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agplus: a rapid and flexible tool for aggregation plots (2015)

Maehara, K., Ohkawa, Y.

Oxford University Press

In: Bioinformatics

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Publication Date: 2015-09-11

Description: : Aggregation plots are frequently used to evaluate signal distributions at user-interested points in ChIP-Seq data analysis. agplus, a new and simple command-line tool, enables rapid and flexible generation of text tables tailored for aggregation plots from which users can easily design multiple groups based on user-definitions such as regulatory regions or transcription initiation sites. Availability and Implementation: This software is implemented in Ruby, supported on Linux and Mac OSX, and freely available at http://github.com/kazumits/agplus Contact: yohkawa@epigenetics.med.kyushu-u.ac.jp

Print ISSN: 1367-4803

Electronic ISSN: 1460-2059

Topics: Biology , Computer Science , Medicine

Published by Oxford University Press

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