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  • 1
    Publication Date: 2012-01-13
    Description: Retinoblastoma is an aggressive childhood cancer of the developing retina that is initiated by the biallelic loss of RB1. Tumours progress very quickly following RB1 inactivation but the underlying mechanism is not known. Here we show that the retinoblastoma genome is stable, but that multiple cancer pathways can be epigenetically deregulated. To identify the mutations that cooperate with RB1 loss, we performed whole-genome sequencing of retinoblastomas. The overall mutational rate was very low; RB1 was the only known cancer gene mutated. We then evaluated the role of RB1 in genome stability and considered non-genetic mechanisms of cancer pathway deregulation. For example, the proto-oncogene SYK is upregulated in retinoblastoma and is required for tumour cell survival. Targeting SYK with a small-molecule inhibitor induced retinoblastoma tumour cell death in vitro and in vivo. Thus, retinoblastomas may develop quickly as a result of the epigenetic deregulation of key cancer pathways as a direct or indirect result of RB1 loss.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3289956/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3289956/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Zhang, Jinghui -- Benavente, Claudia A -- McEvoy, Justina -- Flores-Otero, Jacqueline -- Ding, Li -- Chen, Xiang -- Ulyanov, Anatoly -- Wu, Gang -- Wilson, Matthew -- Wang, Jianmin -- Brennan, Rachel -- Rusch, Michael -- Manning, Amity L -- Ma, Jing -- Easton, John -- Shurtleff, Sheila -- Mullighan, Charles -- Pounds, Stanley -- Mukatira, Suraj -- Gupta, Pankaj -- Neale, Geoff -- Zhao, David -- Lu, Charles -- Fulton, Robert S -- Fulton, Lucinda L -- Hong, Xin -- Dooling, David J -- Ochoa, Kerri -- Naeve, Clayton -- Dyson, Nicholas J -- Mardis, Elaine R -- Bahrami, Armita -- Ellison, David -- Wilson, Richard K -- Downing, James R -- Dyer, Michael A -- CA21765/CA/NCI NIH HHS/ -- CA64402/CA/NCI NIH HHS/ -- EY014867/EY/NEI NIH HHS/ -- EY018599/EY/NEI NIH HHS/ -- GM81607/GM/NIGMS NIH HHS/ -- R01 CA155202/CA/NCI NIH HHS/ -- R01 EY014867/EY/NEI NIH HHS/ -- R01 EY014867-02/EY/NEI NIH HHS/ -- R01 EY018599/EY/NEI NIH HHS/ -- R01 EY018599-03/EY/NEI NIH HHS/ -- Howard Hughes Medical Institute/ -- England -- Nature. 2012 Jan 11;481(7381):329-34. doi: 10.1038/nature10733.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Computational Biology and Bioinformatics, St Jude Children's Research Hospital, Memphis, Tennessee 38105, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/22237022" target="_blank"〉PubMed〈/a〉
    Keywords: Aneuploidy ; Animals ; Cell Death/drug effects ; Cell Line ; Cell Survival/drug effects ; Chromosomal Instability/genetics ; Epigenesis, Genetic/*genetics ; Gene Expression Regulation, Neoplastic ; Genes, Retinoblastoma/genetics ; *Genomics ; Humans ; Intracellular Signaling Peptides and Proteins/antagonists & ; inhibitors/genetics/metabolism ; Mice ; *Molecular Targeted Therapy ; Mutation/genetics ; Protein Kinase Inhibitors/*pharmacology/therapeutic use ; Protein-Tyrosine Kinases/antagonists & inhibitors/genetics/metabolism ; Retinoblastoma/*drug therapy/*genetics/pathology ; Retinoblastoma Protein/deficiency/genetics ; Sequence Analysis, DNA ; Xenograft Model Antitumor Assays
    Print ISSN: 0028-0836
    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 2
    Publication Date: 2014-12-02
    Description: A first-time chemometric study of energy-dispersive X-ray (EDX) data of Charophyta gyrogonites is presented. Specimen provenance is a microbialitic carbonate lacustrine succession from the Triassic (Anisian, 243.8 ± 1.9 Ma) of the Cerro Puntudo Formation, San Juan, Argentina. Gyrogonites from three different strata of the succession are studied. Data obtained by EDX include major and minor components, which are analyzed by principal component analysis (PCA). The aim of this study is twofold: first to determine the preservation features of gyrogonites by way of a chemometric approach (i.e., EDX followed by PCA) and then to infer the likely, original chemical composition of the paleolake inhabited by charophytes. EDX spectra show the presence of O, Ca, and minor elements (e.g., Si and Mg), indicating a predominantly calcium carbonate (CaCO 3 ) composition. Principal component analysis supports differences obtained between central and peripheral areas of the gyrogonites, indicating a higher CaCO 3 content in their central part. On the other hand, in their outer part, the CaCO 3 diminishes and the presence of Si compounds is recorded. No significant differences among gyrogonites from the three different strata are found, implying a similar preservation mode. This suggests a differential diagenetic pattern for the external cells of the gyrogonites than their centers. These results have implications regarding the chemical composition of the paleolake water (Si and Ca availability) and the provenance and catchment areas. Results are encouraging regarding the usefulness of a chemometric approach for studies of fossil remains in lacustrine environments when other techniques of chemical analysis are not available.
    Print ISSN: 0883-1351
    Electronic ISSN: 0883-1351
    Topics: Geosciences
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  • 3
    Publication Date: 2019
    Description: 〈span〉〈div〉ABSTRACT〈/div〉Bioerosion by microorganisms is termed microbioerosion. In aquatic systems, microbioerosion affects various substrates, most commonly relatively soluble ones such as sulfates, phosphates, and carbonates. However, the record of microbioerosion in fossil calcareous organisms in lake environments is limited. In northern Mendoza Province, at the locality Paramillos de Uspallata, Triassic sedimentary rocks outcrop, including the Agua de la Zorra Formation, which was deposited in a deltaic and lacustrine system. This study assesses possible bioerosion by microorganisms on spinicaudata shells from the lacustrine sequence and discusses their preservation potential in lacustrine environments. Spinicaudatans from the Agua de la Zorra Formation were analyzed under a binocular microscope and via scanning electron microscopy. Traces, the product of microbioerosion, preserved as molds, were assigned as Type 1 and 2 and were then compared with those generated by cyanobacteria, bacteria, chlorophyte, and fungi that inhabit fresh and brackish water environments. Microbioerosion occurs post-mortem and enhances dissolution of the spinicaudata shells. This, together with bias in extraction methodologies and sampling, is considered the reason for the rarity of spinicaudatans with traces of bioerosion in the lacustrine record.〈/span〉
    Print ISSN: 0883-1351
    Electronic ISSN: 0883-1351
    Topics: Geosciences
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  • 4
    Publication Date: 2014-11-24
    Print ISSN: 0883-1351
    Electronic ISSN: 0883-1351
    Topics: Geosciences
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  • 5
    Publication Date: 2017-02-13
    Print ISSN: 0921-2728
    Electronic ISSN: 1573-0417
    Topics: Biology , Geosciences
    Published by Springer
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