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  • 1
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    In:  Geophys. Res. Lett., Luxembourg, Conseil de l'Europe, vol. 32, no. 9, pp. 245-254, pp. L09603, (ISSN: 1340-4202)
    Publication Date: 2005
    Keywords: Tsunami(s) ; Earthquake ; Crustal deformation (cf. Earthquake precursor: deformation or strain) ; GRL
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  • 2
    Publication Date: 2014-12-17
    Description: Glutathionylation plays a central role in cellular redox regulation and anti-oxidative defense. Glutaredoxins are primarily responsible reversing glutathionylation and their activity therefore affects a range of cellular processes, making them prime candidates for computational systems biology studies. However, two distinct kinetic mechanisms involving either one (monothiol) or both (dithiol) active-site cysteines have been proposed for their deglutathionylation activity and initial studies predicted that computational models based on either of these mechanisms will have different structural and kinetic properties. Further, a number of other discrepancies including the relative activity of active-site mutants and contrasting reciprocal plot kinetics have also been reported for these redoxins. Using kinetic modeling, we show that the dithiol and monothiol mechanisms are identical and, we were also able to explain much of the discrepant data found within the literature on glutaredoxin activity and kinetics. Moreover, our results have revealed how an apparently futile side-reaction in the monothiol mechanism may play a significant role in regulating glutaredoxin activity in vivo.
    Print ISSN: 0144-8463
    Electronic ISSN: 1573-4935
    Topics: Biology , Chemistry and Pharmacology
    Published by Portland Press
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  • 3
    Publication Date: 2013-02-06
    Description: The molecular basis of insulin resistance induced by HIV protease inhibitors (HPIs) remains unclear. In this study, Chinese hamster ovary cells transfected with high levels of human insulin receptor (CHO-IR) and 3T3-L1 adipocytes were used to elucidate the mechanism of this side effect. Indinavir and nelfinavir induced a significant decrease in tyrosine phosphorylation of the insulin receptor β-subunit. Indinavir caused a significant increase in the phosphorylation of insulin receptor substrate-1 (IRS-1) on serine 307 (S307) in both CHO-IR cells and 3T3-L1 adipocytes. Nelfinavir also inhibited phosphorylation of Map/ERK kinase without affecting insulin-stimulated Akt phosphorylation. Concomitantly, levels of protein tyrosine phosphatase 1B (PTP1B), suppressor of cytokines signalling-1 and -3 (SOCS-1 and -3), Src homology 2B (SH2B) and adapter protein with a pleckstrin homology domain and an SH2 domain (APS) were not altered significantly. When CHO-IR cells were pre-treated with sodium salicylate (NaSal), the effects of indinavir on tyrosine phosphorylation of the IR β-subunit and phosphorylation of IRS-1 at S307 were abrogated. These data suggest a potential role for the NFκB pathway in insulin resistance induced by HPIs. J. Cell. Biochem. © 2013 Wiley Periodicals, Inc.
    Electronic ISSN: 0091-7419
    Topics: Biology , Chemistry and Pharmacology , Medicine
    Published by Wiley
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  • 4
    Publication Date: 2016-11-17
    Description: Corrigendum: An essential receptor for adeno-associated virus infection Nature 539, 7629 (2016). doi:10.1038/nature19835 Author: S. Pillay, N. L. Meyer, A. S. Puschnik, O. Davulcu, J. Diep, Y. Ishikawa, L. T. Jae, J. E. Wosen, C. M. Nagamine, M. S. Chapman & J. E. Carette Nature530, 108–112 (2016); doi:10.1038/nature16465In this Letter, there is an error in Extended Data Fig. 1b. During preparation of the figure, an error was introduced while copying the flow cytometry plot for ‘HAP1 WT+isotype’ and the y
    Print ISSN: 0028-0836
    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
    Published by Springer Nature
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  • 5
    Publication Date: 2016-01-28
    Description: Adeno-associated virus (AAV) vectors are currently the leading candidates for virus-based gene therapies because of their broad tissue tropism, non-pathogenic nature and low immunogenicity. They have been successfully used in clinical trials to treat hereditary diseases such as haemophilia B (ref. 2), and have been approved for treatment of lipoprotein lipase deficiency in Europe. Considerable efforts have been made to engineer AAV variants with novel and biomedically valuable cell tropisms to allow efficacious systemic administration, yet basic aspects of AAV cellular entry are still poorly understood. In particular, the protein receptor(s) required for AAV entry after cell attachment remains unknown. Here we use an unbiased genetic screen to identify proteins essential for AAV serotype 2 (AAV2) infection in a haploid human cell line. The most significantly enriched gene of the screen encodes a previously uncharacterized type I transmembrane protein, KIAA0319L (denoted hereafter as AAV receptor (AAVR)). We characterize AAVR as a protein capable of rapid endocytosis from the plasma membrane and trafficking to the trans-Golgi network. We show that AAVR directly binds to AAV2 particles, and that anti-AAVR antibodies efficiently block AAV2 infection. Moreover, genetic ablation of AAVR renders a wide range of mammalian cell types highly resistant to AAV2 infection. Notably, AAVR serves as a critical host factor for all tested AAV serotypes. The importance of AAVR for in vivo gene delivery is further highlighted by the robust resistance of Aavr(-/-) (also known as Au040320(-/-) and Kiaa0319l(-/-)) mice to AAV infection. Collectively, our data indicate that AAVR is a universal receptor involved in AAV infection.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Pillay, S -- Meyer, N L -- Puschnik, A S -- Davulcu, O -- Diep, J -- Ishikawa, Y -- Jae, L T -- Wosen, J E -- Nagamine, C M -- Chapman, M S -- Carette, J E -- DP2 AI104557/AI/NIAID NIH HHS/ -- R01 GM066875/GM/NIGMS NIH HHS/ -- U19 AI109662/AI/NIAID NIH HHS/ -- England -- Nature. 2016 Feb 4;530(7588):108-12. doi: 10.1038/nature16465. Epub 2016 Jan 27.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Microbiology and Immunology, Stanford University School of Medicine, 299 Campus Drive, Stanford, California 94305, USA. ; Department of Biochemistry and Molecular Biology, School of Medicine, Oregon Health &Science University, 3181 Sam Jackson Park Road, Portland, Oregon 97239-3098, USA. ; Shriners Hospital for Children, 3101 Sam Jackson Park Road, Portland, Oregon 97239, USA. ; Netherlands Cancer Institute, Plesmanlaan 121, 1066 CX, Amsterdam, Netherlands. ; Department of Comparative Medicine, Stanford University School of Medicine, 287 Campus Drive, Stanford, California 94305, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26814968" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Antibodies/immunology/pharmacology ; Cell Line ; Dependovirus/classification/drug effects/*physiology ; Endocytosis/drug effects ; Female ; Gene Deletion ; Genetic Therapy/methods ; Host Specificity ; Humans ; Male ; Mice ; Parvoviridae Infections/*metabolism/*virology ; Receptors, Cell Surface/antagonists & inhibitors/deficiency/genetics/*metabolism ; Receptors, Virus/antagonists & inhibitors/deficiency/genetics/*metabolism ; *Viral Tropism/drug effects ; Virus Internalization/drug effects ; trans-Golgi Network/drug effects
    Print ISSN: 0028-0836
    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 6
    ISSN: 1432-0495
    Keywords: Key words Mfolozi Estuary ; Suspended particulate matter ; Shear stress ; Density fronts
    Source: Springer Online Journal Archives 1860-2000
    Topics: Geosciences
    Notes: Abstract  The Mfolozi Estuary on the KwaZulu-Natal coast of South Africa is the most turbid estuary in Natal due to poor catchment management, leading to large quantities of suspended particulate matter (SPM) entering the estuary from the Mfolozi River. This paper quantities some of the solute and sediment dynamics in the Mfolozi Estuary where the main documented environmental concern is the periodic input of SPM from the Mfolozi Estuary to the St. Lucia system, causing reduction of light penetration and endangering biological productivity in this important nature reserve. Synoptic water level results have allowed reach mean bed shear stresses and velocities to be calculated for an observed neap tidal cycle. Results indicate that ebb velocities dominate the sediment transport processes in the estuary when fluvial input in the Mfolozi River is of the order of 15–20 m3 s–1. Observed and predicted flood tide velocities are too low (〈0.35 m s–1) to suspend and transport significant amounts of SPM. Observed results indicate that although the SPM load entering the estuary is dominantly from the Mfolozi River, the Msunduzi River flow plays a major role in the composition of the estuary's salinity and velocity fields. It is calculated that the Mfolozi Estuary would fill with sediment in 1.3 years if it was cut off from the sea. The major fluvial flood events help maintain the estuary by periodically pushing sediment seawards (spit progrades seawards 5 m yr–1) and scouring and maintaining the main flow channel in the estuary. During low fluvial flow conditions, tidal flow velocities will become the dominant control on sediment transport in the estuary. Interchange of SPM between the St. Lucia and Mfolozi estuaries under present conditions is complicated by the strong transverse velocity shear between the two systems at their combined mouth. This is creating a salinity-maintained axial convergence front that suppresses mixing of solutes and SPM between the systems for up to 10 h of the tidal cycle during observed conditions.
    Type of Medium: Electronic Resource
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  • 7
    Electronic Resource
    Electronic Resource
    Amsterdam : Elsevier
    Biochemical and Biophysical Research Communications 116 (1983), S. 966-973 
    ISSN: 0006-291X
    Source: Elsevier Journal Backfiles on ScienceDirect 1907 - 2002
    Topics: Biology , Chemistry and Pharmacology , Physics
    Type of Medium: Electronic Resource
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  • 8
    Electronic Resource
    Electronic Resource
    Amsterdam : Elsevier
    Biochemical and Biophysical Research Communications 116 (1983), S. 966-973 
    ISSN: 0006-291X
    Source: Elsevier Journal Backfiles on ScienceDirect 1907 - 2002
    Topics: Biology , Chemistry and Pharmacology , Physics
    Type of Medium: Electronic Resource
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  • 9
    Electronic Resource
    Electronic Resource
    Amsterdam : Elsevier
    Estuarine, Coastal and Shelf Science 35 (1992), S. 331-345 
    ISSN: 0272-7714
    Keywords: SC ; Spartina marsh ; bass Creek ; errors ; long Term Ecological Research (LTER) ; north Inlet ; sediment transport rate ; suspended sediment concentration ; tidal estuary
    Source: Elsevier Journal Backfiles on ScienceDirect 1907 - 2002
    Topics: Biology , Geography , Geosciences
    Type of Medium: Electronic Resource
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  • 10
    Electronic Resource
    Electronic Resource
    Springer
    The journal of supercomputing 11 (1997), S. 41-60 
    ISSN: 1573-0484
    Keywords: Computational fluid dynamics ; Navier-Stokes and Euler equations ; computation and communication ; scalability ; shared memory ; distributed memory ; network of workstations ; interconnection network ; message-passing library
    Source: Springer Online Journal Archives 1860-2000
    Topics: Computer Science
    Notes: Abstract We study the computational, communication, and scalability characteristics of a computational fluid dynamics application, which solves the time-accurate flow field of a jet using the compressible Navier-Stokes equations, on a variety of parallel architectural platforms. The platforms chosen for this study are a cluster of workstations (the LACE experimental testbed at NASA Lewis), a shared-memory multiprocessor (the CRAY Y-MP), and distributed-memory multiprocessors with different topologies (the IBM SP and the CRAY T3D). We investigate the impact of various networks connecting the cluster of workstations on the performance of the application and the overheads induced by popular message-passing libraries used for parallelization. The work also highlights the importance of matching the memory bandwidth to processor speed for good single processor performance. By studying the performance of an application on a variety of architectures, we are able to point out the strengths and weaknesses of each of the example computing platforms.
    Type of Medium: Electronic Resource
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