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  • 1
    Publication Date: 2012-07-09
    Description: Metaproteogenomic analysis of microbial communities in the phyllosphere and rhizosphere of rice The ISME Journal 6, 1378 (July 2012). doi:10.1038/ismej.2011.192 Authors: Claudia Knief, Nathanaël Delmotte, Samuel Chaffron, Manuel Stark, Gerd Innerebner, Reiner Wassmann, Christian von Mering & Julia A Vorholt
    Keywords: metaproteogenomicsphyllosphererhizosphereOryza sativamicrobial communityrice
    Print ISSN: 1751-7362
    Electronic ISSN: 1751-7370
    Topics: Biology
    Location Call Number Expected Availability
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  • 2
    Publication Date: 2019
    Description: Abstract Predicting responses of plankton to variations in essential nutrients is hampered by limited in situ measurements, a poor understanding of community composition, and the lack of reference gene catalogs for key taxa. Iron is a key driver of plankton dynamics and, therefore, of global biogeochemical cycles and climate. To assess the impact of iron availability on plankton communities we explored the comprehensive bio‐oceanographic and ‐omics datasets from Tara Oceans in the context of the iron products from two state‐of‐the‐art global scale biogeochemical models. We obtained novel information about adaptation and acclimation towards iron in a range of phytoplankton, including picocyanobacteria and diatoms, and identified whole sub‐communities co‐varying with iron. Many of the observed global patterns were recapitulated in the Marquesas archipelago, where frequent plankton blooms are believed to be caused by natural iron fertilization, although they are not captured in large scale biogeochemical models. This work provides a proof‐of‐concept that integrative analyses, spanning from genes to ecosystems and viruses to zooplankton, can disentangle the complexity of plankton communities and can lead to more accurate formulations of resource bioavailability in biogeochemical models, thus improving our understanding of plankton resilience in a changing environment.
    Print ISSN: 0886-6236
    Electronic ISSN: 1944-9224
    Topics: Biology , Chemistry and Pharmacology , Geography , Geosciences , Physics
    Published by Wiley on behalf of American Geophysical Union (AGU).
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  • 3
    Publication Date: 2016-04-28
    Description: Plankton networks driving carbon export in the oligotrophic ocean Nature 532, 7600 (2016). doi:10.1038/nature16942 Authors: Lionel Guidi, Samuel Chaffron, Lucie Bittner, Damien Eveillard, Abdelhalim Larhlimi, Simon Roux, Youssef Darzi, Stephane Audic, Léo Berline, Jennifer R. Brum, Luis Pedro Coelho, Julio Cesar Ignacio Espinoza, Shruti Malviya, Shinichi Sunagawa, Céline Dimier, Stefanie Kandels-Lewis, Marc Picheral, Julie Poulain, Sarah Searson, Lars Stemmann, Fabrice Not, Pascal Hingamp, Sabrina Speich, Mick Follows, Lee Karp-Boss, Emmanuel Boss, Hiroyuki Ogata, Stephane Pesant, Jean Weissenbach, Patrick Wincker, Silvia G. Acinas, Peer Bork, Colomban de Vargas, Daniele Iudicone, Matthew B. Sullivan, Jeroen Raes, Eric Karsenti, Chris Bowler & Gabriel Gorsky The biological carbon pump is the process by which CO2 is transformed to organic carbon via photosynthesis, exported through sinking particles, and finally sequestered in the deep ocean. While the intensity of the pump correlates with plankton community composition, the underlying ecosystem structure
    Print ISSN: 0028-0836
    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
    Published by Springer Nature
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  • 4
    Publication Date: 2024-03-28
    Description: The Arctic Ocean (AO) is being rapidly transformed by global warming, but its biodiversity remains understudied for many planktonic organisms, in particular for unicellular eukaryotes that play pivotal roles in marine food webs and biogeochemical cycles. The aim of this study was to characterize the biogeographic ranges of species that comprise the contemporary pool of unicellular eukaryotes in the AO as a first step toward understanding mechanisms that structure these communities and identifying potential target species for monitoring. Leveraging the Tara Oceans DNA metabarcoding data, we mapped the global distributions of operational taxonomic units (OTUs) found on Arctic shelves into five biogeographic categories, identified biogeographic indicators, and inferred the degree to which AO communities of unicellular eukaryotes share members with assemblages from lower latitudes. Arctic/Polar indicator OTUs, as well as some globally ubiquitous OTUs, dominated the detection and abundance of DNA reads in the Arctic samples. OTUs detected only in Arctic samples (Arctic-exclusives) showed restricted distribution with relatively low abundances, accounting for 10–16% of the total Arctic OTU pool. OTUs with high abundances in tropical and/or temperate latitudes (non-Polar indicators) were also found in the AO but mainly at its periphery. We observed a large change in community taxonomic composition across the Atlantic-Arctic continuum, supporting the idea that advection and environmental filtering are important processes that shape plankton assemblages in the AO. Altogether, this study highlights the connectivity between the AO and other oceans, and provides a framework for monitoring and assessing future changes in this vulnerable ecosystem.
    Keywords: Marine protists ; Unicellular ; Phytoplankton ; Global change ; Advection ; Environmental filtering
    Repository Name: National Museum of Natural History, Netherlands
    Type: info:eu-repo/semantics/article
    Format: application/pdf
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  • 5
    Publication Date: 2024-01-06
    Description: The present data set provides contextual environmental data for samples from the Tara Oceans Expedition (2009-2013) that were selected for publication in a special issue of the SCIENCE journal (see related references below). The data set provides calculated averages of mesaurements made at the sampling location and depth, calculated averages from climatologies (AMODIS, VGPM) and satellite products.
    Keywords: [day] [deep chlorophyll maximum layer (ENVO:010003; [day] [epipelagic mixed layer (ENVO:01000061)]; [day] [epipelagic mixed layer (ENVO:01000061)] [pr; [day] [mesopelagic zone (ENVO:00000213)]; [day] [mesopelagic zone (ENVO:00000213)] [also lab; [day] [surface water layer (ENVO:00002042)]; [day] [surface water layer (ENVO:00002042)] [also; [day] [surface water layer (ENVO:00002042)] [proti; [day] [water layer with no specific feature]; [HVP-PUMP]; [NET-BONGO-180]+[SIEVE-2000]; [NET-DOUBLE-20]+[SIEVE-180]; [NET-SINGLE-5]+[SIEVE-20]; [night] [deep chlorophyll maximum layer (ENVO:0100; [night] [surface water layer (ENVO:00002042)] [pro; [RVSS]; Algiers to Barcelona, Stations: TARA_008-011; Angular scattering coefficient, 470 nm; Ascencion to Rio de Janiero, Stations: TARA_072-076; Backscattering coefficient of particles, 470 nm; Beam attenuation coefficient of particles; Bermuda to Horta, Stations: TARA_148-151; Beyrouth to Alexandria, Stations: TARA_029-030; Buenos Aires to Ushuaia, Stations: TARA_079b-083; Calculated (d'Ovidio et al. 2010); calculated from AMODIS products; calculated from in situ sensor data, calibrated using factory settings; calculated from in situ sensor data, calibrated using water samples; calculated from in situ sensor data, calibrated using WOA09 climatology; calculated from measurements on available water samples; calculated from VGPM products; CapeTown to Ascencion, Stations: TARA_067-071; Chlorophyll a; Conductivity; Density, sigma-theta (0); DEPTH, water; Depth of chlorophyll maximum; Depth of maximum Brunt Väisälä frequency; Depth of maximum oxygen concentration; Depth of minimum oxygen concentration; Depth of nitracline; Dubrovnik to Athens, Stations: TARA_025-026; Easter Island to Guayaquil, Stations: TARA_098-102; Environmental feature; Event label; Fluorescence, colored dissolved organic matter; Fondation Tara Expeditions; FondTara; Geostrophic velocity, latitudinal; Geostrophic velocity, longitudinal; Guayaquil to Totegegie, Stations: TARA_110-113; High Volume Peristaltic Pump; Honolulu to San Diego, Stations: TARA_131-135; Horta to La Coruna, Stations: TARA_152-154; Jeddah to Djibouti, Stations: TARA_034; Lisbon to Tangier, Stations: TARA_003-004; Malé to Saint Brandon, Stations: TARA_044-049; Mamoudzou to Cape Town, Stations: TARA_055-066; Maximum Lyapunov exponent; Mixed layer depth; Moon phase, nominal; Moon phase, proportion; Mumbai to Malé, Stations: TARA_041-043; Muscat to Mumbai, Stations: TARA_036-040; Naples to Valetta, Stations: TARA_015-017; Net primary production of carbon; New-York City to Bermuda, Stations: TARA_146-147; Nitrate; Nitrate and Nitrite; Nitrite; Okubo-Weiss parameter; Optical backscattering coefficient, 470 nm; Optical beam attenuation coefficient, 660 nm; Oxygen; Panama City to Savannah, Stations: TARA_141-143; Papeete to Honolulu, Stations: TARA_126-130; Phosphate; Plankton net+sieve, type=Bongo, mesh(µm)=180, mouth(m^2)=0.258319, length(m)=3; Plankton net+sieve, type=Double, mesh(µm)=20, mouth(m^2)=0.192442, length(m)=2.5; Plankton net+sieve, type=single, mesh(µm)=5, mouth(m^2)=0.196349, length(m)=2.5; Puerto Ayora to Guayaquil, Stations: TARA_107-109; Radiation, photosynthetically active per day; Residence time; Rio de Janiero to Buenos Aires, Stations: TARA_077-079a; Rosette Vertical Sampling System; Saint Denis to Antseranana, Stations: TARA_052; Salinity; Sample ID; San Diego to Panama City, Stations: TARA_136-140; Savannah to New-York City, Stations: TARA_144-145; Season; Sea surface temperature gradient, horizontal; Sharm El Sheikh to Jeddah, Stations: TARA_031-033; Silicate; Station label; Sunshine duration; SV Tara; Taiohae harbour to Papeete, Stations: TARA_122-125; Tangier to Algiers, Stations: TARA_005-007; TARA_20090913Z; TARA_20090915T1130Z_004_EVENT_PUMP; TARA_20090915T1500Z_004_EVENT_NET; TARA_20090915T1600Z_004_EVENT_NET; TARA_20090915T1800Z_004_EVENT_PUMP; TARA_20090919Z; TARA_20090923T1250Z_007_EVENT_PUMP; TARA_20090923T1439Z_007_EVENT_NET; TARA_20090923T1608Z_007_EVENT_PUMP; TARA_20090923T1754Z_007_EVENT_NET; TARA_20090923T1811Z_007_EVENT_NET; TARA_20090923T1832Z_007_EVENT_NET; TARA_20090926Z; TARA_20090928T1218Z_009_EVENT_PUMP; TARA_20090928T1508Z_009_EVENT_NET; TARA_20090928T1522Z_009_EVENT_NET; TARA_20090928T1659Z_009_EVENT_PUMP; TARA_20091004T0830Z_011_EVENT_PUMP; TARA_20091004T1416Z_011_EVENT_NET; TARA_20091004T1530Z_011_EVENT_NET; TARA_20091025Z; TARA_20091027T0822Z_016_EVENT_PUMP; TARA_20091027T1350Z_016_EVENT_PUMP; TARA_20091031Z; TARA_20091102T0813Z_018_EVENT_PUMP; TARA_20091102T1031Z_018_EVENT_NET; TARA_20091102T1125Z_018_EVENT_NET; TARA_20091102T1407Z_018_EVENT_PUMP; TARA_20091102T1415Z_018_EVENT_NET; TARA_20091102T1430Z_018_EVENT_NET; TARA_20091111Z; TARA_20091112T1220Z_020_EVENT_NET; TARA_20091112T1409Z_020_EVENT_PUMP; TARA_20091112T1744Z_020_EVENT_NET; TARA_20091116T0816Z_022_EVENT_PUMP; TARA_20091116T0937Z_022_EVENT_NET; TARA_20091116T1340Z_022_EVENT_NET; TARA_20091116T1453Z_022_EVENT_PUMP; TARA_20091116T1703Z_022_EVENT_NET; TARA_20091116T1953Z_022_EVENT_NET; TARA_20091118T0841Z_023_EVENT_PUMP; TARA_20091118T1017Z_023_EVENT_NET; TARA_20091118T1240Z_023_EVENT_PUMP; TARA_20091118T1256Z_023_EVENT_NET; TARA_20091118T1352Z_023_EVENT_NET; TARA_20091118T1632Z_023_EVENT_NET; TARA_20091121T1110Z_024_EVENT_PUMP; TARA_20091121T1135Z_024_EVENT_NET; TARA_20091121T1319Z_024_EVENT_NET; TARA_20091122Z; TARA_20091123T0912Z_025_EVENT_PUMP; TARA_20091123T0914Z_025_EVENT_NET; TARA_20091123T1102Z_025_EVENT_NET; TARA_20091123T1308Z_025_EVENT_NET; TARA_20091123T1352Z_025_EVENT_PUMP; TARA_20091123T1620Z_025_EVENT_NET; TARA_20091124T0740Z_026_EVENT_PUMP; TARA_20091124T0744Z_026_EVENT_NET; TARA_20091124T0945Z_026_EVENT_NET; TARA_20091214Z; TARA_20091215T1041Z_030_EVENT_PUMP; TARA_20091215T1113Z_030_EVENT_NET; TARA_20091215T1244Z_030_EVENT_NET; TARA_20091215T1305Z_030_EVENT_NET; TARA_20091215T1512Z_030_Combined-EVENTS_CAST; TARA_20100108Z; TARA_20100109T0715Z_031_EVENT_PUMP; TARA_20100109T0737Z_031_EVENT_NET; TARA_20100109T0925Z_031_EVENT_NET; TARA_20100111T0721Z_032_EVENT_NET; TARA_20100111T0721Z_032_EVENT_PUMP; TARA_20100111T0837Z_032_EVENT_NET; TARA_20100111T1228Z_032_EVENT_NET; TARA_20100111T1415Z_032_EVENT_NET; TARA_20100111T1417Z_032_EVENT_PUMP; TARA_20100113T0716Z_033_EVENT_PUMP; TARA_20100113T0720Z_033_EVENT_NET; TARA_20100113T1010Z_033_EVENT_NET; TARA_20100113T1102Z_033_EVENT_CAST; TARA_20100118Z; TARA_20100120T0427Z_034_EVENT_PUMP; TARA_20100120T0445Z_034_EVENT_NET; TARA_20100120T0801Z_034_EVENT_NET; TARA_20100120T1040Z_034_EVENT_NET; TARA_20100120T1150Z_034_EVENT_PUMP; TARA_20100120T1415Z_034_EVENT_NET; TARA_20100309Z; TARA_20100312T0606Z_036_EVENT_NET; TARA_20100312T0606Z_036_EVENT_PUMP; TARA_20100312T1024Z_036_EVENT_NET; TARA_20100312T1105Z_036_EVENT_NET; TARA_20100312T1120Z_036_EVENT_NET; TARA_20100312T1223Z_036_EVENT_PUMP; TARA_20100313T0507Z_037_Combined-EVENTS_CAST; TARA_20100315T0335Z_038_EVENT_PUMP; TARA_20100315T0337Z_038_EVENT_NET; TARA_20100315T0531Z_038_EVENT_NET; TARA_20100315T1002Z_038_EVENT_NET; TARA_20100315T1020Z_038_EVENT_NET; TARA_20100315T1118Z_038_EVENT_PUMP; TARA_20100316T0614Z_038_Combined-EVENTS_CAST; TARA_20100318T0427Z_039_EVENT_PUMP; TARA_20100318T0505Z_039_EVENT_NET; TARA_20100318T0820Z_039_EVENT_NET; TARA_20100318T0940Z_039_EVENT_NET; TARA_20100318T1041Z_039_EVENT_NET; TARA_20100318T1133Z_039_EVENT_PUMP; TARA_20100320T0817Z_039_Combined-EVENTS_CAST; TARA_20100327Z; TARA_20100330T0245Z_041_EVENT_NET; TARA_20100330T0247Z_041_EVENT_PUMP; TARA_20100330T0532Z_041_EVENT_NET; TARA_20100330T0917Z_041_EVENT_NET; TARA_20100330T0936Z_041_EVENT_NET; TARA_20100330T1056Z_041_EVENT_PUMP; TARA_20100404T0247Z_042_EVENT_PUMP; TARA_20100404T0304Z_042_EVENT_NET; TARA_20100404T0527Z_042_EVENT_NET; TARA_20100404T0828Z_042_EVENT_NET; TARA_20100404T0848Z_042_EVENT_NET; TARA_20100404T0950Z_042_EVENT_PUMP; TARA_20100410Z; TARA_20100411T0354Z_044_EVENT_PUMP; TARA_20100413T0246Z_045_EVENT_NET; TARA_20100413T0321Z_045_EVENT_PUMP;
    Type: Dataset
    Format: text/tab-separated-values, 24718 data points
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  • 6
    Publication Date: 2024-01-06
    Description: The present data set provides contextual data for samples from the Tara Oceans Expedition (2009-2013) that were selected for publication in a special issue of the SCIENCE journal (see related references below). Contextual data include various diversity indexes calculated for the sampling location using satellite and model climatologies (Darwin project, Physat) and results from the sequencing of Tara Oceans samples.
    Keywords: [day] [deep chlorophyll maximum layer (ENVO:010003; [day] [epipelagic mixed layer (ENVO:01000061)]; [day] [epipelagic mixed layer (ENVO:01000061)] [pr; [day] [mesopelagic zone (ENVO:00000213)]; [day] [mesopelagic zone (ENVO:00000213)] [also lab; [day] [surface water layer (ENVO:00002042)]; [day] [surface water layer (ENVO:00002042)] [also; [day] [surface water layer (ENVO:00002042)] [proti; [day] [water layer with no specific feature]; [HVP-PUMP]; [NET-BONGO-180]+[SIEVE-2000]; [NET-DOUBLE-20]+[SIEVE-180]; [NET-SINGLE-5]+[SIEVE-20]; [night] [deep chlorophyll maximum layer (ENVO:0100; [night] [surface water layer (ENVO:00002042)] [pro; [RVSS]; Algiers to Barcelona, Stations: TARA_008-011; Ascencion to Rio de Janiero, Stations: TARA_072-076; Bermuda to Horta, Stations: TARA_148-151; Beyrouth to Alexandria, Stations: TARA_029-030; Buenos Aires to Ushuaia, Stations: TARA_079b-083; calculated using the ACE index; calculated using the Chaos index; calculated using the Faith index; calculated using the Shannon index; calculated using the Shannon index from PHYSAT data products; calculated using the Shannon index from the Darwin model; CapeTown to Ascencion, Stations: TARA_067-071; DEPTH, water; Dubrovnik to Athens, Stations: TARA_025-026; Easter Island to Guayaquil, Stations: TARA_098-102; Environmental feature; Event label; Fondation Tara Expeditions; FondTara; Functional diversity; Functional evenness; Functional richness; Guayaquil to Totegegie, Stations: TARA_110-113; High Volume Peristaltic Pump; Honolulu to San Diego, Stations: TARA_131-135; Horta to La Coruna, Stations: TARA_152-154; Jeddah to Djibouti, Stations: TARA_034; Lisbon to Tangier, Stations: TARA_003-004; Malé to Saint Brandon, Stations: TARA_044-049; Mamoudzou to Cape Town, Stations: TARA_055-066; Mumbai to Malé, Stations: TARA_041-043; Muscat to Mumbai, Stations: TARA_036-040; Naples to Valetta, Stations: TARA_015-017; New-York City to Bermuda, Stations: TARA_146-147; Panama City to Savannah, Stations: TARA_141-143; Papeete to Honolulu, Stations: TARA_126-130; Phylogenetic diversity; Plankton net+sieve, type=Bongo, mesh(µm)=180, mouth(m^2)=0.258319, length(m)=3; Plankton net+sieve, type=Double, mesh(µm)=20, mouth(m^2)=0.192442, length(m)=2.5; Plankton net+sieve, type=single, mesh(µm)=5, mouth(m^2)=0.196349, length(m)=2.5; Puerto Ayora to Guayaquil, Stations: TARA_107-109; Rio de Janiero to Buenos Aires, Stations: TARA_077-079a; Rosette Vertical Sampling System; Saint Denis to Antseranana, Stations: TARA_052; Sample ID; San Diego to Panama City, Stations: TARA_136-140; Savannah to New-York City, Stations: TARA_144-145; Sharm El Sheikh to Jeddah, Stations: TARA_031-033; Species diversity; Species richness; Station label; SV Tara; Taiohae harbour to Papeete, Stations: TARA_122-125; Tangier to Algiers, Stations: TARA_005-007; TARA_20090913Z; TARA_20090915T1130Z_004_EVENT_PUMP; TARA_20090915T1500Z_004_EVENT_NET; TARA_20090915T1600Z_004_EVENT_NET; TARA_20090915T1800Z_004_EVENT_PUMP; TARA_20090919Z; TARA_20090923T1250Z_007_EVENT_PUMP; TARA_20090923T1439Z_007_EVENT_NET; TARA_20090923T1608Z_007_EVENT_PUMP; TARA_20090923T1754Z_007_EVENT_NET; TARA_20090923T1811Z_007_EVENT_NET; TARA_20090923T1832Z_007_EVENT_NET; TARA_20090926Z; TARA_20090928T1218Z_009_EVENT_PUMP; TARA_20090928T1508Z_009_EVENT_NET; TARA_20090928T1522Z_009_EVENT_NET; TARA_20090928T1659Z_009_EVENT_PUMP; TARA_20091004T0830Z_011_EVENT_PUMP; TARA_20091004T1416Z_011_EVENT_NET; TARA_20091004T1530Z_011_EVENT_NET; TARA_20091025Z; TARA_20091027T0822Z_016_EVENT_PUMP; TARA_20091027T1350Z_016_EVENT_PUMP; TARA_20091031Z; TARA_20091102T0813Z_018_EVENT_PUMP; TARA_20091102T1031Z_018_EVENT_NET; TARA_20091102T1125Z_018_EVENT_NET; TARA_20091102T1407Z_018_EVENT_PUMP; TARA_20091102T1415Z_018_EVENT_NET; TARA_20091102T1430Z_018_EVENT_NET; TARA_20091111Z; TARA_20091112T1220Z_020_EVENT_NET; TARA_20091112T1409Z_020_EVENT_PUMP; TARA_20091112T1744Z_020_EVENT_NET; TARA_20091116T0816Z_022_EVENT_PUMP; TARA_20091116T0937Z_022_EVENT_NET; TARA_20091116T1340Z_022_EVENT_NET; TARA_20091116T1453Z_022_EVENT_PUMP; TARA_20091116T1703Z_022_EVENT_NET; TARA_20091116T1953Z_022_EVENT_NET; TARA_20091118T0841Z_023_EVENT_PUMP; TARA_20091118T1017Z_023_EVENT_NET; TARA_20091118T1240Z_023_EVENT_PUMP; TARA_20091118T1256Z_023_EVENT_NET; TARA_20091118T1352Z_023_EVENT_NET; TARA_20091118T1632Z_023_EVENT_NET; TARA_20091121T1110Z_024_EVENT_PUMP; TARA_20091121T1135Z_024_EVENT_NET; TARA_20091121T1319Z_024_EVENT_NET; TARA_20091122Z; TARA_20091123T0912Z_025_EVENT_PUMP; TARA_20091123T0914Z_025_EVENT_NET; TARA_20091123T1102Z_025_EVENT_NET; TARA_20091123T1308Z_025_EVENT_NET; TARA_20091123T1352Z_025_EVENT_PUMP; TARA_20091123T1620Z_025_EVENT_NET; TARA_20091124T0740Z_026_EVENT_PUMP; TARA_20091124T0744Z_026_EVENT_NET; TARA_20091124T0945Z_026_EVENT_NET; TARA_20091214Z; TARA_20091215T1041Z_030_EVENT_PUMP; TARA_20091215T1113Z_030_EVENT_NET; TARA_20091215T1244Z_030_EVENT_NET; TARA_20091215T1305Z_030_EVENT_NET; TARA_20091215T1512Z_030_Combined-EVENTS_CAST; TARA_20100108Z; TARA_20100109T0715Z_031_EVENT_PUMP; TARA_20100109T0737Z_031_EVENT_NET; TARA_20100109T0925Z_031_EVENT_NET; TARA_20100111T0721Z_032_EVENT_NET; TARA_20100111T0721Z_032_EVENT_PUMP; TARA_20100111T0837Z_032_EVENT_NET; TARA_20100111T1228Z_032_EVENT_NET; TARA_20100111T1415Z_032_EVENT_NET; TARA_20100111T1417Z_032_EVENT_PUMP; TARA_20100113T0716Z_033_EVENT_PUMP; TARA_20100113T0720Z_033_EVENT_NET; TARA_20100113T1010Z_033_EVENT_NET; TARA_20100113T1102Z_033_EVENT_CAST; TARA_20100118Z; TARA_20100120T0427Z_034_EVENT_PUMP; TARA_20100120T0445Z_034_EVENT_NET; TARA_20100120T0801Z_034_EVENT_NET; TARA_20100120T1040Z_034_EVENT_NET; TARA_20100120T1150Z_034_EVENT_PUMP; TARA_20100120T1415Z_034_EVENT_NET; TARA_20100309Z; TARA_20100312T0606Z_036_EVENT_NET; TARA_20100312T0606Z_036_EVENT_PUMP; TARA_20100312T1024Z_036_EVENT_NET; TARA_20100312T1105Z_036_EVENT_NET; TARA_20100312T1120Z_036_EVENT_NET; TARA_20100312T1223Z_036_EVENT_PUMP; TARA_20100313T0507Z_037_Combined-EVENTS_CAST; TARA_20100315T0335Z_038_EVENT_PUMP; TARA_20100315T0337Z_038_EVENT_NET; TARA_20100315T0531Z_038_EVENT_NET; TARA_20100315T1002Z_038_EVENT_NET; TARA_20100315T1020Z_038_EVENT_NET; TARA_20100315T1118Z_038_EVENT_PUMP; TARA_20100316T0614Z_038_Combined-EVENTS_CAST; TARA_20100318T0427Z_039_EVENT_PUMP; TARA_20100318T0505Z_039_EVENT_NET; TARA_20100318T0820Z_039_EVENT_NET; TARA_20100318T0940Z_039_EVENT_NET; TARA_20100318T1041Z_039_EVENT_NET; TARA_20100318T1133Z_039_EVENT_PUMP; TARA_20100320T0817Z_039_Combined-EVENTS_CAST; TARA_20100327Z; TARA_20100330T0245Z_041_EVENT_NET; TARA_20100330T0247Z_041_EVENT_PUMP; TARA_20100330T0532Z_041_EVENT_NET; TARA_20100330T0917Z_041_EVENT_NET; TARA_20100330T0936Z_041_EVENT_NET; TARA_20100330T1056Z_041_EVENT_PUMP; TARA_20100404T0247Z_042_EVENT_PUMP; TARA_20100404T0304Z_042_EVENT_NET; TARA_20100404T0527Z_042_EVENT_NET; TARA_20100404T0828Z_042_EVENT_NET; TARA_20100404T0848Z_042_EVENT_NET; TARA_20100404T0950Z_042_EVENT_PUMP; TARA_20100410Z; TARA_20100411T0354Z_044_EVENT_PUMP; TARA_20100413T0246Z_045_EVENT_NET; TARA_20100413T0321Z_045_EVENT_PUMP; TARA_20100413T1115Z_045_EVENT_NET; TARA_20100415T0201Z_046_EVENT_PUMP; TARA_20100419T0756Z_048_EVENT_PUMP; TARA_20100419T1147Z_048_EVENT_NET; TARA_20100515Z; TARA_20100517T0410Z_052_EVENT_NET; TARA_20100517T0410Z_052_EVENT_PUMP; TARA_20100517T0545Z_052_EVENT_NET; TARA_20100517T0648Z_052_EVENT_NET; TARA_20100517T1005Z_052_EVENT_NET; TARA_20100517T1050Z_052_EVENT_NET; TARA_20100517T1142Z_052_EVENT_PUMP; TARA_20100624Z; TARA_20100626T0705Z_056_EVENT_PUMP; TARA_20100626T0713Z_056_EVENT_CAST; TARA_20100627T1205Z_057_EVENT_PUMP; TARA_20100629T1500Z_058_EVENT_PUMP; TARA_20100703T0809Z_062_EVENT_PUMP; TARA_20100707T0448Z_064_EVENT_PUMP; TARA_20100707T0517Z_064_EVENT_NET; TARA_20100707T0714Z_064_EVENT_NET; TARA_20100707T0753Z_064_EVENT_NET; TARA_20100707T0815Z_064_EVENT_NET; TARA_20100707T1049Z_064_EVENT_NET; TARA_20100707T1217Z_064_Combined-EVENTS_CAST; TARA_20100708T0621Z_064_EVENT_PUMP; TARA_20100712T0559Z_065_EVENT_PUMP;
    Type: Dataset
    Format: text/tab-separated-values, 6231 data points
    Location Call Number Expected Availability
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  • 7
    Publication Date: 2024-03-01
    Keywords: [BUCKET-10]; [CABLE]+[sbe19]+[NISKIN]; [CABLE]+[sbe9S]+[NISKIN]; [CSSS]; [day/night] [deep chlorophyll maximum layer (ENVO:; [day/night] [surface water layer (ENVO:00002042)]; [day/night] [water layer with no specific feature]; [day]; [day] [200 m]; [day] [deep chlorophyll maximum layer (ENVO:010003; [day] [epipelagic mixed layer (ENVO:01000061)]; [day] [epipelagic mixed layer (ENVO:01000061)] [pr; [day] [integrated]; [day] [integrated] [protist sampling]; [day] [mesopelagic zone (ENVO:00000213)]; [day] [mesopelagic zone (ENVO:00000213)] [also lab; [day] [near bottom]; [day] [surface water layer (ENVO:00002042)]; [day] [surface water layer (ENVO:00002042)] [also; [day] [surface water layer (ENVO:00002042)] [Ancho; [day] [surface water layer (ENVO:00002042)] [Barce; [day] [surface water layer (ENVO:00002042)] [befor; [day] [surface water layer (ENVO:00002042)] [betwe; [day] [surface water layer (ENVO:00002042)] [Europ; [day] [surface water layer (ENVO:00002042)] [In vi; [day] [surface water layer (ENVO:00002042)] [Juan; [day] [surface water layer (ENVO:00002042)] [near; [day] [surface water layer (ENVO:00002042)] [neust; [day] [surface water layer (ENVO:00002042)] [NOT n; [day] [surface water layer (ENVO:00002042)] [Patag; [day] [surface water layer (ENVO:00002042)] [plast; [day] [surface water layer (ENVO:00002042)] [proti; [day] [surface water layer (ENVO:00002042)] [TARA_; [day] [water layer with no specific feature]; [day] [water layer with no specific feature] [also; [day] [water layer with no specific feature] [Barc; [day] [water layer with no specific feature] [imag; [day] [water layer with no specific feature] [Lago; [day] [water layer with no specific feature] [merc; [day] [water layer with no specific feature] [near; [day] [water layer with no specific feature] [NOT; [DECK-PUMP]; [FSWS]; [HVP-PUMP]; [near station 95]; [NET-BONGO-180]; [NET-BONGO-180]+[SIEVE-2000]; [NET-BONGO-300]; [NET-DOUBLE-20]+[SIEVE-180]; [NET-MANTA-OI-500]; [NET-MANTA-ST-500]; [NET-REGENT-680]; [NET-SINGLE-5]+[SIEVE-20]; [NET-WPII-200]; [NET-WPII-50]; [night] [deep chlorophyll maximum layer (ENVO:0100; [night] [epipelagic mixed layer (ENVO:01000061)]; [night] [mesopelagic zone (ENVO:00000213)]; [night] [surface water layer (ENVO:00002042)]; [night] [surface water layer (ENVO:00002042)] [Anc; [night] [surface water layer (ENVO:00002042)] [bef; [night] [surface water layer (ENVO:00002042)] [bet; [night] [surface water layer (ENVO:00002042)] [Mas; [night] [surface water layer (ENVO:00002042)] [nea; [night] [surface water layer (ENVO:00002042)] [neu; [night] [surface water layer (ENVO:00002042)] [pla; [night] [surface water layer (ENVO:00002042)] [pro; [night] [surface water layer (ENVO:00002042)] [TAR; [night] [water layer with no specific feature]; [night] [water layer with no specific feature] [al; [night] [water layer with no specific feature] [Ba; [night] [water layer with no specific feature] [im; [night] [water layer with no specific feature] [ne; [RVSS]; Absorption coefficient, colored dissolved organic matter at given wavelength; Abu Dhabi to Muscat, Stations: none; Algiers to Barcelona, Stations: TARA_008-011; Ascencion to Rio de Janiero, Stations: TARA_072-076; Athens to Beyrouth, Stations: TARA_027-028; Atseranana to Mamoudzou, Stations: TARA_053-054; Backscattering coefficient of particles, 470 nm; Basis of event; Bermuda to Horta, Stations: TARA_148-151; Beyrouth to Alexandria, Stations: TARA_029-030; Bizerte to Naples, Stations: TARA_014; Brunt-Väisälä frequency, squared; Bucket, plastic 10-L; Buenos Aires to Ushuaia, Stations: TARA_079b-083; calculated from 30-day avg. Kd490 (AMODIS) using eq. 9' in Morel et al. (2007); calculated from 30-day avg. Kd490 (AMODIS) using eq. 9 in Morel et al. (2007); calculated from AMODIS products; Calculated from GlobColour products (GSM algorithm); Calculated from GlobColour products (Lee's algorithm); Calculated from GlobColour products (Morel's algorithm); calculated from in situ sensor data, calibrated using factory settings; calculated from Kd(PAR)1 and 30-day avg. daily surface PAR (AMODIS); calculated from Kd(PAR)2 and 30-day avg. daily surface PAR (AMODIS); calculated from z(Secchi Disk) and 30-day average daily PAR (AMODIS); Campaign of event; CapeTown to Ascencion, Stations: TARA_067-071; Chlorophyll a; Continuous Surface Sampling System; CTD (sbe19) and Niskin bottles (8-L or 12-L) triggered with messengers; CTD (sbe9S) and Niskin bottles (8-L or 12-L) triggered with messengers; Date/Time of event; DECK-PUMP; Density, sigma-theta (0); Depth, bottom/max; Depth, nominal; Depth, top/min; Depth of chlorophyll maximum; Depth of maximum Brunt Väisälä frequency; Depth of maximum oxygen concentration; Depth of minimum oxygen concentration; Depth of nitracline; Depth of Secchi Disk; Depth of the euphotic zone; described in Pesant et al. (2017); Diffuse attenuation coefficient at 490 nm; Diffuse attenuation coefficient of PAR; Dubrovnik to Athens, Stations: TARA_025-026; Dudinka to Pevek, Stations: TARA_182-192; Easter Island to Guayaquil, Stations: TARA_098-102; Environmental feature; Event label; Fondation Tara Expeditions; FondTara; Guayaquil to Puerto Ayora, Stations: TARA_103-106; Guayaquil to Totegegie, Stations: TARA_110-113; High Volume Peristaltic Pump; Honolulu to San Diego, Stations: TARA_131-135; Horta to La Coruna, Stations: TARA_152-154; Ilulissat to Québec, Stations: TARA_208-210; Jeddah to Djibouti, Stations: TARA_034; Latitude of event; Lisbon to Tangier, Stations: TARA_003-004; Longitude of event; Lorient to Lisbon, Stations: TARA_001-002; Lorient to Tromsø, Stations: TARA_155-166; Malé to Saint Brandon, Stations: TARA_044-049; Mamoudzou to Cape Town, Stations: TARA_055-066; Measured in situ; Method/Device of event; Mixed layer depth, upper; MSN300; Multiple opening/closing net, 300 µm meshsize; Mumbai to Malé, Stations: TARA_041-043; Murmansk to Dudinka, Stations: TARA_167-181; Muscat to Mumbai, Stations: TARA_036-040; Naples to Valetta, Stations: TARA_015-017; Neuston net, type=Manta (ALGALITA), mesh(µm)=500, width(m)=0.70, length(m)=2.5; Neuston net, type=Manta (OI), mesh(µm)=500, width(m)=0.70, length(m)=2.5; New-York City to Bermuda, Stations: TARA_146-147; Nice to Bizerte, Stations: TARA_012-013; Nitrate; OCEANOMICS; On board filtered seawater system (〈0.2 micrometre); Oxygen; Panama City to Savannah, Stations: TARA_141-143; Papeete to Honolulu, Stations: TARA_126-130; Pevek to Tuktoyaktuk, Stations: TARA_193-199; PLA; Plankton net; Plankton net, type=Bongo, mesh(µm)=180, mouth(m^2)=0.258319, length(m)=3; Plankton net, type=Bongo, mesh(µm)=300, mouth(m^2)=0.258319, length(m)=3; Plankton net, type=Regent, mesh(µm)=680, mouth(m^2)=0.754296, length(m)=4; Plankton net, type=WPII, mesh(µm)=200, mouth(m^2)=0.248505, length(m)=2.75; Plankton net, type=WPII, mesh(µm)=50, mouth(m^2)=0.248505, length(m)=2.75; Plankton net+sieve, type=Bongo, mesh(µm)=180, mouth(m^2)=0.258319, length(m)=3; Plankton net+sieve, type=Double, mesh(µm)=20, mouth(m^2)=0.192442, length(m)=2.5; Plankton net+sieve, type=single, mesh(µm)=5, mouth(m^2)=0.196349, length(m)=2.5; Port Louis to Saint Denis, Stations: TARA_050-051; Puerto Ayora to Guayaquil, Stations: TARA_107-109; Puerto Montt to Valparaiso, Stations: TARA_090-092; Québec to Lorient, Stations: none; registered at PANGAEA, Data Publisher for Earth and Environmental Science; registered at the BioSamples database; registered at the European Nucleotides Archive (ENA); Rio de Janiero to Buenos Aires, Stations: TARA_077-079a; Rosette Vertical Sampling System; Saint Denis to Antseranana, Stations: TARA_052; Salinity; Sample code/label; Sample ID; Sample material; Sample method; San Diego to Panama City, Stations: TARA_136-140; Savannah to New-York City, Stations: TARA_144-145; Sharm El Sheikh to Jeddah, Stations: TARA_031-033; Size fraction, lower threshold; Size fraction, upper threshold; Station label; SV Tara; Taiohae harbour to Papeete, Stations: TARA_122-125;
    Type: Dataset
    Format: text/tab-separated-values, 3557534 data points
    Location Call Number Expected Availability
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  • 8
    Publication Date: 2024-03-01
    Keywords: [BUCKET-10]; [CABLE]+[sbe19]+[NISKIN]; [CABLE]+[sbe9S]+[NISKIN]; [CSSS]; [day/night] [deep chlorophyll maximum layer (ENVO:; [day/night] [surface water layer (ENVO:00002042)]; [day/night] [water layer with no specific feature]; [day]; [day] [200 m]; [day] [deep chlorophyll maximum layer (ENVO:010003; [day] [epipelagic mixed layer (ENVO:01000061)]; [day] [epipelagic mixed layer (ENVO:01000061)] [pr; [day] [integrated]; [day] [integrated] [protist sampling]; [day] [mesopelagic zone (ENVO:00000213)]; [day] [mesopelagic zone (ENVO:00000213)] [also lab; [day] [near bottom]; [day] [surface water layer (ENVO:00002042)]; [day] [surface water layer (ENVO:00002042)] [also; [day] [surface water layer (ENVO:00002042)] [Ancho; [day] [surface water layer (ENVO:00002042)] [Barce; [day] [surface water layer (ENVO:00002042)] [befor; [day] [surface water layer (ENVO:00002042)] [betwe; [day] [surface water layer (ENVO:00002042)] [Europ; [day] [surface water layer (ENVO:00002042)] [In vi; [day] [surface water layer (ENVO:00002042)] [Juan; [day] [surface water layer (ENVO:00002042)] [near; [day] [surface water layer (ENVO:00002042)] [neust; [day] [surface water layer (ENVO:00002042)] [NOT n; [day] [surface water layer (ENVO:00002042)] [Patag; [day] [surface water layer (ENVO:00002042)] [plast; [day] [surface water layer (ENVO:00002042)] [proti; [day] [surface water layer (ENVO:00002042)] [TARA_; [day] [water layer with no specific feature]; [day] [water layer with no specific feature] [also; [day] [water layer with no specific feature] [Barc; [day] [water layer with no specific feature] [imag; [day] [water layer with no specific feature] [Lago; [day] [water layer with no specific feature] [merc; [day] [water layer with no specific feature] [near; [day] [water layer with no specific feature] [NOT; [DECK-PUMP]; [FSWS]; [HVP-PUMP]; [near station 95]; [NET-BONGO-180]; [NET-BONGO-180]+[SIEVE-2000]; [NET-BONGO-300]; [NET-DOUBLE-20]+[SIEVE-180]; [NET-MANTA-OI-500]; [NET-MANTA-ST-500]; [NET-REGENT-680]; [NET-SINGLE-5]+[SIEVE-20]; [NET-WPII-200]; [NET-WPII-50]; [night] [deep chlorophyll maximum layer (ENVO:0100; [night] [epipelagic mixed layer (ENVO:01000061)]; [night] [mesopelagic zone (ENVO:00000213)]; [night] [surface water layer (ENVO:00002042)]; [night] [surface water layer (ENVO:00002042)] [Anc; [night] [surface water layer (ENVO:00002042)] [bef; [night] [surface water layer (ENVO:00002042)] [bet; [night] [surface water layer (ENVO:00002042)] [Mas; [night] [surface water layer (ENVO:00002042)] [nea; [night] [surface water layer (ENVO:00002042)] [neu; [night] [surface water layer (ENVO:00002042)] [pla; [night] [surface water layer (ENVO:00002042)] [pro; [night] [surface water layer (ENVO:00002042)] [TAR; [night] [water layer with no specific feature]; [night] [water layer with no specific feature] [al; [night] [water layer with no specific feature] [Ba; [night] [water layer with no specific feature] [im; [night] [water layer with no specific feature] [ne; [RVSS]; Abu Dhabi to Muscat, Stations: none; Age; Algiers to Barcelona, Stations: TARA_008-011; Ammonium; Ammonium, standard deviation; Ascencion to Rio de Janiero, Stations: TARA_072-076; Athens to Beyrouth, Stations: TARA_027-028; Atseranana to Mamoudzou, Stations: TARA_053-054; Basis of event; Bermuda to Horta, Stations: TARA_148-151; Beyrouth to Alexandria, Stations: TARA_029-030; Biogeographical province; Bizerte to Naples, Stations: TARA_014; Bucket, plastic 10-L; Buenos Aires to Ushuaia, Stations: TARA_079b-083; Calculated (d'Ovidio et al. 2010); Calculated by vertical integration of fluorescence profiles 0-200 m or bottom; calculated from AMODIS products; Calculated from Astronomical Applicationsof the U.S. Naval Observatory; Calculated from GlobColour products (GSM algorithm); Calculated from GlobColour products (MERIS C2R Neural Network algorithm); Calculated from NISDC satellite products; Calculated from Takuvik satellite products; calculated from VGPM products; Calculated using the Arctic-adapted UQAR-TAKUVIK model; Calculated using the Darwin model; Campaign of event; CapeTown to Ascencion, Stations: TARA_067-071; Carbon, inorganic, particulate; Chlorophyll a, areal concentration; Continuous Surface Sampling System; CTD (sbe19) and Niskin bottles (8-L or 12-L) triggered with messengers; CTD (sbe9S) and Niskin bottles (8-L or 12-L) triggered with messengers; Date/Time of event; DECK-PUMP; Depth, bathymetric; Depth, bottom/max; Depth, nominal; Depth, top/min; described in Pesant et al. (2017); Distance; Dubrovnik to Athens, Stations: TARA_025-026; Dudinka to Pevek, Stations: TARA_182-192; Easter Island to Guayaquil, Stations: TARA_098-102; Environmental feature; Event label; Fondation Tara Expeditions; FondTara; Geostrophic velocity, latitudinal; Geostrophic velocity, longitudinal; Guayaquil to Puerto Ayora, Stations: TARA_103-106; Guayaquil to Totegegie, Stations: TARA_110-113; High Volume Peristaltic Pump; Honolulu to San Diego, Stations: TARA_131-135; Horta to La Coruna, Stations: TARA_152-154; IHO General Sea Areas (1953) registered at www.marineregions.org; Ilulissat to Québec, Stations: TARA_208-210; Iron, standard deviation; Iron, total; Jeddah to Djibouti, Stations: TARA_034; LATITUDE; Latitude of event; Lisbon to Tangier, Stations: TARA_003-004; Longhurst (2007); Longhurst (2007) registered at marineregions.org; LONGITUDE; Longitude of event; Lorient to Lisbon, Stations: TARA_001-002; Lorient to Tromsø, Stations: TARA_155-166; Malé to Saint Brandon, Stations: TARA_044-049; Mamoudzou to Cape Town, Stations: TARA_055-066; Marine biome; Maximum Lyapunov exponent; Method/Device of event; Moon phase, nominal; Moon phase, proportion; MSN300; Multiple opening/closing net, 300 µm meshsize; Mumbai to Malé, Stations: TARA_041-043; Murmansk to Dudinka, Stations: TARA_167-181; Muscat to Mumbai, Stations: TARA_036-040; Naples to Valetta, Stations: TARA_015-017; Net primary production of carbon; Neuston net, type=Manta (ALGALITA), mesh(µm)=500, width(m)=0.70, length(m)=2.5; Neuston net, type=Manta (OI), mesh(µm)=500, width(m)=0.70, length(m)=2.5; New-York City to Bermuda, Stations: TARA_146-147; Nice to Bizerte, Stations: TARA_012-013; Nitrate; Nitrate, standard deviation; Nitrite; Nitrite, standard deviation; Ocean and sea region; OCEANOMICS; Okubo-Weiss parameter; On board filtered seawater system (〈0.2 micrometre); Panama City to Savannah, Stations: TARA_141-143; Papeete to Honolulu, Stations: TARA_126-130; Particulate organic carbon; Pevek to Tuktoyaktuk, Stations: TARA_193-199; PLA; Plankton net; Plankton net, type=Bongo, mesh(µm)=180, mouth(m^2)=0.258319, length(m)=3; Plankton net, type=Bongo, mesh(µm)=300, mouth(m^2)=0.258319, length(m)=3; Plankton net, type=Regent, mesh(µm)=680, mouth(m^2)=0.754296, length(m)=4; Plankton net, type=WPII, mesh(µm)=200, mouth(m^2)=0.248505, length(m)=2.75; Plankton net, type=WPII, mesh(µm)=50, mouth(m^2)=0.248505, length(m)=2.75; Plankton net+sieve, type=Bongo, mesh(µm)=180, mouth(m^2)=0.258319, length(m)=3; Plankton net+sieve, type=Double, mesh(µm)=20, mouth(m^2)=0.192442, length(m)=2.5; Plankton net+sieve, type=single, mesh(µm)=5, mouth(m^2)=0.196349, length(m)=2.5; Port Louis to Saint Denis, Stations: TARA_050-051; Puerto Ayora to Guayaquil, Stations: TARA_107-109; Puerto Montt to Valparaiso, Stations: TARA_090-092; Québec to Lorient, Stations: none; Radiation, photosynthetically active per day; registered at PANGAEA, Data Publisher for Earth and Environmental Science; registered at the BioSamples database; registered at the European Nucleotides Archive (ENA); reported on logsheets or by data curators; Residence time; Rio de Janiero to Buenos Aires, Stations: TARA_077-079a; Rosette Vertical Sampling System; Saint Denis to Antseranana, Stations: TARA_052; Sample code/label; Sample ID; Sample material; Sample method; San Diego to Panama City, Stations: TARA_136-140; Savannah to New-York City, Stations: TARA_144-145; Sea ice concentration; Sea Ice free period,
    Type: Dataset
    Format: text/tab-separated-values, 1847508 data points
    Location Call Number Expected Availability
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