ALBERT

All Library Books, journals and Electronic Records Telegrafenberg

Your email was sent successfully. Check your inbox.

An error occurred while sending the email. Please try again.

Proceed reservation?

Export
Filter
  • Elsevier  (940,217)
  • 2015-2019  (936,997)
  • 1945-1949  (3,220)
Collection
Years
Year
  • 101
    Publication Date: 2020-02-24
    Description: We formulate a mathematical model for a geothermal basin with an idealized geometry characterized by: (1) radial symmetry around an extracting well (or a cluster of wells), (2) a relatively thin horizontal fractured layer lying underneath a low permeability, low porosity rock layer, saturated with water. Vaporization is allowed only at the boundary of the extracting well (or well cluster). The model is based on the assumption that the flow from the reservoir to the well is fed by a gravity driven flow through the overstanding rocks. Despite the various simplifying assumptions, the resulting mathematical problem is considerably difficult also because we consider the effect of thermal expansion and thermal variation of viscosity. Though there is no evidence that the assumed configuration of the basin approaches the structure of a known geothermal field, the results obtained match with surprising accuracy the data of a specific field in the Mt. Amiata area (data kindly provided by ENEL Green Power through Tuscany Region).
    Description: Published
    Description: 37-54
    Description: 5A. Energia e georisorse
    Description: 6A. Monitoraggio ambientale, sicurezza e territorio
    Description: 7A. Geofisica di esplorazione
    Description: 3IT. Calcolo scientifico e sistemi informatici
    Description: JCR Journal
    Description: restricted
    Keywords: Geothermal reservoirs ; Porous media ; Permeability estimation ; Fractured media ; 01. Atmosphere::01.02. Ionosphere::01.02.01. Ion chemistry and composition ; 03. Hydrosphere::03.02. Hydrology::03.02.02. Hydrological processes: interaction, transport, dynamics ; 03. Hydrosphere::03.02. Hydrology::03.02.05. Models and Forecasts ; 05. General::05.01. Computational geophysics::05.01.03. Inverse methods ; 05. General::05.01. Computational geophysics::05.01.04. Statistical analysis ; 05. General::05.05. Mathematical geophysics::05.05.99. General or miscellaneous
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Type: article
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 102
    Publication Date: 2020-02-24
    Description: Serpentinization of ultramafic rocks is considered a major process of production of abiotic methane (CH4) and hydrogen (H2) on Earth, and it may be responsible for CH4 occurrence on other planets. While serpentinization and CH4 synthesis have been widely studied and modeled in high temperature hydrothermal conditions, such as on submarine mid-ocean ridges, the increasing number of discoveries of abiotic CH4 in ophiolites on continents shows the importance of present-day (meteoric water driven) serpentinization in low temperature (〈100 °C) gas synthesis. As a new case, we report compositional, isotopic, and flux data of gas dissolved in hyperalkaline Ca-OH waters issuing from serpentinized peridotites at Genova (Italy). CH4 is dominantly abiotic (δ13C: -9 ‰ VPDB; δ2H: -168 to - 225 ‰ VSMOW), similar to that released by ophiolites in Oman, Turkey, the Philippines, and by the submarine Lost City serpentinization system. While the absence of CO2 was expected in this kind of fluids, the absence of H2 is unusual. This could be due to hydration of olivine and pyroxene by CO2-rich fluids, eventually associated with high silica activity, which inhibits H2 formation and produces CH4 directly. Thermodynamic modeling and H2O-CH4 isotope equilibrium confirm the low temperatures (〈60°C) of the serpentinization system, and thus the abiotic methane synthesis.
    Description: Published
    Description: 248-251
    Description: 7A. Geofisica di esplorazione
    Description: N/A or not JCR
    Description: restricted
    Keywords: methane, ophiolites, serpentinization ; 03. Hydrosphere::03.04. Chemical and biological::03.04.05. Gases
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Type: article
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 103
    Publication Date: 2020-05-29
    Description: The structural integrity of pipelines undergone seismic waves is crucial for industrial installation and for the distributed transportation networks of gaseous and liquid fluids. However, it is nowadays proved that the definition of seismic vulnerability based on purely, structural-derived limit states or on return-to-service or even on the purely economic repair rate indications, is not sufficient for the holistic analysis of risks. On the other hand, detailed numerical studies based on full analyses (including fluid/soil/structure interaction) are too expensive for the aims of risk assessment and simplified methodologies are still needed.In this paper, a large database of earthquake-induced damage for steel and non-steel pipelines is presented. Each case was analyzed and collected from post-earthquake reconnaissance, seismic engineering reports and technical papers. The database may be adopted for the definition of specific vulnerability function (fragility curves), which are commonly implemented in multi-hazard analyses, and more in general for the assessment of Na-Tech risks (Natural events triggering Technological disasters). Seismic damage to pipelines in the framework of Na-Tech risk assessment. Available from: https://www.researchgate.net/publication/271673585_Seismic_damage_to_pipelines_in_the_framework_of_Na-Tech_risk_assessment [accessed Jun 12, 2015].
    Description: Published
    Description: 159-162
    Description: 3T. Pericolosità sismica e contributo alla definizione del rischio
    Description: JCR Journal
    Description: restricted
    Keywords: Earthquake ; Na-Tech ; Ground failure ; Lifeline ; Fragility curve ; Pipelines ; 04. Solid Earth::04.06. Seismology::04.06.11. Seismic risk
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Type: article
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 104
    Publication Date: 2019-12-05
    Description: This study reports the complex textural and chemical features of K-feldspar megacrysts (up to 5 cm long) hosted in trachydacitic lava flows, lava domes, and coulées from Mt. Amiata volcano (Tuscan Magmatic Province, Central Italy). Backscattering and cathodoluminescence imaging, coupled with core to rim major and trace elements patterns, reveal a complex zoning, and resorption surfaces associated with sharp chemical variations (e.g., Sr and Ba). These zoning patterns originated by disequilibrium and re-equilibration events, related to the repetitive influx of mafic magmas or convective motions in the trachydacitic magma reservoir. Multiple mafic magma refilling events are also supported by the field occurrence of abundant microgranular magmatic enclaves in the studied products. Our results highlight that the abnormal dimension of the studied K-feldspars originates by the interplay between petrological and kinetic processes involving: (i) extensive dissolution; (ii) heterogeneous nucleation; (iii) alternation of spasmodic growth events in disequilibrium and near-equilibrium crystallization. Repetitive influx of hotter magmas and reheating can determine the thermal condition to the growth of few, large K-felspar megacrysts. Also, the strong textural and chemical similarities observed in the K-feldspar megacrysts from Mt. Amiata volcanic rocks and Mt. Capanne monzogranite (Elba Island, Central Italy) support the hypothesis of a phenocrystic origin of intrusive K-feldspar megacrysts.
    Description: Tuscan regional authority (Regione Toscana) in the framework of the LAMMA-CNR Project “Monografia vulcanologica del Monte Amiata”
    Description: Published
    Description: 569-583
    Description: 4V. Processi pre-eruttivi
    Description: JCR Journal
    Keywords: K-feldspar megacrysts ; feldspar microtexture ; chemical zoning ; trace elements ; magma mixing ; dissolution/recrystallization ; Mount Amiata ; Textural and chemical zoning of K-feldspar megacrysts from Mt. Amiata Volcano
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Type: article
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 105
    Publication Date: 2017-02-02
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , isiRev
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 106
    Publication Date: 2015-12-01
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , isiRev , info:eu-repo/semantics/article
    Format: application/pdf
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 107
    Publication Date: 2019-07-17
    Description: Reactive iron (oxyhydr)oxide minerals preferentially undergo early diagenetic redox cycling which can result in the production of dissolved Fe(II), the adsorption of Fe(II) onto particle surfaces, and the formation of authigenic Fe minerals. The partitioning of iron in sediments has traditionally been studied by applying sequential extractions that target operationally-defined iron phases. Here, we complement an existing sequential leaching method by developing a sample processing protocol for δ56Fe analysis, which we subsequently use to study Fe phase-specific fractionation related to dissimilatory iron reduction in a modern marine sediment. Carbonate-Fe was extracted by acetate, easily reducible oxides (e.g. ferrihydrite and lepidocrocite) by hydroxylamine–HCl, reducible oxides (e.g. goethite and hematite) by dithionite–citrate, and magnetite by ammonium oxalate. Subsequently, the samples were repeatedly oxidized, heated and purified via Fe precipitation and column chromatography. The method was applied to surface sediments collected from the North Sea, south of the island of Helgoland. The acetate-soluble fraction (targeting siderite and ankerite) showed a pronounced downcore δ56Fe trend. This iron pool was most depleted in 56Fe close to the sediment–water interface, similar to trends observed for pore-water Fe(II). We interpret this pool as surface-reduced Fe(II), rather than siderite or ankerite, that was open to electron and atom exchange with the oxide surface. Common extractions using 0.5 M HCl or Na-dithionite alone may not resolve such trends, as they dissolve iron from isotopically distinct pools leading to a mixed signal. Na-dithionite leaching alone, for example, targets the sum of reducible Fe oxides that potentially differ in their isotopic fingerprint. Hence, the development of a sequential extraction Fe isotope protocol provides a new opportunity for detailed study of the behavior of iron in a wide range of environmental settings.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , isiRev
    Format: application/pdf
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 108
    Publication Date: 2016-02-12
    Description: The focus of this research has been on detecting changes in lake areas, vegetation, land surface temperatures, and the area covered by snow, using data from remote sensing. The study area covers the main (central) part of the Lena River catchment in the Yakutia region of Siberia (Russia), extending from east of Yakutsk to the central Siberian Plateau, and from the southern Lena River to north of the Vilyui River. Approximately 90% of the area is underlain by continuous permafrost. Remote sensing products were used to analyze changes in water bodies, land surface temperature (LST), and leaf area index (LAI), as well as the occurrence and extent of forest fires, and the area and duration of snow cover. The remote sensing analyses (for LST, snow cover, LAI, and fire) were based on MODIS–derived NASA products (250–1000 m) for 2000 to 2011. Changes in water bodies were calculated from two mosaics of (USGS) Landsat (30 m) satellite images from 2002 and 2009. Within the study area's 315,000 km2 the total area covered by lakes increased by 17.9% between 2002 and 2009, but this increase varied in different parts of the study area, ranging between 11% and 42%. The land surface temperatures showed a consistent warming trend, with an average increase of about 0.12 °C/year. The average rate of warming during the April–May transition period was 0.17 °C/year and 0.19 °C/year in the September–October period, but ranged up to 0.49 °C/year during September–October. Regional differences in the rates of land surface temperature change, and possible reasons for the temperature changes, are discussed with respect to changes in the land cover. Our analysis of a broad spectrum of variables over the study area suggests that the spring warming trend is very likely to be due to changes in the area covered by snow. The warming trend observed in fall does not, however, appear to be directly related to any changes in the area of snow cover, or to the atmospheric conditions, or to the proportion of the land surface that is covered by water (i.e., to wetting and drying). Supplementary data (original data, digitized version of the maps, metadata) are archived under PANGAEA (http://dx.doi.org/10.1594/PANGAEA.855124).
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , isiRev
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 109
    Publication Date: 2016-06-23
    Description: The Southern Ocean (SO) is a major sink for anthropogenic atmospheric carbon dioxide (CO2), potentially harbouring even greater potential for additional sequestration of CO2 through enhanced phytoplankton productivity. In the SO, primary productivity is primarily driven by bottom up processes (physical and chemical conditions) which are spatially and temporally heterogeneous. Due to a paucity of trace metals (such as iron) and high variability in light, much of the SO is characterised by an ecological paradox of high macronutrient concentrations yet uncharacteristically low chlorophyll concentrations. It is expected that with increased anthropogenic CO2 emissions and the coincident warming, the major physical and chemical process that govern the SO will alter, influencing the biological capacity and functioning of the ecosystem. This review focuses on the SO primary producers and the bottom up processes that underpin their health and productivity. It looks at the major physico-chemical drivers of change in the SO, and based on current physiological knowledge, explores how these changes will likely manifest in phytoplankton, specifically, what are the physiological changes and floristic shifts that are likely to ensue and how this may translate into changes in the carbon sink capacity, net primary productivity and functionality of the SO.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , isiRev
    Format: application/pdf
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 110
    Publication Date: 2018-02-16
    Description: We analyze inter-annual changes of marine observations at Helgoland Roads (nitrate, phosphate, salinity, Secchi depth) in relation to hydro-climatic conditions and Elbe River discharge as potential drivers. Focusing on mean spring conditions we explore graphical covariance selection modeling as a means to both identify and represent the structure of parameter interactions. While river discharge is able to modify spatial distributions and related gradients in the station's vicinity, atmospherically forced regional transport patterns govern the time dependent local conditions the station is actually exposed to. A model consistent with the data confirms the interplay of the two forcing factors for observations at station Helgoland Roads. Introducing water temperature as a third predictor of inter-annual variability does not much improve the model. Comparing a Helgoland Roads dependence graph with corresponding graphs for other stations or related model simulations, for instance, could help identify differences in underlying mechanisms without referring to specific realizations of external forcing. With regard to prediction, supplementary numerical experiments reveal that imposing constraints on parameter interactions can reduce the chance of fitting regression models to noise.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , isiRev
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 111
    Publication Date: 2017-10-17
    Description: A new airborne remote sensing approach to estimate an upper limit of the direct sea-air methane emission flux was applied over the 22/4b blowout site located at N57.92°, E1.63° in the North Sea. Passive remote sensing data using sunglint/sunglitter geometry were collected during instrumental tests with the Methane Airborne MAPper \u2013 MAMAP \u2013 instrument installed aboard the Alfred Wegener Institute (AWI) Polar-5 aircraft on 3. June 2011. MAMAP is a passive short wave infrared (SWIR) remote sensing spectrometer for airborne measurements and retrieval of the atmospheric column-averaged dry air mole fractions of methane (XCH4) and carbon dioxide (XCO2). In addition to MAMAP a fast CH4 in-situ analyzer (Los-Gatos Research Inc. RMT-200), two 5-hole turbulence probes and the Polar-5 basic sensor suite comprising different temperature, pressure, humidity and camera sensors were installed aboard the aircraft. The collected MAMAP remote sensing data acquired in the vicinity of the 22/4b blowout site showed no detectable increase in the derived XCH4 (with respect to the atmospheric background). Based on the absence of a detectable XCH4 column increase, an approximate top-down upper-limit for the direct atmospheric 22/4b blowout CH4 emissions from the main bubble plume of less than 10 ktCH4/yr has been derived. The constraint has been determined by comparing XCH4 information derived by the remote sensing measurements with results obtained from a Gaussian plume forward model simulation taking into account the actual flight track, the instrument sensitivity and measurement geometry, as well as the prevailing atmospheric conditions.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , isiRev
    Format: application/pdf
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 112
    Publication Date: 2016-04-15
    Description: In this study, we describe a de novo sequencing and assembly of the spleen transcriptome of Lepidonotothen nudifrons, a notothenioid fish widely distributed around the Antarctic Peninsula and the Scotia Arc. Sequences were generated on an Illumina MiSeq system and assembled to a total of 112,477 transcripts. Putative functional annotation was possible for more than 34% of the transcripts. This data will be relevant for future studies targeting the erythrocyte turnover, oxygen transport mechanism and immune system, which are key functional traits to investigate cold adaptation and thermal sensitivity of Antarctic notothenioids.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , isiRev
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 113
    facet.materialart.
    Unknown
    Elsevier
    In:  EPIC3Chemical Geology, Elsevier, 392, pp. 32-42, ISSN: 0009-2541
    Publication Date: 2014-12-03
    Description: In this study we introduce a new in situ technique which allows the determination of the boron isotopic composition and B/Ca ratios simultaneously at the nanogram level using a combination of optical emission spectroscopy and multiple ion counting MC ICP-MS with laser ablation. This technique offers a new application in the paleo-field of oceanography and climatology since small samples like e.g. single foraminiferal shells can be analyzed. The simultaneous determination of the boron isotopic composition and B/Ca ratios provides two independent proxies which allow the reconstruction of the full carbonate system. To test the new technique we performed measurements on the cultured, benthic foraminifer Amphistegina lessonii. Our results yielded an average boron isotopic composition δ11B = 18.0 ± 0.83‰ (SD) with an average internal precision of 0.52‰ (RSE). The boron concentration was 53 ± 7 μg/g (SD). These results agree with the range reported in the literature. The reconstructed mean pH value is in excellent agreement with the measured pH of the seawater in which the foraminifers grew. The analysis of a foraminifer consumed approximately 1200 ng calcium carbonate containing ca. 0.06 ng boron. Compared to bulk analytical methods, this new technique requires less material and reduces the time for sample preparation.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , isiRev
    Format: application/pdf
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 114
    Publication Date: 2015-01-30
    Description: Particles determine the residence time of many dissolved elements in seawater. Although a substantial number of field studies were conducted in the framework of major oceanographic programs as GEOSECS and JGOFS, knowledge about particle dynamics is still scarce. Moreover, the particulate trace metal behavior remains largely unknown. The GEOSECS sampling strategy during the 1970s focused on large sections across oceanic basins, where particles were collected by membrane filtration after Niskin bottle sampling, biasing the sampling toward the small particle pool. Late in this period, the first in situ pumps allowing large volume sampling were also developed. During the 1990s, JGOFS focused on the quantifi- cation of the ‘‘exported carbon flux’’ and its seasonal variability in representative biogeochemical prov- inces of the ocean, mostly using sediment trap deployments. Although scarce and discrete in time and space, these pioneering studies allowed an understanding of the basic fate of marine particles. This understanding improved considerably, especially when the analysis of oceanic tracers such as natural radionuclides allowed the first quantification of processes such as dissolved-particle exchange and par- ticle settling velocities. Because the GEOTRACES program emphasizes the importance of collecting, char- acterizing and analyzing marine particles, this paper reflects our present understanding of the sources, fate and sinks of oceanic particles at the early stages of the program.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , isiRev
    Format: application/pdf
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 115
    Publication Date: 2015-10-12
    Description: The comparative analysis of marine litter in different marine compartments has rarely been attempted. In this study, long-term time series of marine litter abundance on the seafloor and on the coast, both from the southeastern North Sea, were analyzed for temporal trends and correlations. On four beach sections of 100 m length, mean abundances of total beach litter collected four times a year from 2002 to 2008 varied between 105 and 435 items. Mean densities of total inorganic litter on the seafloor amounted to 10.6 ± 9.7 kg km−2 in the offshore region (2001–2010) and 13.7 ± 12.6 kg km−2 in the Wadden Sea (1998–2007), respectively. In the offshore region, there was no significant long-term trend, while in the Wadden Sea, densities of marine litter declined significantly. Correlations between time series were weak, indicating different sources and transport processes responsible for compositions of beach litter and litter on the seafloor. Decreases in inputs from fisheries and substantial export due to resuspension are discussed as reasons for the decrease in litter on the seafloor in the Wadden Sea.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , peerRev
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 116
    Publication Date: 2015-04-21
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , isiRev
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 117
    Publication Date: 2017-06-02
    Description: Ecological systems depend on both constraints and historical contingencies, both of which shape their present observable system state. In contrast to ahistorical systems, which are governed solely by constraints (i.e. laws), historical systems and their dynamics can be understood only if properly described, in the course of time. Describing these dynamics and understanding long-term variability can be seen as the mission of long time series measuring not only simple abiotic features but also complex biological variables, such as species diversity and abundances, allowing deep insights in the functioning of food webs and ecosystems in general. Long time-series are irreplaceable for understanding change, and cruicially inherent system variability and thus envisaging future scenarios. This nonewithstanding, current policies in funding and evaluating scientific research discourage the maintenance of long termseries, despite a clear need for long-term strategies to cope with climate change. Timeseries are cruicial for a pursuit of the much invoked Ecosystem Approach and to the passage from simple monitoring programmes large-scale and long-term Earth observatories – thus promoting a better understanding of the causes and effects of change in ecosystems. The few ongoing long timeseries in European waters must be integrated and networked so as to facilitate the formation of nodes of a series of observatories which, together, should allow the long-term management of the features and characteristics of European waters. Human capacity building in this region of expertise and a stronger societal involvement are also urgently needed, since the expertise in recognizing and describing species and therefore recording them reliably in the context of timeseries is rapidly vanishing from the European Scientific community.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , isiRev
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 118
    Publication Date: 2020-07-24
    Description: The thermal state of polar continental crust plays a crucial role for understanding the stability and thickness of large ice sheets, the visco-elastic response of the solid Earth due to unloading when large ice caps melt and, in turn, the accuracy of future sea-level rise prediction. Various studies demonstrate the need for precise measurements and estimation of geothermal heat flow (GHF) in Antarctica for better constrained boundary conditions to enhance the ice sheet model performance. This study provides ground-truth for regional indirect GHF estimates in the Amundsen Sea Embayment, which is part of the West Antarctic Rift System, by presenting in situ temperature measurements in continental shelf sediments. Our results show regionally elevated and heterogeneous GHF (mean of 65 mWm−2) in the Amundsen Sea Embayment. Considering thermal blanketing effects, induced by inflow of warmer water and sedimentary processes, the estimated GHF ranges between 65 mWm−2and 95 mWm−2.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , isiRev
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 119
    Publication Date: 2019-03-04
    Description: The interaction between ocean warming, hypoxia and hypercapnia, suggested by climate projections, may push an organism earlier to the limits of its thermal tolerance window. In a previous study on juveniles of green abalone (Haliotis fulgens), combined exposure to hypoxia and hypercapnia during heat stress induced a lowered critical thermal maximum (CTmax), indicated by constrained oxygen consumption, muscular spams and loss of attachment. Thus, the present study investigated the cell physiology in foot muscle of H. fulgens juveniles exposed to acute warming (18 °C to 32 °C at +3 °C day−1) under hypoxia (50% air saturation) and hypercapnia (~1000 μatm PCO2), alone and in combination, to decipher the mechanisms leading to functional loss in this tissue. Under exposure to either hypoxia or hypercapnia, citrate synthase (CS) activity decreased with initial warming, in line with thermal compensation, but returned to control levels at 32 °C. The anaerobic enzymes lactate and tauropine dehydrogenase increased only under hypoxia at 32 °C. Under the combined treatment, CS overcame thermal compensation and remained stable overall, indicating active mitochondrial regulation under these conditions. Limited accumulation of anaerobic metabolites indicates unchanged mode of energy production. In all treatments, upregulation of Hsp70 mRNA was observed already at 30 °C. However, lack of evidence for Hsp70 protein accumulation provides only limited support to thermal denaturation of proteins. We conclude that under combined hypoxia and hypercapnia, metabolic depression allowed the H. fulgens musculature to retain an aerobic mode of metabolism in response to warming but may have contributed to functional loss. Keywords: 1H NMR spectroscopy; Citrate synthase; CTmax; Hsp70; Lactate dehydrogenase; Tauropine; Tauropine dehydrogenase
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , isiRev
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 120
    Publication Date: 2019-03-26
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , isiRev
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 121
    facet.materialart.
    Unknown
    Elsevier
    In:  EPIC3Encyclopedia of Ocean Sciences, Encyclopedia of Ocean Sciences, Third Edition, Vol 1, Elsevier, 10 p., pp. 235-244, ISBN: 978-0-12-813081-0
    Publication Date: 2019-05-20
    Repository Name: EPIC Alfred Wegener Institut
    Type: Inbook , peerRev
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 122
    Publication Date: 2019-10-04
    Description: The region of the Filchner Outflow System (FOS) in the southeastern Weddell Sea is characterized by intensive and complex interactions of different water masses. Dense Ice Shelf Water (ISW) emerging from beneath the ice shelf cavities on the continental shelf, meets Modified Warm Deep Water (MWDW) originating from the Antarctic Circumpolar Current at the sill of the Filchner Trough. These hydrographic features convert the FOS into an oceanographic key region, which may also show enhanced biological productivity and corresponding aggregations of marine top predators. In this context, six adult Weddell seals (Leptonychotes weddellii) were instrumented with CTD-combined satellite relay data loggers in austral summer 2014. By means of these long-term data loggers we aimed at investigating the influence of environmental conditions on the seals’ foraging behaviour throughout seasons, focussing on the local oceanographic features. Weddell seals performed pelagic and demersal dives, mainly on the continental shelf, where they presumably exploited the abundant bentho-pelagic fish fauna. Diurnal and seasonal variations in light availability affected foraging activities. MWDW was associated with increased foraging effort. However, we observed differences in movements and habitat use between two different groups of Weddell seals. Seals tagged in the pack ice of the FOS focussed their foraging activities to the western and, partly, eastern flank of the Filchner Trough, which coincides with inflow pathways of MWDW. In contrast, Weddell seals tagged on the coastal fast ice exhibited typical central-place foraging and utilized resources close to their colony. High foraging effort in MWDW and high utilization of areas associated with an inflow of MWDW raise questions on the underlying biological features. This emphasizes the importance of further interdisciplinary ecological investigations in the near future, as the FOS may soon be impacted by predicted climatic changes.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , isiRev
    Format: application/pdf
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 123
    facet.materialart.
    Unknown
    Elsevier
    In:  EPIC3Sub-Seasonal to Seasonal Prediction: The Gap Between Weather and Climate Forecasting, Sub-Seasonal to Seasonal Prediction: The Gap Between Weather and Climate Forecasting, Elsevier, 21 p., pp. 201-221
    Publication Date: 2018-12-03
    Description: The chapter presents a review of sea ice properties in relation to sub-seasonal to seasonal (S2S) predictions in the Arctic and the Antarctic. After a concise presentation of the main processes governing sea ice physics, the spatial distribution, seasonal cycle, and variability of sea ice in both poles are described. Using a variety of observations and model reconstructions of the four recent decades, the memory of the main descriptors of the sea ice state is quantified. In both the Arctic and the Antarctic, persistence of the sea ice areal properties emerges as the primarily source of sea ice sub-seasonal predictability, with strong dependence on season. Further memory can be obtained from reemergence mechanisms, implying processes internal to sea ice and coupling with the atmosphere and the ocean. In addition, lessons from modeling studies are addressed in terms of potential sea ice predictability and actual predictive skill. Finally, the chapter provides an overview of our understanding of the possible role of sea ice as a source of S2S atmospheric predictability, both in the polar regions and beyond.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Inbook , peerRev
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 124
    Publication Date: 2018-11-19
    Description: The present study is based on a series of two-dimensional simple shear numerical simulations of two-phase non-linear viscous materials used to investigate the mechanical behaviour of two-phase aggregates representing partially molten rocks. These simulations couple viscoplastic deformation with dynamic recrystallisation (DRX). The aim of these simulations is to investigate the competition between deformation and recrystallisation, and how they affect the mechanical behaviour and resulting microstructures of the deforming material. We systematically vary the melt to solid rock ratio, the dihedral angle of melt and the ratio of DRX vs. deformation. The results show that the amount of DRX and the dihedral angle have a first-order impact on the bulk rheology and the melt distribution in the aggregate. The numerical results allow defining two regimes, depending on the relative contribution of deformation and DRX: (1) a deformation-dominated regime at high strain rates (i.e., with a low ratio of recrystallisation vs. viscoplastic deformation) and (2) a recrystallisation-dominated regime at low strain rates (i.e., with a high ratio of recrystallisation vs. viscoplastic deformation). The first case results in systems bearing large connected melt pockets whose viscous flow controls the deformation of the aggregate, while disconnected smaller melt pockets develop in models where dynamic recrystallisation dominates. The results of this study allow us to better understand the development of connected melt pockets, which may focus melt flow. The distribution of the melt phase plays a key role in the formation of larger-scale melt-enriched shear bands, which in turn has a direct influence on large-scale convective mantle flow.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , isiRev
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 125
    Publication Date: 2019-08-12
    Description: Numerical models are important tools for understanding the processes and feedbacks in the Earth system, including those involving changes in atmospheric CO2 (CO2,atm) concentrations. Here, we compile 55 published model studies (consisting of 778 individual simulations) that assess the impact of six forcing mechanisms on millennial-scale CO2,atm variations: changes in freshwater supply to the North Atlantic and Southern Ocean, the strength and position of the southern-hemisphere westerlies, Antarctic sea ice extent, and aeolian dust fluxes. We generally find agreement on the direction of simulated CO2,atm change across simulations, but the amplitude of change is inconsistent, primarily due to the different complexities of the model representation of Earth system processes. When freshwater is added to the North Atlantic, a reduced Atlantic Meridional Overturning Circulation (AMOC) is generally accompanied by an increase in Southern Ocean- and Pacific overturning, reduced Antarctic sea ice extent, spatially varying export production, and changes in carbon storage in the Atlantic (rising), in other ocean basins (generally decreasing) and on land (more varied). Positive or negative CO2,atm changes are simulated during AMOC minima due to a spatially and temporally varying dominance of individual terrestrial and oceanic drivers (and compensating effects between them) across the different models. In contrast, AMOC recoveries are often accompanied by rising CO2,atm levels, which are mostly driven by ocean carbon release (albeit from different regions). The magnitude of simulated CO2,atm rise broadly scales with the duration of the AMOC perturbation (i.e., the stadial length). When freshwater is added to the Southern Ocean, reduced deep-ocean ventilation drives a CO2,atm drop via reduced carbon release from the Southern Ocean. Although the impacts of shifted southern-hemisphere westerlies are inconsistent across model simulations, their intensification raises CO2,atm via enhanced Southern Ocean Ekman pumping. Increased supply of aeolian dust to the ocean, and thus iron fertilisation of marine productivity, consistently lowers modelled CO2,atm concentrations via more efficient nutrient utilisation. The magni- tude of CO2,atm change in response to dust flux variations, however, largely depends on the complexity of models' marine ecosystem and iron cycle. This especially applies to simulations forced by Antarctic sea ice changes, in which the direction of simulated CO2,atm change varies greatly across model hierarchies. Our compilation highlights that no single (forcing) mechanism can explain observed past millennial-scale CO2,atm variability, and identifies important future needs in coupled carbon cycle-climate modelling to better understand the mechanisms governing CO2,atm changes in the past.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , isiRev
    Format: application/pdf
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 126
    facet.materialart.
    Unknown
    Elsevier
    In:  EPIC3Journal of Plant Physiology, Elsevier, 173, pp. 41-50, ISSN: 01761617
    Publication Date: 2017-06-05
    Description: The combined effects of ocean acidification and ultraviolet radiation (UVR) have been studied in the kelps Alaria esculenta and Saccharina latissima from Kongsfjorden (Svalbard), two major components of the Arctic macroalgal community, in order to assess their potential to thrive in a changing environment. Overall results revealed synergistic effects, however with a different amplitude in the respective species. Changes in growth, internal N, C:N ratio, pigments, optimum quantum yield (Fv/Fm) and electron transport rates (ETR) following CO2 enrichment and/or UVR were generally more pronounced in S. latissima than in A. esculenta. The highest growth rates were recorded under simultaneous CO2 enrichment and UVR in both species. UVR-mediated changes in pigment content were partially prevented under elevated CO2 in both species. Similarly, UVR led to increased photosynthetic efficiency (α) and ETR only if CO2 was not elevated in A. esculenta and even under high CO2 in S. latissima. Increased CO2 did not inhibit external carbonic anhydrase (eCA) activity in the short-term but in the mid-term, indicating a control through acclimation of photosynthesis rather than a direct inhibition of eCA by CO2. The higher benefit of simultaneous CO2 enrichment and UVR for S. latissima respect to A. esculenta seems to involve higher C and N assimilation efficiency, as well as higher ETR, despite a more sensitive Fv/Fm. The differential responses shown by these two species indicate that ongoing ocean acidification and UVR could potentially change the dominance at lower depths (4–6 m), which will eventually drive changes at the community level in the Arctic coastal ecosystem. These results support an existing consideration of S. latissima as a winner species in the global change scenario.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , isiRev
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 127
    Publication Date: 2014-12-09
    Description: Steinthorsdottir et al. (2014) used a previously published stomata-based CO2 record (Steinthorsdottir et al., 2013) to argue for a large, abrupt change in atmospheric carbon dioxide at the onset of the Younger Dryas (YD) cold interval. Their record implies a 50 ppm CO2 rise followed by a decline by 100 ppm. They compare their results to a hypothetical and highly unlikely simulation sce- nario in which vertical mixing in the ocean is increased by a factor of 100 and wind strength by a factor of 7. They furthermore compare their stomata-based CO2 record with the ice core CO2 re- cord derived from EPICA Dome C (EDC). We here question their interpretation.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , isiRev
    Format: application/pdf
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 128
    Publication Date: 2017-06-14
    Description: We compare and contrast the ecological impacts of atmospheric and oceanic circulation patterns on polar and sub-polar marine ecosystems. Circulation patterns differ strikingly between the north and south. Meridional circulation in the north provides connections between the sub-Arctic and Arctic despite the presence of encircling continental landmasses, whereas annular circulation patterns in the south tend to isolate Antarctic surface waters from those in the north. These differences influence fundamental aspects of the polar ecosystems from the amount, thickness and duration of sea ice, to the types of organisms, and the ecology of zooplankton, fish, seabirds and marine mammals. Meridional flows in both the North Pacific and the North Atlantic oceans transport heat, nutrients, and plankton northward into the Chukchi Sea, the Barents Sea, and the seas off the west coast of Greenland. In the North Atlantic, the advected heat warms the waters of the southern Barents Sea and, with advected nutrients and plankton, supports immense biomasses of fish, seabirds and marine mammals. On the Pacific side of the Arctic, cold waters flowing northward across the northern Bering and Chukchi seas during winter and spring limit the ability of boreal fish species to take advantage of high seasonal production there. Southward flow of cold Arctic waters into sub-Arctic regions of the North Atlantic occurs mainly through Fram Strait with less through the Barents Sea and the Canadian Archipelago. In the Pacific, the transport of Arctic waters and plankton southward through Bering Strait is minimal. In the Southern Ocean, the Antarctic Circumpolar Current and its associated fronts are barriers to the southward dispersal of plankton and pelagic fishes from sub-Antarctic waters, with the consequent evolution of Antarctic zooplankton and fish species largely occurring in isolation from those to the north. The Antarctic Circumpolar Current also disperses biota throughout the Southern Ocean, and as a result, the biota tends to be similar within a given broad latitudinal band. South of the Southern Boundary of the ACC, there is a large-scale divergence that brings nutrient-rich water to the surface. This divergence, along with more localized upwelling regions and deep vertical convection in winter, generates elevated nutrient levels throughout the Antarctic at the end of austral winter. However, such elevated nutrient levels do not support elevated phytoplankton productivity through the entire Southern Ocean, as iron concentrations are rapidly removed to limiting levels by spring blooms in deep waters. However, coastal regions, with the upward mixing of iron, maintain greatly enhanced rates of production, especially in coastal polynyas. In these coastal areas, elevated primary production supports large biomasses of zooplankton, fish, seabirds, and mammals. As climate warming affects these advective processes and their heat content, there will likely be major changes in the distribution and abundance of polar biota, in particular the biota dependent on sea ice.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , isiRev
    Format: application/pdf
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 129
    Publication Date: 2015-09-28
    Description: Abstract The northern Antarctic Peninsula is one of the fastest changing regions on Earth. The disintegration of the Larsen-A Ice Shelf in 1995 caused tributary glaciers to adjust by speeding up, surface lowering, and overall increased ice-mass discharge. In this study, we investigate the temporal variation of these changes at the Dinsmoor–Bombardier–Edgeworth glacier system by analyzing dense time series from various spaceborne and airborne Earth observation missions. Precollapse ice shelf conditions and subsequent adjustments through 2014 were covered. Our results show a response of the glacier system some months after the breakup, reaching maximum surface velocities at the glacier front of up to 8.8 m/d in 1999 and a subsequent decrease to ∼1.5 m/d in 2014. Using a dense time series of interferometrically derived TanDEM-X digital elevation models and photogrammetric data, an exponential function was fitted for the decrease in surface elevation. Elevation changes in areas below 1000 m a.s.l. amounted to at least 130 ± 15 m between 1995 and 2014, with change rates of ∼3.15 m/a between 2003 and 2008. Current change rates (2010–2014) are in the range of 1.7 m/a. Mass imbalances were computed with different scenarios of boundary conditions. The most plausible results amount to − 40.7 ± 3.9 Gt . The contribution to sea level rise was estimated to be 18.8 ± 1.8 Gt , corresponding to a 0.052 ± 0.005 mm sea level equivalent, for the period 1995–2014. Our analysis and scenario considerations revealed that major uncertainties still exist due to insufficiently accurate ice-thickness information. The second largest uncertainty in the computations was the glacier surface mass balance, which is still poorly known. Our time series analysis facilitates an improved comparison with {GRACE} data and as input to modeling of glacio-isostatic uplift in this region. The study contributed to a better understanding of how glacier systems adjust to ice shelf disintegration.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , isiRev
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 130
    Publication Date: 2020-02-17
    Description: The accelerated warming of the Arctic climate may alter the local and regional surface energy balances, for which changing land surface temperatures (LSTs) are a key indicator. Modeling current and anticipated changes in the surface energy balance requires an understanding of the spatio-temporal interactions between LSTs and land cover, both of which can be monitored globally by measurements from space. This paper investigates the accuracy of the MODIS LST/Emissivity Daily L3 Global 1 km V005 product and its spatio-temporal sensitivity to land surface properties in a Canadian High Arctic permafrost landscape. The land cover ranged from fully vegetated wet sedge tundra to barren rock. MODIS LSTs were compared with in situ radiometer measurements from wet tundra areas collected over a 2-year period from July 2008 to July 2010 including both summer and winter conditions. The accuracy of the MODIS LSTs was − 1.1 °C with a root mean square error of 3.9 °C over the entire observation period. Agreement was lowest during the freeze-back periods where MODIS LST showed a cold bias likely due to the overrepresentation of clear-sky conditions. A multi-year analysis of LST spatial anomalies, i.e., the difference between MODIS LSTs and the MODIS LST regional mean, revealed a robust spatio-temporal pattern. Highest variability in LST anomalies was found during freeze-up and thaw periods as well as for open water surface in early summer due to the presence or absence of snow or ice. The summer anomaly pattern was similar for all three years despite strong differences in precipitation, air temperature and net radiation. Summer periods with regional mean LSTs above 5.0 °C showed the greatest spatial diversity with four distinct 2.0 °C classes. Summer anomalies ranged from − 4.5 °C to 2.6 °C with an average standard deviation of 1.8 °C. Dry ridge areas heated up the most, while wetland areas and dry areas of sparsely vegetated bedrock with a high albedo remained coolest. The observed summer LST anomalies can be used as a baseline against which to evaluate both past and future changes in land surface properties that relate to the surface energy balance. Summer anomaly classes mainly reflected a combination of albedo and surface wetness. The potential to use this tool to monitor surface drying and wetting in the Arctic should therefore be further explored. A multi-sensor approach combining thermal satellite measurements with optical and radar imagery promises to be an effective tool for a dynamic, process-based ecosystem monitoring scheme.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , peerRev
    Format: application/pdf
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 131
    Publication Date: 2016-03-17
    Description: Forests worldwide are threatened by various environmental and anthropogenic hazards, especially tropical forests. Knowledge on the impacts of these hazards on forest structure and dynamics has been compiled in empirical studies. However, the results of these studies are often not sufficient for long-term projections and extrapolations to large spatial scales especially for unprecedented environmental conditions, which require both the identification and understanding of key underlying processes. Forest models bridge this gap by incorporating multiple ecological processes in a dynamic framework (i.e. including a realistic model structure) and addressing the complexity of forest ecosystems. Here, we describe the evolution of the individual-based and process-based forest gap model FORMIND and its application to tropical forests. At its core, the model includes physiological processes on tree level (photosynthesis, respiration, tree growth, mortality, regeneration, competition). During the past two decades, FORMIND has been used to address various scientific questions arising from different forest types by continuously extending the model structure. The model applications thus provided understanding in three main aspects: (1) the grouping of single tree species into plant functional types is a successful approach to reduce complexity in vegetation models, (2) structural realism was necessary to analyze impacts of natural and anthropogenic disturbances such as logging, fragmentation, or drought, and (3) complex ecological processes such as carbon fluxes in tropical forests – starting from the individual tree level up to the entire forest ecosystem – can be explored as a function of forest structure, species composition and disturbance regime. Overall, this review shows how the evolution of long-term modelling projects not only provides scientific understanding of forest ecosystems, but also provides benefits for ecological theory and empirical study design.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , isiRev
    Format: application/pdf
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 132
    Publication Date: 2016-05-02
    Description: Recent declines in ice shelf and sea ice extent experienced in polar regions highlight the importance of evaluating variations in local weather patterns in response to climate change. Airborne mineral particles (dust) transported through the atmosphere and deposited on ice sheets and glaciers in Antarctica and Greenland can provide a robust set of tools for resolving the evolution of climatic systems through time. Here we present the first high time resolution radiogenic isotope (strontium and neodymium) data for Holocene dust in a coastal East Antarctic ice core, accompanied by rare earth element composition, dust concentration, and particle size distribution during the last deglaciation. We aim to use these combined ice core data to determine dust provenance, with variations indicative of shifts in either dust production, sources, and/or transport pathways. We analyzed a series of 17 samples from the Taylor Dome (77◦47'47''S, 158◦43'26''E) ice core, 113–391m in depth from 1.1–31.4ka. Radiogenic isotopic and rare earth element compositions of dust during the last glacial period are in good agreement with previously measured East Antarctic ice core dust records. In contrast, the Holocene dust dataset displays a broad range in isotopic and rare earth element compositions, suggesting a shift from long-range transported dust to a more variable, local input that may be linked to the retreat of the Ross Ice Shelf during the last deglaciation. Observed changes in the dust cycle inferred from a coastal East Antarctic ice core can thus be used to infer an evolving local climate.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , isiRev
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 133
    Publication Date: 2019-03-12
    Description: © The Authors, 2019. This is the author's version of the work and is distributed under the terms of the Creative Commons Attribution-Noncommercial-Share Alike 4.0 International License. The definitive version was published in Marine Pollution Bulletin, 140, (2019):364-373, doi:10.1016/j.marpolbul.2018.12.047.
    Description: Estuaries provide significant cultural ecosystem services, including recreation and tourism. Disruptions of estuarine biogeochemical processes resulting from environmental degradation could interrupt the flow of these services, reducing benefits and diminishing the welfare of local communities. This study focused on recreational shellfishing in Buzzards Bay, Massachusetts (41.55°N, 70.80°W). Relationships among measures of recreational shellfishing, estuarine water quality, and local socioeconomic conditions were tested to understand how the benefits of cultural ecosystem services to local communities might be affected by declining water quality. Transferring estimated economic benefits from an analysis of nearby municipalities, the study finds that increases in Chl a during the 24-year period were associated with losses in recreational shellfishing benefits of $0.08–0.67 million per decade. The approach presented here suggests a more broadly applicable framework for assessing the impacts of changes in coastal ecosystem water quality on the welfare of local communities.
    Description: We would like to thank the Buzzards Bay Coalition, the Buzzards Bay National Estuary Program, and the Massachusetts Department of Marine Fisheries for providing data for this analysis. We thank the 1074 citizen volunteers of the Buzzards Bay Coalition who collected the water quality samples and Mark Rasmussen for his leadership in sustaining the Baywatchers Program. Support for this analysis was provided by the John D. and Catherine T. MacArthur Foundation (Grant no. 14-106159-000-CFP), MIT Sea Grant (subaward number 5710004045), the Johnson Endowment of the WHOI Marine Policy Center, and SCD acknowledges support from the University of Virginia.
    Keywords: Estuarine water quality ; Eutrophication ; Recreational shellfishing ; Cultural ecosystem services ; Economic benefits transfer
    Repository Name: Woods Hole Open Access Server
    Type: Article
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 134
    Publication Date: 2021-08-16
    Description: Estimation of high-resolution terrestrial evapotranspiration (ET) from Landsat data is important in many climatic, hydrologic, and agricultural applications, as it can help bridging the gap between existing coarse-resolution ET products and point-based field measurements. However, there is large uncertainty among existing ET products from Landsat that limit their application. This study presents a simple Taylor skill fusion (STS) method that merges five Landsat-based ET products and directly measured ET from eddy covariance (EC) to improve the global estimation of terrestrial ET. The STS method uses a weighted average of the individual ET products and weights are determined by their Taylor skill scores (S). The validation with site-scale measurements at 206 EC flux towers showed large differences and uncertainties among the five ET products. The merged ET product exhibited the best performance with a decrease in the averaged root-mean-square error (RMSE) by 2–5 W/m2 when compared to the individual products. To evaluate the reliability of the STS method at the regional scale, the weights of the STS method for these five ET products were determined using EC ground-measurements. An example of regional ET mapping demonstrates that the STS-merged ET can effectively integrate the individual Landsat ET products. Our proposed method provides an improved high-resolution ET product for identifying agricultural crop water consumption and providing a diagnostic assessment for global land surface models.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , isiRev
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 135
    Publication Date: 2022-05-25
    Description: © The Author(s), 2014. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Methods in Oceanography 10 (2015): 21–43, doi:10.1016/j.mio.2014.05.001.
    Description: We present an integrated framework for joint estimation and pursuit of dynamic features in the ocean, over large spatial scales and with multiple collaborating vehicles relying on limited communications. Our approach uses ocean model predictions to design closed-loop networked control at short time scales, and the primary innovation is to represent model uncertainty via a projection of ensemble forecasts into local linearized vehicle coordinates. Based on this projection, we identify a stochastic linear time-invariant model for estimation and control design. The methodology accurately decomposes spatial and temporal variations, exploits coupling between sites along the feature, and allows for advanced methods in communication-constrained control. Simulations with three example datasets successfully demonstrate the proof-of-concept.
    Description: The work is supported by the Office of Naval Research, Grant N00014-09-1-0700 and the National Science Foundation, Contract CNS-1212597.
    Keywords: Autonomous underwater vehicles ; Collaborative control ; Feature tracking ; Ensemble forecasts ; Linearization ; System identification
    Repository Name: Woods Hole Open Access Server
    Type: Article
    Format: application/pdf
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 136
    Publication Date: 2022-05-25
    Description: © The Author(s), 2014. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Ecological Modelling 276 (2014): 38–50, doi:10.1016/j.ecolmodel.2014.01.005.
    Description: Sea-level rise and human development pose significant threats to shorebirds, particularly for species that utilize barrier island habitat. The piping plover (Charadrius melodus) is a federally-listed shorebird that nests on barrier islands and rapidly responds to changes in its physical environment, making it an excellent species with which to model how shorebird species may respond to habitat change related to sea-level rise and human development. The uncertainty and complexity in predicting sea-level rise, the responses of barrier island habitats to sea-level rise, and the responses of species to sea-level rise and human development necessitate a modeling approach that can link species to the physical habitat features that will be altered by changes in sea level and human development. We used a Bayesian network framework to develop a model that links piping plover nest presence to the physical features of their nesting habitat on a barrier island that is impacted by sea-level rise and human development, using three years of data (1999, 2002, and 2008) from Assateague Island National Seashore in Maryland. Our model performance results showed that we were able to successfully predict nest presence given a wide range of physical conditions within the model's dataset. We found that model predictions were more successful when the ranges of physical conditions included in model development were varied rather than when those physical conditions were narrow. We also found that all model predictions had fewer false negatives (nests predicted to be absent when they were actually present in the dataset) than false positives (nests predicted to be present when they were actually absent in the dataset), indicating that our model correctly predicted nest presence better than nest absence. These results indicated that our approach of using a Bayesian network to link specific physical features to nest presence will be useful for modeling impacts of sea-level rise or human-related habitat change on barrier islands. We recommend that potential users of this method utilize multiple years of data that represent a wide range of physical conditions in model development, because the model performed less well when constructed using a narrow range of physical conditions. Further, given that there will always be some uncertainty in predictions of future physical habitat conditions related to sea-level rise and/or human development, predictive models will perform best when developed using multiple, varied years of data input.
    Description: Funding for the research presented in this paper was provided by the North Atlantic Landscape Conservation Cooperative and the U.S. Geological Survey.
    Keywords: Bayesian network ; Development ; Habitat ; Piping plover ; Sea-level rise ; Shorebird
    Repository Name: Woods Hole Open Access Server
    Type: Article
    Format: application/pdf
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 137
    Publication Date: 2022-05-25
    Description: © The Author(s), 2015. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Deep Sea Research Part I: Oceanographic Research Papers 100 (2015): 21-33, doi:10.1016/j.dsr.2015.01.010.
    Description: Most of our knowledge about deep-sea habitats is limited to bathyal (200–3000 m) and abyssal depths (3000–6000 m), while relatively little is known about the hadal zone (6000–11,000 m). The basic paradigm for the distribution of deep seafloor biomass suggests that the reduction in biomass and average body size of benthic animals along depth gradients is mainly related to surface productivity and remineralisation of sinking particulate organic carbon with depth. However, there is evidence that this pattern is somewhat reversed in hadal trenches by the funnelling of organic sediments, which would result in increased food availability along the axis of the trenches and towards their deeper regions. Therefore, despite the extreme hydrostatic pressure and remoteness from the pelagic food supply, it is hypothesized that biomass can increase with depth in hadal trenches. We developed a numerical model of gravitational lateral sediment transport along the seafloor as a function of slope, using the Kermadec Trench, near New Zealand, as a test environment. We propose that local topography (at a scale of tens of kilometres) and trench shape can be used to provide useful estimates of local accumulation of food and, therefore, patterns of benthic biomass. Orientation and steepness of local slopes are the drivers of organic sediment accumulation in the model, which result in higher biomass along the axis of the trench, especially in the deepest spots, and lower biomass on the slopes, from which most sediment is removed. The model outputs for the Kermadec Trench are in agreement with observations suggesting the occurrence of a funnelling effect and substantial spatial variability in biomass inside a trench. Further trench surveys will be needed to determine the degree to which seafloor currents are important compared with the gravity-driven transport modelled here. These outputs can also benefit future hadal investigations by highlighting areas of potential biological interest, on which to focus sampling effort. Comprehensive exploration of hadal trenches will, in turn, provide datasets for improving the model parameters and increasing predictive power.
    Description: MCI would also like to thank the University of Southampton, the Natural Environment Research Council (NERC, grant number NEW332003) and the Institute of Marine Engineering, Science & Technology (IMarEST), for supporting his research towards a PhD. We are grateful for the support provided by the National Science Foundation (OCE-1131620 to TMS, JCD, and PHY) to the Hadal Ecosystem Studies (HADES) project to which this paper forms a contribution. Support also came from the Natural Environment Research Council (NERC) and its Marine Environmental Mapping Programme (MAREMAP).
    Keywords: Hadal ecology ; Sediment ; Gravitational transport ; Topography ; Benthic biomass ; Kermadec Trench
    Repository Name: Woods Hole Open Access Server
    Type: Article
    Format: application/pdf
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 138
    Publication Date: 2022-05-25
    Description: © The Author(s), 2013. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Journal of King Saud University - Science 25 (2013): 217–228, doi:10.1016/j.jksus.2013.02.006.
    Description: The degradation of natural fish habitat in the ocean implies lost economic benefits. These value losses often are not measured or anticipated fully, and therefore they are mainly ignored in decisions to develop the coast for industrial or residential purposes. In such circumstances, the ocean habitat and its associated ecosystem are treated as if they are worthless. Measures of actual or potential economic values generated by fisheries in commercial markets can be used to assess a conservative (lower-bound) value of ocean habitat. With this information, one can begin to compare the values of coastal developments to the values of foregone ocean habitat in order to help understand whether development would be justified economically. In this paper, we focus on the economic value associated with the harvesting of commercial fish stocks as a relevant case for the Saudi Arabian portion of the Red Sea. We describe first the conceptual basis behind supply-side approaches to economic valuation. Next we review the literature on the use of these methods for valuing ocean habitat. We provide an example based on recent research assessing the bioeconomic status of the traditional fisheries of the Red Sea in the Kingdom of Saudi Arabia (KSA). We estimate the economic value of ecosystem services provided by the KSA Red Sea coral reefs, finding that annual per-unit values supporting the traditional fisheries only are on the order of $7000/km2. Finally, we develop some recommendations for refining future applications of these methods to the Red Sea environment and for further research.
    Description: This research is based on work supported by Award Nos. USA 00002 and KSA 00011 made by the King Abdullah University of Science and Technology (KAUST).
    Keywords: Ecosystem service ; Supply-side valuation ; Traditional fishery ; Red Sea ; Coral reef ; Bio-economics
    Repository Name: Woods Hole Open Access Server
    Type: Article
    Format: application/pdf
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 139
    Publication Date: 2022-05-25
    Description: © The Author(s), 2013. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Ecological Modelling 261-262 (2013): 43–57, doi:10.1016/j.ecolmodel.2013.04.006.
    Description: Dynamic Green Ocean Models (DGOMs) include different sets of Plankton Functional Types (PFTs) and equations, thus different interactions and food webs. Using four DGOMs (CCSM-BEC, PISCES, NEMURO and PlankTOM5) we explore how predator–prey interactions influence food web dynamics. Using each model's equations and biomass output, interaction strengths (direct and specific) were calculated and the role of zooplankton in modeled food webs examined. In CCSM-BEC the single size-class adaptive zooplankton preys on different phytoplankton groups according to prey availability and food preferences, resulting in a strong top-down control. In PISCES the micro- and meso-zooplankton groups compete for food resources, grazing phytoplankton depending on their availability in a mixture of bottom-up and top-down control. In NEMURO macrozooplankton controls the biomass of other zooplankton PFTs and defines the structure of the food web with a strong top-down control within the zooplankton. In PlankTOM5, competition and predation between micro- and meso-zooplankton along with strong preferences for nanophytoplankton and diatoms, respectively, leads to their mutual exclusion with a mixture of bottom-up and top-down control of the plankton community composition. In each model, the grazing pressure of the zooplankton PFTs and the way it is exerted on their preys may result in the food web dynamics and structure of the model to diverge from the one that was intended when designing the model. Our approach shows that the food web dynamics, in particular the strength of the predator–prey interactions, are driven by the choice of parameters and more specifically the food preferences. Consequently, our findings stress the importance of equation and parameter choice as they define interactions between PFTs and overall food web dynamics (competition, bottom-up or top-down effects). Also, the differences in the simulated food-webs between different models highlight the gap of knowledge for zooplankton rates and predator–prey interactions. In particular, concerted effort is needed to identify the key growth and loss parameters and interactions and quantify them with targeted laboratory experiments in order to bring our understanding of zooplankton at a similar level to phytoplankton.
    Description: This work was supported with funding from Palmer LTER (NSF OPP-0823101) and C-MORE (NSF EF-0424599).
    Keywords: Dynamic Green Ocean Model ; Plankton Functional Types ; Zooplankton ; Food web dynamic ; Predator–prey interactions
    Repository Name: Woods Hole Open Access Server
    Type: Article
    Format: application/pdf
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 140
    Publication Date: 2022-05-25
    Description: © The Author(s), 2013. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Remote Sensing of Environment 135 (2013): 77-91, doi:10.1016/j.rse.2013.03.025.
    Description: Photosynthetic production of organic matter by microscopic oceanic phytoplankton fuels ocean ecosystems and contributes roughly half of the Earth's net primary production. For 13 years, the Sea-viewing Wide Field-of-view Sensor (SeaWiFS) mission provided the first consistent, synoptic observations of global ocean ecosystems. Changes in the surface chlorophyll concentration, the primary biological property retrieved from SeaWiFS, have traditionally been used as a metric for phytoplankton abundance and its distribution largely reflects patterns in vertical nutrient transport. On regional to global scales, chlorophyll concentrations covary with sea surface temperature (SST) because SST changes reflect light and nutrient conditions. However, the ocean may be too complex to be well characterized using a single index such as the chlorophyll concentration. A semi-analytical bio-optical algorithm is used to help interpret regional to global SeaWiFS chlorophyll observations from using three independent, well-validated ocean color data products; the chlorophyll a concentration, absorption by CDM and particulate backscattering. First, we show that observed long-term, global-scale trends in standard chlorophyll retrievals are likely compromised by coincident changes in CDM. Second, we partition the chlorophyll signal into a component due to phytoplankton biomass changes and a component caused by physiological adjustments in intracellular chlorophyll concentrations to changes in mixed layer light levels. We show that biomass changes dominate chlorophyll signals for the high latitude seas and where persistent vertical upwelling is known to occur, while physiological processes dominate chlorophyll variability over much of the tropical and subtropical oceans. The SeaWiFS data set demonstrates complexity in the interpretation of changes in regional to global phytoplankton distributions and illustrates limitations for the assessment of phytoplankton dynamics using chlorophyll retrievals alone.
    Description: The authors would like to acknowledge the NASA Ocean Biology and Biogeochemistry program for its long-term support of satellite ocean color research and the Orbital Sciences Corporation and GeoEye who were responsible for the launch, satellite integration and on-orbit management the SeaWiFS mission.
    Keywords: Ocean color ; SeaWiFS ; Phytoplankton ; Colored dissolved organic matter ; Decadal trends
    Repository Name: Woods Hole Open Access Server
    Type: Article
    Format: application/pdf
    Format: application/msword
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 141
    Publication Date: 2022-05-25
    Description: © The Author(s), 2015. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Agriculture, Ecosystems & Environment 212 (2015): 127-133, doi:10.1016/j.agee.2015.07.005.
    Description: Climate change is causing the intensification of both rainfall and droughts in temperate climatic zones, which will affect soil drying and rewetting cycles and associated processes such as soil greenhouse gas (GHG) fluxes. We investigated the effect of soil rewetting following a prolonged natural drought on soil emissions of nitrous oxide (N2O) and carbon dioxide (CO2) in an agricultural field recently converted from 22 years in the USDA Conservation Reserve Program (CRP). We compared responses to those in a similarly managed field with no CRP history and to a CRP reference field. We additionally compared soil GHG emissions measured by static flux chambers with off-site laboratory analysis versus in situ analysis using a portable quantum cascade laser and infrared gas analyzer. Under growing season drought conditions, average soil N2O fluxes ranged between 0.2 and 0.8 μg N m−2 min−1 and were higher in former CRP soils and unaffected by nitrogen (N) fertilization. After 18 days of drought, a 50 mm rewetting event increased N2O fluxes by 34 and 24 fold respectively in the former CRP and non-CRP soils. Average soil CO2 emissions during drought ranged from 1.1 to 3.1 mg C m−2 min−1 for the three systems. CO2 emissions increased ∼2 fold after the rewetting and were higher from soils with higher C contents. Observations are consistent with the hypothesis that during drought soil N2O emissions are controlled by available C and following rewetting additionally influenced by N availability, whereas soil CO2 emissions are independent of short-term N availability. Finally, soil GHG emissions estimated by off-site and in situ methods were statistically identical.
    Description: Financial support for this work was provided by the DOE Office of Science (DE-FC02-07ER64494) and Office of Energy Efficiency and Renewable Energy (DE-AC05-76RL01830), the US National Science Foundation LTER program (DEB 1027253), and MSU AgBioResearch. J. Tang and M. Cui were supported additionally by NSF/DBI-959333, Brown University seed funding, and the Brown University–Marine Biological Laboratory graduate program in Biological and Environmental Sciences.
    Keywords: Soil carbon ; Conservation reserve program ; N2O methodology ; Corn ; No-till
    Repository Name: Woods Hole Open Access Server
    Type: Article
    Format: application/pdf
    Format: application/msword
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 142
    Publication Date: 2022-05-25
    Description: © The Author(s), 2015. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Deep Sea Research Part II: Topical Studies in Oceanography 118 (2015): 122-135, doi:10.1016/j.dsr2.2015.02.008.
    Description: A coupled biophysical model is used to examine the impact of changes in sea ice and snow cover and nutrient availability on the formation of massive under-ice phytoplankton blooms (MUPBs) in the Chukchi Sea of the Arctic Ocean over the period 1988–2013. The model is able to reproduce the basic features of the ICESCAPE (Impacts of Climate on EcoSystems and Chemistry of the Arctic Pacific Environment) observed MUPB during July 2011. The simulated MUPBs occur every year during 1988–2013, mainly in between mid-June and mid-July. While the simulated under-ice blooms of moderate magnitude are widespread in the Chukchi Sea, MUPBs are less so. On average, the area fraction of MUPBs in the ice-covered areas of the Chukchi Sea during June and July is about 8%, which has been increasing at a rate of 2% yr–1 over 1988–2013. The simulated increase in the area fraction as well as primary productivity and chlorophyll a biomass is linked to an increase in light availability, in response to a decrease in sea ice and snow cover, and an increase in nutrient availability in the upper 100 m of the ocean, in conjunction with an intensification of ocean circulation. Simulated MUPBs are temporally sporadic and spatially patchy because of strong spatiotemporal variations of light and nutrient availability. However, as observed during ICESCAPE, there is a high likelihood that MUPBs may form at the shelf break, where the model simulates enhanced nutrient concentration that is seldom depleted between mid-June and mid-July because of generally robust shelf-break upwelling and other dynamic ocean processes. The occurrence of MUPBs at the shelf break is more frequent in the past decade than in the earlier period because of elevated light availability there. It may be even more frequent in the future if the sea ice and snow cover continues to decline such that light is more available at the shelf break to further boost the formation of MUPBs there.
    Description: This work is supported by the NASA Cryosphere Program and Climate and Biological Response Program and the NSF Office of Polar Programs (Grant Nos. NNX12AB31G; NNX11AO91G; ARC-0901987).
    Keywords: Arctic Ocean ; Chukchi Sea ; Phytoplankton ; Blooms ; Sea ice ; Snow depth ; Light availability ; Nutrient availability
    Repository Name: Woods Hole Open Access Server
    Type: Article
    Format: application/pdf
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 143
    Publication Date: 2022-05-25
    Description: © The Author(s), 2015. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Deep Sea Research Part I: Oceanographic Research Papers 104 (2015): 72-91, doi:10.1016/j.dsr.2015.06.012.
    Description: Nitrogen fixation is an important yet still incompletely constrained component of the marine nitrogen cycle, particularly in the subsurface. A Video Plankton Recorder (VPR) survey in the subtropical North Atlantic found higher than expected Trichodesmium colony abundances at depth, leading to the hypothesis that deep nitrogen fixation in the North Atlantic may have been previously underestimated. Here, Trichodesmium colony abundances and modeled nitrogen fixation from VPR transects completed on two cruises in the tropical and subtropical North Atlantic in fall 2010 and spring 2011 were used to evaluate that hypothesis. A bio-optical model was developed based on carbon-normalized nitrogen fixation rates measured on those cruises. Estimates of colony abundance and nitrogen fixation were similar in magnitude and vertical and geographical distribution to conventional estimates in a recently compiled climatology. Thus, in the mean, VPR-based estimates of volume-specific nitrogen fixation rates at depth in the tropical North Atlantic were not inconsistent with estimates derived from conventional sampling methods. Based on this analysis, if Trichodesmium nitrogen fixation by colonies is underestimated, it is unlikely that it is due to underestimation of deep abundances by conventional sampling methods.
    Description: We gratefully acknowledge support of this research by NSF and NASA. A NASA Earth and Space Science Fellowship supported E. Olson's graduate studies.
    Keywords: Nitrogen fixation ; Trichodesmium spp. ; North Atlantic ; Video Plankton Recorder
    Repository Name: Woods Hole Open Access Server
    Type: Article
    Format: application/pdf
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 144
    Publication Date: 2022-05-25
    Description: This paper is not subject to U.S. copyright. The definitive version was published in Marine and Petroleum Geology 66 (2015): 434-450, doi:10.1016/j.marpetgeo.2015.02.033.
    Description: Natural hydrate-bearing sediments from the Nankai Trough, offshore Japan, were studied using the Pressure Core Characterization Tools (PCCTs) to obtain geomechanical, hydrological, electrical, and biological properties under in situ pressure, temperature, and restored effective stress conditions. Measurement results, combined with index-property data and analytical physics-based models, provide unique insight into hydrate-bearing sediments in situ. Tested cores contain some silty-sands, but are predominantly sandy- and clayey-silts. Hydrate saturations Sh range from 0.15 to 0.74, with significant concentrations in the silty-sands. Wave velocity and flexible-wall permeameter measurements on never-depressurized pressure-core sediments suggest hydrates in the coarser-grained zones, the silty-sands where Sh exceeds 0.4, contribute to soil-skeletal stability and are load-bearing. In the sandy- and clayey-silts, where Sh 〈 0.4, the state of effective stress and stress history are significant factors determining sediment stiffness. Controlled depressurization tests show that hydrate dissociation occurs too quickly to maintain thermodynamic equilibrium, and pressure–temperature conditions track the hydrate stability boundary in pure-water, rather than that in seawater, in spite of both the in situ pore water and the water used to maintain specimen pore pressure prior to dissociation being saline. Hydrate dissociation accompanied with fines migration caused up to 2.4% vertical strain contraction. The first-ever direct shear measurements on never-depressurized pressure-core specimens show hydrate-bearing sediments have higher sediment strength and peak friction angle than post-dissociation sediments, but the residual friction angle remains the same in both cases. Permeability measurements made before and after hydrate dissociation demonstrate that water permeability increases after dissociation, but the gain is limited by the transition from hydrate saturation before dissociation to gas saturation after dissociation. In a proof-of-concept study, sediment microbial communities were successfully extracted and stored under high-pressure, anoxic conditions. Depressurized samples of these extractions were incubated in air, where microbes exhibited temperature-dependent growth rates.
    Description: PCCTs were developed with funding to Georgia Tech from the DOE/Chevron Joint Industry Project (JIP), with additional funds from the Joint Oceanographic Institutions, Inc. The JIP also funded the Georgia Tech participation in Sapporo. USGS participation in Sapporo was funded through a technical assistance agreement with Chevron (TAA-12-2135/CW928359). Some USGS developments on the IPTC were funded under Interagency Agreement DE-FE0002911 with the U.S. Department of Energy, with additional support from the U.S. Geological Survey. Core acquisition and Japanese participation in this study was supported by the Research Consortium for Methane Hydrate Resources in Japan (MH21 Research Consortium) to carry out Japan's Methane Hydrate R&D Program conducted by the Ministry of Economy, Trade and Industry (METI).
    Keywords: Methane hydrate ; Hydrate-bearing sediment ; Nankai Trough ; Physical properties ; Pressure core
    Repository Name: Woods Hole Open Access Server
    Type: Article
    Format: application/pdf
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 145
    Publication Date: 2022-05-25
    Description: © The Author(s), 2016. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Continental Shelf Research 124 (2016): 165-181, doi:10.1016/j.csr.2016.06.005.
    Description: A new hydrographic climatology has been created for the continental shelf region, extending from the Labrador shelf to the Mid-Atlantic Bight. The 0.2-degree climatology combines all available observations of surface and bottom temperature and salinity collected between 1950 and 2010 along with the location, depth and date of these measurements. While climatological studies of surface and bottom temperature and salinity have been presented previously for various regions along the Canadian and U.S. shelves, studies also suggest that all these regions are part of one coherent system. This study focuses on the coherent structure of the mean seasonal cycle of surface and bottom temperature and salinity and its variation along the shelf and upper slope. The seasonal cycle of surface temperature is mainly driven by the surface heat flux and exhibits strong dependency on latitude (r≈−0.9). The amplitude of the seasonal cycle of bottom temperature is rather dependent on the depth, while the spatial distribution of bottom temperature is correlated with latitude. The seasonal cycle of surface salinity is influenced by several components, such as sea-ice on the northern shelves and river discharge in the Gulf of St. Lawrence. The bottom salinity exhibits no clear seasonal cycle, but its spatial distribution is highly correlated with bathymetry, thus Slope Water and its intrusion on the shelf can be identified by its relatively high salinity compared to shallow, fresher shelf water. Two different regimes can be identified, especially on the shelf, separated by the Laurentian Channel: advection influences the phasing of the seasonal cycle of surface salinity and bottom temperature to the north, while in the southern region, river runoff and air-sea heat flux forcing are dominant, especially over the shallower bathymetry.
    Description: Support from NSF OCE PO to Y-OK (OCE-1242989 and OCE-1435602) and SJL (OCE-1332666).
    Keywords: Seasonal climatology ; Temperature ; Salinity ; Dataset ; Shelf
    Repository Name: Woods Hole Open Access Server
    Type: Article
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 146
    Publication Date: 2022-05-25
    Description: © The Author(s), 2016. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Progress in Oceanography 151 (2017): 261–274, doi:10.1016/j.pocean.2016.12.007.
    Description: The southeast subtropical Pacific Ocean was sampled along a zonal transect between the coasts of Chile and Easter Island. This remote area of the world’s ocean presents strong gradients in physical (e.g., temperature, density and light), chemical (e.g., salinity and nutrient concentrations) and microbiological (e.g., cell abundances, biomass and specific growth rates) properties. The goal of this study was to describe the phosphorus (P) dynamics in three main ecosystems along this transect: the upwelling regime off the northern Chilean coast, the oligotrophic area associated with the southeast subtropical Pacific gyre and the transitional area in between these two biomes. We found that inorganic phosphate (Pi) concentrations were high and turnover times were long (〉210 nmol l−1 and 〉31 d, respectively) in the upper water column, along the entire transect. Pi uptake rates in the gyre were low (euphotic layer integrated rates were 0.26 mmol m−2 d−1 in the gyre and 1.28 mmol m−2 d−1 in the upwelling region), yet not only driven by decreases in particle mass or cell abundance (particulate P- and cell- normalized Pi uptake rates in the euphotic layer were ∼1–4 times and ∼3–15 times lower in the gyre than in the upwelling, respectively). However these Pi uptake rates were at or near the maximum Pi uptake velocity (i.e., uptake rates in Pi amended samples were not significantly different from those at ambient concentration: 1.5 and 23.7 nmol l−1 d−1 at 50% PAR in the gyre and upwelling, respectively). Despite the apparent Pi replete conditions, selected dissolved organic P (DOP) compounds were readily hydrolyzed. Nucleotides were the most bioavailable of the DOP substrates tested. Microbes actively assimilated adenosine-5′-triphosphate (ATP) leading to Pi and adenosine incorporation as well as Pi release to the environment. The southeast subtropical Pacific Ocean is a Pi-sufficient environment, yet DOP hydrolytic processes are maintained and contribute to P-cycling across the wide range of environmental conditions present in this ecosystem.
    Description: Funds for this work were provided by the Gordon and Betty Moore Foundation’s Marine Microbiology Initiative (D.M.K., 3794) and the Center for Microbial Oceanography: Research and Education (C-MORE, National Science Foundation, D.M.K., EF0424599).
    Keywords: Phosphorus dynamics ; Microbes ; Stocks ; Fluxes ; Southeast subtropical Pacific Ocean
    Repository Name: Woods Hole Open Access Server
    Type: Article
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 147
    Publication Date: 2022-05-25
    Description: © The Author(s), 2017. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Chemical Geology 453 (2017): 146–168, doi:10.1016/j.chemgeo.2017.01.022.
    Description: Cold-water corals (CWCs) are unique archives of mid-depth ocean chemistry and have been used successfully to reconstruct the neodymium (Nd) isotopic composition of seawater from a number of species. High and variable Nd concentrations in fossil corals however pose the question as to how Nd is incorporated into their skeletons. We here present new results on modern specimens of Desmophyllum dianthus, Balanophyllia malouinensis, and Flabellum curvatum, collected from the Drake Passage, and Madrepora oculata, collected from the North Atlantic. All modern individuals were either collected alive or uranium-series dated to be 〈 500 years old for comparison with local surface sediments and seawater profiles. Modern coral Nd isotopic compositions generally agree with ambient seawater values, which in turn are consistent with previously published seawater analyses, supporting small vertical and lateral Nd isotope gradients in modern Drake Passage waters. Two Balanophyllia malouinensis specimens collected live however deviate by up to 0.6 epsilon units from ambient seawater. We therefore recommend that this species should be treated with caution for the reconstruction of past seawater Nd isotopic compositions. Seventy fossil Drake Passage CWCs were furthermore analysed for their Nd concentrations, revealing a large range from 7.3 to 964.5 ng/g. Samples of the species D. dianthus and Caryophyllia spp. show minor covariation of Nd with 232Th content, utilised to monitor contaminant phases in cleaned coral aragonite. Strong covariations between Nd and Th concentrations are however observed in the species B. malouinensis and G. antarctica. In order to better constrain the source and nature of Nd in the cleaned aragonitic skeletons, a subset of sixteen corals was investigated for its rare earth element (REE) content, as well as major and trace element geochemistry. Our new data provide supporting evidence that the applied cleaning protocol efficiently removes contaminant lithogenic and ferromanganese oxyhydroxide phases. Mass balance calculations and seawater-like REE patterns rule out lithogenic and ferromanganese oxyhydroxide phases as a major contributor to elevated Nd concentrations in coral aragonite. Based on mass balance considerations, geochemical evidence, and previously published independent work by solid-state nuclear magnetic resonance (NMR) spectroscopy, we suggest authigenic phosphate phases as a significant carrier of skeletal Nd. Such a carrier phase could explain sporadic appearance of high Nd concentrations in corals and would be coupled with seawater-derived Nd isotopic compositions, lending further confidence to the application of Nd isotopes as a water mass proxy in CWCs.
    Description: TvdF and TS acknowledge financial support for a bursary by the Grantham Institute of Climate Change and the Environment and a Marie Curie Reintegration grant (IRG 230828), as well as funding from the Leverhulme Trust (RPG-398) and the NERC (NE/N001141/1). Additional financial support was provided to LFR by the USGS-WHOI Co-operative agreement, NSF-ANT grants 0636787 and 80295700, The European Research Council, the Leverhulme Trust and a Marie Curie Reintegration grant. LB was supported by a NOAA/UCAR Climate and Global Change Postdoctoral Fellowship and KJM acknowledges funding from a Marie Curie International Outgoing fellowship (IOF 236962).
    Keywords: Neodymium isotopes ; Rare earth elements ; Cold-water corals ; Seawater ; Sediments ; Drake Passage
    Repository Name: Woods Hole Open Access Server
    Type: Article
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 148
    Publication Date: 2022-05-25
    Description: This paper is not subject to U.S. copyright. The definitive version was published in Continental Shelf Research 138 (2017): 1-18, doi:10.1016/j.csr.2017.02.003.
    Description: Hurricane Sandy was one of the most destructive hurricanes in US history, making landfall on the New Jersey coast on October 30, 2012. Storm impacts included several barrier island breaches, massive coastal erosion, and flooding. While changes to the subaerial landscape are relatively easily observed, storm-induced changes to the adjacent shoreface and inner continental shelf are more difficult to evaluate. These regions provide a framework for the coastal zone, are important for navigation, aggregate resources, marine ecosystems, and coastal evolution. Here we provide unprecedented perspective regarding regional inner continental shelf sediment dynamics based on both observations and numerical modeling over time scales associated with these types of large storm events. Oceanographic conditions and seafloor morphologic changes are evaluated using both a coupled atmospheric-ocean-wave-sediment numerical modeling system that covered spatial scales ranging from the entire US east coast (1000 s of km) to local domains (10 s of km). Additionally, the modeled response for the region offshore of Fire Island, NY was compared to observational analysis from a series of geologic surveys from that location. The geologic investigations conducted in 2011 and 2014 revealed lateral movement of sedimentary structures of distances up to 450 m and in water depths up to 30 m, and vertical changes in sediment thickness greater than 1 m in some locations. The modeling investigations utilize a system with grid refinement designed to simulate oceanographic conditions with progressively increasing resolutions for the entire US East Coast (5-km grid), the New York Bight (700-m grid), and offshore of Fire Island, NY (100-m grid), allowing larger scale dynamics to drive smaller scale coastal changes. Model results in the New York Bight identify maximum storm surge of up to 3 m, surface currents on the order of 2 ms−1 along the New Jersey coast, waves up to 8 m in height, and bottom stresses exceeding 10 Pa. Flow down the Hudson Shelf Valley is shown to result in convergent sediment transport and deposition along its axis. Modeled sediment redistribution along Fire Island showed erosion across the crests of inner shelf sand ridges and sedimentation in adjacent troughs, consistent with the geologic observations.
    Description: This research was funded by the U.S. Geological Survey (USGS), Coastal and Marine Geology Program, and conducted by the Coastal Change Processes Project. This research was supported in part by the Department of the Interior Hurricane Sandy Recovery program.
    Keywords: Shoreface connected sand ridges ; Sediment transport ; Fire Island, NY ; Hurricane Sandy ; Inner shelf ; Numerical modeling
    Repository Name: Woods Hole Open Access Server
    Type: Article
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 149
    Publication Date: 2022-05-25
    Description: © The Author(s), 2016. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Journal of Hydrology: Regional Studies 11 (2017): 219-233, doi:10.1016/j.ejrh.2016.08.003.
    Description: Hydrogeologic controls on seasonal land/sea exchange are investigated in Malibu, California, USA. An assessment of regional groundwater/surface water exchange and associated biogeochemical transport in an intermittently open, coastal lagoon in California is developed using naturally occurring U/Th-series tracers. Nearshore lagoons that are seasonally disconnected from the coastal ocean occupy about 10% of coastal areas worldwide. Lagoon systems often are poorly flushed and thus sensitive to nutrient over-enrichment that can lead to eutrophication, oxygen depletion, and/or pervasive algal blooms. This sensitivity is exacerbated in lagoons that are intermittently closed to surface water exchange with the sea and occur in populous coastal areas. Such estuarine systems are disconnected from the sea during most of the year by wave-built barriers, but during the rainy season these berms can breach, enabling direct water exchange. Using naturally-occurring 222Rn as groundwater tracer, we estimate that groundwater discharge to Malibu Lagoon during open berm conditions was one order of magnitude higher (21 ± 17 cm/day) than during closed berm conditions (1.8 ± 1.4 cm/day). The SGD (submarine groundwater discharge) into nearshore coastal waters at the SurferRider and Colony Malibu was 4.2 cm/day on average. The exported total dissolved nitrogen (TDN) through the berm during closed berm was 1.6 × 10−3 mol/day, whereas during open berm (exported by the Creek) was 3.5 × 103 mol/day. Although these evaluations are specific to the collection campaigns the 2009 and 2010 hydro years, these two distinct hydrologic scenarios play an important role in the seasonality and geochemical impact of land/sea exchange, and highlight the sensitivity of such systems to future impacts such as sea level rise and increasing coastal populations.
    Description: This work was co-funded by the City of Malibu and the U.S. Geological Survey.
    Keywords: Regional groundwater flow ; Submarine groundwater discharge ; Radon ; Hydrologic time series
    Repository Name: Woods Hole Open Access Server
    Type: Article
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 150
    Publication Date: 2022-05-25
    Description: © The Author(s), 2017. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Regional Studies in Marine Science 18 (2018): 1-10, doi:10.1016/j.rsma.2017.12.004.
    Description: The variations of temperature and salinity in the Sudanese coastal zone of the Red Sea are studied for the first time using measurements acquired from survey cruises during 2009–2013 and from a mooring during 2014–2015. The measurements show that temperature and salinity variability above the permanent pycnocline is dominated by seasonal signals, similar in character to seasonal temperature and salinity oscillations observed further north on the eastern side of the Red Sea. Using estimates of heat flux, circulation and horizontal temperature/salinity gradients derived from a number of sources, we determined that the observed seasonal signals of temperature and salinity are not the product of local heat and mass flux alone, but are also due to alongshore advection of waters with spatially varying temperature and salinity. As the temperature and salinity gradients, characterized by warmer and less saline water to the south, exhibit little seasonal variation, the seasonal salinity and temperature variations are closely linked to an observed seasonal oscillation in the along-shore flow, which also has a mean northward component. We find that the inclusion of the advection terms in the heat and mass balance has two principal effects on the computed temperature and salinity series. One is that the steady influx of warmer and less saline water from the south counteracts the long-term trend of declining temperatures and rising salinities computed with only the local surface flux terms, and produces a long-term steady state in temperature and salinity. The second effect is produced by the seasonal alongshore velocity oscillation and most profoundly affects the computed salinity, which shows no seasonal signal without the inclusion of the advective term. In both the observations and computed results, the seasonal salinity signal lags that of temperature by roughly 3 months.
    Description: The SPS surveys were funded by the Norwegian Norad’s Program for Master Studies and organized by IMR–RSU in Port Sudan. The central Red Sea mooring data were acquired as part of a WHOI–KAUST collaboration funded by Award Nos. USA00001, USA00002, and KSA00011 to the WHOI by the KAUST in the Kingdom of Saudi Arabia. The work of I. Skjelvan and A.M. Omar was partly supported by the Research Council of Norway through the MIMT Center for Research-based Innovation. This work is part of a Ph.D. project at GFI–UiB funded by the Norwegian Quota program .
    Keywords: Coastal Red Sea ; Temperature ; Salinity ; Time series ; Seasonality ; Alongshore advection
    Repository Name: Woods Hole Open Access Server
    Type: Article
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 151
    Publication Date: 2022-05-25
    Description: © The Author(s), 2018. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Quaternary Science Reviews 185 (2018): 135-152, doi:10.1016/j.quascirev.2018.02.012.
    Description: The largest coherent cold-water coral (CWC) mound province in the Atlantic Ocean exists along the Mauritanian margin, where up to 100 m high mounds extend over a distance of ∼400 km, arranged in two slope-parallel chains in 400–550 m water depth. Additionally, CWCs are present in the numerous submarine canyons with isolated coral mounds being developed on some canyon flanks. Seventy-seven Uranium-series coral ages were assessed to elucidate the timing of CWC colonisation and coral mound development along the Mauritanian margin for the last ∼120,000 years. Our results show that CWCs were present on the mounds during the Last Interglacial, though in low numbers corresponding to coral mound aggradation rates of 16 cm kyr−1. Most prolific periods for CWC growth are identified for the last glacial and deglaciation, resulting in enhanced mound aggradation (〉1000 cm kyr−1), before mound formation stagnated along the entire margin with the onset of the Holocene. Until today, the Mauritanian mounds are in a dormant state with only scarce CWC growth. In the canyons, live CWCs are abundant since the Late Holocene at least. Thus, the canyons may serve as a refuge to CWCs potentially enabling the observed modest re-colonisation pulse on the mounds along the open slope. The timing and rate of the pre-Holocene coral mound aggradation, and the cessation of mound formation varied between the individual mounds, which was likely the consequence of vertical/lateral changes in water mass structure that placed the mounds near or out of oxygen-depleted waters, respectively.
    Description: This study received funding from and contributes to the DFG-projects "Palaeo-WACOM" (HE 3412/17-1) and "Cold-water coral mound development in a tropical upwelling cell – the great wall of(f) Mauritania" (Ti 706/3-1). A. Freiwald received funding from the Hessian initiative for the development of scientific and economic excellence (LOEWE) at the Biodiversity and Climate Research Centre (BiK-F), Frankfurt, Germany.
    Keywords: Lophelia pertusa ; Coral mound ; Submarine canyon ; Uranium-series dating ; Mound aggradation rate ; Last glacial ; Dissolved oxygen concentration ; South Atlantic Central Water ; Mauritanian margin
    Repository Name: Woods Hole Open Access Server
    Type: Article
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 152
    Publication Date: 2022-05-25
    Description: © The Author(s), 2018. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Remote Sensing of Environment 217 (2018): 126-143, doi:10.1016/j.rse.2018.08.010.
    Description: Diatoms dominate global silica production and export production in the ocean; they form the base of productive food webs and fisheries. Thus, a remote sensing algorithm to identify diatoms has great potential to describe ecological and biogeochemical trends and fluctuations in the surface ocean. Despite the importance of detecting diatoms from remote sensing and the demand for reliable methods of diatom identification, there has not been a systematic evaluation of algorithms that are being applied to this end. The efficacy of these models remains difficult to constrain in part due to limited datasets for validation. In this study, we test a bio-optical algorithm developed by Sathyendranath et al. (2004) to identify diatom dominance from the relationship between ratios of remote sensing reflectance and chlorophyll concentration. We evaluate and refine the original model with data collected at the Martha's Vineyard Coastal Observatory (MVCO), a near-shore location on the New England shelf. We then validated the refined model with data collected in Harpswell Sound, Maine, a site with greater optical complexity than MVCO. At both sites, despite relatively large changes in diatom fraction (0.8–82% of chlorophyll concentration), the magnitude of variability in optical properties due to the dominance or non-dominance of diatoms is less than the variability induced by other absorbing and scattering constituents of the water. While the original model performance was improved through successive re-parameterizations and re-formulations of the absorption and backscattering coefficients, we show that even a model originally parameterized for the Northwest Atlantic and re-parameterized for sites such as MVCO and Harpswell Sound performs poorly in discriminating diatom-dominance from optical properties.
    Description: This work was supported by: a Woods Hole Oceanographic Institution Summer Student Fellowship (NSF REU award #1156952) and a Bowdoin College Grua/O'Connell Research Award to SJK; grants to HMS from NASA (Ocean Biology and Biogeochemistry program and Biodiversity and Ecological Forecasting program), NSF (Ocean Sciences), the Gordon and Betty Moore Foundation, the Simons Foundation, and NOAA through the Cooperative Institute for the North Atlantic Region (CINAR) under Cooperative Agreement NA14OAR4320158; and grants to CSR from NASA (Ocean Biology and Biogeochemistry program).
    Keywords: Phytoplankton ; Community structure ; Ocean color ; Diatoms
    Repository Name: Woods Hole Open Access Server
    Type: Article
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 153
    Publication Date: 2022-05-25
    Description: © The Author(s), 2018. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Regional Studies in Marine Science 24 (2018): 336-342, doi:10.1016/j.rsma.2018.09.006.
    Description: The variations of sea level over the Red Sea may be divided into three broad categories: tidal, seasonal and weather-band. Our study employs a variety of in situ and satellite-derived data in the first comprehensive examination of the Red Sea water level variations in the weather-band (covering periods of 4–30 days). In the central Red Sea, the range of the weather-band sea level signal is of order 0.7 m, which exceeds the tidal and seasonal sea level ranges. From EOF and correlation analysis, we find that a large fraction of the weather-band sea level variation is due to a single mode of motion that extends over the entire Red Sea. In this mode, the water level rises and falls in unison with an amplitude that declines going southward over the southern Red Sea. The temporal signal of this mode is highly correlated with the along-axis surface wind stress over the southern Red Sea, and is closely reproduced by a simple one-dimensional barotropic model with forcing by the along-axis wind stress. Although this model does not account for the full suite of dynamics affecting weather-band sea level variations in the Red Sea, it may serve as a useful predictive tool. Sea level changes associated with the development and movement of sub-mesoscale features (e.g., eddies and boundary currents) are also shown to contribute to weather-band sea level motions in the Red Sea.
    Description: The pressure sensor and meteorological buoy data were acquired as part of a program supported by Award Nos. USA00001, USA00002 and KSA00011 made by KAUST to WHOI. The data analysis and modeling work of this study were supported General Commission for Survey (GCS), under a project number RGC/3/1612-01-01 made by Office of Sponsored research (ORS)/KAUST, Kingdom of Saudi Arabia.
    Keywords: Red Sea water levels ; Wind-driven sea level variations
    Repository Name: Woods Hole Open Access Server
    Type: Article
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 154
    Publication Date: 2022-05-25
    Description: This paper is not subject to U.S. copyright. The definitive version was published in Marine and Petroleum Geology 58A (2014): 99-116, doi:10.1016/j.marpetgeo.2014.04.009.
    Description: In addition to well established properties that control the presence or absence of the hydrate stability zone, such as pressure, temperature, and salinity, additional parameters appear to influence the concentration of gas hydrate in host sediments. The stratigraphic record at Site 17A in the Andaman Sea, eastern Indian Ocean, illustrates the need to better understand the role pore-scale phenomena play in the distribution and presence of marine gas hydrates in a variety of subsurface settings. In this paper we integrate field-generated datasets with newly acquired sedimentology, physical property, imaging and geochemical data with mineral saturation and ion activity products of key mineral phases such as amorphous silica and calcite, to document the presence and nature of secondary precipitates that contributed to anomalous porosity preservation at Site 17A in the Andaman Sea. This study demonstrates the importance of grain-scale subsurface heterogeneities in controlling the occurrence and distribution of concentrated gas hydrate accumulations in marine sediments, and document the importance that increased permeability and enhanced porosity play in supporting gas concentrations sufficient to support gas hydrate formation. The grain scale relationships between porosity, permeability, and gas hydrate saturation documented at Site 17A likely offer insights into what may control the occurrence and distribution of gas hydrate in other sedimentary settings.
    Description: The financial support for the NGHP01, from the Oil Industry Development Board, Oil and Natural Gas Corporation Ltd., GAIL (India) Ltd. and Oil India Ltd. is gratefully acknowledged. We also acknowledge the support extended by all the participating organizations of the NGHP: MoP&NG, DGH, ONGC, GAIL, OIL, NIO, NIOT, and RIL.
    Keywords: Porosity ; Permeability ; Grain size ; Indian Ocean ; Gas hydrate ; Saturation ; Volcanic ash ; Carbonate
    Repository Name: Woods Hole Open Access Server
    Type: Article
    Format: application/pdf
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 155
    Publication Date: 2022-05-25
    Description: © The Author(s), 2015. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Remote Sensing of Environment 160 (2015): 222-234, doi:10.1016/j.rse.2015.01.019.
    Description: Phytoplankton, at the base of the marine food web, represent a fundamental food source in coral reef ecosystems. The timing (phenology) and magnitude of the phytoplankton biomass are major determinants of trophic interactions. The Red Sea is one of the warmest and most saline basins in the world, characterized by an arid tropical climate regulated by the monsoon. These extreme conditions are particularly challenging for marine life. Phytoplankton phenological indices provide objective and quantitative metrics to characterize phytoplankton seasonality. The indices i.e. timings of initiation, peak, termination and duration are estimated here using 15 years (1997–2012) of remote sensing ocean-color data from the European Space Agency (ESA) Climate Change Initiative project (OC-CCI) in the entire Red Sea basin. The OC-CCI product, comprising merged and bias-corrected observations from three independent ocean-color sensors (SeaWiFS, MODIS and MERIS), and processed using the POLYMER algorithm (MERIS period), shows a significant increase in chlorophyll data coverage, especially in the southern Red Sea during the months of summer NW monsoon. In open and reef-bound coastal waters, the performance of OC-CCI chlorophyll data is shown to be comparable with the performance of other standard chlorophyll products for the global oceans. These features have permitted us to investigate phytoplankton phenology in the entire Red Sea basin, and during both winter SE monsoon and summer NW monsoon periods. The phenological indices are estimated in the four open water provinces of the basin, and further examined at six coral reef complexes of particular socio-economic importance in the Red Sea, including Siyal Islands, Sharm El Sheikh, Al Wajh bank, Thuwal reefs, Al Lith reefs and Farasan Islands. Most of the open and deeper waters of the basin show an apparent higher chlorophyll concentration and longer duration of phytoplankton growth during the winter period (relative to the summer phytoplankton growth period). In contrast, most of the reef-bound coastal waters display equal or higher peak chlorophyll concentrations and equal or longer duration of phytoplankton growth during the summer period (relative to the winter phytoplankton growth period). The ecological and biological significance of the phytoplankton seasonal characteristics are discussed in context of ecosystem state assessment, and particularly to support further understanding of the structure and functioning of coral reef ecosystems in the Red Sea.
    Keywords: Phytoplankton phenology ; Ocean-color remote sensing ; ESA OC-CCI ; Coral reef ecosystems ; Monsoon ; Ecological indicators ; Red Sea
    Repository Name: Woods Hole Open Access Server
    Type: Article
    Format: application/pdf
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 156
    Publication Date: 2022-05-25
    Description: © The Author(s), 2014. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Cold Regions Science and Technology 109 (2015): 9-17, doi:10.1016/j.coldregions.2014.08.004.
    Description: Traditional measures for detecting oil spills in the open-ocean are both difficult to apply and less effective in ice-covered seas. In view of the increasing levels of commercial activity in the Arctic, there is a growing gap between the potential need to respond to an oil spill in Arctic ice-covered waters and the capability to do so. In particular, there is no robust operational capability to remotely locate oil spilt under or encapsulated within sea ice. To date, most research approaches the problem from on or above the sea ice, and thus they suffer from the need to ‘see’ through the ice and overlying snow. Here we present results from a large-scale tank experiment which demonstrate the detection of oil beneath sea ice, and the quantification of the oil layer thickness is achievable through the combined use of an upward-looking camera and sonar deployed in the water column below a covering of sea ice. This approach using acoustic and visible measurements from below is simple and effective, and potentially transformative with respect to the operational response to oil spills in the Arctic marine environment. These results open up a new direction of research into oil detection in ice-covered seas, as well as describing a new and important role for underwater vehicles as platforms for oil-detecting sensors under Arctic sea ice.
    Description: This work was funded through a competitive grant for the detection of oil under ice obtained from Prince William Sound Oil Spill Recovery Institute (OSRI) (11-10-09). Additional funding/resources was obtained through the EU FP7 funded ACCESS programme (Grant Agreement n°. 265863).
    Keywords: Arctic ; Oil spill ; Sea ice ; Oil detection ; Sonar ; Camera
    Repository Name: Woods Hole Open Access Server
    Type: Article
    Format: application/pdf
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 157
    Publication Date: 2022-05-25
    Description: This paper is not subject to U.S. copyright. The definitive version was published in Continental Shelf Research 102 (2015): 47-61, doi:10.1016/j.csr.2015.04.005.
    Description: The spring phytoplankton bloom on the US Northeast Continental Shelf is a feature of the ecosystem production cycle that varies annually in timing, spatial extent, and magnitude. To quantify this variability, we analyzed remotely-sensed ocean color data at two spatial scales, one based on ecologically defined sub-units of the ecosystem (production units) and the other on a regular grid (0.5°). Five units were defined: Gulf of Maine East and West, Georges Bank, and Middle Atlantic Bight North and South. The units averaged 47×103 km2 in size. The initiation and termination of the spring bloom were determined using change-point analysis with constraints on what was identified as a bloom based on climatological bloom patterns. A discrete spring bloom was detected in most years over much of the western Gulf of Maine production unit. However, bloom frequency declined in the eastern Gulf of Maine and transitioned to frequencies as low as 50% along the southern flank of the Georges Bank production unit. Detectable spring blooms were episodic in the Middle Atlantic Bight production units. In the western Gulf of Maine, bloom duration was inversely related to bloom start day; thus, early blooms tended to be longer lasting and larger magnitude blooms. We view this as a phenological mismatch between bloom timing and the “top-down” grazing pressure that terminates a bloom. Estimates of secondary production were available from plankton surveys that provided spring indices of zooplankton biovolume. Winter chlorophyll biomass had little effect on spring zooplankton biovolume, whereas spring chlorophyll biomass had mixed effects on biovolume. There was evidence of a “bottom up” response seen on Georges Bank where spring zooplankton biovolume was positively correlated with the concentration of chlorophyll. However, in the western Gulf of Maine, biovolume was uncorrelated with chlorophyll concentration, but was positively correlated with bloom start and negatively correlated with magnitude. This observation is consistent with both a “top-down” mechanism of control of the bloom and a “bottom-up” effect of bloom timing on zooplankton grazing. Our inability to form a consistent model of these relationships across adjacent systems underscores the need for further research.
    Keywords: Spring bloom ; US Northeast Shelf ; Zooplankton biomass ; Bloom timing ; Climate
    Repository Name: Woods Hole Open Access Server
    Type: Article
    Format: application/pdf
    Format: application/msword
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 158
    Publication Date: 2022-05-25
    Description: © The Author(s), 2015. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Journal of Hydrology: Regional Studies 4B (2015): 108-122, doi:10.1016/j.ejrh.2015.05.010.
    Description: This study assessed the influence of land cover changes on evapotranspiration and streamflow in small catchments in the Upper Xingu River Basin (Mato Grosso state, Brazil). Streamflow was measured in catchments with uniform land use for September 1, 2008 to August 31, 2010. We used models to simulate evapotranspiration and streamflow for the four most common land cover types found in the Upper Xingu: tropical forest, cerrado (savanna), pasture, and soybean croplands. We used INLAND to perform single point simulations considering tropical rainforest, cerrado and pasturelands, and AgroIBIS for croplands. Converting natural vegetation to agriculture substantially modifies evapotranspiration and streamflow in small catchments. Measured mean streamflow in soy catchments was about three times greater than that of forest catchments, while the mean annual amplitude of flow in soy catchments was more than twice that of forest catchments. Simulated mean annual evapotranspiration was 39% lower in agricultural ecosystems (pasture and soybean cropland) than in natural ecosystems (tropical rainforest and cerrado). Observed and simulated mean annual streamflows in agricultural ecosystems were more than 100% higher than in natural ecosystems. The accuracy of the simulations was improved by using field-measured soil hydraulic properties. The inclusion of local measurements of key soil parameters is likely to improve hydrological simulations in other tropical regions.
    Description: This study was supported by the US National Science Foundation (DEB-0949996, DEB-0743703), the Gordon and Betty Moore Foundation, and the Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq, process 135648/2011-4).
    Keywords: Evapotranspiration ; Streamflow ; Modeling ; Xingu Basin ; Amazon ; Cerrado
    Repository Name: Woods Hole Open Access Server
    Type: Article
    Format: application/pdf
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 159
    Publication Date: 2022-05-25
    Description: © The Author(s), 2015. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Deep Sea Research Part II: Topical Studies in Oceanography 116 (2015): 303-320, doi:10.1016/j.dsr2.2014.11.020.
    Description: The concentration and the major phase composition (particulate organic matter, CaCO3, opal, lithogenic matter, and iron and manganese oxyhydroxides) of marine particles is thought to determine the scavenging removal of particle-reactive TEIs. Particles are also the vector for transferring carbon from the atmosphere to the deep ocean via the biological carbon pump, and their composition may determine the efficiency and strength of this transfer. Here, we present the first full ocean depth section of size-fractionated (1–51 µm, 〉51 µm) suspended particulate matter (SPM) concentration and major phase composition from the US GEOTRACES North Atlantic Zonal Transect between Woods Hole, MA and Lisbon, Portugal conducted in 2010 and 2011. Several major particle features are notable in the section: intense benthic nepheloid layers were observed in the western North American margin with concentrations of SPM of up to 1648 µg/L, two to three orders of magnitude higher than surrounding waters, that were dominated by lithogenic material. A more moderate benthic nepheloid layer was also observed in the eastern Mauritanian margin (44 µg/L) that had a lower lithogenic content and, notably, significant concentrations of iron and manganese oxyhydroxides (2.5% each). An intermediate nepheloid layer reaching 102 µg/L, an order of magnitude above surrounding waters, was observed associated with the Mediterranean Outflow. Finally, there was a factor of two enhancement in SPM at the TAG hydrothermal plume due almost entirely to the addition of iron oxyhydroxides from the hydrothermal vent. We observe correlations between POC and CaCO3 in large (〉51 µm) particles in the upper 2000 m, but not deeper than 2000 m, and no correlations between POC and CaCO3 at any depth in small (〈51 µm) particles. There were also no correlations between POC and lithogenic material in large particles. Overall, there were very large uncertainties associated with all regression coefficients for mineral ballast (“carrying coefficients”), suggesting that mineral ballast was not a strong predictor for POC in this section.
    Description: US and International GEOTRACES Offices (NSF OCE-0850963 and OCE-1129603)
    Keywords: Particles ; SPM ; CaCO3 ; Opal ; Biogenic silica ; POC ; Ballast ; Dust ; Lithogenic material
    Repository Name: Woods Hole Open Access Server
    Type: Article
    Format: application/pdf
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 160
    Publication Date: 2022-05-25
    Description: © The Author(s), 2014]. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Progress in Oceanography 136 (2015): 201-222, doi:10.1016/j.pocean.2014.08.012.
    Description: The Bering–Chukchi–Beaufort (BCB) population of bowhead whales (Balaena mysticetus) ranges across the seasonally ice-covered waters of the Bering, Chukchi, and Beaufort seas. We used locations from 54 bowhead whales, obtained by satellite telemetry between 2006 and 2012, to define areas of concentrated use, termed “core-use areas”. We identified six primary core-use areas and describe the timing of use and physical characteristics (oceanography, sea ice, and winds) associated with these areas. In spring, most whales migrated from wintering grounds in the Bering Sea to the Cape Bathurst polynya, Canada (Area 1), and spent the most time in the vicinity of the halocline at depths 〈75 m, which are within the euphotic zone, where calanoid copepods ascend following winter diapause. Peak use of the polynya occurred between 7 May and 5 July; whales generally left in July, when copepods are expected to descend to deeper depths. Between 12 July and 25 September, most tagged whales were located in shallow shelf waters adjacent to the Tuktoyaktuk Peninsula, Canada (Area 2), where wind-driven upwelling promotes the concentration of calanoid copepods. Between 22 August and 2 November, whales also congregated near Point Barrow, Alaska (Area 3), where east winds promote upwelling that moves zooplankton onto the Beaufort shelf, and subsequent relaxation of these winds promoted zooplankton aggregations. Between 27 October and 8 January, whales congregated along the northern shore of Chukotka, Russia (Area 4), where zooplankton likely concentrated along a coastal front between the southeastward-flowing Siberian Coastal Current and northward-flowing Bering Sea waters. The two remaining core-use areas occurred in the Bering Sea: Anadyr Strait (Area 5), where peak use occurred between 29 November and 20 April, and the Gulf of Anadyr (Area 6), where peak use occurred between 4 December and 1 April; both areas exhibited highly fractured sea ice. Whales near the Gulf of Anadyr spent almost half of their time at depths between 75 and 100 m, usually near the seafloor, where a subsurface front between cold Anadyr Water and warmer Bering Shelf Water presumably aggregates zooplankton. The amount of time whales spent near the seafloor in the Gulf of Anadyr, where copepods (in diapause) and, possibly, euphausiids are expected to aggregate provides strong evidence that bowhead whales are feeding in winter. The timing of bowhead spring migration corresponds with when zooplankton are expected to begin their spring ascent in April. The core-use areas we identified are also generally known from other studies to have high densities of whales and we are confident these areas represent the majority of important feeding areas during the study (2006–2012). Other feeding areas, that we did not detect, likely existed during the study and we expect core-use area boundaries to shift in response to changing hydrographic conditions.
    Description: This study is part of the Synthesis of Arctic Research (SOAR) and was funded in part by the U.S. Department of the Interior, Bureau of Ocean Energy Management, Environmental Studies Program through Interagency Agreement No. M11PG00034 with the U.S. Department of Commerce, National Oceanic and Atmospheric Administration (NOAA), Office of Oceanic and Atmospheric Research (OAR), Pacific Marine Environmental Laboratory (PMEL). Funding for this research was mainly provided by U.S. Minerals Management Service (now Bureau of Ocean Energy Management) under contracts M12PC00005, M10PS00192, and 01-05-CT39268, with the support and assistance from Charles Monnett and Jeffery Denton, and under Interagency Agreement No. M08PG20021 with NOAA-NMFS and Contract No. M10PC00085 with ADF&G. Work in Canada was also funded by the Fisheries Joint Management Committee, Ecosystem Research Initiative (DFO), and Panel for Energy Research and Development.
    Repository Name: Woods Hole Open Access Server
    Type: Article
    Format: application/pdf
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 161
    Publication Date: 2022-05-25
    Description: © The Author(s), 2015. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Marine Chemistry 175 (2015): 72-81, doi:10.1016/j.marchem.2015.02.011.
    Description: Carbon and nutrients are transported out of the surface ocean and sequestered at depth by sinking particles. Sinking particle sizes span many orders of magnitude and the relative influence of small particles on carbon export compared to large particles has not been resolved. To determine the influence of particle size on carbon export, the flux of both small (11–64 μm) and large (〉 64 μm) particles in the upper mesopelagic was examined during 5 cruises of the Bermuda Atlantic Time Series (BATS) in the Sargasso Sea using neutrally buoyant sediment traps mounted with tubes containing polyacrylamide gel layers and tubes containing a poisoned brine layer. Particles were also collected in surface-tethered, free-floating traps at higher carbon flux locations in the tropical and subtropical South Atlantic Ocean. Particle sizes spanning three orders of magnitude were resolved in gel samples, included sinking particles as small as 11 μm. At BATS, the number flux of small particles tended to increase with depth, whereas the number flux of large particles tended to decrease with depth. The carbon content of different sized particles could not be modeled by a single set of parameters because the particle composition varied across locations and over time. The modeled carbon flux by small particles at BATS, including all samples and depths, was 39 ± 20% of the modeled total carbon flux, and the percentage increased with depth in 4 out of the 5 months sampled. These results indicate that small particles (〈 64 μm) are actively settling in the water column and are an important contributor to carbon flux throughout the mesopelagic. Observations and models that overlook these particles will underestimate the vertical flux of organic matter in the ocean.
    Description: Funding for this study was provided by the National Science Foundation Chemical Oceanography Program (OCE-1260001 and 1406552 to M. L. Estapa) and the Woods Hole Oceanographic Institution Devonshire Postdoctoral Scholarship awarded to C. A. Durkin. Funding for the DeepDOM cruise was provided by the National Science Foundation Chemical Oceanography Program (OCE-1154320 to E. B. Kujawinski and K. Longnecker, WHOI).
    Keywords: Particle size ; Particle settling ; Carbon cycle ; Sediment traps ; Mesopelagic zone
    Repository Name: Woods Hole Open Access Server
    Type: Article
    Format: application/pdf
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 162
    Publication Date: 2022-05-25
    Description: © The Author(s), 2015. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Continental Shelf Research 108 (2015): 55-64, doi:10.1016/j.csr.2015.08.005.
    Description: Fronts influence the structure and function of coastal marine ecosystems. Due to the complexity and dynamic nature of coastal environments and the small scales of frontal gradient zones, frontal research is difficult. To advance this challenging research we developed a method enabling an autonomous underwater vehicle (AUV) to detect and track fronts, thereby providing high-resolution observations in the moving reference frame of the front itself. This novel method was applied to studying the evolution of a frontal zone in the coastal upwelling environment of Monterey Bay, California, through a period of variability in upwelling intensity. Through 23 frontal crossings in four days, the AUV detected the front using real-time analysis of vertical thermal stratification to identify water types and the front between them, and the vehicle tracked the front as it moved more than 10 km offshore. The physical front coincided with a biological front between strongly stratified phytoplankton-enriched water inshore of the front, and weakly stratified phytoplankton-poor water offshore of the front. While stratification remained a consistent identifier, conditions on both sides of the front changed rapidly as regional circulation responded to relaxation of upwelling winds. The offshore water type transitioned from relatively cold and saline upwelled water to relatively warm and fresh coastal transition zone water. The inshore water type exhibited an order of magnitude increase in chlorophyll concentrations and an associated increase in oxygen and decrease in nitrate. It also warmed and freshened near the front, consistent with the cross-frontal exchange that was detected in the high-resolution AUV data. AUV-observed cross-frontal exchanges beneath the surface manifestation of the front emphasize the importance of AUV synoptic water column surveys in the frontal zone.
    Description: This work was supported by the David and Lucile Packard Foundation.
    Keywords: Fronts ; Upwelling ; Relaxation ; Autonomous underwater vehicle
    Repository Name: Woods Hole Open Access Server
    Type: Article
    Format: application/pdf
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 163
    Publication Date: 2022-05-25
    Description: © The Author(s), 2015. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Quaternary Geochronology 30 (2015): 114–131, doi:10.1016/j.quageo.2015.09.001.
    Description: The ages of recent effusive eruptions on Erebus volcano, Antarctica are poorly known. Published 40Ar/39Ar ages of the 10 youngest “post-caldera” lava flows are unreliable because of the young ages of the flows (〈10 ka) and the presence of excess 40Ar. Here we use cosmogenic 3He and 36Cl to provide new ages for the 10 youngest flows and 3 older summit flows, including a newly recognized flow distinguished by its exposure age. Estimated eruption ages of the post-caldera flows, assuming no erosion or prior snow cover, range from 4.52 ± 0.08 ka to 8.50 ± 0.19 ka, using Lifton et al. (2014) to scale cosmogenic production rates. If the older Lal (1991)/Stone (2000) model is used to scale production rates, calculated ages are older by 16–25%. Helium-3 and chlorine-36 exposure ages measured on the same samples show excellent agreement. Helium-3 ages measured on clinopyroxene and olivine from the same samples are discordant, probably due in part to lower-than-expected 3He production rates in the Fe-rich olivine. Close agreement of multiple clinopyroxene 3He ages from each flow indicates that the effects of past snow coverage on the exposure ages have been minimal. The new cosmogenic ages differ considerably from published 40Ar/39Ar and 36Cl ages and reveal that the post-caldera flows were erupted during relatively brief periods of effusive activity spread over an interval of ∼4 ka. The average eruption rate over this interval is estimated to be 0.01 km3/ka. Because the last eruption was at least 4 ka ago, and the longest repose interval between the 10 youngest eruptions is ∼1 ka, we consider the most recent period of effusive activity to have ended.
    Description: This research was supported by grant ANT-1142083 from the National Science Foundation, Division of Polar Programs.
    Keywords: Erebus volcano ; Cosmogenic nuclides ; Exposure age ; Helium-3 ; Chlorine-36
    Repository Name: Woods Hole Open Access Server
    Type: Article
    Format: application/pdf
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 164
    Publication Date: 2022-05-25
    Description: This paper is not subject to U.S. copyright. The definitive version was published in Deep Sea Research Part II: Topical Studies in Oceanography 132 (2016): 263–264, doi:10.1016/j.dsr2.2016.08.001.
    Repository Name: Woods Hole Open Access Server
    Type: Article
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 165
    Publication Date: 2022-05-25
    Description: © The Author(s), 2016. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Methods in Oceanography 17 (2016): 264-281, doi:10.1016/j.mio.2016.09.004.
    Description: Understanding intrusive exchange at oceanic water mass fronts may depend on building data-constrained models of the processes, but obtaining the needed representative and comprehensive data is challenging. Acoustic imaging (remote sensing) is an attractive method for mapping the three-dimensional intrusion geometry to enable the required focused in situ sampling of the mixing processes in intrusions. The method depends on backscatter of sound from sharp interfaces and from microstructure resulting from double-diffusive instability (DDI), a probable occurrence at intrusions. The potential of the method is evaluated using data collected using established methods in a field of intrusions south of New England. Above and beneath warm and salty intrusions may lie diffusive–convective DDI microstructure and salt-fingering microstructure, respectively, marking the intrusion boundaries, providing the backscattering features. The data show that both types of microstructure can occur in close proximity within intrusions, but the question of whether this is common or not is unanswered by the modest amount of data, as are questions about continuity of DDI-microstructure in intrusions (to facilitate intrusion acoustic imaging) and variability of DDI-driven heat, salt and buoyancy fluxes. Analysis here shows that detectable backscatter from DDI-microstructure will occur, and can be easily measured when plankton scattering is low enough. Interface scattering is also likely to be detectable. The DDI-linked microstructure data used here are inherently interesting in their own right and are presented in some detail.
    Description: The data were collected under Office of Naval Research grant N00014-03-1-0335. Acoustic analysis was done under grant N00014-14-1-0223/N00014-16-1-2372.
    Keywords: Intrusions ; Double-diffusive microstructure ; Ocean mixing ; Acoustic backscatter ; Echosounder ; South New England shelf
    Repository Name: Woods Hole Open Access Server
    Type: Article
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 166
    Publication Date: 2022-05-25
    Description: © The Author(s), 2016. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Developmental Biology 426 (2017): 188–193, doi:10.1016/j.ydbio.2016.03.006.
    Description: Completion of the Xenopus laevis genome sequence from inbred J strain animals has facilitated the generation of germline mutant X. laevis using targeted genome editing. In the last few years, numerous reports have demonstrated that TALENs are able to induce mutations in F0 Xenopus embryos, but none has demonstrated germline transmission of such mutations in X. laevis. In this report we used the oocyte host-transfer method to generate mutations in both tyrosinase homeologs and found highly-penetrant germline mutations; in contrast, embryonic injections yielded few germline mutations. We also compared the distribution of mutations in several F0 somatic tissues and germ cells and found that the majority of mutations in each tissue were different. These results establish that X. laevis J strain animals are very useful for generating germline mutations and that the oocyte host-transfer method is an efficient technique for generating mutations in both homeologs.
    Description: This work was supported by grants from the NIH (OD010997 and HD084409).
    Keywords: Xenopus laevis ; TALENs ; J strain ; Tyrosinase ; Oocyte host-transfer ; Genome editing
    Repository Name: Woods Hole Open Access Server
    Type: Article
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 167
    Publication Date: 2022-05-25
    Description: This paper is not subject to U.S. copyright. The definitive version was published in Global and Planetary Change 167 (2018): 1-23, doi:10.1016/j.gloplacha.2018.04.004.
    Description: A compilation of foraminiferal stable isotope measurements from southern high latitude (SHL) deep-sea sites provides a novel perspective important for understanding Earth's paleotemperature and paleoceanographic changes across the rise and fall of the Cretaceous Hot Greenhouse climate and the subsequent Paleogene climatic optimum. Both new and previously published results are placed within an improved chronostratigraphic framework for southern South Atlantic and southern Indian Ocean sites. Sites studied were located between 58° and 65°S paleolatitude and were deposited at middle to upper bathyal paleodepths. Oxygen isotope records suggest similar trends in both bottom and surface water temperatures in the southern sectors of the South Atlantic and in the Indian Ocean basins. Warm conditions were present throughout the Albian, extreme warmth existed during the Cretaceous Thermal Maximum (early-mid-Turonian) through late Santonian, and long-term cooling began in the Campanian and culminated in Cretaceous temperature minima during the Maastrichtian. Gradients between surface and seafloor δ18O and δ13C values were unusually high throughout the 11.5 m.y. of extreme warmth during the Turonian-early Campanian, but these vertical gradients nearly disappeared by the early Maastrichtian. In absolute terms, paleotemperature estimates that use standard assumptions for pre-glacial seawater suggest sub-Antarctic bottom waters were ≥21 °C and sub-Antarctic surface waters were ≥27 °C during the Turonian, values warmer than published climate models support. Alternatively, estimated temperatures can be reduced to the upper limits of model results through freshening of high latitude waters but only if there were enhanced precipitation of water with quite low δ18O values. Regardless, Turonian planktonic δ18O values are ~1.5‰ lower than minimum values reported for the Paleocene-Eocene Thermal Maximum (PETM) from the same region, a difference which corresponds to Turonian surface temperatures ~6 °C warmer than peak PETM temperatures if Turonian and Paleocene temperatures are estimated using the same assumptions. It is likely that warm oceans surrounding and penetrating interior Antarctica (given higher relative sea level) prevented growth of Antarctic ice sheets at all but the highest elevations from the late Aptian through late Campanian; however, Maastrichtian temperatures may have been cool enough to allow growth of small, ephemeral ice sheets. The standard explanation for the sustained warmth during Cretaceous Hot Greenhouse climate invokes higher atmospheric CO2 levels from volcanic outgassing, but correlation among temperature estimates, proxy estimates of pCO2, and intervals of high fluxes of both mafic and silicic volcanism are mostly poor. This comparison demonstrates that the relative timing between events and their putative consequences need to be better constrained to test and more fully understand relationships among volcanism, pCO2, temperature ocean circulation, Earth's biota and the carbon cycle.
    Description: Funding from the Smithsonian National Museum of Natural History and the National Science Foundation (NSF-OCE 1261586) helped support this research.
    Keywords: Cretaceous Hot Greenhouse ; Foraminiferal stable isotopes ; Volcanic outgassing ; pCO2 proxies ; Greenhouse glacier hypothesis ; Southern high latitudes
    Repository Name: Woods Hole Open Access Server
    Type: Article
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 168
    Publication Date: 2022-05-25
    Description: © The Author(s), 2018. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Chemical Geology 493 (2018): 210-223, doi:10.1016/j.chemgeo.2018.05.040.
    Description: The GEOTRACES Intermediate Data Product 2017 (IDP2017) is the second publicly available data product of the international GEOTRACES programme, and contains data measured and quality controlled before the end of 2016. The IDP2017 includes data from the Atlantic, Pacific, Arctic, Southern and Indian oceans, with about twice the data volume of the previous IDP2014. For the first time, the IDP2017 contains data for a large suite of biogeochemical parameters as well as aerosol and rain data characterising atmospheric trace element and isotope (TEI) sources. The TEI data in the IDP2017 are quality controlled by careful assessment of intercalibration results and multi-laboratory data comparisons at crossover stations. The IDP2017 consists of two parts: (1) a compilation of digital data for more than 450 TEIs as well as standard hydrographic parameters, and (2) the eGEOTRACES Electronic Atlas providing an on-line atlas that includes more than 590 section plots and 130 animated 3D scenes. The digital data are provided in several formats, including ASCII, Excel spreadsheet, netCDF, and Ocean Data View collection. Users can download the full data packages or make their own custom selections with a new on-line data extraction service. In addition to the actual data values, the IDP2017 also contains data quality flags and 1-σ data error values where available. Quality flags and error values are useful for data filtering and for statistical analysis. Metadata about data originators, analytical methods and original publications related to the data are linked in an easily accessible way. The eGEOTRACES Electronic Atlas is the visual representation of the IDP2017 as section plots and rotating 3D scenes. The basin-wide 3D scenes combine data from many cruises and provide quick overviews of large-scale tracer distributions. These 3D scenes provide geographical and bathymetric context that is crucial for the interpretation and assessment of tracer plumes near ocean margins or along ridges. The IDP2017 is the result of a truly international effort involving 326 researchers from 25 countries. This publication provides the critical reference for unpublished data, as well as for studies that make use of a large cross-section of data from the IDP2017. This article is part of a special issue entitled: Conway GEOTRACES - edited by Tim M. Conway, Tristan Horner, Yves Plancherel, and Aridane G. González.
    Description: We gratefully acknowledge financial support by the Scientific Committee on Oceanic Research (SCOR) through grants from the U.S. National Science Foundation, including grants OCE-0608600, OCE-0938349, OCE-1243377, and OCE-1546580. Financial support was also provided by the UK Natural Environment Research Council (NERC), the Ministry of Earth Science of India, the Centre National de Recherche Scientifique, l'Université Paul Sabatier de Toulouse, the Observatoire Midi-Pyrénées Toulouse, the Universitat Autònoma de Barcelona, the Kiel Excellence Cluster The Future Ocean, the Swedish Museum of Natural History, The University of Tokyo, The University of British Columbia, The Royal Netherlands Institute for Sea Research, the GEOMAR-Helmholtz Centre for Ocean Research Kiel, and the Alfred Wegener Institute.
    Keywords: GEOTRACES ; Trace elements ; Isotopes ; Electronic atlas ; IDP2017
    Repository Name: Woods Hole Open Access Server
    Type: Article
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 169
    Publication Date: 2022-05-25
    Description: This paper is not subject to U.S. copyright. The definitive version was published in Estuarine, Coastal and Shelf Science 150, Pt.B (2014): 325-331, doi:10.1016/j.ecss.2014.03.025.
    Description: Amplitudes of semi-diurnal tidal fluctuations measured at an ocean inlet system decay nearly linearly by 87% between the ocean edge of the offshore ebb-tidal delta and the backbay. A monochromatic, dynamical model for a tidally choked inlet separately reproduces the evolution of the amplitudes and phases of the semi-diurnal and diurnal tidal constituents observed between the ocean and inland locations. However, the monochromatic model over-predicts the amplitude and under-predicts the lag of the lower-frequency subtidal and fortnightly motions observed in the backbay. A dimensional model that considers all tidal constituents simultaneously, balances the along-channel pressure gradient with quadratic bottom friction, and that includes a time-varying channel water depth, is used to show that that these model-data differences are associated with nonlinear interactions between the tidal constituents that are not included in non-dimensional, monochromatic models. In particular, numerical simulations suggest that the nonlinear interactions induced by quadratic bottom friction modify the amplitude and phase of the subtidal and fortnightly backbay response. This nonlinear effect on the low-frequency (subtidal and fortnightly) motions increases with increasing high-frequency (semi-diurnal) amplitude. The subtidal and fortnightly motions influence water exchange processes, and thus backbay temperature and salinity.
    Description: We thank the Office of Naval Research (N0001411WX20962; N0001412WX20498) for funding.
    Keywords: Tidal choking ; Tide ; Nonlinear response ; Fortnightly response ; Subtidal signal ; Tidal wave propagation ; Inlet
    Repository Name: Woods Hole Open Access Server
    Type: Article
    Format: application/pdf
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 170
    Publication Date: 2022-05-25
    Description: © The Author(s), 2015. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Deep Sea Research Part I: Oceanographic Research Papers 102 (2015): 43-54, doi:10.1016/j.dsr.2015.04.004.
    Description: Over the past few decades, sea ice retreat during summer has been enhanced in the Pacific sector of the Arctic basin, likely due in part to increasing summertime heat flux of Pacific-origin water from the Bering Strait. Barrow Canyon, in the northeast Chukchi Sea, is a major conduit through which the Pacific-origin water enters the Arctic basin. This paper presents results from 6 repeat high-resolution shipboard hydrographic/velocity sections occupied across Barrow Canyon in summer 2010. The different Pacific water masses feeding the canyon – Alaskan coastal water (ACW), summer Bering Sea water (BSW), and Pacific winter water (PWW) – all displayed significant intra-seasonal variability. Net volume transports through the canyon were between 0.96 and 1.70 Sv poleward, consisting of 0.41–0.98 Sv of warm Pacific water (ACW and BSW) and 0.28–0.65 Sv of PWW. The poleward heat flux also varied strongly, ranging from 8.56 TW to 24.56 TW, mainly due to the change in temperature of the warm Pacific water. Using supplemental mooring data from the core of the warm water, along with wind data from the Pt. Barrow weather station, we derive and assess a proxy for estimating heat flux in the canyon for the summer time period, which is when most of the heat passes northward towards the basin. The average heat flux for 2010 was estimated to be 3.34 TW, which is as large as the previous record maximum in 2007. This amount of heat could melt 315,000 km2 of 1-meter thick ice, which likely contributed to significant summer sea ice retreat in the Pacific sector of the Arctic Ocean.
    Description: MI, TK, YF, KO and DS were supported by Green Network of Excellence Program (GRENE Program), Arctic Climate Change Research Project ‘Rapid Change of the Arctic Climate System and its Global Influences’ by Ministry of Education, Culture, Sports, Science and Technology Japan. RP was supported by grant ARC-1203906 from the US National Science Foundation. CA was supported by grant ARC-1023331 from the US National Science Foundation and by the Cooperative Institute for the North Atlantic Region (NOAA Cooperative AgreementNA09OAR4320129) with funds provided by the US National Oceanographic and Atmospheric Administration through an Interagency Agreement between the US Bureau of Ocean and Energy Management and the National Marine Mammal Laboratory. SV was supported by the Department of Fisheries and Oceans Canada. MI and TK were supported by the Japan Agency for Marine-Earth Science and Technology. MI, TK, YF and KO were supported by Grant no. 2014-23 from Joint Research Program of the Institute of Low Temperature Science, Hokkaido University. YF and KO were supported by grants-in-aid 20221001 for scientific research from the Ministry of Education, Culture, Sports, Science and Technology of Japan. JTM was supported by grant PLR-1041102 from the US National Science Foundation.
    Keywords: Polar oceanography ; Arctic Ocean ; Chukchi Sea ; Heat fluxes ; Volume transports ; Water properties
    Repository Name: Woods Hole Open Access Server
    Type: Article
    Format: application/pdf
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 171
    Publication Date: 2022-05-25
    Description: © The Author(s), 2015. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in GeoResJ 6 (2015): 195-201, doi:10.1016/j.grj.2015.03.001.
    Description: Data generated as a result of publicly funded research in the USA and other countries are now required to be available in public data repositories. However, many scientific data over the past 50+ years were collected at a time when the technology for curation, storage, and dissemination were primitive or non-existent and consequently many of these datasets are not available publicly. These so-called “dark data” sets are essential to the understanding of how the ocean has changed chemically and biologically in response to the documented shifts in temperature and salinity (aka climate change). An effort is underway to bring into the light, dark data about zooplankton collected in the 1970s and 1980s as part of the cold-core and warm-core rings multidisciplinary programs and other related projects. Zooplankton biomass and euphausiid species abundance from 306 tows and related environmental data including many depth specific tows taken on 34 research cruises in the Northwest Atlantic are online and accessible from the Biological and Chemical Oceanography Data Management Office (BCO-DMO).
    Description: This is a contribution from the Biological and Chemical Oceanography Data Management office (BCO-DMO) that is funded by the United States National Science Foundation Grants OCE-1031253 and OCE-1435578.
    Keywords: Data rescue ; Zooplankton biomass ; Zooplankton species abundance ; Dark data ; North Atlantic Gulf Stream Rings
    Repository Name: Woods Hole Open Access Server
    Type: Article
    Format: application/pdf
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 172
    Publication Date: 2022-05-25
    Description: © The Author(s), 2014. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Journal of Marine Systems 147 (2015): 29-44, doi:10.1016/j.jmarsys.2014.04.006.
    Description: The Arctic Ocean is changing rapidly as the global climate warms but it is not well known how these changes are affecting biological productivity and the carbon cycle. Here we study the Beaufort Gyre region of the Canada Basin in August and use the large reduction in summertime sea ice extent from 2011 to 2012 to investigate potential impacts of climate warming on biological productivity. We use the gas tracers O2/Ar and triple oxygen isotopes to quantify rates of net community production (NCP) and gross oxygen production (GOP) in the gyre. Comparison of the summer of 2011 with the summer of 2012, the latter of which had record low sea ice coverage, is relevant to how biological productivity might change in a seasonally ice-free Arctic Ocean. We find that, in the surface waters measured here, GOP in 2012 is significantly greater than in 2011, with the mean basin-wide 2012 GOP = 38 ± 3 mmol O2 m− 2 d− 1 whereas in 2011, mean basin GOP = 16 ± 5 mmol O2 m− 2 d− 1. We hypothesize that this is because the lack of sea ice and consequent increase in light penetration allows photosynthesis to increase in 2012. However, despite the increase in GOP, NCP is the same in the two years; mean NCP in 2012 is 3.0 ± 0.2 mmol O2 m− 2 y− 1 and in 2011 is 3.1 ± 0.2 mmol O2 m− 2 y− 1. This suggests that the heterotrophic community (zooplankton and/or bacteria) increased its activity as well and thus respired the additional carbon produced by the increased photosynthetic production. In both years, stations on the shelf had GOP 3 to 5 times and NCP 2 to 10 times larger than the basin stations. Additionally, we show that in 2011, the NCP/GOP ratio is smallest in regions with highest ice cover, suggesting that the microbial loop was more efficient at recycling carbon in regions where the ice was just starting to melt. These results highlight that although satellite chlorophyll records show, and many models predict, an increase in summertime primary production in the Arctic Basin as it warms, the net amount of carbon processed by the biological pump during summer may not change as a function of ice cover. Thus, a rapid reduction in summertime ice extent may not change the net community productivity or carbon balance in the Beaufort Gyre.
    Description: We thank our funding sources: the National Science Foundation (PLR 1304406, PLR-0856531) and the support of Fisheries and Oceans Canada.
    Keywords: Arctic Ocean ; Canada Basin ; Beaufort Gyre ; Gross production ; Net community production
    Repository Name: Woods Hole Open Access Server
    Type: Article
    Format: application/pdf
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 173
    Publication Date: 2022-05-25
    Description: © The Author(s), 2015. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in International Journal for Parasitology: Parasites and Wildlife 4 (2015): 414–420, doi:10.1016/j.ijppaw.2015.11.002.
    Description: Baleen and sperm whales, belonging to the Order Cetartiodactyla, are the largest and heaviest existent mammals in the world, collectively known as large whales. Large whales have been subjected to a variety of conservation means, which could be better monitored and managed if physiological and pathophysiological information, such as pathogen infections, could already be gathered from free-swimming animals instead of carcasses. Parasitic diseases are increasingly recognized for their profound influences on individual, population, and even ecosystem health. Furthermore, a number of parasite species have gained importance as opportunistic neozoan infections in the marine environment. Nonetheless, traditional approaches to study parasitic diseases have been impractical for large whales, since there is no current routine method for the capture and handling of these large animals and there is presently no practical method to obtain blood samples remotely from free-ranging whales. Therefore, we here not only intend to review the endo- and ectoparasite fauna of large whales but also to provide new insights in current available methods for gathering parasitological data by using non- or minimally invasive sampling techniques. We focus on methods, which will allow detailed parasitological studies to gain a broader knowledge on parasitoses affecting wild, free-swimming large whale populations.
    Description: We acknowledge funds and support from the Portuguese Fundação para a Ciência e a Tecnologia (FCT), Fundo Regional da Ciência, Tecnologia (FRCT), through research projects TRACE-PTDC/MAR/74071/2006 and MAPCET-M2.1.2/F/012/2011 [FEDER, the Competitiveness Factors Operational (COMPETE), QREN European Social Fund, and Proconvergencia Açores/EU Program]. We acknowledge funds provided by FCT to MARE and by the FRCT – Government of the Azores pluriannual funding. RP is supported by a research grant from the Azores Regional Fund for Science and Technology (M3.1.5/F/115/2012). MAS is supported by FCT through a Program Investigator FCT fellowship (IF/00943/2013).
    Keywords: Cetaceans ; Whales ; Neozoan parasites ; Entamoeba ; Balantidium ; Giardia
    Repository Name: Woods Hole Open Access Server
    Type: Article
    Format: application/pdf
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 174
    Publication Date: 2022-05-25
    Description: This paper is not subject to U.S. copyright. The definitive version was published in Palaeogeography, Palaeoclimatology, Palaeoecology 451 (2016): 73-83, doi:10.1016/j.palaeo.2016.03.018.
    Description: Sea-level records from atolls, potentially spanning the Cenozoic, have been largely overlooked, in part because the processes that control atoll form (reef accretion, carbonate dissolution, sediment transport, vertical motion) are complex and, for many islands, unconstrained on million-year timescales. Here we combine existing observations of atoll morphology and corelog stratigraphy from Enewetak Atoll with a numerical model to (1) constrain the relative rates of subsidence, dissolution and sedimentation that have shaped modern Pacific atolls and (2) construct a record of sea level over the past 8.5 million years. Both the stratigraphy from Enewetak Atoll (constrained by a subsidence rate of ~ 20 m/Myr) and our numerical modeling results suggest that low sea levels (50–125 m below present), and presumably bi-polar glaciations, occurred throughout much of the late Miocene, preceding the warmer climate of the Pliocene, when sea level was higher than present. Carbonate dissolution through the subsequent sea-level fall that accompanied the onset of large glacial cycles in the late Pliocene, along with rapid highstand constructional reef growth, likely drove development of the rimmed atoll morphology we see today.
    Description: Support for this work was provided through a Jackson School Distinguished Postdoctoral Fellowship to Michael Toomey.
    Keywords: Reef ; Coral ; Dissolution ; Late Miocene ; Oxygen isotope stack
    Repository Name: Woods Hole Open Access Server
    Type: Article
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 175
    Publication Date: 2022-05-25
    Description: © The Author(s), 2016. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Neurobiology of Aging 47 (2016): 113–126, doi:10.1016/j.neurobiolaging.2016.07.015.
    Description: Misfolded tau proteins are characteristic of tauopathies, but the isoform composition of tau inclusions varies by tauopathy. Using aggregates of the longest tau isoform (containing 4 microtubule-binding repeats and 4-repeat tau), we recently described a direct mechanism of toxicity that involves exposure of the N-terminal phosphatase-activating domain (PAD) in tau, which triggers a signaling pathway that disrupts axonal transport. However, the impact of aggregation on PAD exposure for other tau isoforms was unexplored. Here, results from immunochemical assays indicate that aggregation-induced increases in PAD exposure and oligomerization are common features among all tau isoforms. The extent of PAD exposure and oligomerization was larger for tau aggregates composed of 4-repeat isoforms compared with those made of 3-repeat isoforms. Most important, aggregates of all isoforms exhibited enough PAD exposure to significantly impair axonal transport in the squid axoplasm. We also show that PAD exposure and oligomerization represent common pathological characteristics in multiple tauopathies. Collectively, these results suggest a mechanism of toxicity common to each tau isoform that likely contributes to degeneration in different tauopathies.
    Description: This work was supported by NIH grants R01 AG044372 (Nicholas M. Kanaan), R01 NS082730 (Nicholas M. Kanaan and Scott T. Brady), BrightFocus Foundation (A2013364S, Nicholas M. Kanaan), the Jean P. Schultz Biomedical Research Endowment (Nicholas M. Kanaan), the Secchia Family Foundation (Nicholas M. Kanaan) and NS066942A (Gerardo Morfini).
    Keywords: Tauopathy ; Alzheimer's disease ; Oligomer ; Axon ; Aggregation ; Microtubule-associated protein ; Pathological conformations
    Repository Name: Woods Hole Open Access Server
    Type: Article
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 176
    Publication Date: 2022-05-25
    Description: © The Author(s), 2017. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Soil Biology and Biochemistry 110 (2017): 68-78, doi:10.1016/j.soilbio.2017.03.002.
    Description: As earth's climate continues to warm, it is important to understand how the capacity of terrestrial ecosystems to retain carbon (C) will be affected. We combined measurements of microbial activity with the concentration, quality, and physical accessibility of soil carbon to microorganisms to evaluate the mechanisms by which more than two decades of experimental warming has altered the carbon cycle in a Northeast US temperate deciduous forest. We found that concentrations of soil organic matter were reduced in both the organic and mineral soil horizons. The molecular composition of the carbon was altered in the mineral soil with significant reductions in the relative abundance of polysaccharides and lignin, and an increase in lipids. Mineral-associated organic matter was preferentially depleted by warming in the top 3 cm of mineral soil. We found that potential extracellular enzyme activity per gram of soil at a common temperature was generally unaffected by warming treatment. However, by measuring potential extracellular enzyme activities between 4 and 30 °C, we found that activity per unit microbial biomass at in-situ temperatures was increased by warming. This was associated with a tendency for microbial biomass to decrease with warming. These results indicate that chronic warming has reduced soil organic matter concentrations, selecting for a smaller but more active microbial community increasingly dependent on mineral-associated organic matter.
    Description: Funding for this project came from Department of Energy Terrestrial Ecosystems Sciences division grant DE-SC0010740 to JMM and KMD. Additional support came from the University of Massachusetts, Amherst, the National Science Foundation Long-Term Ecological Research program (LTER) grant 1237491 to Harvard Forest, and a Sigma Xi grant G20141015649466 to GP.
    Keywords: Soil carbon ; Climate feedbacks ; Enzyme activity ; Microbial adaptation
    Repository Name: Woods Hole Open Access Server
    Type: Article
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 177
    Publication Date: 2022-05-25
    Description: © The Author(s), 2017. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Redox Biology 13 (2017): 207–218, doi:10.1016/j.redox.2017.05.023.
    Description: Redox signaling is important for embryogenesis, guiding pathways that govern processes crucial for embryo patterning, including cell polarization, proliferation, and apoptosis. Exposure to pro-oxidants during this period can be deleterious, resulting in altered physiology, teratogenesis, later-life diseases, or lethality. We previously reported that the glutathione antioxidant defense system becomes increasingly robust, including a doubling of total glutathione and dynamic shifts in the glutathione redox potential at specific stages during embryonic development in the zebrafish, Danio rerio. However, the mechanisms underlying these changes are unclear, as is the effectiveness of the glutathione system in ameliorating oxidative insults to the embryo at different stages. Here, we examine how the glutathione system responds to the model pro-oxidants tert-butylhydroperoxide and tert-butylhydroquinone at different developmental stages, and the role of Nuclear factor erythroid 2-related factor (Nrf) proteins in regulating developmental glutathione redox status. Embryos became increasingly sensitive to pro-oxidants after 72 h post-fertilization (hpf), after which the duration of the recovery period for the glutathione redox potential was increased. To determine whether the doubling of glutathione or the dynamic changes in glutathione redox potential are mediated by zebrafish paralogs of Nrf transcription factors, morpholino oligonucleotides were used to knock down translation of Nrf1 and Nrf2 (nrf1a, nrf1b, nrf2a, nrf2b). Knockdown of Nrf1a or Nrf1b perturbed glutathione redox state until 72 hpf. Knockdown of Nrf2 paralogs also perturbed glutathione redox state but did not significantly affect the response of glutathione to pro-oxidants. Nrf1b morphants had decreased gene expression of glutathione synthesis enzymes, while hsp70 increased in Nrf2b morphants. This work demonstrates that despite having a more robust glutathione system, embryos become more sensitive to oxidative stress later in development, and that neither Nrf1 nor Nrf2 alone appear to be essential for the response and recovery of glutathione to oxidative insults.
    Description: This research was supported by several NIH grants, including F32ES028085 (to KES), F32ES017585 (to ART-L), F32ES019832 (to LMW), P20GM103423 (to LMW), R01ES025748 (to ART-L), R01ES015912 (JJS), and R01ES016366 (MEH). Additional research support was provided by the J. Seward Johnson Fund at WHOI and the WHOI Postdoctoral Scholar Award with funding from Walter A. and Hope Noyes Smith (to ART-L).
    Keywords: Embryonic development ; Glutathione ; Oxidative stress ; Redox ; Zebrafish ; Antioxidant
    Repository Name: Woods Hole Open Access Server
    Type: Article
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 178
    Publication Date: 2022-05-25
    Description: © The Author(s), 2016. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Computers & Geosciences 100 (2017): 76–86, doi:10.1016/j.cageo.2016.12.010.
    Description: Emergent and submerged vegetation can significantly affect coastal hydrodynamics. However, most deterministic numerical models do not take into account their influence on currents, waves, and turbulence. In this paper, we describe the implementation of a wave-flow-vegetation module into a Coupled-Ocean-Atmosphere-Wave-Sediment Transport (COAWST) modeling system that includes a flow model (ROMS) and a wave model (SWAN), and illustrate various interacting processes using an idealized shallow basin application. The flow model has been modified to include plant posture-dependent three-dimensional drag, in-canopy wave-induced streaming, and production of turbulent kinetic energy and enstrophy to parameterize vertical mixing. The coupling framework has been updated to exchange vegetation-related variables between the flow model and the wave model to account for wave energy dissipation due to vegetation. This study i) demonstrates the validity of the plant posture-dependent drag parameterization against field measurements, ii) shows that the model is capable of reproducing the mean and turbulent flow field in the presence of vegetation as compared to various laboratory experiments, iii) provides insight into the flow-vegetation interaction through an analysis of the terms in the momentum balance, iv) describes the influence of a submerged vegetation patch on tidal currents and waves separately and combined, and v) proposes future directions for research and development.
    Description: This study was part of the Estuarine Physical Response to Storms project (GS2-2D), supported by the Department of Interior Hurricane Sandy Recovery program.
    Keywords: Flexible aquatic vegetation ; Coastal hydrodynamics ; Numerical modeling
    Repository Name: Woods Hole Open Access Server
    Type: Article
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 179
    Publication Date: 2022-05-25
    Description: This paper is not subject to U.S. copyright. The definitive version was published in Palaeogeography, Palaeoclimatology, Palaeoecology 469 (2017): 159-160, doi:10.1016/j.palaeo.2016.11.028.
    Repository Name: Woods Hole Open Access Server
    Type: Article
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 180
    Publication Date: 2022-05-25
    Description: © The Author(s), 2016. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Deep Sea Research Part II: Topical Studies in Oceanography 137 (2017): 297–306, doi:10.1016/j.dsr2.2016.05.007.
    Description: The current standard for large-volume (thousands of cubic meters) zooplankton sampling in the deep sea is the MOCNESS, a system of multiple opening–closing nets, typically lowered to within 50 m of the seabed and towed obliquely to the surface to obtain low-spatial-resolution samples that integrate across 10 s of meters of water depth. The SyPRID (Sentry Precision Robotic Impeller Driven) sampler is an innovative, deep-rated (6000 m) plankton sampler that partners with the Sentry Autonomous Underwater Vehicle (AUV) to obtain paired, large-volume plankton samples at specified depths and survey lines to within 1.5 m of the seabed and with simultaneous collection of sensor data. SyPRID uses a perforated Ultra-High-Molecular-Weight (UHMW) plastic tube to support a fine mesh net within an outer carbon composite tube (tube-within-a-tube design), with an axial flow pump located aft of the capture filter. The pump facilitates flow through the system and reduces or possibly eliminates the bow wave at the mouth opening. The cod end, a hollow truncated cone, is also made of UHMW plastic and includes a collection volume designed to provide an area where zooplankton can collect, out of the high flow region. SyPRID attaches as a saddle-pack to the Sentry vehicle. Sentry itself is configured with a flight control system that enables autonomous survey paths to low altitudes. In its verification deployment at the Blake Ridge Seep (2160 m) on the US Atlantic Margin, SyPRID was operated for 6 h at an altitude of 5 m. It recovered plankton samples, including delicate living larvae, from the near-bottom stratum that is seldom sampled by a typical MOCNESS tow. The prototype SyPRID and its next generations will enable studies of plankton or other particulate distributions associated with localized physico-chemical strata in the water column or above patchy habitats on the seafloor.
    Description: This work is part of the SeepC Project funded by the National Science Foundation through OCE-1031050 (Van Dover) and 1030453 (Young), together with funds for development of SyPRID and Sentry operations (OCE-1036843; A Bowen, WHOI).
    Keywords: Plankton surveys ; Meroplankton ; Deep water
    Repository Name: Woods Hole Open Access Server
    Type: Article
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 181
    Publication Date: 2022-05-25
    Description: © The Author(s), 2017. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Marine Geology 385 (2017): 304–327, doi:10.1016/j.margeo.2016.12.012.
    Description: Benthic storms are episodic periods of strong abyssal currents and intense, benthic nepheloid (turbid) layer development. In order to interpret the driving forces that create and sustain these storms, we synthesize measurements of deep ocean currents, nephelometer-based particulate matter (PM) concentrations, and seafloor time-series photographs collected during several science programs that spanned two decades in the western North Atlantic. Benthic storms occurred in areas with high sea-surface eddy kinetic energy, and they most frequently occurred beneath the meandering Gulf Stream or its associated rings, which generate deep cyclones, anticyclones, and/or topographic waves; these create currents with sufficient bed-shear stress to erode and resuspend sediment, thus initiating or enhancing benthic storms. Occasionally, strong currents do not correspond with large increases in PM concentrations, suggesting that easily erodible sediment was previously swept away. Periods of moderate to low currents associated with high PM concentrations are also observed; these are interpreted as advection of PM delivered as storm tails from distal storm events. Outside of areas with high surface and deep eddy kinetic energy, benthic nepheloid layers are weak to non-existent, indicating that benthic storms are necessary to create and maintain strong nepheloid layers. Origins and intensities of benthic storms are best identified using a combination of time-series measurements of bottom currents, PM concentration, and bottom photographs, and these should be coupled with water-column and surface-circulation data to better interpret the specific relations between shallow and deep circulation patterns. Understanding the generation of benthic nepheloid layers is necessary in order to properly interpret PM distribution and its influence on global biogeochemistry.
    Description: Funding for construction of the Bottom Ocean Monitor was provided by Lamont-Doherty Geological Observatory (now Lamont-Doherty Earth Observatory). BOM and mooring deployments and data analysis were funded by the Office of Naval Research (contracts N00014-75-C-0210 and N00014-80-C-0098 to Biscaye and Gardner at Lamont-Doherty; Contracts N00014-79-C-0071 and N00014-82-C-0019 at Woods Hole Oceanographic Institution and ONR Contracts N00014-75-C-0210 and N00014-80-C-0098 at Lamont-Doherty Geological Observatory to Tucholke), Sandia National Laboratories (contract SL-16-5279 to Gardner), the National Science Foundation (contract OCE 1536565 to Gardner and Richardson), Earl F. Cook Professorship (Gardner), and the Department of Energy (contract DE-FG02-87ER-60555 to Biscaye).
    Keywords: Benthic storms ; Benthic nepheloid layer ; Abyssal currents ; Seafloor erosion ; Eddy kinetic energy ; Cyclogenesis
    Repository Name: Woods Hole Open Access Server
    Type: Article
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 182
    Publication Date: 2022-05-25
    Description: This paper is not subject to U.S. copyright. The definitive version was published in Deep Sea Research Part II: Topical Studies in Oceanography 152 (2018): 67-81, doi:10.1016/j.dsr2.2018.05.020.
    Description: Ocean acidification (OA), driven by rising anthropogenic carbon dioxide (CO2), is rapidly advancing in the Pacific Arctic Region (PAR), producing conditions newly corrosive to biologically important carbonate minerals like aragonite. Naturally short linkages across the PAR food web mean that species-specific acidification stress can be rapidly transmitted across multiple trophic levels, resulting in widespread impacts. Therefore, it is critical to understand the formation, transport, and persistence of acidified conditions in the PAR in order to better understand and project potential impacts to this delicately balanced ecosystem. Here, we synthesize data from process studies across the PAR to show the formation of corrosive conditions in colder, denser winter-modified Pacific waters over shallow shelves, resulting from the combination of seasonal terrestrial and marine organic matter respiration with anthropogenic CO2. When these waters are subsequently transported off the shelf, they acidify the Pacific halocline. We estimate that Barrow Canyon outflow delivers ~2.24 Tg C yr-1 to the Arctic Ocean through corrosive winter water transport. This synthesis also allows the combination of spatial data with temporal data to show the persistence of these conditions in halocline waters. For example, one study in this synthesis indicated that 0.5–1.7 Tg C yr-1 may be returned to the atmosphere via air-sea gas exchange of CO2 during upwelling events along the Beaufort Sea shelf that bring Pacific halocline waters to the ocean surface. The loss of CO2 during these events is more than sufficient to eliminate corrosive conditions in the upwelled Pacific halocline waters. However, corresponding moored and discrete data records indicate that potentially corrosive Pacific waters are present in the Beaufort shelfbreak jet during 80% of the year, indicating that the persistence of acidified waters in the Pacific halocline far outweighs any seasonal mitigation from upwelling. Across the datasets in this large-scale synthesis, we estimate that the persistent corrosivity of the Pacific halocline is a recent phenomenon that appeared between 1975 and 1985. Over that short time, these potentially corrosive waters originating over the continental shelves have been observed as far as the entrances to Amundsen Gulf and M’Clure Strait in the Canadian Arctic Archipelago. The formation and transport of corrosive waters on the Pacific Arctic shelves may have widespread impact on the Arctic biogeochemical system and food web reaching all the way to the North Atlantic.
    Description: National Science Foundation Grant PLR-1303617.
    Keywords: Ocean acidification ; Pacific Arctic ; Arctic Ocean ; East Siberian Sea ; Chukchi Sea ; Beaufort Sea ; Transport ; Arctic Rivers ; Sea Ice ; Respiration ; Upwelling ; Biological vulnerability ; Community resilience
    Repository Name: Woods Hole Open Access Server
    Type: Article
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 183
    Publication Date: 2022-05-25
    Description: Author Posting. © The Author(s), 2019. This is the author's version of the work. It is posted here by permission of Elsevier Ltd. for personal use, not for redistribution. The definitive version was published in Geochimica et Cosmochimica Acta 244 (2019): 216-228, doi:10.1016/j.gca.2018.10.012.
    Description: Mountain glaciers store dissolved organic carbon (DOC) that can be exported to river networks and subsequently respired to CO2. Despite this potential importance within the global carbon cycle, the seasonal variability and downstream transport of glacier-derived DOC in mountainous river basins remains largely unknown. To provide novel insight, here we present DOC concentrations and molecular-level dissolved organic matter (DOM) compositions from 22 nested, glaciated catchments (1.4 – 81.8 % glacier cover by area) in the Upper Ganges Basin, Western Himalaya over the course of the Indian summer monsoon (ISM) in 2014. Aliphatic and peptide-like compounds were abundant in glaciated headwaters but were overprinted by soil-derived phenolic, polyphenolic and condensed aromatic material as DOC concentrations increase moving downstream. Across the basin, DOC concentrations and soil-derived compound class contributions decreased sharply from pre- to post-ISM, implying increased relative contribution of glaciated headwater signals as the monsoon progresses. Incubation experiments further revealed a strong compositional control on the fraction of bioavailable DOC (BDOC), with glacier-derived DOC exhibiting the highest bioavailability. We hypothesize that short-term (i.e. in the coming decades) increases in glacier melt flux driven by climate change will further bias exported DOM toward an aliphatic-rich, bioavailable signal, especially during the ISM and post-ISM seasons. In contrast, eventual decreases in glacier melt flux due to mass loss will likely lead to more a soil-like DOM composition and lower bioavailability of exported DOC in the long term.
    Description: We thank Britta Voss (WHOI) for assisting with sample collection; Travis Drake (FSU), and Ekaterina Bulygina (Woods Hole Research Center) for laboratory assistance; and the NHMFL ICR user program (NSF-DMR-1157490) for aiding in data acquisition and analysis. This study was partly supported by NSF-DEB-1145932 to R.G.M.S. J.D.H. was partially supported by the NSF Graduate Research Fellowship Program under grant number 2012126152, with additional support in the form of travel grants awarded by the MIT Houghten Fund and NHMFL. All data used in this study are available in the Supporting Information Tables S1 and S2.
    Keywords: Dissolved organic matter ; Eco-hydrology ; Glaciers ; Himalaya ; Monsoon
    Repository Name: Woods Hole Open Access Server
    Type: Preprint
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 184
    Publication Date: 2022-05-25
    Description: © The Author(s), 2019. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Fringer, O. B., Dawson, C. N., He, R., Ralston, D. K., & Zhang, Y. J. The future of coastal and estuarine modeling: findings from a workshop. Ocean Modelling, 143, (2019): 101458, doi:10.1016/j.ocemod.2019.101458.
    Description: This paper summarizes the findings of a workshop convened in the United States in 2018 to discuss methods in coastal and estuarine modeling and to propose key areas of research and development needed to improve their accuracy and reliability. The focus of this paper is on physical processes, and we provide an overview of the current state-of-the-art based on presentations and discussions at the meeting, which revolved around the four primary themes of parameterizations, numerical methods, in-situ and remote-sensing measurements, and high-performance computing. A primary outcome of the workshop was agreement on the need to reduce subjectivity and improve reproducibility in modeling of physical processes in the coastal ocean. Reduction of subjectivity can be accomplished through development of standards for benchmarks, grid generation, and validation, and reproducibility can be improved through development of standards for input/output, coupling and model nesting, and reporting. Subjectivity can also be reduced through more engagement with the applied mathematics and computer science communities to develop methods for robust parameter estimation and uncertainty quantification. Such engagement could be encouraged through more collaboration between the forward and inverse modeling communities and integration of more applied math and computer science into oceanography curricula. Another outcome of the workshop was agreement on the need to develop high-resolution models that scale on advanced HPC systems to resolve, rather than parameterize, processes with horizontal scales that range between the depth and the internal Rossby deformation scale. Unsurprisingly, more research is needed on parameterizations of processes at scales smaller than the depth, including parameterizations for drag (including bottom roughness, bedforms, vegetation and corals), wave breaking, and air–sea interactions under strong wind conditions. Other topics that require significantly more work to better parameterize include nearshore wave modeling, sediment transport modeling, and morphodynamics. Finally, it was agreed that coastal models should be considered as key infrastructure needed to support research, just like laboratory facilities, field instrumentation, and research vessels. This will require a shift in the way proposals related to coastal ocean modeling are reviewed and funded.
    Description: We thank Carmen Torres at Stanford University and Jennifer Warrillow at North Carolina State University for their assistance with workshop logistics. Helpful comments and suggestions were provided by two anonymous reviewers and Hans Burchard and John Warner. The workshop and preparation of this paper were funded by U.S. National Science Foundation Grant OCE-1749613.
    Keywords: Coastal ocean modeling ; Physical processes ; Model subjectivity ; Development of standards ; High-resolution modeling ; Parameter estimation
    Repository Name: Woods Hole Open Access Server
    Type: Article
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 185
    Publication Date: 2022-05-25
    Description: © The Author(s), 2014. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Estuarine, Coastal and Shelf Science 151 (2014): 54-68, doi:10.1016/j.ecss.2014.09.018.
    Description: We describe the long-term response of benthic metabolism in depositional sediments of Boston Harbor, MA, to large reductions in organic matter and nutrient loading. Although Boston Harbor received very high loadings of nutrients and solids it differs from many eutrophic estuaries in that severe hypoxia was prevented by strong tidal flushing. Our study was conducted for 9 years during which a series of improvements to sewage treatment were implemented, followed by 10 years after the culminating step in the clean-up, which was to divert all wastewater effluent offshore. Counter to expectations, sediment oxygen demand and nutrient effluxes initially increased at some stations, reaching some of the highest rates recorded in the literature, and were spatially and temporally quite variable. Early increases were attributed to macrofaunal effects, as sediments at some sites were rapidly colonized by tube-building amphipods, Ampelisca spp., which dominated a dense macrofaunal mat community. As reductions in loading progressed, however, mean rates in oxygen uptake and release of ammonium, nitrate, and phosphate all decreased. At the point of outfall diversion, rates and variability had already decreased substantially. By the end of the study, average oxygen uptake had decreased from 74 to 41 mmol m−2 d−1 and spatial and temporal variability had decreased. Similarly, nutrient fluxes were less than half the rates measured at the start of the project and also less variable. Other evidence of improved conditions included a decrease in the carbon content of sediments at most stations and higher Eh values at all stations, illustrating less reducing conditions. Denitrification also showed an overall decrease from the beginning to the end of the 19-year study, but was highest during the intermediate phases of the cleanup, reaching 9 mmol N m−2 d−1. At the end of the study denitrification averaged for all sites was 2.2 mmol N m−2 d−1, but when compared to current loadings, had become a more important overall sink for N within the harbor. Few long-term examinations of the responses of sediment biogeochemistry to reductions in nutrient and organic matter loading have been reported. Our findings demonstrate that benthic fluxes may respond to reductions in loading in complex ways, and sediments need not represent a long-term legacy that would impede ecosystems recovery.
    Description: We gratefully acknowledge support for this work from the Massachusetts Water Resources Authority, which was provided through seven contracts for the Harbor and Outfall Monitoring Program to Battelle (Duxbury, MA) or ENSR (Westford, MA), and subcontracts to us.
    Keywords: Sediment metabolism ; Coastal marine sediments ; Nutrient reductions ; Denitrification ; Sewage treatment ; Bioirrigation
    Repository Name: Woods Hole Open Access Server
    Type: Article
    Format: application/pdf
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 186
    Publication Date: 2022-05-25
    Description: © The Author(s), 2015. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Toxicology and Applied Pharmacology 284 (2015): 54-64, doi:10.1016/j.taap.2015.02.001.
    Description: Many persistent organic pollutants (POPs) accumulate readily in polar bears because of their position as apex predators in Arctic food webs. The pregnane X receptor (PXR, formally NR1I2, here proposed to be named promiscuous xenobiotic receptor) is a xenobiotic sensor that is directly involved in metabolizing pathways of a wide range of environmental contaminants. In the present study, we comparably assess the ability of 51 selected pharmaceuticals, pesticides and emerging contaminants to activate PXRs from polar bears and humans using an in vitro luciferase reporter gene assay. We found that polar bear PXR is activated by a wide range of our test compounds (68%) but has a slightly more narrow ligand specificity than human PXR that was activated by 86% of the 51 test compounds. The majority of the agonists identified (70%) produces a stronger induction of the reporter gene via human PXR than via polar bear PXR, however with some notable and environmentally relevant exceptions. Due to the observed differences in activation of polar bear and human PXRs, exposure of each species to environmental agents is likely to induce biotransformation differently in the two species. Bioinformatics analyses and structural modeling studies suggest that amino acids that are not part of the ligand-binding domain and do not interact with the ligand can modulate receptor activation.
    Description: This study has been funded by the Research Council of Norway, Program for Norwegian Environmental Research towards 2015 (MILJØ2015, 181888), Superfund Research Program5P42ES007381 to JJS, and NIH grant R21HD073805 to JVG.
    Keywords: In vitro ligand activation ; Pregnane X receptor ; Polar bear ; Human ; Environmental pollutants
    Repository Name: Woods Hole Open Access Server
    Type: Article
    Format: application/pdf
    Format: application/msword
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 187
    Publication Date: 2022-05-25
    Description: © The Author(s), 2015. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in GeoResJ 6 (2015): 108-114, doi:10.1016/j.grj.2015.02.012.
    Description: Over the course of a scientific career, a large fraction of the data collected by scientific investigators turns into data at risk of becoming inaccessible to future science. Although a part of the investigators’ data is made available in manuscripts and databases, other data may remain unpublished, non-digital, on degrading or near obsolete digital media, or inadequately documented for reuse. In 2013, Integrated Earth Data Applications (IEDA) provided data rescue mini-awards to three Earth science investigators. IEDA’s user communities in geochemistry, petrology, geochronology, and marine geophysics collect long-tail data, defined as data produced by individuals and small teams for specific projects, tending to be of small volume and initially for use only by these teams, thus being less likely to be easily transferred or reused. Long-tail data are at greater risk of omission from the scientific record. The awarded projects topics were (1) Geochemical and Geochronological data on volcanic rocks from the Fiji, Izu-Bonin-Mariana arc, and Endeavor segments of the global mid-ocean ridge, (2) High-Resolution, Near-bottom Magnetic Field Data, and (3) Geochemistry of Lunar Glasses. IEDA worked closely with the awardees to create a plan for the data rescue, resulting in the registration of hundreds of samples and the entry of dozens of data and documentation files into IEDA data systems. The data were made openly accessible and citable by assigning persistent identifiers for samples and files. The mini-award program proved that a relatively small incentive combined with data facility guidance can motivate investigators to accomplish significant data rescue.
    Description: This work was funded by the IEDA cooperative agreement, U.S. NSF Award0950477.
    Keywords: Data rescue ; Persistent identifiers ; Long-tail data ; Lunar samples ; Analytical geochemistry ; Ocean-bottom magnetics
    Repository Name: Woods Hole Open Access Server
    Type: Article
    Format: application/pdf
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 188
    Publication Date: 2022-05-25
    Description: © The Author(s), 2014. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Deep Sea Research Part II: Topical Studies in Oceanography 116 (2015): 283-302, doi:10.1016/j.dsr2.2014.11.019.
    Description: In this paper, we present, describe, and model the first size-fractionated (0.8–51 µm; 〉51 µm) water-column particulate trace metal results from the US GEOTRACES North Atlantic Zonal Transect in situ pumping survey, with a focus on the lithogenic tracer elements Al, Fe and Ti. This examination of basin-wide, full-depth distributions of particulate elements elucidates many inputs and processes—some for bulk lithogenic material, others element-specific—which are presented via concentration distributions, elemental ratios, size-fractionation dynamics, and steady-state inventories. Key lithogenic inputs from African dust, North American boundary interactions, the Mediterranean outflow, hydrothermal systems, and benthic nepheloid layers are described. Using the refractory lithogenic tracer Ti, we develop a 1-D model for lithogenic particle distributions and test the sensitivities of size-fractionated open-ocean particulate Ti profiles to biotically driven aggregation, disaggregation rates, vertical sinking speeds, and dust input rates. We discuss applications of this lithogenic model to particle cycling in general, and to POC cycling specifically.
    Description: International and US GEOTRACES Offices (OCE-0850963 and OCE-1129603), and fellowship assistance from the Williams College Tyng Fellowship and MIT/WHOI Academic Programs Office to DCO.
    Keywords: Marine particles ; Lithogenic ; Particulate trace metals ; Aluminum ; Iron ; Titanium ; GEOTRACES ; Aeolian dust ; Aggregation ; Disaggregation ; Sinking speed ; Scavenging
    Repository Name: Woods Hole Open Access Server
    Type: Article
    Format: application/pdf
    Format: application/msword
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 189
    Publication Date: 2022-05-25
    Description: © The Author(s), 2014. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Progress in Oceanography 136 (2015): 71-91, doi:10.1016/j.pocean.2014.07.001.
    Description: The highly productive fisheries of Alaska are located in seas projected to experience strong global change, including rapid transitions in temperature and ocean acidification-driven changes in pH and other chemical parameters. Many of the marine organisms that are most intensely affected by ocean acidification (OA) contribute substantially to the state’s commercial fisheries and traditional subsistence way of life. Prior studies of OA’s potential impacts on human communities have focused only on possible direct economic losses from specific scenarios of human dependence on commercial harvests and damages to marine species. However, other economic and social impacts, such as changes in food security or livelihoods, are also likely to result from climate change. This study evaluates patterns of dependence on marine resources within Alaska that could be negatively impacted by OA and current community characteristics to assess the potential risk to the fishery sector from OA. Here, we used a risk assessment framework based on one developed by the Intergovernmental Panel on Climate Change to analyze earth-system global ocean model hindcasts and projections of ocean chemistry, fisheries harvest data, and demographic information. The fisheries examined were: shellfish, salmon and other finfish. The final index incorporates all of these data to compare overall risk among Alaska’s federally designated census areas. The analysis showed that regions in southeast and southwest Alaska that are highly reliant on fishery harvests and have relatively lower incomes and employment alternatives likely face the highest risk from OA. Although this study is an intermediate step toward our full understanding, the results presented here show that OA merits consideration in policy planning, as it may represent another challenge to Alaskan communities, some of which are already under acute socio-economic strains.
    Description: This study is part of the Synthesis of Arctic Research (SOAR) and was funded in part by the U.S. Department of the Interior, Bureau of Ocean Energy Management, Environmental Studies Program through Interagency Agreement No. M11PG00034 with the U.S. Department of Commerce, National Oceanic and Atmospheric Administration (NOAA), Office of Oceanic and Atmospheric Research (OAR), Pacific Marine Environmental Laboratory (PMEL).
    Repository Name: Woods Hole Open Access Server
    Type: Article
    Format: application/pdf
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 190
    Publication Date: 2022-05-25
    Description: This paper is not subject to U.S. copyright. The definitive version was published in Continental Shelf Research 104 (2015): 1-14, doi:10.1016/j.csr.2015.05.003.
    Description: This study investigates the relationship between spatial and temporal patterns of wave-driven sediment mobility events on the U.S. East Coast continental shelf and the characteristics of the storms responsible for them. Mobility events, defined as seafloor wave stress exceedance of the critical stress of 0.35 mm diameter sand (0.2160 Pa) for 12 or more hours, were identified from surface wave observations at National Data Buoy Center buoys in the Middle Atlantic Bight (MAB) and South Atlantic Bight (SAB) over the period of 1997–2007. In water depths ranging from 36–48 m, there were 4–9 mobility events/year of 1–2 days duration. Integrated wave stress during events (IWAVES) was used as a combined metric of wave-driven mobility intensity and duration. In the MAB, over 67% of IWAVES was caused by extratropical storms, while in the SAB, greater than 66% of IWAVES was caused by tropical storms. On average, mobility events were caused by waves generated by storms located 800+ km away. Far-field hurricanes generated swell 2–4 days before the waves caused mobility on the shelf. Throughout most of the SAB, mobility events were driven by storms to the south, east, and west. In the MAB and near Cape Hatteras, winds from more northerly storms and low-pressure extratropical systems in the mid-western U.S. also drove mobility events. Waves generated by storms off the SAB generated mobility events along the entire U.S. East Coast shelf north to Cape Cod, while Cape Hatteras shielded the SAB area from swell originating to the north offshore of the MAB.
    Description: This work was funded by the U.S. Geological Survey.
    Keywords: Bottom wave stress ; Seafloor mobility ; Extratropical storms ; Tropical storms ; U.S. East Coast continental shelf
    Repository Name: Woods Hole Open Access Server
    Type: Article
    Format: application/pdf
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 191
    Publication Date: 2022-05-25
    Description: © The Author(s), 2015. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Marine Chemistry 177 (2015): 366–373, doi:10.1016/j.marchem.2015.06.012.
    Description: Metabolomics is the study of small molecules, or ‘metabolites’, that are the end products of biological processes. While -omics technologies such as genomics, transcriptomics, and proteomics measure the metabolic potential of organisms, metabolomics provides detailed information on the organic compounds produced during metabolism and found within cells and in the environment. Improvements in analytical techniques have expanded our understanding of metabolomics and developments in computational tools have made metabolomics data accessible to a broad segment of the scientific community. Yet, metabolomics methods have only been applied to a limited number of projects in the marine environment. Here, we review analysis techniques for mass spectrometry data and summarize the current state of metabolomics databases. We then describe a boutique database developed in our laboratory for efficient data analysis and selection of mass spectral targets for metabolite identification. The code to implement the database is freely available on GitHub (https://github.com/joefutrelle/domdb). Data organization and analysis are critical, but often under-appreciated, components of metabolomics research. Future advances in environmental metabolomics will take advantage of continued development of new tools that facilitate analysis of large metabolomics datasets.
    Description: The field data populating the database comes from scientific cruises funded by grants from the National Science Foundation to EBK and KL (Atlantic Ocean, OCE-1154320) and E.V. Armbrust (Pacific Ocean, OCE-1205233). The laboratory experiment with coastal seawater was funded by a grant from the Gulf of Mexico Research Initiative to EBK and H.K. White. The laboratory experiments with microbial isolates and the database development are funded by the Gordon and Betty Moore Foundation through Grant GBMF3304 to EBK.
    Keywords: Metabolomics ; Data analysis ; Database design
    Repository Name: Woods Hole Open Access Server
    Type: Article
    Format: application/pdf
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 192
    Publication Date: 2022-05-25
    Description: This paper is not subject to U.S. copyright. The definitive version was published in Marine Geology 381 (2016): 42–53, doi:10.1016/j.margeo.2016.08.008.
    Description: Behavior of coastal systems on time scales ranging from single storm events to years and decades is controlled by both small-scale sediment transport processes and large-scale geologic, oceanographic, and morphologic processes. Improved understanding of coastal behavior at multiple time scales is required for refining models that predict potential erosion hazards and for coastal management planning and decision-making. Here we investigate the primary controls on shoreline response along a geologically-variable barrier island on time scales resolving extreme storms and decadal variations over a period of nearly one century. An empirical orthogonal function analysis is applied to a time series of shoreline positions at Fire Island, NY to identify patterns of shoreline variance along the length of the island. We establish that there are separable patterns of shoreline behavior that represent response to oceanographic forcing as well as patterns that are not explained by this forcing. The dominant shoreline behavior occurs over large length scales in the form of alternating episodes of shoreline retreat and advance, presumably in response to storms cycles. Two secondary responses include long-term response that is correlated to known geologic variations of the island and the other reflects geomorphic patterns with medium length scale. Our study also includes the response to Hurricane Sandy and a period of post-storm recovery. It was expected that the impacts from Hurricane Sandy would disrupt long-term trends and spatial patterns. We found that the response to Sandy at Fire Island is not notable or distinguishable from several other large storms of the prior decade.
    Description: Funding for this research was provided by the USGS Coastal and Marine Geology Program and the USGS Natural Resource Preservation Program.
    Keywords: Shoreline change ; Coastal evolution ; Storm response ; Empirical orthogonal function ; Fire Island
    Repository Name: Woods Hole Open Access Server
    Type: Article
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 193
    Publication Date: 2022-05-25
    Description: © The Author(s), 2017. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Theoretical Population Biology 114 (2017): 107-116, doi:10.1016/j.tpb.2017.01.001.
    Description: Inter-individual variance in longevity (or any other demographic outcome) may arise from heterogeneity or from individual stochasticity. Heterogeneity refers to differences among individuals in the demographic rates experienced at a given age or stage. Stochasticity refers to variation due to the random outcome of demographic rates applied to individuals with the same properties. The variance due to individual stochasticity can be calculated from a Markov chain description of the life cycle. The variance due to heterogeneity can be calculated from a multistate model that incorporates the heterogeneity. We show how to use this approach to decompose the variance in longevity into contributions from stochasticity and heterogeneous frailty for male and female cohorts from Sweden (1751–1899), France (1816–1903), and Italy (1872–1899), and also for a selection of period data for the same countries. Heterogeneity in mortality is described by the gamma-Gompertz–Makeham model, in which a gamma distributed “frailty” modifies a baseline Gompertz–Makeham mortality schedule. Model parameters were estimated by maximum likelihood for a range of starting ages. The estimates were used to construct an age××frailty-classified matrix model, from which we compute the variance of longevity and its components due to heterogeneous frailty and to individual stochasticity. The estimated fraction of the variance in longevity due to heterogeneous frailty (averaged over time) is less than 10% for all countries and for both sexes. These results suggest that most of the variance in human longevity arises from stochasticity, rather than from heterogeneous frailty.
    Description: This work was supported by European Research Council Advanced Grant 322989 (to NH and HC), National Science Foundation Grant DEB-1257545 (to HC), and the Max Planck Society (to TIM).
    Keywords: Individual stochasticity ; Heterogeneous frailty ; Variance ; Longevity ; Age–frailty classified matrix model ; Gamma-Gompertz–Makeham
    Repository Name: Woods Hole Open Access Server
    Type: Article
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 194
    Publication Date: 2022-05-25
    Description: This paper is not subject to U.S. copyright. The definitive version was published in Earth and Planetary Science Letters 462 (2017): 180-188, doi:10.1016/j.epsl.2016.12.039.
    Description: Water flow beneath the Greenland Ice Sheet (GrIS) has been shown to include slow-inefficient (distributed) and fast-efficient (channelized) drainage systems, in response to meltwater delivery to the bed via both moulins and surface lake drainage. This partitioning between channelized and distributed drainage systems is difficult to quantify yet it plays an important role in bulk meltwater chemistry and glacial velocity, and thus subglacial erosion. Radon-222, which is continuously produced via the decay of 226Ra, accumulates in meltwater that has interacted with rock and sediment. Hence, elevated concentrations of 222Rn should be indicative of meltwater that has flowed through a distributed drainage system network. In the spring and summer of 2011 and 2012, we made hourly 222Rn measurements in the proglacial river of a large outlet glacier of the GrIS (Leverett Glacier, SW Greenland). Radon-222 activities were highest in the early melt season (10–15 dpm L−1), decreasing by a factor of 2–5 (3–5 dpm L−1) following the onset of widespread surface melt. Using a 222Rn mass balance model, we estimate that, on average, greater than 90% of the river 222Rn was sourced from distributed system meltwater. The distributed system 222Rn flux varied on diurnal, weekly, and seasonal time scales with highest fluxes generally occurring on the falling limb of the hydrograph and during expansion of the channelized drainage system. Using laboratory based estimates of distributed system 222Rn, the distributed system water flux generally ranged between 1–5% of the total proglacial river discharge for both seasons. This study provides a promising new method for hydrograph separation in glacial watersheds and for estimating the timing and magnitude of distributed system fluxes expelled at ice sheet margins.
    Description: U.S. National Science Foundation Arctic Natural Sciences Program (ANS-1256669); Woods Hole Oceanographic Institution Arctic Research Initiative, Ocean Ventures Fund, and Ocean Climate Change Institute; United Kingdom Natural Environment Research Council studentship (NE/152830X/1); the Carnegie Trust, Edinburgh University Development Trust.
    Keywords: Radon ; Greenland ; Glacier ; Proglacial river ; Meltwater
    Repository Name: Woods Hole Open Access Server
    Type: Article
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 195
    Publication Date: 2022-05-25
    Description: This paper is not subject to U.S. copyright. The definitive version was published in Marine Geology 380 (2016): 284–289, doi:10.1016/j.margeo.2016.04.008.
    Description: Rivers have long been recognized for their ability to shape reef-bound volcanic islands. On the time-scale of glacial–interglacial sea-level cycles, fluvial incision of exposed barrier reef lagoons may compete with constructional coral growth to shape the coastal geomorphology of ocean islands. However, overprinting of Pleistocene landscapes by Holocene erosion or sedimentation has largely obscured the role lowstand river incision may have played in developing the deep lagoons typical of modern barrier reefs. Here we use high-resolution seismic imagery and core stratigraphy to examine how erosion and/or deposition by upland drainage networks has shaped coastal morphology on Tahaa, a barrier reef-bound island located along the Society Islands hotspot chain in French Polynesia. At Tahaa, we find that many channels, incised into the lagoon floor during Pleistocene sea-level lowstands, are located near the mouths of upstream terrestrial drainages. Steeper antecedent topography appears to have enhanced lowstand fluvial erosion along Tahaa's southwestern coast and maintained a deep pass. During highstands, upland drainages appear to contribute little sediment to refilling accommodation space in the lagoon. Rather, the flushing of fine carbonate sediment out of incised fluvial channels by storms and currents appears to have limited lagoonal infilling and further reinforced development of deep barrier reef lagoons during periods of highstand submersion.
    Description: This project was supported by a Jackson School Distinguished Postdoctoral Fellowship to Michael Toomey and the WHOI Coastal Ocean Institute and Ocean and Climate Change Institute.
    Keywords: Coral ; Island ; Lagoon ; Dissolution ; Morphology
    Repository Name: Woods Hole Open Access Server
    Type: Article
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 196
    Publication Date: 2022-05-25
    Description: © The Author(s), 2016. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Developmental Biology 426 (2017): 442–448, doi:10.1016/j.ydbio.2016.05.028.
    Description: Injection of human Chorionic Gonadotropin (hCG) directly into the dorsal lymph sac of Xenopus is a commonly used protocol for induction of ovulation, but recent shortages in the stocks of commercially available hCG as well as lack of a well tested alternative have resulted in frustrating experimental delays in laboratories that predominantly use Xenopus in their research. Mammalian Luteinizing Hormones (LH) share structural similarity, functional equivalency, and bind the same receptor as hCG; this suggests that LH may serve as a good alternative to hCG for promoting ovulation in Xenopus. LH has been found to induce maturation of Xenopus oocytes in vitro, but whether it can be used to induce ovulation in vivo has not been examined. Here we compared the ability of four mammalian LH proteins, bovine (bLH), human (hLH), ovine (oLH), porcine (pLH), to induce ovulation in Xenopus when injected into the dorsal lymph sac of sexually mature females. We find that both ovine and human LH, but not bovine or porcine, are good substitutes for hCG for induction of ovulation in WT and J strain Xenopus laevis and Xenopus tropicalis.
    Description: This work was supported by a grant from the NIHP40OD010997.
    Keywords: Xenopus laevis ; J strain ; Luteinizing Hormone ; Ovulation ; Chorionic gonadotropin
    Repository Name: Woods Hole Open Access Server
    Type: Article
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 197
    Publication Date: 2022-05-25
    Description: © The Author(s), 2016. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Developmental Biology 426 (2017): 325-335, doi:10.1016/j.ydbio.2016.04.009.
    Description: The amphibian model Xenopus, has been used extensively over the past century to study multiple aspects of cell and developmental biology. Xenopus offers advantages of a non-mammalian system, including high fecundity, external development, and simple housing requirements, with additional advantages of large embryos, highly conserved developmental processes, and close evolutionary relationship to higher vertebrates. There are two main species of Xenopus used in biomedical research, Xenopus laevis and Xenopus tropicalis; the common perception is that both species are excellent models for embryological and cell biological studies, but only Xenopus tropicalis is useful as a genetic model. The recent completion of the Xenopus laevis genome sequence combined with implementation of genome editing tools, such as TALENs (transcription activator-like effector nucleases) and CRISPR-Cas (clustered regularly interspaced short palindromic repeats-CRISPR associated nucleases), greatly facilitates the use of both Xenopus laevis and Xenopus tropicalis for understanding gene function in development and disease. In this paper, we review recent advances made in Xenopus laevis and Xenopus tropicalis with TALENs and CRISPR-Cas and discuss the various approaches that have been used to generate knockout and knock-in animals in both species. These advances show that both Xenopus species are useful for genetic approaches and in particular counters the notion that Xenopus laevis is not amenable to genetic manipulations.
    Description: This work was supported by the National Institutes of Health (P40 OD010997 to M.E.H., R01 HD084409 to M.E.H., R01 HL112618 to P.T. and F.C., and R01 HL127640 to P.T. and F.C.; and the U.S. Environmental Protection Agency (G11E10367 to D.F.).
    Keywords: CRISPR-Cas ; TALENs ; J strain ; Xenopus laevis ; Xenopus tropicalis ; Knock-in ; Human disease model
    Repository Name: Woods Hole Open Access Server
    Type: Article
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 198
    Publication Date: 2022-05-25
    Description: This paper is not subject to U.S. copyright. The definitive version was published in Geochimica et Cosmochimica Acta 209 (2017): 123-134, doi:10.1016/j.gca.2017.04.006.
    Description: Coral barium to calcium (Ba/Ca) ratios have been used to reconstruct records of upwelling, river and groundwater discharge, and sediment and dust input to the coastal ocean. However, this proxy has not yet been explicitly tested to determine if Ba inclusion in the coral skeleton is directly proportional to seawater Ba concentration and to further determine how additional factors such as temperature and calcification rate control coral Ba/Ca ratios. We measured the inclusion of Ba within aquaria reared juvenile corals (Favia fragum) at three temperatures (∼27.7, 24.6 and 22.5 °C) and three seawater Ba concentrations (73, 230 and 450 nmol kg−1). Coral polyps were settled on tiles conditioned with encrusting coralline algae, which complicated chemical analysis of the coral skeletal material grown during the aquaria experiments. We utilized Sr/Ca ratios of encrusting coralline algae (as low as 3.4 mmol mol−1) to correct coral Ba/Ca for this contamination, which was determined to be 26 ± 11% using a two end member mixing model. Notably, there was a large range in Ba/Ca across all treatments, however, we found that Ba inclusion was linear across the full concentration range. The temperature sensitivity of the distribution coefficient is within the range of previously reported values. Finally, calcification rate, which displayed large variability, was not correlated to the distribution coefficient. The observed temperature dependence predicts a change in coral Ba/Ca ratios of 1.1 μmol mol−1 from 20 to 28 °C for typical coastal ocean Ba concentrations of 50 nmol kg−1. Given the linear uptake of Ba by corals observed in this study, coral proxy records that demonstrate peaks of 10–25 μmol mol−1 would require coastal seawater Ba of between 60 and 145 nmol kg−1. Further validation of the coral Ba/Ca proxy requires evaluation of changes in seawater chemistry associated with the environmental perturbation recorded by the coral as well as verification of these results for Porites species, which are widely used in paleo reconstructions.
    Description: M.E.G. was supported by a NDSEG graduate fellowship. Funding for this research came from the NSF Chemical Oceanography program (OCE-0751525) and the Coastal Ocean Institute, the Ocean and Climate Change Institute and the Ocean Ventures Fund at Woods Hole Oceanographic Institution.
    Keywords: Coral Ba/Ca ; Barium ; Aragonite ; Distribution coefficient ; Favia fragum
    Repository Name: Woods Hole Open Access Server
    Type: Article
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 199
    Publication Date: 2022-05-25
    Description: © The Author(s), 2017. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Landscape and Urban Planning 165 (2017): 54-63, doi:10.1016/j.landurbplan.2017.05.004.
    Description: Residential lawns are highly managed ecosystems that occur in urbanized landscapes across the United States. Because they are ubiquitous, lawns are good systems in which to study the potential homogenizing effects of urban land use and management together with the continental-scale effects of climate on ecosystem structure and functioning. We hypothesized that similar homeowner preferences and management in residential areas across the United States would lead to low plant species diversity in lawns and relatively homogeneous vegetation across broad geographical regions. We also hypothesized that lawn plant species richness would increase with regional temperature and precipitation due to the presence of spontaneous, weedy vegetation, but would decrease with household income and fertilizer use. To test these predictions, we compared plant species composition and richness in residential lawns in seven U.S. metropolitan regions. We also compared species composition in lawns with understory vegetation in minimally-managed reference areas in each city. As expected, the composition of cultivated turfgrasses was more similar among lawns than among reference areas, but this pattern also held among spontaneous species. Plant species richness and diversity varied more among lawns than among reference areas, and more diverse lawns occurred in metropolitan areas with higher precipitation. Native forb diversity increased with precipitation and decreased with income, driving overall lawn diversity trends with these predictors as well. Our results showed that both management and regional climate shaped lawn species composition, but the overall homogeneity of species regardless of regional context strongly suggested that management was a more important driver.
    Description: This research was supported by the Macrosystems Biology Program in the Emerging Frontiers Division of the Biological Sciences Directorate at the National Science Foundation (NSF) under grants EF-1065548, 1065737, 1065740, 1065741, 1065772, 1065785, 1065831, and 121238320.
    Keywords: Homogenization ; Lawn ; Residential yards ; Species composition ; Turfgrass
    Repository Name: Woods Hole Open Access Server
    Type: Article
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 200
    Publication Date: 2022-05-25
    Description: © The Author(s), 2016. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Journal of Hydrology: Regional Studies 11 (2017): 147-165, doi:10.1016/j.ejrh.2015.12.056.
    Description: The study region encompasses the nearshore, coastal waters off west Maui, Hawaii. Here abundant groundwater—that carries with it a strong land-based fingerprint—discharges into the coastal waters and over a coral reef. Coastal groundwater discharge is a ubiquitous hydrologic feature that has been shown to impact nearshore ecosystems and material budgets. A unique combined geochemical tracer and oceanographic time-series study addressed rates and oceanic forcings of submarine groundwater discharge at a submarine spring site off west Maui, Hawaii. Estimates of submarine groundwater discharge were derived for a primary vent site and surrounding coastal waters off west Maui, Hawaii using an excess 222Rn (t1/2 = 3.8 d) mass balance model. Such estimates were complemented with a novel thoron (220Rn, t1/2 = 56 s) groundwater discharge tracer application, as well as oceanographic time series and thermal infrared imagery analyses. In combination, this suite of techniques provides new insight into the connectivity of the coastal aquifer with the near-shore ocean and examines the physical drivers of submarine groundwater discharge. Lastly, submarine groundwater discharge derived constituent concentrations were tabulated and compared to surrounding seawater concentrations. Such work has implications for the management of coastal aquifers and downstream nearshore ecosystems that respond to sustained constituent loadings via this submarine route.
    Description: This research was primarily funded by the USGS Coastal and Marine Geology Program (CMGP). CRG acknowledges support from the National Oceanic and Atmospheric Administration, Project R/SB-12, which is sponsored by the University of Hawaii Sea Grant College Program, SOEST, under Institutional Grant No. NA14OAR4170071 from NOAA Office of Sea Grant, Department of Commerce.
    Keywords: Regional groundwater flow ; Submarine groundwater discharge ; Radon ; Thoron ; Thermal infrared ; Oceanographic time series ; Salinity
    Repository Name: Woods Hole Open Access Server
    Type: Article
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
Close ⊗
This website uses cookies and the analysis tool Matomo. More information can be found here...