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  • 1
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    Copernicus
    Publikationsdatum: 2013-06-07
    Beschreibung: A cloud-to-ground lightning climatology for north-eastern Italy Advances in Science and Research, 10, 77-84, 2013 Author(s): L. Feudale, A. Manzato, and S. Micheletti This study analyzes the spatial distribution and temporal characteristics of cloud-to-ground lightnings (C2G) in the North East of Italy and the neighboring areas of Austria, Slovenia and Croatia. The dataset consists of about 6.5 millions C2G flash records, both positive and negative, observed between January 1995 and December 2011 by the "Centro Elettrotecnico Sperimentale Italiano-Sistema Italiano Rilevamento Fulmini'' (CESI/SIRF), part of the European Cooperation for Lightning Detection (EUCLID) Network. The results show that C2G lightnings concentrate in the foothill regions on the southern flank of the Eastern Alps with a maximum of discharge frequency of 10 lightnings per km 2 per year. The number of C2G strokes varies with the period of the year: the most active period for lightning starts in April and lasts through November with the highest number of C2G strokes happening during the summer months of July and August, with maximum spatial density slightly moving from the mountain to the coastal area. The least frequency of C2G strokes is observed during wintertime. The mean diurnal C2G lightning activity for the whole domain shows a peak around 16:00–17:00 UTC and reaches a minimum around 07:00–09:00 UTC; the mean spatial distribution follows different patterns depending on the period of the day.
    Print ISSN: 1992-0628
    Digitale ISSN: 1992-0636
    Thema: Allgemeine Naturwissenschaft
    Publiziert von Copernicus
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  • 2
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    Oxford University Press
    Publikationsdatum: 2013-06-12
    Print ISSN: 0022-0744
    Digitale ISSN: 1477-9986
    Thema: Elektrotechnik, Elektronik, Nachrichtentechnik , Allgemeine Naturwissenschaft , Physik
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  • 3
    Publikationsdatum: 2013-06-12
    Beschreibung: Polysaccharides account for more than 90% of the content of fungal cell walls, but the mechanism underlying the formation of the architecture of the cell walls, which consist of microfibrils embedded in an amorphous wall matrix, remains unknown. We used electron microscopy to investigate ten different fungal cell-wall polysaccharides to determine whether they could self-assemble into the fibrillar or amorphous component of fungal cell walls in a test tube without enzymes. The ultrastructures formed by precipitating β-1,3-glucan and β-1,6-glucan are different depending on the existence of branching in the molecule. Linear β-1,3-glucan and linear β-1,6-glucan precipitate into a fibrillar ultrastructure. Branched β-1,6-glucan, mannan and glycogen precipitates are amorphous. Branched β-1,3-glucan forms a fibrillar plus amorphous ultrastructure. Self-assembly among combinations of different linear and branched cell-wall polysaccharides results in an ultrastructure that resembles that of a yeast cell wall, which suggests that self-assembly of polysaccharides may participate in the development of the three-dimensional architecture of the yeast cell wall.
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    Thema: Elektrotechnik, Elektronik, Nachrichtentechnik , Allgemeine Naturwissenschaft , Physik
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  • 4
    Publikationsdatum: 2013-06-11
    Beschreibung: Multivariate testing of spatio-temporal consistence of daily precipitation records Advances in Science and Research, 10, 85-90, 2013 Author(s): H. Mächel and A. Kapala The project KLIDADIGI of the German Meteorological Service (DWD) systematically rescues historical daily climate data of Germany by keying and imaging. Up to now, daily nearly gap-free precipitation time series at 118 locations for the period 1901–2000 are collected and extended by digitalization of hand-written protocols. To screen the spatio-temporal consistence of these raw data, we apply principal component analysis (PCA) in S (spatial) mode for daily precipitation records as well as for indices such as the number of rainy days above a certain threshold, intensity and absolute daily maximum in monthly, seasonal or annual resolution. Results of this screening test indicate that the PCA is a useful tool for detection of questionable stations and data preprocessing for further quality control and homogenization.
    Print ISSN: 1992-0628
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    Thema: Allgemeine Naturwissenschaft
    Publiziert von Copernicus
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  • 5
    Publikationsdatum: 2013-06-12
    Beschreibung: When considering drug delivery, the amount of drug that can be carried at a particular time and how the drug is incorporated efficiently into cells are important parameters. Transferrin (Tf)-conjugated nanocarriers have been used for the targeted delivery of drugs to cancer cells due to the availability of receptor-mediated clathrin-dependent endocytosis. In general, however, endocytosis seems to differ according to the size and shape of carriers. Large substances are generally internalized into cells by phagocytosis. We studied the internalization mechanism of Tf-conjugated nanoparticles (diameter, 522 nm). Tf-conjugated polystyrene particles were incorporated into cells by receptor-mediated endocytosis with large clathrin-coated vesicles even though their diameter was 〉500 nm and despite that fact that clathrin-coated vesicles have a diameter of 100 nm. This finding suggests that signals for internalization generated by stimulated Tf receptors (TfRs) activate clathrin-mediated endocytosis preferentially. Whether these larger particles could deliver drugs more efficiently than smaller particles was then examined. The toxicity of larger Tf-conjugated biodegradable nanoparticles (poly(lactic-co-glycolic acid)) encapsulating doxorubicin (diameter, 216 ± 38 nm) was appreciably dependent on the number of Tf molecules conjugated on a particle and the number of TfRs expressed on the cell membrane. Larger Tf-conjugated particles delivered drugs to cancer cells expressing many TfRs more selectively than their smaller counterparts (diameter, 56 ± 9 nm) if they were decorated with an appropriate number of Tf molecules.
    Print ISSN: 0022-0744
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    Thema: Elektrotechnik, Elektronik, Nachrichtentechnik , Allgemeine Naturwissenschaft , Physik
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  • 6
    Publikationsdatum: 2013-06-12
    Beschreibung: Structural biology relies on good-quality protein crystals in order for structure determination. Many factors affect the growth process of a protein crystal including the way it nucleates and the types of damage and contamination during its growth. Although the nucleation process and quality of a crystal is vital to structure determination, they are both under-studied areas of research. Our research begins to explore ways of measuring the quality of protein crystals, using TEM, thus overcoming the problems associated with viewing wet specimens in a vacuum. Our current understanding of nucleation is that it is a two-step mechanism involving the formation of nuclei from dense liquid clusters; however; it is still unclear whether nuclei first start as amorphous aggregates or as crystalline lattices. Potentially, electron diffraction may be capable of uncovering this process. Using TEM imaging and diffraction of lysozyme as a model protein crystal, we report the internal two-dimensional strain and the density of crystallites in a protein crystal, at a resolution never seen before. The TEM diffraction shows unique features of crystal mosaicity that can be directly correlated to TEM images.
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    Thema: Elektrotechnik, Elektronik, Nachrichtentechnik , Allgemeine Naturwissenschaft , Physik
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  • 7
    Publikationsdatum: 2013-06-12
    Beschreibung: The cotyledon of legume seeds is a storage organ that provides nutrients for seed germination and seedling growth. The spatial and temporal control of the degradation processes within cotyledons has not been elucidated. Calcium oxalate (CaOx) crystals, a common calcium deposit in plants, have often been reported to be present in legume seeds. In this study, micro-computed tomography (micro-CT) was employed at the SPring-8 facility to examine the three-dimensional distribution of crystals inside cotyledons during seed maturation and germination of Lotus miyakojimae (previously Lotus japonicus accession Miyakojima MG-20). Using this technique, we could detect the outline of the embryo, void spaces in seeds and the cotyledon venation pattern. We found several sites that strongly inhibited X-ray transmission within the cotyledons. Light and polarizing microscopy confirmed that these areas corresponded to CaOx crystals. Three-dimensional observations of dry seeds indicated that the CaOx crystals in the L. miyakojimae cotyledons were distributed along lateral veins; however, their distribution was limited to the abaxial side of the procambium. The CaOx crystals appeared at stage II (seed-filling stage) of seed development, and their number increased in dry seeds. The number of crystals in cotyledons was high during germination, suggesting that CaOx crystals are not degraded for their calcium supply. Evidence for the conservation of CaOx crystals in cotyledons during the L. miyakojimae germination process was also supported by the biochemical measurement of oxalic acid levels.
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    Thema: Elektrotechnik, Elektronik, Nachrichtentechnik , Allgemeine Naturwissenschaft , Physik
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  • 8
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    Oxford University Press
    Publikationsdatum: 2013-06-12
    Beschreibung: The electron irradiation damage of MFI-type zeolite was estimated under various accelerating voltages of 100, 200 and 300 kV from successively captured high-resolution transmission electron microscopy (HRTEM) images. To determine the optimal accelerating voltage for HRTEM imaging of electron-sensitive MFI zeolite, the critical dose was estimated from the disappearance of a specific fast Fourier transform spot calculated from experimental images. Based only on the electron dose, a higher voltage was more advantageous. However, taking into account the minimum dose for imaging with a CCD camera, the optimal accelerating voltage for imaging MFI zeolite was 200 kV. The minimum dose for image detection with a CCD camera was surmised from the output/input signal ratio dependence on the accelerating voltage and the contrast range in simulated HRTEM images.
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    Thema: Elektrotechnik, Elektronik, Nachrichtentechnik , Allgemeine Naturwissenschaft , Physik
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  • 9
    Publikationsdatum: 2013-06-12
    Beschreibung: The magnetic field generated by a magnetic recording head is evaluated using electron holography. A magnetic recording head, which is connected to an electric current source, is set on the specimen holder of a transmission electron microscope. Reconstructed phase images of the region around the magnetic pole show the change in the magnetic field distribution corresponding to the electric current applied to the coil of the head. A simulation of the magnetic field, which is conducted using the finite element method, reveals good agreement with the experimental observations.
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    Thema: Elektrotechnik, Elektronik, Nachrichtentechnik , Allgemeine Naturwissenschaft , Physik
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  • 10
    Publikationsdatum: 2013-06-12
    Beschreibung: A new multilayer-coated varied line-spaced grating, JS4000, was fabricated and tested for extending the upper limit of a grating X-ray spectrometer for electron microscopy. This grating was designed for 2–3.8 keV at a grazing incidence angle of 1.35°. It was revealed that this new multilayer structure enables us to take soft-X-ray emission spectra continuously from 1.5 to 4.3 keV at the same optical setting. The full-width at half maximum of Te-L α1,2 (3.8 keV) emission peak was 27 eV. This spectrometer was applied to indium tin oxide particles and clearly resolved Sn-L α (3444 eV) and In-L β1 (3487 eV) peaks, which could not be resolved by a widely used energy-dispersive X-ray spectrometer.
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    Thema: Elektrotechnik, Elektronik, Nachrichtentechnik , Allgemeine Naturwissenschaft , Physik
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  • 11
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    Oxford University Press
    Publikationsdatum: 2013-04-02
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    Thema: Elektrotechnik, Elektronik, Nachrichtentechnik , Allgemeine Naturwissenschaft , Physik
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  • 12
    Publikationsdatum: 2013-04-02
    Beschreibung: For development of advanced materials, characterization using a scanning transmission electron microscope (STEM) including analysis via X-ray energy-dispersive spectrometry and electron energy-loss spectrometry is essential. Recent advances in aberration-corrected instruments have offered large-scale data acquisition at a high resolution for limited acquisition times both in imaging and in analysis. Further advanced procedures are required to analyze such large-scale datasets more efficiently including quantification. In addition, more simplified tuning procedures are crucial to the best possible resolution in the latest aberration-corrected instruments. In this review article, several approaches to perform advanced electron microscopy, which the author has been developing with his colleague, are described as ‘Microscopy Hacks’. These are (i) quantification and elemental/chemical-imaging procedures, (ii) advanced statistical approaches to handle large-scale datasets and (iii) instrument characterization and tuning procedures including the latest development of an ad hoc autotuning procedure for aberration-corrected STEM imaging.
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    Thema: Elektrotechnik, Elektronik, Nachrichtentechnik , Allgemeine Naturwissenschaft , Physik
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  • 13
    Publikationsdatum: 2013-04-02
    Beschreibung: The crystal structure of a new type of molybdenum oxide crystal encapsulated in a single-walled carbon nanotube (CNT) was examined via diffraction and spectroscopic techniques using both X-rays and electron beams. This new type of molybdenum oxide crystal has a chemical bonding state of MoO 3 , as confirmed by X-ray absorption spectroscopy, and the MoO 3 units exhibit axial symmetry, as clarified by electron diffraction from bundled and individual CNTs encapsulating the crystal. To obtain three-dimensional information on the structure, a cross-sectional sample was prepared using a conventional dimple and ion-mill method. High-resolution transmission electron microscopy images exhibit ring-like shapes that originated from the arrangement of the MoO 3 units inside the CNTs, as observed along the tube axis. The units are spaced 0.36 nm from each other in a ring arrangement and the distance between each ring is 0.391 nm.
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    Thema: Elektrotechnik, Elektronik, Nachrichtentechnik , Allgemeine Naturwissenschaft , Physik
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  • 14
    Publikationsdatum: 2013-04-02
    Beschreibung: This review summarizes the recent advances in three-dimensional (3D) imaging techniques and their application to polymer nanostructures, for example, microphase-separated structures of block copolymers. We place particular emphasis on the method of transmission electron microtomography (electron tomography for short; hereafter abbreviated as ET). As a result of recent developments in ET, truly quantitative 3D images of polymer nanostructures can now be obtained with subnanometer resolution. The introduction of scanning optics in ET has made it possible to obtain large amounts of 3D data from micrometer-thick polymer specimens by using conventional electron microscopes at a relatively low accelerating voltage, 200 kV. Thus, ET covers structures over a wide range of thicknesses, from a few nanometers to several hundred nanometers, which corresponds to quite an important spatial range for hierarchical polymer nanostructures. ET provides clear 3D images and a wide range of new structural information that cannot be obtained using other methods. Information traditionally derived from conventional microscopy or scattering methods can be directly acquired from 3D volume data. ET is a versatile technique that is not restricted to only polymer applications; it can also be used as a powerful characterization tool in energy applications such as fuel cells.
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    Thema: Elektrotechnik, Elektronik, Nachrichtentechnik , Allgemeine Naturwissenschaft , Physik
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  • 15
    Publikationsdatum: 2013-04-02
    Beschreibung: The performances of a newly developed 80–200 kV cold field emission gun (CFEG) transmission electron microscope (TEM) integrating a spherical aberration corrector for a TEM image-forming lens have been evaluated. To begin, we show that the stability of both emission and probe currents makes use of this new CFEG much friendlier. The energy spread of electrons emitted from the CFEG has been measured as a function of emission current and shows a very last 0.26 eV energy resolution at 200 kV and even 0.23 eV at 80 kV. The combination of the CFEG and the CEOS™ aberration corrector, associated with enhanced mechanical and electrical stabilities of this new microscope, allows reaching an information transfer below 75 pm at 200 and 80 pm at 80 kV. This unseen resolution at 200 kV has allowed us to study the structure of CoPt nanoparticles by observing direct images of their atomic arrangement along the high indexes zone axis. We have evidenced the presence of defects in these nanostructures that are not parallel to the electron beam. The precise stoichiometry of two iron oxides, FeO and Fe 2 O 3 , has been determined from an analysis of iron valence state that was obtained from a direct analysis of EELS fine structures spectrum of the two oxides.
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    Thema: Elektrotechnik, Elektronik, Nachrichtentechnik , Allgemeine Naturwissenschaft , Physik
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  • 16
    Publikationsdatum: 2013-04-02
    Beschreibung: Data mining from noisy data/images is one of the most important themes in modern science and technology. Statistical image processing is a promising technique for analysing such data. Automation of particle pickup from noisy electron micrographs is essential, especially when improvement of the resolution of single particle analysis requires a huge number of particle images. For such a purpose, reference-based matching using primary three-dimensional (3D) model projections is mainly adopted. In the matching, however, the highest peaks of the correlation may not accurately indicate particles when the image is very noisy. In contrast, the density and the heights of the peaks should reflect the probability distribution of the particles. To statistically determine the particle positions from the peak distributions, we have developed a density-based peak search followed by a peak selection based on average peak height, using multi-reference alignment (MRA). Its extension, using multi-reference multiple alignment (MRMA), was found to enable particle pickup at higher accuracy even from extremely noisy images with a signal-to-noise ratio of 0.001. We refer to these new methods as stochastic pickup with MRA (MRA-StoPICK) or with MRMA (MRMA-StoPICK). MRMA-StoPICK has a higher pickup accuracy and furthermore, is almost independent of parameter settings. They were successfully applied to cryo-electron micrographs of Rice dwarf virus. Because current computational resources and parallel data processing environments allow somewhat CPU-intensive MRA-StoPICK and MRMA-StoPICK to be performed in a short period, these methods are expected to allow high-resolution analysis of the 3D structure of particles.
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    Thema: Elektrotechnik, Elektronik, Nachrichtentechnik , Allgemeine Naturwissenschaft , Physik
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  • 17
    Publikationsdatum: 2013-04-02
    Beschreibung: The sensory nerve endings of the rat tongue, cheek and palate were studied using immunohistochemical staining and transmission electron microscopy analysis. The specimens were fixed in modified Karnovsky solution and embedded in Spurr resin. Substance P, calcitonin gene-related peptide (CGRP)- and protein gene product 9.5 (PGP b9.5)-containing nerve fibers in the rat tongue, cheek and palate were examined by electronic microscopical analysis and immunohistochemical localization. These fibers run very close to the basal lamina of the epithelium and extend into the filliform and fungiform papillae. Numerous plexiform fibers immunoreactive for substance P, CGRP and PGP 9.5 were found in the connective tissue of mucosa. Electron microscopic observations showed clearly immunostained nerve fibers, which are located very close to the basal lamina of epithelial cells. Some electron-dense granules may be observed in the axoplasms of both substance P and CGRP immunoreactive fibers. Several lamellar corpuscles into the subepithelial connective tissue papillae, Merkel corpuscles and numerous thin unmyelinated and myelinated axons were observed. The terminal axons revealed numerous mitochondria, neurofilaments, microtubules and clear vesicles in the base of axoplasmic protrusions. The lamellar cells showed caveolae and interlamelar spaces filled by amorphous substance. Between the lamellar cells and axoplasmic membrane, and in the adjacent lamellae region, desmosome-type junctions were observed. The quantitative and morphometric analysis showed nerve endings with an average area of 4.83 ± 3.4 μm 2 and 19.4 internal mitochondria in this site and the organized corpuscles with an average area of 79.24 ± 27.24 μm 2 and 24.23 internal mitochondria in this place. All the structures observed are involved in the transmission of pain and mechanoreceptors stimulus of these oral mucosae.
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    Thema: Elektrotechnik, Elektronik, Nachrichtentechnik , Allgemeine Naturwissenschaft , Physik
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  • 18
    Publikationsdatum: 2013-04-02
    Beschreibung: The F-actin cytoskeleton of Cryptococcus neoformans is known to comprise actin cables, cortical patches and cytokinetic ring. Here, we describe a new F-actin structure in fungi, a perinuclear F-actin collar ring around the cell nucleus, by fluorescent microscopic imaging of rhodamine phalloidin-stained F-actin. Perinuclear F-actin rings form in Cryptococcus neoformans treated with the microtubule inhibitor Nocodazole or with the drug solvent dimethyl sulfoxide (DMSO) or grown in yeast extract peptone dextrose (YEPD) medium, but they are absent in cells treated with Latrunculin A. Perinuclear F-actin rings may function as ‘funicular cabin’ for the cell nucleus, and actin cables as intracellular ‘funicular’ suspending nucleus in the central position in the cell and moving nucleus along the polarity axis along actin cables.
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    Thema: Elektrotechnik, Elektronik, Nachrichtentechnik , Allgemeine Naturwissenschaft , Physik
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  • 19
    Publikationsdatum: 2013-04-02
    Beschreibung: To evaluate the advantages of combination of two advanced electron microscopic technologies such as serial block-face scanning electron microscopy and double-axis electron beam tomography, we analyzed the three-dimensional morphology of cellular relationships between dendritic and plasma cells in the synovial membrane from patients with rheumatoid arthritis, using the combined approach.
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    Thema: Elektrotechnik, Elektronik, Nachrichtentechnik , Allgemeine Naturwissenschaft , Physik
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  • 20
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    Oxford University Press
    Publikationsdatum: 2013-04-02
    Beschreibung: The low-energy Ar-ion milling method was used to prepare ultrathin specimens for transmission electron microscope observation. The samples were thinned initially by a usual focused ion beam technique or typical Ar-ion milling with a high energy of 2–10 keV and were thinned additionally by an Ar-ion beam with an energy less than 1 keV, typically 500–900 eV. This low-energy ion beam was scanned over the specimen, and secondary electrons induced by the ion beam could be detected to form secondary electron images with a resolution of a few micrometre. Because a desired area can be selected and thinned by the low-energy ion beam, redeposition or cross contamination from irradiation of a metal grid that supports the sample can be prevented. It was shown that the low-energy Ar-ion beam thins a surface amorphous damage layer preferentially and effectively rather than a crystal specimen. Images from ultrathin specimens of two different materials revealed a detailed structure.
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  • 21
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    Oxford University Press
    Publikationsdatum: 2013-04-02
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    Thema: Elektrotechnik, Elektronik, Nachrichtentechnik , Allgemeine Naturwissenschaft , Physik
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  • 22
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    Oxford University Press
    Publikationsdatum: 2013-04-02
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    Thema: Elektrotechnik, Elektronik, Nachrichtentechnik , Allgemeine Naturwissenschaft , Physik
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  • 23
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    Copernicus
    Publikationsdatum: 2013-09-10
    Beschreibung: Digital Climate Atlas of the Carpathian Region Advances in Science and Research, 10, 107-111, 2013 Author(s): I. Antolović, V. Mihajlović, D. Rančić, D. Mihić, and V. Djurdjević The main goal of the CARPATCLIM (Climate of the Carpathian Region) project is to construct the gridded climatological database for the region in a daily temporal resolution for the period 1961–2010 by using 0.1° spatial resolution. The solution of this requirement as well as one of the final products of the CARPATCLIM project is a Digital Climate Atlas which is designed as the main entry point for all the gridded data and maps generated during the project, together with metadata for all data sets (original data as well as data created during the project). With respect to the INSPIRE (Infrastructure for Spatial Information in the European Community) directive, the Digital Climate Atlas is developed as a rich Web GIS (Geographic Information System) application based on modern Web standards offering all necessary tools for climate data visualization and extraction. Another important product of the CARPATCLIM project is the Metadata Catalog which is designed as a tool for searching of climate metadata by various parameters (i.e. period, variable, region etc.).
    Print ISSN: 1992-0628
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    Thema: Allgemeine Naturwissenschaft
    Publiziert von Copernicus
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  • 24
    Publikationsdatum: 2011-06-15
    Beschreibung: Analysis of climate hazards in relation to urban designing in Iran Advances in Science and Research, 6, 173-178, 2011 Author(s): S. Alijani and B. Alijani In order to study the climate hazards, daily rainfall and temperature data of 61 weather stations over the country were obtained from the Meteorological Organization of Iran for the 1951–2007 period. The following indices are defined as indications of climate hazards: sultriness of the air or the heat index, cold days with minimum temperature below −5 °C, warm days with maximum temperature above 32 °C, the share of extreme rain days from the annual rainfall. The annual frequencies of these indices are analyzed and the overall hazard index is computed using the Analytical Hierarchical Process method. The results show that the southern coastal areas and central deserts are the most hazardous parts of the country, whereas, the northern Caspian coastal lands and mountainous regions experience lower hazard alerts. The problem of the northern parts is the cold days and that of the southern areas is the hot and humid days. Despite the relatively equal occurrence of torrential rains over the country, they are more harmful in the south than in the other parts of the country.
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    Thema: Allgemeine Naturwissenschaft
    Publiziert von Copernicus
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  • 25
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    Copernicus
    Publikationsdatum: 2011-06-15
    Beschreibung: Soil moisture initialization effects in the Indian monsoon system Advances in Science and Research, 6, 161-165, 2011 Author(s): S. Asharaf, A. Dobler, and B. Ahrens Towards the goal to understand the role of land-surface processes over the Indian sub-continent, a series of soil-moisture sensitivity simulations have been performed using a non-hydrostatic regional climate model COSMO-CLM. The experiments were driven by the lateral boundary conditions provided by the ERA-Interim (ECMWF) reanalysis. The simulation results show that the pre-monsoonal soil moisture has a significant influence on the monsoonal precipitation. Both, positive and negative soil-moisture precipitation (S-P) feedback processes are of importance. The negative S-P feedback process is especially influential in the western and the northern parts of India.
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    Thema: Allgemeine Naturwissenschaft
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  • 26
    facet.materialart.
    Unbekannt
    Copernicus
    Publikationsdatum: 2011-06-15
    Beschreibung: Environmental enrichment for primates in laboratories Advances in Science and Research, 5, 41-56, 2010 Author(s): H. M. Buchanan-Smith Environmental enrichment is a critical component of Refinement, one of the 3Rs underlying humane experimentation on animals. In this paper I discuss why primates housed in laboratories, which often have constraints of space and study protocols, are a special case for enrichment. I outline a framework for categorising the different types of enrichment, using the marmoset as a case study, and summarise the methods used to determine what animals want/prefer. I briefly review the arguments that enrichment does not negatively affect experimental outcomes. Finally I focus on complexity and novelty, choice and control, the underlying features of enrichment that makes it successful, and how combined with a thorough understanding of natural history we can put effective enrichment into practice in laboratories. Throughout the paper I emphasise the need to evaluate enrichment to ensure it is having the desired effect.
    Print ISSN: 1992-0628
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  • 27
    facet.materialart.
    Unbekannt
    Copernicus
    Publikationsdatum: 2011-06-15
    Beschreibung: Homogenising time series: beliefs, dogmas and facts Advances in Science and Research, 6, 167-172, 2011 Author(s): P. Domonkos In the recent decades various homogenisation methods have been developed, but the real effects of their application on time series are still not known sufficiently. The ongoing COST action HOME (COST ES0601) is devoted to reveal the real impacts of homogenisation methods more detailed and with higher confidence than earlier. As a part of the COST activity, a benchmark dataset was built whose characteristics approach well the characteristics of real networks of observed time series. This dataset offers much better opportunity than ever before to test the wide variety of homogenisation methods, and analyse the real effects of selected theoretical recommendations. Empirical results show that real observed time series usually include several inhomogeneities of different sizes. Small inhomogeneities often have similar statistical characteristics than natural changes caused by climatic variability, thus the pure application of the classic theory that change-points of observed time series can be found and corrected one-by-one is impossible. However, after homogenisation the linear trends, seasonal changes and long-term fluctuations of time series are usually much closer to the reality than in raw time series. Some problems around detecting multiple structures of inhomogeneities, as well as that of time series comparisons within homogenisation procedures are discussed briefly in the study.
    Print ISSN: 1992-0628
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  • 28
    Publikationsdatum: 2011-05-13
    Beschreibung: National Climate Observing System of Switzerland (GCOS Switzerland) Advances in Science and Research, 6, 95-102, 2011 Author(s): G. Seiz and N. Foppa In recent decades, the global observation of climate and climate change has become increasingly important. The Global Climate Observing System (GCOS) established in 1992 addresses the entire climate system including physical, chemical and biological properties of atmosphere, ocean and land surface. This paper describes the GCOS implementation in Switzerland and highlights some major achievements over the last few years. The Swiss GCOS Office was established at the Federal Office of Meteorology and Climatology MeteoSwiss in February 2006, to coordinate all climate-relevant measurements in Switzerland. The first-ever inventory of the country's long-term climatological data series and international data centres, including an assessment of their future prospects, was compiled in 2007. The National Climate Observing System of Switzerland (GCOS Switzerland) includes long-term climatological data series in the atmosphere and terrestrial domains, international data and calibration centres, satellite-based products and support of climate observations in developing countries. A major milestone in the surface-based atmospheric observations was the definition of the Swiss National Basic Climatological Network (NBCN), consisting of 29 stations of greatest climatological importance. The NBCN was further densified for precipitation with 46 additional daily precipitation stations (NBCN-P). Analysis of the homogenized timeseries of the average temperature in Switzerland shows a total warming of +1.6 °C from 1864 to 2010. In the terrestrial domain, substantial advances were made in all three subdomains hydrosphere, cryosphere and biosphere. As example for the use of satellite data within GCOS Switzerland, the 10-yr MODIS monthly mean cloud fraction climatology over Switzerland from March 2000 to February 2010 is presented, which illustrates the differences in cloud cover between mountainous regions and flatland regions in winter, as well as the north-south gradient in cloud cover over Switzerland in summer.
    Print ISSN: 1992-0628
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  • 29
    Publikationsdatum: 2011-05-17
    Beschreibung: A modification of the mixed form of Richards equation and its application in vertically inhomogeneous soils Advances in Science and Research, 6, 123-127, 2011 Author(s): F. Kalinka and B. Ahrens Recently, new soil data maps were developed, which include vertical soil properties like soil type. Implementing those into a multilayer Soil-Vegetation-Atmosphere-Transfer (SVAT) scheme, discontinuities in the water content occur at the interface between dissimilar soils. Therefore, care must be taken in solving the Richards equation for calculating vertical soil water fluxes. We solve a modified form of the mixed (soil water and soil matric potential based) Richards equation by subtracting the equilibrium state of soil matrix potential ψ E from the hydraulic potential ψ h . The sensitivity of the modified equation is tested under idealized conditions. The paper will show that the modified equation can handle with discontinuities in soil water content at the interface of layered soils.
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  • 30
    Publikationsdatum: 2014-11-29
    Beschreibung: Off-axis electron holography can be used to measure the inner potential of a specimen from its reconstructed phase image and is thus a powerful technique for materials scientists. However, abrupt reversals of contrast from white to black may sometimes occur in a digitally reconstructed phase image, which results in inaccurate information. Such phase distortion is mainly due to the digital reconstruction process and weak electron wave amplitude in some areas of the specimen. Therefore, digital image processing can be applied to the reconstruction and restoration of phase images. In this paper, fringe reconnection processing is applied to phase image restoration of a crystal structure image. The disconnection and wrong connection of interference fringes in the hologram that directly cause a 2 phase jump imperfection are correctly reconnected. Experimental results show that the phase distortion is significantly reduced after the processing. The quality of the reconstructed phase image was improved by the removal of imperfections in the final phase.
    Print ISSN: 0022-0744
    Digitale ISSN: 1477-9986
    Thema: Elektrotechnik, Elektronik, Nachrichtentechnik , Allgemeine Naturwissenschaft , Physik
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  • 31
    Publikationsdatum: 2014-11-29
    Beschreibung: Diabetes causes oxidative stress, which in turn generates excessive free radicals resulting in cellular damage. Vitamin C is an antioxidant that protects tissues and organs from oxidative stress. The thymus is one of the most important lymphoid organs, which regulates T-lymphocyte proliferation and maturation. The aim of this study is to investigate the protective effects of vitamin C on the thymus of streptozotocin (STZ)-induced diabetic rats. The mitotic activity and cell integrity of thymic lymphocytes were explored. Wistar Albino rats were divided into three groups: control (Group 1), STZ-diabetes (Group 2) and vitamin C-treated STZ-diabetics (Group 3). Rats received a single intraperitoneal injection of 45 mg/kg STZ to induce diabetes. Vitamin C (20 mg/kg) was administered intragastrically. Semithin and ultrathin sections were examined under a light or an electron microscope, respectively. Considerable numbers of mitotic lymphocytes were observed in the thymus of control rats. In the diabetic rats, however, numbers of mitotic lymphocytes decreased to ~57% of controls, and cell division abnormalities were observed. Additionally, diabetic rats showed degeneration in the structure of the thymus including trabecular thickening, accumulation of lipid vacuoles, heterochromatic nuclei and loss of mitochondrial cristae. Degradation of medullar and cortical integrity was also detected. In the vitamin C-treated STZ-diabetic group, the structure of the thymus and mitotic activity of the lymphocytes were similar to the control group. These results suggest that vitamin C protects the thymus against injury caused by diabetes and restores thymocyte mitotic activity.
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  • 32
    facet.materialart.
    Unbekannt
    Oxford University Press
    Publikationsdatum: 2014-11-29
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    Thema: Elektrotechnik, Elektronik, Nachrichtentechnik , Allgemeine Naturwissenschaft , Physik
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  • 33
    Publikationsdatum: 2014-11-29
    Beschreibung: We investigated the stability of Pd/ZnO polar interfaces formed by internal oxidation of Pd–Zn alloys by using high-resolution transmission electron microscopy, electron energy-loss spectroscopy and convergent-beam electron diffraction. At 1273 K, a $$(111{)}_{\mathrm{Pd}}/(000\overline{2}{)}_{\mathrm{ZnO}}$$ polar interface defaceted and transformed into a curved interface, while another (111) Pd /(0002) ZnO polar interface retained its flatness. The $$(111{)}_{\mathrm{Pd}}/(000\overline{2}{)}_{\mathrm{ZnO}}$$ polar interface lost some stability over non-polar interfaces at 1273 K, while the (111) Pd /(0002) ZnO polar interface remained stable.
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  • 34
    Publikationsdatum: 2014-11-29
    Beschreibung: Transmission electron microscope (TEM) observation of light metal hydrides is complicated by the instability of these materials under electron irradiation. In this study, the electron kinetic energy dependences of the interactions of incident electrons with lithium, sodium and magnesium hydrides, as well as the constituting element effect on the interactions, were theoretically discussed, and electron irradiation damage to these hydrides was examined using in situ TEM. The results indicate that high incident electron kinetic energy helps alleviate the irradiation damage resulting from inelastic or elastic scattering of the incident electrons in the TEM. Therefore, observations and characterizations of these materials would benefit from increased, instead decreased, TEM operating voltage.
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  • 35
    Publikationsdatum: 2014-11-29
    Beschreibung: Synaptic plasticity is the process by which long-lasting changes take place at synaptic connections. The phenomenon itself is complex and can involve many levels of organization. Some authors separate forms into adaptations that have positive or negative consequences for the individual. It has been hypothesized that an increase in the number of synapses may represent a structural basis for the enduring expression of synaptic plasticity during some events that involve memory and learning; also, it has been suggested that perforated synapses increase in number after some diseases and experimental situations. The aim of this study was to analyze whether dopamine depletion induces changes in the synaptology of the corpus striatum of rats after the unilateral injection of 6-OHDA. The findings suggest that after the lesion, both contralateral and ipsilateral striata exhibit an increased length of the synaptic ending in ipsilateral (since third day) and contralateral striatum (since Day 20), loss of axospinous synapses in ipsilateral striatum and a significant increment in the number of perforated synapses, suggesting brain plasticity that might be deleterious for the spines, because this type of synaptic contacts are presumably excitatory, and in the absence of the modulatory effects of dopamine, the neuron could die through excitotoxic mechanisms. Thus, we can conclude that the presence of perforated synapses after striatal dopamine depletion might be a form of maladaptive synaptic plasticity.
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  • 36
    Publikationsdatum: 2014-11-29
    Beschreibung: Unlike in vitro protein dynamics, intracellular protein dynamics are intricately regulated by protein–protein interactions or interactions between proteins and other cellular components, including nucleic acids, the plasma membrane and the cytoskeleton. Alteration of these dynamics plays a crucial role in physiological phenomena such as gene expression and cell division. Live-cell imaging via microscopy with the inherent properties of fluorescent proteins, i.e. photobleaching and photoconversion, or fluorescence correlation spectroscopy, provides insight into the movement of proteins and their interactions with cellular components. This article reviews techniques based on photo-induced changes in the physicochemical properties of fluorescent proteins to measure protein dynamics inside living cells, and it also discusses the strengths and weaknesses of these techniques.
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  • 37
    facet.materialart.
    Unbekannt
    Oxford University Press
    Publikationsdatum: 2014-11-29
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    Thema: Elektrotechnik, Elektronik, Nachrichtentechnik , Allgemeine Naturwissenschaft , Physik
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  • 38
    Publikationsdatum: 2014-11-29
    Beschreibung: We have developed a method of atomic force microscopy (AFM)-assisted scanning tunneling spectroscopy (STS) under ambient conditions. An AFM function is used for rapid access to a selected position prior to performing STS. The AFM feedback is further used to suppress vertical thermal drift of the tip–sample distance during spectroscopy, enabling flexible and stable spectroscopy measurements at room temperature.
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  • 39
    Publikationsdatum: 2014-11-29
    Beschreibung: To elucidate high-temperature plastic deformation (creep) mechanism in materials, it is essential to observe dislocation motion under tensile loading. There are many reports on in situ transmission electron microscopy (TEM) observations in the literature; however, the relationship between the dislocation motion and shear stress in 9Cr steel is still not clear. In this study, in order to evaluate this relationship quantitatively, in situ TEM observations were carried out in conjunction with finite element method (FEM) analysis. A tensile test sample was strained at an elevated temperature (903 K) inside a transmission electron microscope, and the stress distribution in the strained sample was analyzed by FEM. The dislocation behavior was clearly found to depend on the shear stress. At a shear stress of 66 MPa, both the dislocation velocity and mobile dislocation density were low. However, a high shear stress level of 95 MPa caused a noticeable increase in the dislocation velocity and mobile dislocation density. Furthermore, in this article, we discuss the dependence of the dislocation behavior on stress. The results presented here also indicate that the relationship between the microstructure and the strength of materials can be revealed by the methods used in this work.
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  • 40
    Publikationsdatum: 2014-11-29
    Beschreibung: A dual-axis 360° rotation specimen holder was developed for use in reconstructing the three-dimensional (3D) distribution of a magnetic field using a combination of electron holography and tomography. Pillar-shaped specimens are used to obtain accurate reconstruction without a missing angle. The holder's rotation rod can be turned 〉360°; the pillar is set ±45° to the azimuth for both x - and y -axis rotation. Two rotation series of holograms in individual axes are recorded for vector field tomography. The two vector components of the magnetic field are reconstructed directly from the two series of holograms, and the remaining component is calculated using Maxwell's equation, div B = 0. As a result, all 3D magnetic fields are reconstructed.
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  • 41
    Publikationsdatum: 2014-11-29
    Beschreibung: A new type of electrochemical cell was developed for in situ transmission electron microscopy observation that enables the electrode materials to be conveniently changed. The electrochemical cell was used to observe the electrochemical growth or dissolution of copper islands on a gold film with simultaneous cyclic voltammetry measurements. The copper islands could be explained by three-dimensional growing model.
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  • 42
    Publikationsdatum: 2011-04-02
    Beschreibung: The future climate characteristics of the Carpathian Basin based on a regional climate model mini-ensemble Advances in Science and Research, 6, 69-73, 2011 Author(s): I. Krüzselyi, J. Bartholy, A. Horányi, I. Pieczka, R. Pongrácz, P. Szabó, G. Szépszó, and Cs. Torma Four regional climate models (RCMs) were adapted in Hungary for the dynamical downscaling of the global climate projections over the Carpathian Basin: (i) the ALADIN-Climate model developed by Météo France on the basis of the ALADIN short-range modelling system; (ii) the PRECIS model available from the UK Met Office Hadley Centre; (iii) the RegCM model originally developed at the US National Center for Atmospheric Research, is maintained at the International Centre for Theoretical Physics in Trieste; and (iv) the REMO model developed by the Max Planck Institute for Meteorology in Hamburg. The RCMs are different in terms of dynamical model formulation, physical parameterisations; moreover, in the completed simulations they use different spatial resolutions, integration domains and lateral boundary conditions for the scenario experiments. Therefore, the results of the four RCMs can be considered as a small ensemble providing information about various kinds of uncertainties in the future projections over the target area, i.e., Hungary. After the validation of the temperature and precipitation patterns against measurements, mean changes and some extreme characteristics of these patterns (including their statistical significance) have been assessed focusing on the periods of 2021–2050 and 2071–2100 relative to the 1961–1990 model reference period. The ensemble evaluation indicates that the temperature-related changes of the different RCMs are in good agreement over the Carpathian Basin and these tendencies manifest in the general warming conditions. The precipitation changes cannot be identified so clearly: seasonally large differences can be recognised among the projections and between the two periods. An overview is given about the results of the mini-ensemble and special emphasis is put on estimating the uncertainties in the simulations for Hungary.
    Print ISSN: 1992-0628
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  • 43
    Publikationsdatum: 2011-04-02
    Beschreibung: A Non-Linear Mixed Spectral Finite-Difference 3-D model for planetary boundary-layer flow over complex terrain Advances in Science and Research, 6, 75-78, 2011 Author(s): W. Weng and P. A. Taylor The Non-Linear Mixed Spectral Finite-Difference (NLMSFD) model for surface boundary-layer flow over complex terrain has been extended to planetary boundary-layer flow over topography. Comparisons are made between this new version and the surface layer model. The model is also applied to simulate an Askervein experimental case. The results are discussed and compared with the observed field data.
    Print ISSN: 1992-0628
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  • 44
    Publikationsdatum: 2011-04-01
    Beschreibung: Correlation between air-sea heat fluxes over the Aegean Sea and the total precipitable water over Europe and North Africa Advances in Science and Research, 6, 63-67, 2011 Author(s): V. P. Papadopoulos, A. Bartzokas, T. Chronis, S. Ruiz, N. Zarokanellos, and G. Ferentinos The relation between the air-sea heat fluxes in the Aegean Sea and the total precipitable water (TPW) over Europe and North Africa is investigated. An one-point linear correlation between the components of surface heat exchange and TPW is employed. During winter and for the shortwave radiation, a dipole of opposite correlation (see-saw teleconnection), is observed between the northeast Europe and the East Mediterranean Sea. This pattern is inverted for the longwave radiation and especially during the summer is limited to a strong positive south pole. Both spatial correlation patterns underline the influence of cloudiness during the winter season and the specific humidity during summer on the radiative fluxes behavior. Regarding the turbulent air-sea heat flux components – latent and sensible heat – the correlation pattern is enhanced. The winter pattern exhibits positive correlation over Europe with the highest values ( r 〉0.75) over the Balkan Peninsula. The identified correlation patterns, although they remain dominant, weaken during the summer. The herein findings suggest that the stronger relation between the TPW and the turbulent fluxes is regulated by the wind regime.
    Print ISSN: 1992-0628
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  • 45
    facet.materialart.
    Unbekannt
    Copernicus
    Publikationsdatum: 2011-05-31
    Beschreibung: Locomotion and postural behaviour Advances in Science and Research, 5, 23-39, 2010 Author(s): M. Schmidt The purpose of this article is to provide a survey of the diversity of primate locomotor behaviour for people who are involved in research using laboratory primates. The main locomotor modes displayed by primates are introduced with reference to some general morphological adaptations. The relationships between locomotor behaviour and body size, habitat structure and behavioural context will be illustrated because these factors are important determinants of the evolutionary diversity of primate locomotor activities. They also induce the high individual plasticity of the locomotor behaviour for which primates are well known. The article also provides a short overview of the preferred locomotor activities in the various primate families. A more detailed description of locomotor preferences for some of the most common laboratory primates is included which also contains information about substrate preferences and daily locomotor activities which might useful for laboratory practice. Finally, practical implications for primate husbandry and cage design are provided emphasizing the positive impact of physical activity on health and psychological well-being of primates in captivity.
    Print ISSN: 1992-0628
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  • 46
    Publikationsdatum: 2011-05-31
    Beschreibung: Assessment of climate vulnerability in the Norwegian built environment Advances in Science and Research, 6, 151-153, 2011 Author(s): H. O. Hygen, C. F. Øyen, and A. J. Almås The main trends expected for the change of Norwegian climate for this century are increasing temperatures, precipitation and wind. This indicates a probable increase of climate-related risks to the Norwegian built environment. Through co-operation between the Norwegian Meteorological Institute and SINTEF Building and Infrastructure, building and climate information have been combined to estimate changes in strain to the built environment due to climate change. The results show that the risk of wood decay will increase for the whole country. Almost two million buildings will be subject to an increase in risk of wood decay from medium to high level. Similar analyses have been performed for other climate indices, demonstrating a clear increase in potential damages due to water and humidity, while frost damage probably will decrease.
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  • 47
    Publikationsdatum: 2011-06-01
    Beschreibung: Atmospheric boundary layer wind profile at a flat coastal site – wind speed lidar measurements and mesoscale modeling results Advances in Science and Research, 6, 155-159, 2011 Author(s): R. Floors, E. Batchvarova, S.-E. Gryning, A. N. Hahmann, A. Peña, and T. Mikkelsen Wind profiles up to 600 m height are investigated. Measurements of mean wind speed profiles were obtained from a novel wind lidar and compared to model simulations from a mesoscale model (WRF-ARW v3.1). It is found that WRF is able to predict the mean wind profile rather well and typically within 1–2 m s −1 to the individual measured values. WRF underpredicts the normalized wind profile, especially for stable conditions. The effect of baroclinicity on the upper part of the wind profile is discussed.
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  • 48
    facet.materialart.
    Unbekannt
    Copernicus
    Publikationsdatum: 2012-02-18
    Beschreibung: Extreme summer temperatures in Western Europe Advances in Science and Research, 8, 5-9, 2012 Author(s): C. Simolo, M. Brunetti, M. Maugeri, and T. Nanni We discuss the evolution of summer temperature extremes over Western Europe during 1961–2004 in the context of current climate warming. Using a parametric approach, we investigate the role of properties and changes in probability density functions of daily temperatures in modifying the frequency of severe, isolated events. In this perspective, the recent intensification of extremely warm events over Europe turns out to be well consistent with a pure, nonuniform shift of mean values, with no room for conjectures about increasing temperature variability.
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  • 49
    Publikationsdatum: 2013-01-17
    Beschreibung: Sensitivity of the RMI's MAGIC/Heliosat-2 method to relevant input data Advances in Science and Research, 10, 7-13, 2013 Author(s): C. Demain, M. Journée, and C. Bertrand Appropriate information on solar resources is very important for a variety of technological areas. Based on the potential of retrieving global horizontal irradiance from satellite data, an enhanced version of the Heliosat-2 method has been implemented at the Royal Meteorological Institute of Belgium to estimate surface solar irradiance over Belgium from Meteosat Second Generation at the SEVIRI spatial and temporal resolution. In this contribution, sensitivity of our retrieval scheme to surface albedo, atmospheric aerosol and water vapor contents is investigated. Results indicate that while the use of real-time information instead of climatological values can help to reduce to some extent the RMS error between satellite-retrieved and ground-measured solar irradiance, only the correction of the satellite-derived data with in situ measurements allows to significantly reduce the overall model bias.
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  • 50
    facet.materialart.
    Unbekannt
    Copernicus
    Publikationsdatum: 2013-01-17
    Beschreibung: Quality control of 10-min air temperature data at RMI Advances in Science and Research, 10, 1-5, 2013 Author(s): C. Bertrand, L. Gonzalez Sotelino, and M. Journée In the '90s, the Royal Meteorological Institute (RMI) of Belgium started to replace its conventional ''manual'' meteorological network by automated weather stations (AWSs). The meteorological measurement network is now fully automated. RMI counts 18 AWSs that made automated observations centrally available in our headquarters in Uccle, Brussels to internal as well as external users. Due to the large increase in the data amount associated with the automation, quality assurance (QA) procedures are being automated. However, human operators continue to play an essential role in the data validation processes. This contribution describes our newly developed semi-automatic quality control (QC) of 10-min air temperature data. After an existence test, the data are checked for limits consistency, temporal consistency and spatial consistency. At the end of these automated checks, a decision algorithm attributes a flag to each particular data. Each day the QC staff analyzes the preceding day observations in the light of the quality flags assigned by automated QA procedures during the night. It is the human decision whether or not a value is accepted.
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  • 51
    Publikationsdatum: 2013-02-27
    Beschreibung: Large-Eddy Simulation of plume dispersion within various actual urban areas Advances in Science and Research, 10, 33-41, 2013 Author(s): H. Nakayama, K. Jurcakova, and H. Nagai Plume dispersion of hazardous materials within urban area resulting from accidental or intentional releases is of great concern to public health. Many researchers have developed local-scale atmospheric dispersion models using building-resolving computational fluid dynamics. However, an important issue is encountered when determining a reasonable domain size of the computational model in order to capture concentration distribution patterns influenced by urban surface geometries. In this study, we carried out Large-Eddy Simulations (LES) of plume dispersion within various urban areas with a wide range of obstacle density and building height variability. The difference of centerline mean and r.m.s. concentration distributions among various complex urban surface geometries becomes small for downwind distances from the point source greater than 1.0 km. From these results, it can be concluded that a length of a computational model should be at least 1.0 km from a point source.
    Print ISSN: 1992-0628
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    Thema: Allgemeine Naturwissenschaft
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  • 52
    facet.materialart.
    Unbekannt
    Oxford University Press
    Publikationsdatum: 2012-10-12
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    Thema: Elektrotechnik, Elektronik, Nachrichtentechnik , Allgemeine Naturwissenschaft , Physik
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  • 53
    facet.materialart.
    Unbekannt
    Oxford University Press
    Publikationsdatum: 2012-10-12
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    Thema: Elektrotechnik, Elektronik, Nachrichtentechnik , Allgemeine Naturwissenschaft , Physik
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  • 54
    Publikationsdatum: 2012-10-12
    Beschreibung: The dry weight of tendon tissue is accounted for mainly by collagen fibers. Accordingly, the tendon-healing process primarily involves repair of collagen fibers. During the remodeling phase of tendon healing, newly proliferating collagen fibers are transformed into a mature repaired tendon. Despite the importance of this phenomenon, the details of fibrous rebuilding have not been reported previously. The aim of this study was to visualize the ultrastructural changes and to obtain a clear understanding of the reorganization of the collagen fibers in the tendon repair site, using rat Achilles tendons. We used scanning electron microscopy (SEM) with cell maceration as the main method of analysis. Pretreatment with cell maceration removed the cellular components successfully. This allowed precise visualization of each collagen fiber and the three-dimensional network of the fibers. This study was the first to apply the cell-maceration/SEM method to observe tendon tissue. Seven days after surgery, new collagen fibers grew extensively in the repair site in a random arrangement. Fourteen days after surgery, the collagen fibers began to form an axial arrangement. Near the tendon stump, this change progressed from the outer layer to the core region. On the other hand, in the middle of the repair site, it progressed from the core to the outer layer. Change in the axial arrangement of collagen fibers contributes to the connection between the repair site and the tendon stump and to the separation of the repair site from the paratenon.
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  • 55
    facet.materialart.
    Unbekannt
    Oxford University Press
    Publikationsdatum: 2012-10-12
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    Thema: Elektrotechnik, Elektronik, Nachrichtentechnik , Allgemeine Naturwissenschaft , Physik
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  • 56
    Publikationsdatum: 2012-10-12
    Beschreibung: We have used transient electron-beam-induced current (EBIC) to map minority carrier lifetime distributions in multicrystalline Silicon (mc-Si). In this technique, the electron beam from a scanning transmission electron microscope was on–off modulated while the sample was scanned. The resulting transient EBIC was analyzed to form a lifetime map. An analytical function was introduced as part of the analysis in determining this map. We have verified this approach using numerical simulations and have reproduced a lifetime map for an mc-Si wafer.
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  • 57
    Publikationsdatum: 2012-04-16
    Beschreibung: We study in situ behavior of platinum single atoms on amorphous carbon (a-carbon) using a spherical aberration-corrected transmission electron microscope (AC-TEM). Diffusion of single atoms, bi-atoms, clusters (〈1 nm) and nanoparticles (〈3 nm) was recorded in the same image with a time resolution of 1 s, and such diffusion matches the expected mechanism of Ostwald ripening, which was seen on these samples. In situ AC-TEM shows promise for dynamical observation of single atom diffusion, which is important for understanding nanosized catalysts and ceramic sintering processes. We apply in situ AC-TEM to image platinum (Pt) nanoparticles on a-carbon, which is a model catalyst system for the real Pt electrode catalysts using alloys and core–shell structures supported on carbon/oxide composite materials in the proton exchange membrane fuel cell.
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  • 58
    Publikationsdatum: 2012-04-16
    Beschreibung: The oviduct is an important organ for successful mammalian reproduction. In this work, human oviducts were inseminated and their explants analyzed using scanning electron microscopy in order to study, at a finer ultrastructual level, the interaction between spermatozoon and oviduct in vitro . Results show unequivocally a spermatozoon tightly attached through the acrosomal region of its head to several cilia of the human tubal epithelial cells. This finding proves that spermatozoa do indeed adhere to the endosalpinx, a fact of utmost relevance for the physiology of the reproductive process, since it supports the idea of a spermatozoa reservoir being formed in the oviduct, which is also briefly discussed.
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  • 59
    Publikationsdatum: 2012-04-16
    Beschreibung: Mitochondria in all eukaryotes are essential organelles responsible for adenosine triphosphate synthesis, calcium homeostasis and steroidogenesis. Because the structure and distribution of mitochondria are highly diverse depending on their function and cellular conditions, it is important to develop a rapid and accurate method to assess their morphology. In this study, we visualize whole mitochondria in cultured cells using high-voltage electron microscopy (HVEM). Compared with conventional transmission electron microscopic approaches, the present method does not require thin sectioning and thus requires less time for image acquisition and processing. Furthermore, compared with fluorescence-based light microscopic approaches, our method provides more accurate size information. Thus, we propose that HVEM is a useful tool for rapid and accurate analysis of mitochondrial morphology and distribution in a cell.
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  • 60
    Publikationsdatum: 2012-04-06
    Beschreibung: INCA-CE: a Central European initiative in nowcasting severe weather and its applications Advances in Science and Research, 8, 67-75, 2012 Author(s): A. Kann, G. Pistotnik, and B. Bica The INCA-CE ( I ntegrated N owcasting through C omprehensive A nalysis – C entral E urope) project aims at implementing a transnational weather information system as well as applications for different socio-economic sectors to reduce risks of major economic damage and loss of life caused by severe weather. Civil protection and also stakeholders from economic sectors are in a growing need of accurate and reliable short-term weather forecasts. Within INCA-CE, a state-of-the art nowcasting system (INCA) is implemented at weather services throughout the European Union's CE (Central Europe) Programme Area, providing analyses and short term forecasts to the aforementioned end-users. In a coherent approach, the INCA (Integrated Nowcasting through Comprehensive Analysis) system will be adapted for implementation and use in a number of partner countries. Within transregional working groups, the gap between short-term weather information and its downstream activities in hydrological disaster management, civil protection and road management will be bridged and best practice management and measure plans will be produced. A web-based platform for outreach to related socio-economic sectors will initiate and foster a dialogue between weather services and further stakeholders like tourism or the insurance sector, flood authorities for disaster management, and the construction industry for cost-efficient scheduling and planning. Furthermore, the project will produce a compact guideline for policy makers on how to combine structural development aspects with these new features. In the present paper, an outline of the project implementation, a short overview about the INCA system and two case studies on precipitation nowcasts will be given. Moreover, directions for further developments both within the INCA system and the INCA-CE project will be pointed out.
    Print ISSN: 1992-0628
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  • 61
    facet.materialart.
    Unbekannt
    Copernicus
    Publikationsdatum: 2012-04-17
    Beschreibung: First outcomes from the CNR-ISAC monthly forecasting system Advances in Science and Research, 8, 77-82, 2012 Author(s): D. Mastrangelo, P. Malguzzi, C. Rendina, O. Drofa, and A. Buzzi A monthly probabilistic forecasting system is experimentally operated at the ISAC institute of the National Council of Research of Italy. The forecasting system is based on GLOBO, an atmospheric general circulation model developed at the same institute. The model is presently run on a monthly basis to produce an ensemble of 32 forecasts initialized with GFS-NCEP perturbed analyses. Reforecasts, initialized with ECMWF ERA-Interim reanalyses of the 1989–2009 period, are also produced to determine modelled climatology of the month to forecast. The modelled monthly climatology is then used to calibrate the ensemble forecast of daily precipitation, geopotential height and temperature on standard pressure levels. In this work, we present the forecasting system and a preliminary evaluation of the model systematic and forecast errors in terms of non-probabilistic scores of the 500-hPa geopotential height. Results show that the proposed forecasting system outperforms the climatology in the first two weeks of integrations. The adopted calibration based on weighted bias correction is found to reduce the systematic and the forecast errors.
    Print ISSN: 1992-0628
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  • 62
    Publikationsdatum: 2012-04-16
    Beschreibung: Scanning electron microscopy (SEM) using osmium-maceration methods has been used for analyzing the three-dimensional structure of cell organelles in tissue samples, but it has been quite difficult to observe free and cultured cells with this technique. The present study was performed to develop a method that can be applied to free and cultured cells for SEM studies of intracellular structures after osmium maceration. The method was also applied to light microscopy (LM) and to transmission electron microscopy (TEM). HeLa cells and human leukocytes were fixed with a mixture of 0.5% paraformaldehyde and 0.5% glutaraldehyde followed by an additional fixation with 1% osmium tetroxide. These cells were embedded in low-melting-point agarose. A temperature-responsive dish was also used for collection of cultured cells before embedding. For LM and TEM, the cell-embedded agarose was further embedded in epoxy resin, and semi- and ultrathin sections were examined conventionally. For SEM, the agarose was freeze-fractured in 50% dimethyl sulfoxide, processed for osmium maceration and observed in a high-resolution SEM. Low-melting-point agarose was useful as an embedding medium for SEM, because it was well preserved during prolonged osmication for SEM. Thus, the fine structure of cell organelles was clearly analyzed by SEM after osmium-maceration treatment. These SEM images could also be compared with those of LM and TEM of the agarose-embedded tissues.
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  • 63
    facet.materialart.
    Unbekannt
    Oxford University Press
    Publikationsdatum: 2012-04-16
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  • 64
    Publikationsdatum: 2012-04-16
    Beschreibung: The three-dimensional spin structure of the magnetic vortex of FeSiB, an amorphous soft magnetic material, was investigated by holography observation and computer simulation. Magnetization distribution in the neighborhood of the vortex center was estimated from the phase distribution obtained by holography observation. To confirm this magnetization distribution, sample-tilting experiments were performed: when the sample was tilted with respect to the electron beam direction, the phase-image center was found to shift along the tilting axis. Finite-element computer simulation was carried out to estimate the amount of shifts of the phase-image center in the sample tilting from the experimental magnetization distributions in the no sample-tilting conditions. We found that the simulated shifts of the phase-image center were in good agreement with those in the sample-tilting experiment, thus confirming the magnetization distribution near the vortex center obtained by holography observation.
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  • 65
    facet.materialart.
    Unbekannt
    Oxford University Press
    Publikationsdatum: 2012-04-16
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    Thema: Elektrotechnik, Elektronik, Nachrichtentechnik , Allgemeine Naturwissenschaft , Physik
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  • 66
    facet.materialart.
    Unbekannt
    Oxford University Press
    Publikationsdatum: 2012-04-16
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    Thema: Elektrotechnik, Elektronik, Nachrichtentechnik , Allgemeine Naturwissenschaft , Physik
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  • 67
    Publikationsdatum: 2012-04-16
    Beschreibung: In this study, based on a comprehensive numerical simulation of self-consistent charging, we investigate the formation, evolution and influencing factors of space charge distributions for a grounded insulating thin film of SiO 2 negatively charged by a keV non-penetrating focused electron beam. The simulated space charge presents first positive distributions and then negative ones along both the radial and depth directions because of the difference between electron and hole transports. The variations in distribution occur within a range of the minimum potential acting as a potential barrier for carrier transport. The negative space charge is distributed more widely and deeply, though its peak value in density is usually lower than that of the positive one. Electrons trapped outside the minimum potential range dominate the strength of negative charging. With the increase in potential barrier and the occurrence of leakage current, the space charge eventually reaches equilibrium and exhibits an approximately one-dimensional axial distribution outside the minimum potential range. Distribution features of the space charge density in the equilibrium state correlate with the film and beam parameters via transients of the leakage current. These results and analyses provide new insights into the negative charging effects involved in various electron-beam-based surface microscopic methods, analyses and fabrication techniques.
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  • 68
    Publikationsdatum: 2012-04-16
    Beschreibung: This study was designed to elucidate details of the structure and formation process of the alternate lamellar pattern known to exist in lamellar bone. For this purpose, we examined basic internal lamellae in femurs of young rats by transmission and scanning electron microscopy, the latter employing two different macerations with NaOH at concentrations of 10 and 24%. Observations after the maceration with 10% NaOH showed that the regular and periodic rotation of collagen fibrils caused an alternation between two types of lamellae: one consisting of transversely and nearly transversely cut fibrils, and the other consisting of longitudinally and nearly longitudinally cut fibrils. This finding confirms the consistency of the twisted plywood model. The maceration method with 24% NaOH removed bone components other than cells, thus allowing for three-dimensional observations of osteoblast morphology. Osteoblasts extended finger-like processes paralleling the inner bone surface, and grouped in such a way that, within a group, the processes arranged in a similar direction. Transmission electron microscopy showed that newly deposited fibrils were arranged alongside these processes. For the formation of the alternating pattern, our findings suggest that: (1) osteoblasts control the collagen fibril arrangement through their finger-like process position; (2) osteoblasts behave similarly within a group; (3) osteoblasts move their processes synchronously and periodically to promote alternating different fibril orientation; and (4) this dynamic sequential deposition of fibrils results in the alternate lamellar (or twisted plywood) pattern.
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  • 69
    Publikationsdatum: 2012-04-16
    Beschreibung: Three-dimensional (3D) reconstruction experiments were carried out by observing high-resolution 3D electrostatic potential distributions of Pt nanoparticles using off-axis electron holographic tomography. These Pt nanoparticles were mounted on the surfaces of amorphous silicon pillars. In order to realize high-resolution observation, we developed a mechanically stable 3D specimen holder with small specimen drifts and vibrations. From the 3D electrostatic potential distribution data of Pt nanoparticles (2.0 nm in diameter), we obtained the resolution of 1.5 nm.
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  • 70
    Publikationsdatum: 2013-02-12
    Beschreibung: An overview of drought events in the Carpathian Region in 1961–2010 Advances in Science and Research, 10, 21-32, 2013 Author(s): J. Spinoni, T. Antofie, P. Barbosa, Z. Bihari, M. Lakatos, S. Szalai, T. Szentimrey, and J. Vogt The Carpathians and their rich biosphere are considered to be highly vulnerable to climate change. Drought is one of the major climate-related damaging natural phenomena and in Europe it has been occurring with increasing frequency, intensity, and duration in the last decades. Due to climate change, land cover changes, and intensive land use, the Carpathian Region is one of the areas at highest drought risk in Europe. In order to analyze the drought events over the last 50 yr in the area, we used a 1961–2010 daily gridded temperature and precipitation dataset. From this, monthly 0.1° × 0.1° grids of four drought indicators (Standardized Precipitation-Evapotranspiration Index (SPEI), Standardized Precipitation Index (SPI), Reconnaissance Drought Indicator (RDI), and Palfai Aridity/Drought Index (PADI)) have been calculated. SPI, SPEI, and RDI have been computed at different time scales (3, 6, and 12 months), whilst PADI has been computed on an annual basis. The dataset used in this paper has been constructed in the framework of the CARPATCLIM project, run by a consortium of institutions from 9 countries (Austria, Croatia, Czech Republic, Hungary, Poland, Romania, Serbia, Slovakia, and Ukraine) with scientific support by the Joint Research Centre (JRC) of the European Commission. Temperature and precipitation station data have been collected, quality-checked, completed, homogenized, and interpolated on the 0.1° × 0.1° grid, and drought indicators have been consequently calculated on the grid itself. Monthly and annual series of the cited indicators are presented, together with high-resolution maps and statistical analysis of their correlation. A list of drought events between 1961 and 2010, based on the agreement of the indicators, is presented. We also discuss three case studies: drought in 1990, 2000, and 2003. The drought indicators have been compared both on spatial and temporal scales: it resulted that SPI, SPEI, and RDI are highly comparable, especially over a 12-month accumulation period. SPEI, which includes PET (Potential Evapo-Transpiration) as RDI does, proved to perform best if drought is caused by heat waves, whilst SPI performed best if drought is mainly driven by a rainfall deficit, because SPEI and RDI can be extreme in dry periods. According to PADI, the Carpathian Region has a sufficient natural water supply on average, with some spots that fall into the ''mild dry'' class, and this is also confirmed by the FAO-UNEP aridity index and the Köppen-Geiger climate classification.
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  • 71
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    Unbekannt
    Oxford University Press
    Publikationsdatum: 2013-02-19
    Beschreibung: Brain function is based on proper connectivity between neuronal cells. In the developing brain, neurons extend axons and form synaptic connections with appropriate postsynaptic neurons. Molecular mechanisms underlying establishment of proper synaptic connections are one of the most important topics in the field of developmental neurobiology. Dynamics of synaptic structure and local recruitment of synaptic molecules can be studied by live-cell imaging of neurons expressing fluorescent probes of synaptic molecules. In this review, examples of live-cell fluorescence imaging are presented and their contributions to our understanding about the molecular mechanisms of synapse formation and remodeling are discussed. Imaging of synaptic proteins in living neurons revealed rapid formation of individual synapses within hours and extensive remodeling of synaptic connections. Different types of neurons express unique protrusions from dendrites and axons, which play important roles in synapse formation and maturation. Rapid formation of synaptic structure is associated with continual assembly and disassembly of synaptic scaffolding proteins, which are essential building blocks of the presynaptic active zone and the postsynaptic density (PSD). Quantitative analyses of PSD scaffolding proteins further confirmed their essential roles in maintenance of the synaptic structure. These examples clearly indicate that fluorescence-based live-cell imaging is an indispensable technique in the research on synapse development and its impact will further increase in combination with development of new light microscopic techniques in the future.
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  • 72
    facet.materialart.
    Unbekannt
    Oxford University Press
    Publikationsdatum: 2013-02-19
    Beschreibung: High-speed atomic force microscopy (HS-AFM) has been developed as a nano-dynamics visualization technique. This microscopy permits direct observation of structure dynamics and dynamic processes of biological molecules in physiological solutions, at a subsecond to sub-100 ms temporal resolution and an ~2 nm lateral and a 0.1 nm vertical resolution. Importantly, tip–sample interactions do not disturb the biomolecules' functions. Various functioning proteins including myosin V walking on an actin filament and bacteriorhodopsin responding to light have been successfully visualized with HS-AFM. In the quest for understanding the functional mechanisms of proteins, inferences no longer have to be made from static snapshots of molecular structures and dynamic behavior of optical markers attached to proteins. High-resolution molecular movies obtained from HS-AFM observations reveal the details of molecules' dynamic behavior in action, without the need for intricate analyses and interpretations. In this review, I first describe the fundamentals behind the achieved high imaging rate and low invasiveness to samples, and then highlight recent imaging studies. Finally, future studies are briefly described.
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  • 73
    facet.materialart.
    Unbekannt
    Oxford University Press
    Publikationsdatum: 2013-02-19
    Beschreibung: This is a personal history of my structural studies of icosahedral viruses that evolved from crystallographic studies, to hybrid methods with electron cryo-microscopy and image reconstruction (cryoEM) and then developed further by incorporating a variety of physical methods to augment the high resolution crystallographic studies. It is not meant to be comprehensive, even for my own work, but hopefully provides some perspective on the growth of our understanding of these remarkable biologic assemblies. The goal is to provide a historical perspective for those new to the field and to emphasize the limitations of any one method, even those that provide atomic resolution information about viruses.
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  • 74
    Publikationsdatum: 2013-02-19
    Beschreibung: Biological processes occur on a wide range of spatial and temporal scales: from femtoseconds to hours and from angstroms to meters. Many new biological insights can be expected from a better understanding of the processes that occur on these very fast and very small scales. In this regard, new instruments that use fast X-ray or electron pulses are expected to reveal novel mechanistic details for macromolecular protein dynamics. To ensure that any observed conformational change is physiologically relevant and not constrained by 3D crystal packing, it would be preferable for experiments to utilize small protein samples such as single particles or 2D crystals that mimic the target protein's native environment. These samples are not typically amenable to X-ray analysis, but transmission electron microscopy has imaged such sample geometries for over 40 years using both direct imaging and diffraction modes. While conventional transmission electron microscopes (TEM) have visualized biological samples with atomic resolution in an arrested or frozen state, the recent development of the dynamic TEM (DTEM) extends electron microscopy into a dynamic regime using pump-probe imaging. A new second-generation DTEM, which is currently being constructed, has the potential to observe live biological processes with unprecedented spatiotemporal resolution by using pulsed electron packets to probe the sample on micro- and nanosecond timescales. This article reviews the experimental parameters necessary for coupling DTEM with in situ liquid microscopy to enable direct imaging of protein conformational dynamics in a fully hydrated environment and visualize reactions propagating in real time.
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  • 75
    Publikationsdatum: 2013-02-19
    Beschreibung: In this review, a non-standard application of high-resolution transmission electron microscope (HRTEM), namely the creation of so-called NanoLaboratory for the nanomaterial property studies within its pole piece, is presented. The most modern research trends with respect to nanotube, graphene and nanowire, as well as electrical, mechanical and electromechanical properties are demonstrated. In addition, the unique possibilities of modeling real technological processes inside HRTEM, for example, the performance of Li-ion batteries, are illustrated. The contribution particularly highlights the recent research endeavors of our Tsukuba group in line with all the above-mentioned directions of in situ TEM.
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  • 76
    Publikationsdatum: 2013-02-19
    Beschreibung: Inherently unstable, detergent-solubilized membrane protein complexes can often not be crystallized. For complexes that have a mass of 〉300 kDa, cryo-electron microscopy (EM) allows their three-dimensional (3D) structure to be assessed to a resolution that makes secondary structure elements visible in the best case. However, many interesting complexes exist whose mass is below 300 kDa and thus need alternative approaches. Two methods are reviewed: (i) Mass measurement in a scanning transmission electron microscope, which has provided important information on the stoichiometry of membrane protein complexes. This technique is applicable to particulate, filamentous and sheet-like structures. (ii) 3D-EM of negatively stained samples, which determines the molecular envelope of small membrane protein complexes. Staining and dehydration artifacts may corrupt the quality of the 3D map. Staining conditions thus need to be optimized. 3D maps of plant aquaporin SoPIP2;1 tetramers solubilized in different detergents illustrate that the flattening artifact can be partially prevented and that the detergent itself contributes significantly. Another example discussed is the complex of G protein-coupled receptor rhodopsin with its cognate G protein transducin.
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  • 77
    facet.materialart.
    Unbekannt
    Oxford University Press
    Publikationsdatum: 2013-02-19
    Beschreibung: In commemoration of the 20th anniversary of the molecular cloning of the gene for the green fluorescent protein from the jellyfish Aequorea victoria , I would like to reflect on the development of new fluorescence imaging technology in the last two decades. As this technology has become increasingly diversified, it has become more and more of a challenge to come up with a comprehensive and exhaustive review of it. Here I will focus on optogenetics and large-scale, three-dimensional reconstruction. Those two technological innovations have been achieved in the neuroscience community owing to the combined efforts of molecular biologists and light microscopists. In addition, modern fluorescence imaging has indeed improved our understanding of the spatiotemporal regulation of fundamental biological functions at cellular level. As an example, I will introduce some findings we made regarding the movement of biomolecules across the nuclear membrane. The above-mentioned imaging approaches are possible today but were impossible two decades ago.
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  • 78
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    Oxford University Press
    Publikationsdatum: 2013-02-19
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    Thema: Elektrotechnik, Elektronik, Nachrichtentechnik , Allgemeine Naturwissenschaft , Physik
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  • 79
    Publikationsdatum: 2013-02-19
    Print ISSN: 0022-0744
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    Thema: Elektrotechnik, Elektronik, Nachrichtentechnik , Allgemeine Naturwissenschaft , Physik
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  • 80
    Publikationsdatum: 2013-02-19
    Beschreibung: The origins and the recent accomplishments of aberration correction in scanning transmission electron microscopy (STEM) are reviewed. It is remembered that the successful correction of imaging aberrations of round lenses owes much to the successful correction of spectrum aberrations achieved in electron energy loss spectrometers 2–3 decades earlier. Two noteworthy examples of the types of STEM investigation that aberration correction has made possible are shown: imaging of single-atom impurities in graphene and analyzing atomic bonding of single atoms by electron energy loss spectroscopy (EELS). Looking towards the future, a new all-magnetic monochromator is described. The monochromator uses several of the principles pioneered in round lens aberration correction, and it employs stabilization schemes that make it immune to variations in the high voltage of the microscope and in the monochromator main prism current. Tests of the monochromator carried out at 60 keV have demonstrated energy resolution as good as 12 meV and monochromated probe size of ~1.2 Å. These results were obtained in separate experiments, but they indicate that the instrument can perform imaging and EELS with an atom-sized probe 〈30 meV wide in energy, and that an improvement in energy resolution to 10 meV and beyond should be possible in the future.
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    Thema: Elektrotechnik, Elektronik, Nachrichtentechnik , Allgemeine Naturwissenschaft , Physik
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  • 81
    Publikationsdatum: 2013-02-19
    Beschreibung: Novel spherical aberration (Cs) and chromatic aberration (Cc) correctors, which correct aberrations using a new principle, were developed. The asymmetric Cs correctors were designed for use in the probe- and image-forming systems at 300 kV to diminish undesired parasitic aberrations. The correctors composed of non-equivalent multipoles connecting with a demagnifying transfer doublet in the system. The axial aberrations were corrected well up to the fifth order except 6-fold astigmatism ( A 6 ) experimentally. Next, we developed superior Cs correctors for probe- and image-forming systems of low voltage microscope that uses triple dodecapoles to correct 6-fold astigmatism ( A 6 ). An important feature of this system is the rotation of the 3-fold astigmatism azimuth at the second dodecapole. The optimum rotation of the three hexapole fields for the compensation of A 6 was derived from theoretical calculations. The experimental results confirmed the compensation of A 6 and the third-order Cs. Finally, a unique Cc corrector, which utilized the concave lens effect formed by a long quadrupole field, was designed. The performance of the Cc corrector was investigated using a 30-kV transmission electron microscope. The results confirmed that Cc correction was achieved.
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  • 82
    Publikationsdatum: 2013-02-19
    Beschreibung: Theoretical considerations together with simulations of single-particle electron cryomicroscopy images of biological assemblies in ice demonstrate that atomic structures should be obtainable from images of a few thousand asymmetric units, provided the molecular weight of the whole assembly being studied is greater than the minimum needed for accurate position and orientation determination. However, with present methods of specimen preparation and current microscope and detector technologies, many more particles are needed, and the alignment of smaller assemblies is difficult or impossible. Only larger structures, with enough signal to allow good orientation determination and with enough images to allow averaging of many hundreds of thousands or even millions of asymmetric units, have successfully produced high-resolution maps. In this review, we compare the contrast of experimental electron cryomicroscopy images of two smaller molecular assemblies, namely apoferritin and beta-galactosidase, with that expected from perfect simulated images calculated from their known X-ray structures. We show that the contrast and signal-to-noise ratio of experimental images still require significant improvement before it will be possible to realize the full potential of single-particle electron cryomicroscopy. In particular, although reasonably good orientations can be obtained for beta-galactosidase, we have been unable to obtain reliable orientation determination from experimental images of apoferritin. Simulations suggest that at least 2-fold improvement of the contrast in experimental images at ~10 Å resolution is needed and should be possible.
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  • 83
    facet.materialart.
    Unbekannt
    Oxford University Press
    Publikationsdatum: 2013-02-19
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    Thema: Elektrotechnik, Elektronik, Nachrichtentechnik , Allgemeine Naturwissenschaft , Physik
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  • 84
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    Unbekannt
    Oxford University Press
    Publikationsdatum: 2013-02-19
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    Thema: Elektrotechnik, Elektronik, Nachrichtentechnik , Allgemeine Naturwissenschaft , Physik
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  • 85
    Publikationsdatum: 2013-02-19
    Beschreibung: This paper reviews diverse capabilities offered by modern electron microscopy techniques in studying fine structures of nanoporous crystals such as zeolites, silica mesoporous crystals, metal organic frameworks and yolk-shell materials. For the case of silica mesoporous crystals, new approaches that have been developed recently to determine the three-dimensionally periodic average structure, e.g., through self-consistent analysis of electron microscope images or through consideration of accidental extinctions, are presented. Various structural deviations in nanoporous materials from their average structures including intergrowth, surface termination, incommensurate modulation, quasicrystal and defects are demonstrated. Ibidem observations of the scanning electron microscope and atomic force microscope give information about the zeolite-crystal-growth mechanism, and an energy for unstitching a building-unit from a crystal surface is directly observed by an anatomic force microscope. It is argued how these observations lead to a deeper understanding of the materials.
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  • 86
    Publikationsdatum: 2013-02-19
    Beschreibung: Environmental transmission electron microscopy and ultra-high resolution electron microscopic observation using aberration correctors have recently emerged as topics of great interest. The former method is an extension of the so-called in situ electron microscopy that has been performed since the 1970s. Current research in this area has been focusing on dynamic observation with atomic resolution under gaseous atmospheres and in liquids. Since 2007, Nagoya University has been developing a new 1-MV high voltage (scanning) transmission electron microscope that can be used to observe nanomaterials under conditions that include the presence of gases, liquids and illuminating lights, and it can be also used to perform mechanical operations to nanometre-sized areas as well as electron tomography and elemental analysis by electron energy loss spectroscopy. The new instrument has been used to image and analyse various types of samples including biological ones.
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  • 87
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    Unbekannt
    Oxford University Press
    Publikationsdatum: 2013-02-19
    Beschreibung: Spin-polarized scanning electron microscopy (spin-SEM) is a magnetic domain observation method. In spin-SEM, polarization of secondary electrons emitted from a sample in a scanning electron microscope is detected by a spin detector and used as a signal for forming an image. The characteristics of spin-SEM are detection of all three magnetization vector components, which leads to the detection of the magnetization vector direction, high spatial resolution of around 3 nm and applicability to samples with rough or even 3D surfaces. Spin-SEM combined with other imaging methods using an electron probe beam such as scanning Auger electron microscopy for imaging element distribution and electron backscattering diffraction microscopy for imaging crystal direction distribution provides additional information that is important to study the magnetism. Spin-SEM with these excellent characteristics has a broad range of applications from basic research to applied research and developments in various industries.
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  • 88
    Publikationsdatum: 2013-02-19
    Beschreibung: We have compiled our recent in-situ quantitative environmental transmission electron microscopy (ETEM) studies on typical gold nanoparticulate catalysts for the low-temperature oxidation of CO to describe the issues surrounding the application of ETEM, with a special regard to catalyst chemistry. Thanks to the recent development of high-resolution environmental transmission electron microscopes that can work robustly to accumulate observation data in controlled environments, we can deal with the electron irradiation effects and heterogeneity of real catalysts. We established a structural evolution diagram that summarizes the structure of catalysts under electron irradiation as a function of the electron current density and the electron dose, D . By extrapolating to = 0, D = 0, we could deduce the intrinsic catalysis structure (without electron irradiation) in various environments, including reaction environments. By numerically and statistically analyzing a substantial number of ETEM images of gold nanoparticles, we established a morphology phase diagram that summarizes how the majority of gold nanoparticles change their morphology systematically as a function of the partial pressures of CO and O 2 . Similar diagrams will be helpful in elucidating the phenomena that directly correlate with the catalytic activity determined from ETEM observations. Using these quantitative analyses, we could analyze Cs-corrected ETEM images of the catalysts. The surfaces of gold nanoparticles were structurally reconstructed under reaction conditions, via interactions with CO molecules. CO molecules were observed on the surfaces of catalysts under reaction conditions using high-resolution ETEM. Finally, we discuss the potential of environmental transmission electron microscopy for quantitative in-situ microscopy at the atomic scale.
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  • 89
    facet.materialart.
    Unbekannt
    Oxford University Press
    Publikationsdatum: 2012-06-15
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    Thema: Elektrotechnik, Elektronik, Nachrichtentechnik , Allgemeine Naturwissenschaft , Physik
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  • 90
    facet.materialart.
    Unbekannt
    Oxford University Press
    Publikationsdatum: 2012-06-15
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    Thema: Elektrotechnik, Elektronik, Nachrichtentechnik , Allgemeine Naturwissenschaft , Physik
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  • 91
    facet.materialart.
    Unbekannt
    Oxford University Press
    Publikationsdatum: 2012-06-15
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    Thema: Elektrotechnik, Elektronik, Nachrichtentechnik , Allgemeine Naturwissenschaft , Physik
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  • 92
    Publikationsdatum: 2012-06-15
    Beschreibung: Optical sectioning using scanning confocal electron microscopy (SCEM) is a new three-dimensional (3D) imaging technique which promises improved depth resolution, particularly for laterally extended objects. Using a stage-scanning system to move the specimen in three dimensions, two-dimensional (2D) images sliced from any plane in XYZ space can be obtained in shorter acquisition times than those required for conventional electron tomography. In this paper, a double aberration-corrected SCEM used in annular dark-field mode was used to observe the 3D structure of SiO 2 hollow spheres fabricated by a carbon template method. The double-shell structure of the sample was clearly reflected in both XY - and XZ -sliced images. However, elongation along the optical axis was still evident in the XZ -sliced images even when double aberration correctors were used. Application of a deconvolution technique to the experimental XZ -sliced images reduced the elongated shell thicknesses of the SiO 2 sphere by 40–50% and the selectivity of information at a certain sample depth was also enhanced. Subsequently, 3D reconstruction by stacking the deconvoluted slice images restored the spherical surface of a SiO 2 sphere.
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  • 93
    Publikationsdatum: 2012-06-15
    Beschreibung: We report the production of electron vortex beams carrying large orbital angular momentum (OAM) using micro-fabricated spiral zone plates. A series of the spherical waves, focussing onto different positions along the propagating direction of the electron beam, were observed. The n th order vortex beam has an OAM n times larger than that of the first-order vortex beam. We observed an electron vortex with an OAM up to in a high-order diffracted wave. A linear dependence of the diameter of the vortex beam on the OAM was observed, being consistent to numerical simulations.
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  • 94
    Publikationsdatum: 2012-06-15
    Beschreibung: Alignment of projection images in tomographic reconstruction is a critical process that governs the quality of the reconstructed three-dimensional (3D) image. The most popular alignment method is the marker-based alignment, which typically uses colloidal gold particles added to the specimen (called fiducial markers) to calculate the coordinates of each projection image in the tilt series. This method, however, is not effective when each image contains only a small number of fiducial markers. Therefore, of all the parameters required for alignment, we focussed on the tilt angle and attempted to gage it directly in order to examine whether the acquired angle is accurate enough to perform tomographic reconstruction. We showed that the tilt angle measured using a commercially available capacitive liquid-based inclinometer is more precise than the reading from the monitor of the electron microscope and that it can lead to 3D reconstructions of quality similar to those obtained by the marker-based alignment method.
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  • 95
    Publikationsdatum: 2012-07-26
    Beschreibung: Statistical processing of forecasts for hydrological ensemble prediction: a comparative study of different bias correction strategies Advances in Science and Research, 8, 135-141, 2012 Author(s): I. Zalachori, M.-H. Ramos, R. Garçon, T. Mathevet, and J. Gailhard The aim of this paper is to investigate the use of statistical correction techniques in hydrological ensemble prediction. Ensemble weather forecasts (precipitation and temperature) are used as forcing variables to a hydrologic forecasting model for the production of ensemble streamflow forecasts. The impact of different bias correction strategies on the quality of the forecasts is examined. The performance of the system is evaluated when statistical processing is applied: to precipitation and temperature forecasts only ( pre-processing from the hydrological model point of view), to flow forecasts ( post-processing ) and to both. The pre-processing technique combines precipitation ensemble predictions with an analog forecasting approach, while the post-processing is based on past errors of the hydrological model when simulating streamflows. Forecasts from 11 catchments in France are evaluated. Results illustrate the importance of taking into account hydrological uncertainties to improve the quality of operational streamflow forecasts.
    Print ISSN: 1992-0628
    Digitale ISSN: 1992-0636
    Thema: Allgemeine Naturwissenschaft
    Publiziert von Copernicus
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  • 96
    Publikationsdatum: 2012-09-18
    Beschreibung: Statistical analysis of inter-arrival times of rainfall events for Italian Sub-Alpine and Mediterranean areas Advances in Science and Research, 8, 171-177, 2012 Author(s): C. Agnese, G. Baiamonte, C. Cammalleri, D. Cat Berro, S. Ferraris, and L. Mercalli In this work a set of time-series of inter-arrival times of rainfall events, at daily scale, was analysed, with the aim to verify the issue of increasing duration of dry periods. The set consists of 12 time-series recorded at rain gauges in 1926–2005, six of them belong to an Italian Sub-Alpine area (Piedmont) and six to a Mediterranean one (Sicily). In order to overcome the problem related to limited sample size for high values of inter-arrival times, the discrete probability polylog-series distribution was used to fit the empirical data from partial (20 yr) time-series. Moreover, a simple qualitative trend analysis was applied to some high quantiles of inter-arrival times as well as to the average extent of rain clusters. The preliminary analysis seems to confirm the issue of increasing duration of dry periods for both environments, which is limited to the ''cold'' season.
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    Thema: Allgemeine Naturwissenschaft
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  • 97
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    Unbekannt
    Copernicus
    Publikationsdatum: 2012-06-16
    Beschreibung: Quality control procedures at Euskalmet data center Advances in Science and Research, 8, 129-134, 2012 Author(s): R. Hernández, M. Maruri, K. Otxoa de Alda, J. Egaña, and S. Gaztelumendi The Basque Country Mesonet measures more than 130 000 observations daily from its 85 Automatic Weather Stations (AWS). It becomes clear that automated software is an indispensable tool for quality assurance (QA) of this mesoscale surface observing network. This work describes a set of experimental semi-automatic quality control (QC) routines that is applied at Euskalmet data center. It has paid special attention to level validation design and associated flags, as well as to the system outputs, which are used by meteorologist and maintenance staff.
    Print ISSN: 1992-0628
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    Thema: Allgemeine Naturwissenschaft
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  • 98
    Publikationsdatum: 2012-06-15
    Beschreibung: This study was designed to evaluate liver disease in neonatal piglets with surgical short bowel syndrome causing intestinal failure with partial parenteral nutrition dependence. The short bowel piglets had 75% surgical resection of distal small intestine, including all ileum and cecum, and were compared with sham controls, without resection, and to healthy sow-reared controls. After 18 days of combined parenteral and enteral nutrition in short bowel and sham piglets, liver tissue was collected for quantitative and semi-quantitative histological and ultrastructural evaluation. The short bowel piglets developed biochemical and histological cholestasis, not observed in sham and control piglets. Ultrastructural examination revealed bile canaliculus dilation with bile plugging, microvillus flattening and disappearance, but without abnormalities of the pericanalicular zone. Interestingly, these data are similar to bile canaliculus changes seen in human neonates with IFALD supporting an initial consideration of this model to elucidate the pathogenesis of IFALD.
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  • 99
    Publikationsdatum: 2012-06-15
    Beschreibung: The filamentous fungus Trichoderma reesei which is known to secrete high amounts of cellulolytic enzymes was found to produce a massive amount of fibrous material at the outer surface of the cell wall as observed by ultrahigh-resolution low-voltage scanning electron microscopy. Using transmission electron microscopy, the cell wall ornamentation of the hyper-cellulosic mutant PC-3-7 was found to be less massive and much thinner than for QM9414. A significant amount of fibrous material was produced in Avicel-grown cultures that were less abundant in glucose-grown cultures and Avicel was occasionally found entangled within the cell wall-associated fibrous layer.
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  • 100
    Publikationsdatum: 2012-06-15
    Beschreibung: Comparative verification of different nowcasting systems to support optimisation of thunderstorm warnings Advances in Science and Research, 8, 121-127, 2012 Author(s): K. Wapler, M. Goeber, and S. Trepte The development and use of nowcasting systems should inevitably be accompanied by the development and application of suitable verification methods. A thorough verification strategy is needed to adequately assess the quality of the system and consequently to lead to improvements. Different verification methods for thunderstorms and its attributes are discussed along with the importance of observational data sets. They are applied to two radar-based nowcasting algorithms for a convective season using various observation data sets. The results show, that the combination of the two algorithms outperforms a single algorithm.
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    Thema: Allgemeine Naturwissenschaft
    Publiziert von Copernicus
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