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  • 1
    Publication Date: 2019-07-17
    Description: Recent applications of molecular genetics to edaphic microbial communities of the McMurdo Dry Valleys and elsewhere have rejected a long-held belief that Antarctic soils contain extremely limited microbial diversity. The Inter-Valley Soil Comparative Survey (IVSCS) aims to elucidate the factors shaping these unique microbial communities and their biogeography by integrating molecular genetic approaches with biogeochemical analyses. Although the microbial communities of Dry Valley soils may be complex, there is little doubt that the ecosystem’s food web is relatively simple, and evidence suggests that physicochemical conditions may play the dominant role in shaping microbial communities. To examine this hypothesis, bacterial communities from representative soil samples collected in four geographically disparate Dry Valleys were analyzed using molecular genetic tools, including pyrosequencing of 16S rRNA gene PCR amplicons. Results show that the four communities are structurally and phylogenetically distinct, and possess significantly different levels of diversity. Strikingly, only 2 of 214 phylotypes were found in all four valleys, challenging a widespread assumption that the microbiota of the Dry Valleys is composed of a few cosmopolitan species. Analysis of soil geochemical properties indicated that salt content, alongside altitude and [Cu2+], was significantly correlated with differences in microbial communities. Our results indicate that the microbial ecology of Dry Valley soils is highly localized and that physicochemical factors potentially play major roles in shaping the microbiology of ice-free areas of Antarctica. These findings hint at links between Dry Valley glacial geomorphology and microbial ecology, and raise previously unrecognized issues related to environmental management of this unique ecosystem.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , isiRev
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  • 2
    Publication Date: 2024-04-01
    Description: This chapter is a set of accounts of the film Who is Europe? It is a conversation between the filmmaker and the editors of this book, some of whom were directly involved in the filmmaking too. It is a good idea to watch the film before reading on. It is available at https://vimeo.com/303706985.
    Keywords: Europe ; thema EDItEUR::N History and Archaeology::NH History ; thema EDItEUR::J Society and Social Sciences::JB Society and culture: general
    Language: English
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  • 3
    Electronic Resource
    Electronic Resource
    s.l. : American Chemical Society
    Langmuir 9 (1993), S. 2351-2355 
    ISSN: 1520-5827
    Source: ACS Legacy Archives
    Topics: Chemistry and Pharmacology
    Type of Medium: Electronic Resource
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  • 4
    ISSN: 1520-5126
    Source: ACS Legacy Archives
    Topics: Chemistry and Pharmacology
    Type of Medium: Electronic Resource
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  • 5
    Electronic Resource
    Electronic Resource
    Springer
    Archives of microbiology 173 (2000), S. 325-332 
    ISSN: 1432-072X
    Keywords: Methanotroph Methane oxidation Methane monooxygenase genes Regulation
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract. Methanotrophs are ubiquitous in the environment and play an important role in mitigating global warming due to methane. They are also potentially interesting for industrial applications such as production of bulk chemicals or bioremediation. The first step in the oxidation of methane is the conversion to methanol by methane monooxygenase, the key enzyme, which exists in two forms: the cytoplasmic, soluble methane monooxygenase (sMMO) and the membrane-bound, particulate methane monooxygenase (pMMO). This paper reviews the biochemistry and molecular biology of both forms of MMO. In the past few years there have been many exciting new findings. sMMO components have been expressed in heterologous and homologous hosts. The pMMO has been purified and biochemically studied in some detail and the genes encoding the pMMO have been sequenced. Copper ions have been shown to play a key role in regulating the expression of both MMO enzyme complexes. We also present a model for copper regulation based on results from Northern analysis, primer-extensions and new sequence data, and raise a number of unanswered questions for future studies.
    Type of Medium: Electronic Resource
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  • 6
    ISSN: 1432-072X
    Keywords: Methanotroph Methylococcus capsulatus Outer membrane protein OprF protein OmpA protein
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract. The gene encoding a major outer membrane protein (MopB) of the methanotroph Methylococcus capsulatus (Bath) was cloned and sequenced. The cloned DNA contained an open reading frame of 1044 bp coding for a 348-amino-acid polypeptide with a 21-amino-acid leader peptide. Comparative sequence analysis of the predicted amino acid sequence revealed that the C-terminal part of MopB possessed sequences that are conserved in the OmpA family of proteins. The N-terminal half of the protein had no significant sequence similarity to other proteins in the databases, but the predicted secondary structure showed stretches of amphipathic β-strands typical of transmembrane segments of outer membrane proteins. A region with four cysteines similar to the cysteine-encompassing region of the OprF of Pseudomonas aeruginosa was found toward the C-terminal part of MopB. Results from whole-cell labeling with the fluorescent thiol-reacting reagent 5-iodoacetamidofluorescein indicated a surface-exposed location for these cysteines. A probe consisting of the 3′-end of the mopB gene hybridized to the type I methanotroph Methylomonas methanica S1 in Southern blots containing DNA from nine methanotrophic strains representing six different genera.
    Type of Medium: Electronic Resource
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  • 7
    ISSN: 1432-072X
    Keywords: Thiobacillus taxonomy ; Thiobacillus aquaesulis ; Thiobacillus halophilus ; 16S rRNA phylogeny ; 16S rDNA sequences ; Proteobacteria
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Total base sequences of the 16S rRNA genes ofThiobacillus halophilus andThiobacillus aquaesulis show that these bacteria fall into the gamma- and beta-subdivisions, respectively of the Proteobacteria. The closest relative ofT. halophilus isThiobacillus hydrothermalis (with 98.7% similarity), and the closest relative ofT. aquaesulis isThiobacillus thioparus (93.2% similarity). Physiological properties and mol% G+C content of their DNA serve to confirm that these four organisms are all distinct species. It is reiterated that the species currently assigned to the genusThiobacillus are clearly so diverse that they need reclassification into several genera. The type species,T. thioparus, is unequivocally placed in the beta-subdivision of the Proteobacteria, thus requiring that the use of the genus nameThiobacillus be restricted to the chemolithoautotrophic species falling into that group.T. aquaesulis andT. thioparus may thus be regarded as true species ofThiobacillus. The relatively large number of obligately chemolithoautotrophicThiobacillus species falling in the gamma-subdivision of the Proteobacteria need further study in order to assess the case for reclassification into one or more new or different genera.
    Type of Medium: Electronic Resource
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  • 8
    Electronic Resource
    Electronic Resource
    College Park, Md. : American Institute of Physics (AIP)
    The Journal of Chemical Physics 87 (1987), S. 4823-4828 
    ISSN: 1089-7690
    Source: AIP Digital Archive
    Topics: Physics , Chemistry and Pharmacology
    Notes: The structural phase transition that occurs in solid t-butyl cyanide just before melting has been studied by constant-temperature, constant-pressure, molecular-dynamics simulations. The simulations were based on a six-site potential model with parameters obtained from static-energy calculations for the observed, low-temperature, monoclinic structure. Changes in the lattice constants and in order parameters for the molecular orientations show that an apparently first-order transition to a tetragonal, orientationally disordered phase occurs at a temperature in the range between 250 and 275 K; experimentally, a similar transition is observed at 233 K. Comparison is made with neutron-scattering results for the tetragonal phase, and deficiencies in the potential model and in the model used to parametrize it are discussed.
    Type of Medium: Electronic Resource
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  • 9
    Electronic Resource
    Electronic Resource
    College Park, Md. : American Institute of Physics (AIP)
    The Journal of Chemical Physics 93 (1990), S. 5156-5166 
    ISSN: 1089-7690
    Source: AIP Digital Archive
    Topics: Physics , Chemistry and Pharmacology
    Notes: Effective pair-potential models, parametrized to the properties of the pure liquids, have been used in molecular-dynamics simulations of aqueous (binary) mixtures containing methanol, ammonia, or acetone. Results are reported for thermodynamic and structural properties, self-diffusion coefficients, and reorientational correlation times. There is fair agreement with a wide variety of experimental data. The pattern of hydrogen bonding and the distribution of hydrogen-bond lifetimes in the simulated mixtures have been investigated. The observed anomalous behavior of methanol and acetone solutions appears to be related to specific features of the hydrogen bonding—namely, the ability of these molecules to exhibit enhanced acceptor character. As a consequence of the assumed intermolecular potentials, the balance between the competing effects of hydrophobic hydration of methyl groups and hydrogen bonding to oxygen atoms is tipped towards the latter. A number of interesting structural effects have been noted. In particular, the distribution function g(R) for water oxygen atoms sharpens appreciably on addition of the second component. The structure of the water–ammonia system is discussed in detail. There is good accord with available x-ray data at low concentration, but there are no measurements available to test the predictions at high concentration.
    Type of Medium: Electronic Resource
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  • 10
    Electronic Resource
    Electronic Resource
    College Park, Md. : American Institute of Physics (AIP)
    The Journal of Chemical Physics 82 (1985), S. 4690-4698 
    ISSN: 1089-7690
    Source: AIP Digital Archive
    Topics: Physics , Chemistry and Pharmacology
    Notes: The properties of solid lithium sulphate have been studied by computer simulation. At sufficiently high temperatures, the simulated crystal behaves as a solid electrolyte with lithium ion (jump) diffusion and sulphate group rotation. The atomic radial distribution functions in the rotator phase are discussed in relation to the low temperature, fully ordered, monoclinic structure and the nature of the orientational disorder of the sulphate groups is characterized in terms of tetrahedral rotor functions. The crystal structure factor is found to be sensitive to the model adopted for the charge distribution of the anions; good agreement with experimental neutron diffraction data is obtained when a charge distribution consistent with ab initio quantum mechanical calculations is used. The phase transition whereby the low temperature monoclinic structure transforms to the disordered cubic phase has been investigated by the constant pressure molecular dynamics method. The nature of the lithium ion diffusive motion and its coupling to the anion reorientation, the relaxation of the orientational order and the lattice vibrations are all briefly discussed.
    Type of Medium: Electronic Resource
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