediments); (2) suspended polymetallic sulphide (PMS) particles; (3) suspended quartz particles. Gene expression profiles in D. aff. meteor were used to evaluate the physiological pathways involved in the response to exposure to PMS and quartz particles. Coral fragments were collected from each treatment at times 0, 3, and 13 days and for the control and quartz treatments also at time 27 days. The study targeted genes involved in cellular stress and antioxidant reaction system (heat shock protein, superoxide dismutase, ferritin), cell structure/integrity (α-carbonic anhydrase, receptor-type protein tyrosine phosphatase) and immune responses (toll-like receptor, lysozyme, rel homology domain, ferritin).
    Keywords: ATLAS; A Trans-Atlantic assessment and deep-water ecosystem-based spatial management plan for Europe; Cnidaria; Condor Seamounts; Cycles; enzyme activity; experiment; Experimental treatment; Experiment duration; gene expression; Gene expression, fold change, relative; Gene expression, fold change, relative, standard error; Gene name; iAtlantic; Integrated Assessment of Atlantic Marine Ecosystems in Space and Time; JPI Oceans - Ecological Aspects of Deep-Sea Mining; JPIO-MiningImpact; Managing Impacts of Deep-seA reSource exploitation; metabolism; metal bioaccumulation; MIDAS; North Atlantic; octocorals; Real-Time PCR, CFX Connect™ Real-Time PCR Detection System (BioRad); Sampling_Azores_Cold_Water_Octocoral; Specimen identification
    Type: Dataset
    Format: text/tab-separated-values, 2488 data points
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  • 8
    Publication Date: 2024-03-15
    Description: Anthropogenic increased atmospheric CO2 concentrations will lead to a drop of 0.4 units of seawater pH and ocean warming up to 4.8°C by 2100. Contaminant's toxicity is known to increase under a climate change scenario. Rare earth elements (REE) are emerging contaminants, that until now have no regulation regarding maximum concentration and discharge into the environment and have become vital to new technologies such as electric and hybrid-electric vehicle batteries, wind turbine generators and low-energy lighting. Studies of REE, namely Lanthanum (La) and Gadolinium (Gd), bioaccumulation, elimination, and toxicity in a multi-stressor environment (e.g., warming and acidification) are lacking. Hence, we investigated the algae phytoremediation capacity, the ecotoxicological responses and total chlorophyll and carotenoid contents in Ulva rigida during 7 days of co-exposure to La or Gd (15 µg/L or 10 µg/L, respectively), and warming and acidification. Additionally, we assessed these metals elimination, after a 7-day phase. After one day of experiment La and Gd clearly showed accumulation/adsorption in different patterns, at future conditions. Unlikely for Gd, Warming and Acidification contributed to the lowest La accumulation, and increased elimination. Lanthanum and Gd triggered an adequate activation of the antioxidant defence system, by avoiding lipid damage. Nevertheless, REE exposure in a near-future scenario triggered an overproduction of ROS that requested an enhanced antioxidant response. Additionally, an increase in total chlorophyll and carotenoids could also indicate an unforeseen energy expense, as a response to a multi-stressor environment.
    Keywords: Alkalinity, total; Alkalinity, total, standard deviation; Aragonite saturation state; Benthos; Bicarbonate ion; Bottles or small containers/Aquaria (〈20 L); Calcite saturation state; Calculated using seacarb after Nisumaa et al. (2010); Carbonate ion; Carbonate system computation flag; Carbon dioxide; Carotenoids; Carotenoids, standard deviation; Catalase activity, per protein mass; Catalase activity, standard deviation; Chlorophyll total, per mass; Chlorophyll total, standard deviation; Chlorophyta; Experiment day; Fugacity of carbon dioxide (water) at sea surface temperature (wet air); Gadolinium; Gadolinium, maximum; Gadolinium, minimum; Glutathione S-transferase, activity per protein mass; Glutathione S-transferase, activity per protein mass, standard deviation; Inorganic toxins; Laboratory experiment; Laboratory strains; Lanthanum; Lanthanum, maximum; Lanthanum, minimum; Lipid peroxidation, per protein; Lipid peroxidation, standard deviation; Macroalgae; Not applicable; OA-ICC; Ocean Acidification International Coordination Centre; Other metabolic rates; Other studied parameter or process; Partial pressure of carbon dioxide, standard deviation; Partial pressure of carbon dioxide (water) at sea surface temperature (wet air); pH; pH, standard deviation; Plantae; Salinity; Salinity, standard deviation; Single species; Species, unique identification; Species, unique identification (Semantic URI); Species, unique identification (URI); Superoxide dismutase activity, inhibition, per protein mass; Superoxide dismutase activity, standard deviation; Temperature; Temperature, water; Temperature, water, standard deviation; Treatment; Type; Ulva rigida
    Type: Dataset
    Format: text/tab-separated-values, 2244 data points
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  • 9
    Publication Date: 2024-03-15
    Description: Lanthanum (La) is one of the most abundant emergent rare earth elements. Its release into the environment is enhanced by its use in various industrial applications. In the aquatic environment, emerging contaminants are one of the stressors with the ability to compromise the fitness of its inhabitants. Warming and acidification can also affect their resilience and are another consequence of the growing human footprint on the planet. However, from information gathered in the literature, a study on the effects of ocean warming, acidification, and their interaction with La was never carried out. To diminish this gap of knowledge, we explored the effects, combined and as single stressors, of ocean warming, acidification, and La (15 μg/L) accumulation and elimination on the surf clam (Spisula solida). Specimens were exposed for 7 days and depurated for an additional 7-day period. Furthermore, a robust set of membrane-associated, protein, and antioxidant enzymes and non-enzymatic biomarkers (LPO, HSP, Ub, SOD, CAT, GPx, GST, TAC) were quantified. Lanthanum was bioaccumulated after just one day of exposure, in both control and climate change scenarios. A 7-day depuration phase was insufficient to achieve control values and in a warming scenario, La elimination was more efficient. Biochemical response was triggered, as highlighted by enhanced SOD, CAT, GST, and TAC levels, however as lipoperoxidation was observed it was insufficient to detoxify La and avoid damage. The HSP was largely inhibited in La treatments combined with warming and acidification. Concomitantly, lipoperoxidation was highest in clams exposed to La, warming, and acidification combined. The results highlight the toxic effects of La on this bivalve species and its enhanced potential in a changing world.
    Keywords: Alkalinity, total; Alkalinity, total, standard deviation; Animalia; Aragonite saturation state; Benthic animals; Benthos; Bicarbonate ion; Bottles or small containers/Aquaria (〈20 L); Calcite saturation state; Calculated using seacarb after Nisumaa et al. (2010); Carbonate ion; Carbonate system computation flag; Carbon dioxide; Catalase activity, per protein mass; Catalase activity, standard deviation; Coast and continental shelf; Experiment day; Fugacity of carbon dioxide (water) at sea surface temperature (wet air); Glutathione S-transferase, activity per protein mass; Glutathione S-transferase, activity per protein mass, standard deviation; Heat shock protein, per protein mass; Heat shock protein, per protein mass, standard deviation; Inorganic toxins; Laboratory experiment; Lanthanum; Lanthanum, maximum; Lanthanum, minimum; Lipid peroxidation, per protein; Lipid peroxidation, standard deviation; Mollusca; North Atlantic; OA-ICC; Ocean Acidification International Coordination Centre; Other metabolic rates; Partial pressure of carbon dioxide, standard deviation; Partial pressure of carbon dioxide (water) at sea surface temperature (wet air); pH; pH, standard deviation; Salinity; Salinity, standard deviation; Single species; Species, unique identification; Species, unique identification (Semantic URI); Species, unique identification (URI); Spisula solida; Superoxide dismutase activity, inhibition, per protein mass; Superoxide dismutase activity, standard deviation; Temperate; Temperature; Temperature, water; Temperature, water, standard deviation; Total antioxidant capacity, per protein mass; Total antioxidant capacity, per protein mass, standard deviation; Total glutathione peroxidases activity, per protein mass; Total glutathione peroxidases activity, unit per protein mass, standard deviation; Treatment; Type; Ubiquitin; Ubiquitin, standard deviation
    Type: Dataset
    Format: text/tab-separated-values, 2432 data points
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  • 10
    Publication Date: 2024-03-15
    Description: Humans have exhaustively combusted fossil fuels, and released pollutants into the environment, at continuously faster rates resulting in global average temperature increase and seawater pH decrease. Climate change is forecasted to exacerbate the effects of pollutants such as the emergent rare earth elements. Therefore, the objective of this study was to assess the combined effects of rising temperature (delta = + 4 °C) and decreasing pH (delta = − 0.4 pH units) on the bioaccumulation and elimination of gadolinium (Gd) in the bioindicator bivalve species Spisula solida (Surf clam). We exposed surf clams to 10 µg/L of GdCl3 for seven days, under warming, acidification, and their combination, followed by a depuration phase lasting for another 7 days and investigated the Gd bioaccumulation and oxidative stress-related responses after 1, 3 and 7 days of exposure and the elimination phase. Gadolinium accumulated after just one day with values reaching the highest after 7 days. Gadolinium was not eliminated after 7 days, and elimination is further hampered under climate change scenarios. Warming and acidification, and their interaction did not significantly impact Gd concentration. However, there was a significant interaction on clam's biochemical response. The augmented total antioxidant capacity and lipid peroxidation values show that the significant impacts of Gd on the oxidative stress response are enhanced under warming while the increased superoxide dismutase and catalase values demonstrate the combined impact of Gd, warming & acidification. Ultimately, lipid damage was greater in clams exposed to warming & Gd, which emphasizes the enhanced toxic effects of Gd in a changing ocean.
    Keywords: Alkalinity, total; Alkalinity, total, standard deviation; Animalia; Aragonite saturation state; Benthic animals; Benthos; Bicarbonate ion; Bottles or small containers/Aquaria (〈20 L); Cadmium; Cadmium, error; Calcite saturation state; Calculated using CO2SYS; Calculated using seacarb after Nisumaa et al. (2010); Carbonate ion; Carbonate system computation flag; Carbon dioxide; Catalase activity, per protein mass; Catalase activity, standard deviation; Coast and continental shelf; Fugacity of carbon dioxide (water) at sea surface temperature (wet air); Glutathione S-transferase, activity per protein mass; Glutathione S-transferase, activity per protein mass, standard deviation; Heat shock protein, per protein mass; Heat shock protein, per protein mass, standard deviation; Individuals; Inorganic toxins; Laboratory experiment; Lipid peroxidation, per protein; Lipid peroxidation, standard deviation; Mollusca; North Atlantic; OA-ICC; Ocean Acidification International Coordination Centre; Other metabolic rates; Partial pressure of carbon dioxide, standard deviation; Partial pressure of carbon dioxide (water) at sea surface temperature (wet air); pH; pH, standard deviation; Potentiometric; Potentiometric titration; Salinity; Salinity, standard deviation; Sampling date; Single species; Species, unique identification; Species, unique identification (Semantic URI); Species, unique identification (URI); Spisula solida; Superoxide dismutase activity, inhibition, per protein mass; Superoxide dismutase activity, standard deviation; Temperate; Temperature; Temperature, water; Temperature, water, standard deviation; Total antioxidant capacity, per protein mass; Total antioxidant capacity, per protein mass, standard deviation; Total glutathione peroxidases activity, per protein mass; Total glutathione peroxidases activity, unit per protein mass, standard deviation; Treatment; Type; Ubiquitin; Ubiquitin, standard deviation
    Type: Dataset
    Format: text/tab-separated-values, 2472 data points
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